BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000598
         (1388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|2...   381   e-103
ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-...   380   e-103
ref|XP_002512344.1| excision repair cross-complementing 1 ercc1,...   375   e-101
ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago...   366   9e-99
ref|XP_003535349.1| PREDICTED: DNA excision repair protein ERCC-...   363   6e-98

>ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|222838142|gb|EEE76507.1|
            predicted protein [Populus trichocarpa]
          Length = 382

 Score =  381 bits (978), Expect = e-103
 Identities = 204/345 (59%), Positives = 233/345 (67%), Gaps = 4/345 (1%)
 Frame = +2

Query: 44   VITIPSYEEVLESXXXXXXXXXXXXXXXXXQ----AFSFIKNSEFYXXXXXXXXXXXXXX 211
            +I IPSY+EV+ES                 Q    AFSFIKNSEFY              
Sbjct: 22   LIQIPSYQEVIESSQVKPTQTQESSLFKPSQTFSQAFSFIKNSEFYSPPPPPPSKSEHGP 81

Query: 212  XXXEKXXXXXXXXXXXXXXXXXXXXXFQNRNAILVSHRQKGNPLLKHIRNVKWVFADAIC 391
                                       Q+RNAILVSHRQKGNPLLKHIRNVKW FAD +C
Sbjct: 82   SMASSSVQNN-----------------QSRNAILVSHRQKGNPLLKHIRNVKWAFADVVC 124

Query: 392  DYVLGPNSCALYLSIRYHLLHPDYLYYRIRELQKIFKLRXXXXXXXXXXXXKPLLEVTKT 571
            DY+LG +SCALYLS+RYHLLHPDYLYYRIRELQK  KLR            KPLLEVTKT
Sbjct: 125  DYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNCKLRVVLCHVDVEDVVKPLLEVTKT 184

Query: 572  CLLHDCTLLCAWSLEECGRYLETIKVYENKPADLLQGQMDTDYLSRMNHALTAVRRVNKT 751
             LLHDCTLLCAWSLEECGRYLETIK+YENKPADL+QGQMDTDY SR++HALT VRRVNKT
Sbjct: 185  ALLHDCTLLCAWSLEECGRYLETIKMYENKPADLIQGQMDTDYSSRLHHALTTVRRVNKT 244

Query: 752  DVVNLGSNFGSLSRIMDASMEDLARCPGIGEKKVKRFYDTFHEPFRRTVTTSQPAVISSS 931
            DVV LGS FGSLS IMDASMEDLARCPGIGE+KVKR YDTFHEPF+R V  S   V+  +
Sbjct: 245  DVVTLGSTFGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV--SSHPVVPQT 302

Query: 932  PVKEDAEFNSLNGGKKDKDVAGDETTKQNNKEPSISIKSALTAAF 1066
            PV++D E +S++    + ++      K   KEP +++KSAL++AF
Sbjct: 303  PVQKDTEPSSVD-EVAEMEMEEANANKHRKKEPELTVKSALSSAF 346


>ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-1-like [Vitis vinifera]
            gi|296088298|emb|CBI36743.3| unnamed protein product
            [Vitis vinifera]
          Length = 398

 Score =  380 bits (976), Expect = e-103
 Identities = 206/342 (60%), Positives = 236/342 (69%), Gaps = 1/342 (0%)
 Frame = +2

Query: 44   VITIPSYEEVLESXXXXXXXXXXXXXXXXXQAFSFIKNSEFYXXXXXXXXXXXXXXXXXE 223
            VI IPSY+EVLES                 QAFSF+K+S+ Y                 +
Sbjct: 23   VIKIPSYQEVLESSQSKTTSSLFTPSPSFSQAFSFVKSSQSYTPPPPATPPPPPPPSSRQ 82

Query: 224  KXXXXXXXXXXXXXXXXXXXXXFQNRNAILVSHRQKGNPLLKHIRNVKWVFADAICDYVL 403
                                   Q+RNAILVSHRQKGNPLLKHIRNV+W FAD +CDY+L
Sbjct: 83   VEQLEAPSSSSSSPSLSRSA---QSRNAILVSHRQKGNPLLKHIRNVRWDFADIVCDYLL 139

Query: 404  GPNSCALYLSIRYHLLHPDYLYYRIRELQKIFKLRXXXXXXXXXXXXKPLLEVTKTCLLH 583
            G NSCALYLS+RYHLLHPDYLYYRIRELQK FKLR            KPLLEVT+T LLH
Sbjct: 140  GQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKPLLEVTRTALLH 199

