BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000540
         (632 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   133   8e-33
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   133   8e-33
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   130   1e-32
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   136   7e-32
gb|ABD96942.1| hypothetical protein [Cleome spinosa]                  140   2e-31

>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  133 bits (334), Expect(2) = 8e-33
 Identities = 60/155 (38%), Positives = 101/155 (65%)
 Frame = -3

Query: 498 NGRMLRGTSSTLISLIPKTNMTISGGDYRLISCCNVVYKSISKIIVNRLTKALPILASPN 319
           +G++L+  ++T + LIPK   +    D+R ISC N +YK I+K++ +RL K L  + SP+
Sbjct: 497 SGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPS 556

Query: 318 QAVFIKGRDITDNIIISHELLRKYNIKGIESRCTVTIDLQKAYDFIKWDVNVDILEMMGI 139
           Q+ F+ GR +++N++++ E++  YN K I SR  + +DL+KA+D ++WD  +     + +
Sbjct: 557 QSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAV 616

Query: 138 PDKMVDWTYTCISTVHYSHFINGSVEGYFKGKKGL 34
           P+K V W   CIST ++S  +NGS  G+FK  KGL
Sbjct: 617 PEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGL 651



 Score = 33.1 bits (74), Expect(2) = 8e-33
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 55  FQRKKGLRQGDPLSPVLF 2
           F+  KGLRQGDPLSP LF
Sbjct: 645 FKSNKGLRQGDPLSPYLF 662


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  133 bits (334), Expect(2) = 8e-33
 Identities = 60/155 (38%), Positives = 101/155 (65%)
 Frame = -3

Query: 498 NGRMLRGTSSTLISLIPKTNMTISGGDYRLISCCNVVYKSISKIIVNRLTKALPILASPN 319
           +G++L+  ++T + LIPK   +    D+R ISC N +YK I+K++ +RL K L  + SP+
Sbjct: 497 SGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPS 556

Query: 318 QAVFIKGRDITDNIIISHELLRKYNIKGIESRCTVTIDLQKAYDFIKWDVNVDILEMMGI 139
           Q+ F+ GR +++N++++ E++  YN K I SR  + +DL+KA+D ++WD  +     + +
Sbjct: 557 QSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAV 616

Query: 138 PDKMVDWTYTCISTVHYSHFINGSVEGYFKGKKGL 34
           P+K V W   CIST ++S  +NGS  G+FK  KGL
Sbjct: 617 PEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGL 651



 Score = 33.1 bits (74), Expect(2) = 8e-33
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 55  FQRKKGLRQGDPLSPVLF 2
           F+  KGLRQGDPLSP LF
Sbjct: 645 FKSNKGLRQGDPLSPYLF 662


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  130 bits (328), Expect(2) = 1e-32
 Identities = 66/154 (42%), Positives = 97/154 (62%)
 Frame = -3

Query: 495 GRMLRGTSSTLISLIPKTNMTISGGDYRLISCCNVVYKSISKIIVNRLTKALPILASPNQ 316
           G M +  + T ++L+PK     S  ++R I+CC+V+YK ISKI+ +R+   L  + S NQ
Sbjct: 171 GFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQ 230

Query: 315 AVFIKGRDITDNIIISHELLRKYNIKGIESRCTVTIDLQKAYDFIKWDVNVDILEMMGIP 136
           + F+KGR I DNII+SHEL++ Y+ KGI  RC V IDLQKAY+ ++W     ++  +G  
Sbjct: 231 SAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFS 290

Query: 135 DKMVDWTYTCISTVHYSHFINGSVEGYFKGKKGL 34
            K V+W   C++T  Y+  ING +   F  KKGL
Sbjct: 291 YKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGL 324



 Score = 34.7 bits (78), Expect(2) = 1e-32
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2

Query: 61  RVFQRKKGLRQGDPLSPVLF 2
           R F  KKGLRQGDP+SP LF
Sbjct: 316 RPFAAKKGLRQGDPISPYLF 335


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score =  136 bits (342), Expect(2) = 7e-32
 Identities = 61/154 (39%), Positives = 99/154 (64%)
 Frame = -3

Query: 495 GRMLRGTSSTLISLIPKTNMTISGGDYRLISCCNVVYKSISKIIVNRLTKALPILASPNQ 316
           G + +G +ST+++LIPK        DYR ISCCNV+YK ISKII NRL   LP   + NQ
Sbjct: 503 GFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQ 562

Query: 315 AVFIKGRDITDNIIISHELLRKYNIKGIESRCTVTIDLQKAYDFIKWDVNVDILEMMGIP 136
           + F+K R + +N++++ EL++ Y+   I +RC + ID+ KA+D ++W   +++  ++G P
Sbjct: 563 SAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFP 622

Query: 135 DKMVDWTYTCISTVHYSHFINGSVEGYFKGKKGL 34
            + + W   CI+T  +S  +NG + GYF+  +GL
Sbjct: 623 REFIHWINICITTASFSVQVNGELAGYFQSSRGL 656



 Score = 26.9 bits (58), Expect(2) = 7e-32
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 55  FQRKKGLRQGDPLSPVLF 2
           FQ  +GLRQG  LSP LF
Sbjct: 650 FQSSRGLRQGCALSPYLF 667


>gb|ABD96942.1| hypothetical protein [Cleome spinosa]
          Length = 402

 Score =  140 bits (353), Expect = 2e-31
 Identities = 71/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
 Frame = -3

Query: 498 NGRMLRGTSSTLISLIPKTNMTISGGDYRLISCCNVVYKSISKIIVNRLTKALPILASPN 319
           NG++L+  ++T+I+L+PK    I+ GD+R ISCCN +YK ISKII NRL   LP L S N
Sbjct: 6   NGKLLKELNATIITLVPKIPEAINLGDFRPISCCNFLYKVISKIIANRLQLLLPWLISGN 65

Query: 318 QAVFIKGRDITDNIIISHELLRKYNIKGIESRCTVTIDLQKAYDFIKWDVNVDILEMMGI 139
           QA F KGR + D+I+++ EL++ YN    E    + ID++KA+D I WD  +DIL  + +
Sbjct: 66  QAAFQKGRSMGDHIMLAAELVKDYNRPSAEPSAMLKIDIKKAFDSISWDFILDILRALDL 125

Query: 138 PDKMVDWTYTCISTVHYSHFINGSVEGYFKGKKGL-GRVTLYPQSF 4
           P   + W   CI++  +S  ING + G+F+GK+ + G V  + + F
Sbjct: 126 PLVFIGWIRECITSPSFSVAINGELAGFFRGKRVIYGMVNAWSRVF 171