Query: 584  DCTLLCAWSLEECGRYLETIKVYENKPADLLQGQMDTDYLSRMNHALTAVRRVNKTDVVN 763
            DCTLLCAWSLEECGRYLETIKVYENK AD++QGQ DTDYLSR+ HALT VR VNKTDVV 
Sbjct: 200  DCTLLCAWSLEECGRYLETIKVYENKSADIIQGQTDTDYLSRLTHALTTVRHVNKTDVVT 259

Query: 764  LGSNFGSLSRIMDASMEDLARCPGIGEKKVKRFYDTFHEPFRRTVTTSQPAVISSSPVKE 943
            LGS FGSLS IMDASMEDLARCPGIGE+KVKR YDTFHEPF+R V  S PAV   +PV  
Sbjct: 260  LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR-VVPSCPAV-PENPVHN 317

Query: 944  DAEFNSLNG-GKKDKDVAGDETTKQNNKEPSISIKSALTAAF 1066
            +AE +S+N   + + DV  ++ +K+  KEP +++KSAL+AAF
Sbjct: 318  NAEPSSVNEVVEVENDV--EDASKRRKKEPELTVKSALSAAF 357


>ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
            communis] gi|223548305|gb|EEF49796.1| excision repair
            cross-complementing 1 ercc1, putative [Ricinus communis]
          Length = 392

 Score =  375 bits (963), Expect = e-101
 Identities = 201/345 (58%), Positives = 228/345 (66%), Gaps = 4/345 (1%)
 Frame = +2

Query: 44   VITIPSYEEVLESXXXXXXXXXXXXXXXXXQAFSFIKNSEFYXXXXXXXXXXXXXXXXXE 223
            VI IPSY+EV+ES                 QAFSFIK+SEFY                  
Sbjct: 23   VIQIPSYQEVIESSQNPKTESLFKPSQTFSQAFSFIKDSEFYTPPPQSSAVSNNANSIQT 82

Query: 224  KXXXXXXXXXXXXXXXXXXXXXFQNRNAILVSHRQKGNPLLKHIRNVKWVFADAICDYVL 403
                                     RN+ILVSHRQKGNPLLKHIRNV+W FAD +CDY+L
Sbjct: 83   TQSVPSPSQSVALTGNY--------RNSILVSHRQKGNPLLKHIRNVRWAFADVVCDYLL 134

Query: 404  GPNSCALYLSIRYHLLHPDYLYYRIRELQKIFKLRXXXXXXXXXXXXKPLLEVTKTCLLH 583
            G N C+LYLS+RYHLLHPDYLYYRIRELQK +KLR            KPLLEVTKT LLH
Sbjct: 135  GQNCCSLYLSLRYHLLHPDYLYYRIRELQKNYKLRVVLCHVDVEDVVKPLLEVTKTALLH 194

Query: 584  DCTLLCAWSLEECGRYLETIKVYENKPADLLQGQMDTDYLSRMNHALTAVRRVNKTDVVN 763
            DCTLLCAWSLEECGRYLETIK+YENKPADL+QGQMDTDYLSR+ HALT +R VNKTDVV 
Sbjct: 195  DCTLLCAWSLEECGRYLETIKMYENKPADLIQGQMDTDYLSRLTHALTTIRHVNKTDVVT 254

Query: 764  LGSNFGSLSRIMDASMEDLARCPGIGEKKVKRFYDTFHEPFRRTVTTSQPAVISSSPVKE 943
            LGS FGSLS IMDASMEDLARCPGIGE+KVKR YDTFHEPF+R V +S PAV  +S    
Sbjct: 255  LGSTFGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR-VVSSHPAVPETSQKDS 313

Query: 944  DA----EFNSLNGGKKDKDVAGDETTKQNNKEPSISIKSALTAAF 1066
            +     E   +  G+ D+       +K   KEP +++KSAL+AAF
Sbjct: 314  EPALVDEVTEVGKGEYDE-------SKWRKKEPELTVKSALSAAF 351


>ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
            gi|355480123|gb|AES61326.1| DNA excision repair protein
            ERCC-1 [Medicago truncatula]
          Length = 401

 Score =  366 bits (939), Expect = 9e-99
 Identities = 196/352 (55%), Positives = 231/352 (65%), Gaps = 11/352 (3%)
 Frame = +2

Query: 44   VITIPSYEEVLESXXXXXXXXXXXXXXXXX-QAFSFIKNSEFYXXXXXXXXXXXXXXXXX 220
            VI IPSY+EV+ES                  QAF+F+K+SEFY                 
Sbjct: 19   VIRIPSYQEVIESSQTKSTPPSLFVPSQTFSQAFAFVKSSEFYSPPPSLPKENAPSNASS 78

Query: 221  EKXXXXXXXXXXXXXXXXXXXXXFQ---NRNAILVSHRQKGNPLLKHIRNVKWVFADAIC 391
                                    Q   NRNAILVS+RQKGNPLLKHIRNV+W FAD +C
Sbjct: 79   STPSTSSATNNAPAASPNLPNSNSQPTQNRNAILVSNRQKGNPLLKHIRNVRWTFADVVC 138

Query: 392  DYVLGPNSCALYLSIRYHLLHPDYLYYRIRELQKIFKLRXXXXXXXXXXXXKPLLEVTKT 571
            D++LG +SCALYLS+RYHLLHPDYLY+RIRELQK FKLR            KPLLEVTKT
Sbjct: 139  DFLLGQSSCALYLSLRYHLLHPDYLYHRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKT 198

Query: 572  CLLHDCTLLCAWSLEECGRYLETIKVYENKPADLLQGQMDTDYLSRMNHALTAVRRVNKT 751
             LLHDCTLLC WSLEECGRYLETIKVYENKPAD++QGQMDTDYLSR+ HALT VR VNKT
Sbjct: 199  ALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHALTTVRHVNKT 258

Query: 752  DVVNLGSNFGSLSRIMDASMEDLARCPGIGEKKVKRFYDTFHEPFRRTVTTSQPAV---- 919
            DVV LG+NFGSLS IM ASMEDLARCPGIGE+KVKR +DTFHEPF+R V +S+ A+    
Sbjct: 259  DVVTLGTNFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKR-VESSRQAIPETS 317

Query: 920  ISSSPVKEDAE-FNSLNGGKKDKDV--AGDETTKQNNKEPSISIKSALTAAF 1066
            + + P  +D    N+       +D+    D  +K+  KEP  +++SAL+ AF
Sbjct: 318  VQNQPTSQDTSVINNTESSSSLEDIHKDADSASKRKKKEPEFTVRSALSVAF 369


>ref|XP_003535349.1| PREDICTED: DNA excision repair protein ERCC-1-like [Glycine max]
          Length = 398

 Score =  363 bits (932), Expect = 6e-98
 Identities = 196/356 (55%), Positives = 233/356 (65%), Gaps = 15/356 (4%)
 Frame = +2

Query: 44   VITIPSYEEVLESXXXXXXXXXXXXXXXXX-QAFSFIKNSEFYXXXXXXXXXXXXXXXXX 220
            VI IPSY+EV+ES                  +AF+F+K+S+FY                 
Sbjct: 20   VIRIPSYQEVVESSQAKSTPSSLFVPSQTFSEAFAFVKSSDFYSPPPKSRETGQSDAPSS 79

Query: 221  EKXXXXXXXXXXXXXXXXXXXXXFQNRNAILVSHRQ-----KGNPLLKHIRNVKWVFADA 385
                                    QNRN+ILVSHRQ     KGNPLLKHIRNV+W FAD 
Sbjct: 80   TSTPSPATAAASSTIPSS------QNRNSILVSHRQCIILQKGNPLLKHIRNVRWAFADV 133

Query: 386  ICDYVLGPNSCALYLSIRYHLLHPDYLYYRIRELQKIFKLRXXXXXXXXXXXXKPLLEVT 565
            +CDY+LG +SCALYLS+RYHLLHPDYLYYRIRELQK FKLR            KPLLEVT
Sbjct: 134  VCDYMLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKPLLEVT 193

Query: 566  KTCLLHDCTLLCAWSLEECGRYLETIKVYENKPADLLQGQMDTDYLSRMNHALTAVRRVN 745
            KT +LHDCTLLC WSLEECGRYLETIKVYENKPAD++QGQMDTDYLSR+ H+LT VR VN
Sbjct: 194  KTAMLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHSLTTVRHVN 253

Query: 746  KTDVVNLGSNFGSLSRIMDASMEDLARCPGIGEKKVKRFYDTFHEPFRRTVTTSQPAVIS 925
            KTDVV LG+ FGSLS IM ASMEDLARCPGIGE+KVKR +DTFHEPF+R  ++ Q    +
Sbjct: 254  KTDVVTLGTTFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPET 313

Query: 926  S---------SPVKEDAEFNSLNGGKKDKDVAGDETTKQNNKEPSISIKSALTAAF 1066
            S         S ++  AE +SL    +DK    ++ +K+  KEP +++KSAL+AAF
Sbjct: 314  SVQNKPASPESSIRNKAESSSL---IEDKQEDTEDVSKRRKKEPEVTVKSALSAAF 366