BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000476
         (1184 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot...   482   e-138
sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding pro...   481   e-138
dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein...   479   e-137
emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [S...   478   e-137
gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I p...   477   e-137

>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
            cathayensis]
          Length = 267

 Score =  482 bits (1240), Expect(2) = e-138
 Identities = 236/256 (92%), Positives = 246/256 (96%), Gaps = 2/256 (0%)
 Frame = -2

Query: 1105 MAASTMALSSPFLSGKAVKSAPSPSELQGEGRITMRKTATKPK--TSSSPWYGPDRVKYL 932
            MAASTMALSSP L+G+A+K APS S+L GEGR+TMRKTA +PK  +S SPWYGPDRVKYL
Sbjct: 1    MAASTMALSSPSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYL 60

Query: 931  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 752
            GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61   GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 751  SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 572
            +RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG
Sbjct: 121  ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 180

Query: 571  GPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 392
            GPLGEV DP+YPGGSFDPLGLA+DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181  GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 391  LENLADHLADPVNNNA 344
            LENLADHLADPVNNNA
Sbjct: 241  LENLADHLADPVNNNA 256



 Score = 38.1 bits (87), Expect(2) = e-138
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 261 VNNNAWAFATNFVPGK 214
           VNNNAWA+ATNFVPGK
Sbjct: 252 VNNNAWAYATNFVPGK 267


>sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
            AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
            Precursor gi|14240|emb|CAA32526.1| chlorophyll a/b
            binding protein precursor [Spinacia oleracea]
            gi|193783447|emb|CAJ77389.3| major chlorophyll a/b
            binding protein LHCb1.3 [Spinacia oleracea]
          Length = 267

 Score =  481 bits (1239), Expect(2) = e-138
 Identities = 236/256 (92%), Positives = 246/256 (96%), Gaps = 2/256 (0%)
 Frame = -2

Query: 1105 MAASTMALSSPFLSGKAVKSAPSPSELQGEGRITMRKTATKPKT--SSSPWYGPDRVKYL 932
            MA+STMALSSP L+GKAVK  P+ SE+ GEGRITMRKTA KPKT  SSSPWYGPDRVKYL
Sbjct: 1    MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 931  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 752
            GPFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61   GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 751  SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 572
            +RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAG
Sbjct: 121  ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 180

Query: 571  GPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 392
            GPLGEV+DPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181  GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 391  LENLADHLADPVNNNA 344
            LENLADHLADPVNNNA
Sbjct: 241  LENLADHLADPVNNNA 256



 Score = 37.0 bits (84), Expect(2) = e-138
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -3

Query: 261 VNNNAWAFATNFVPGK 214
           VNNNAW FATNFVPGK
Sbjct: 252 VNNNAWNFATNFVPGK 267


>dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
            sylvestris]
          Length = 265

 Score =  479 bits (1234), Expect(2) = e-137
 Identities = 231/254 (90%), Positives = 242/254 (95%)
 Frame = -2

Query: 1105 MAASTMALSSPFLSGKAVKSAPSPSELQGEGRITMRKTATKPKTSSSPWYGPDRVKYLGP 926
            MAASTMALSSP  +G+AVK +PS SE+ G GR++MRKT  KP  SSSPWYGPDRVKYLGP
Sbjct: 1    MAASTMALSSPSFAGQAVKLSPSASEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 925  FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 746
            FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61   FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 745  NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 566
            NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+AGGP
Sbjct: 121  NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180

Query: 565  LGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 386
            LGEV+DPLYPGGSFDPLGLAEDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181  LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 385  NLADHLADPVNNNA 344
            NLADHLADPVNNNA
Sbjct: 241  NLADHLADPVNNNA 254



 Score = 38.1 bits (87), Expect(2) = e-137
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 261 VNNNAWAFATNFVPGK 214
           VNNNAWA+ATNFVPGK
Sbjct: 250 VNNNAWAYATNFVPGK 265


>emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
          Length = 267

 Score =  478 bits (1230), Expect(2) = e-137
 Identities = 232/256 (90%), Positives = 245/256 (95%), Gaps = 2/256 (0%)
 Frame = -2

Query: 1105 MAASTMALSSPFLSGKAVKSAPSPSELQGEGRITMRKTATKPK--TSSSPWYGPDRVKYL 932
            MA+STMALSSP L+GKA+K  P+ SE+ GEGR+TMRKTA KPK  +S SPWYGPDRVKYL
Sbjct: 1    MASSTMALSSPSLAGKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYL 60

Query: 931  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 752
            GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61   GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 751  SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 572
            +RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAG
Sbjct: 121  ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 180

Query: 571  GPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 392
            GPLGEV+DPLYPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181  GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 391  LENLADHLADPVNNNA 344
            LENLADHLADPVNNNA
Sbjct: 241  LENLADHLADPVNNNA 256



 Score = 38.1 bits (87), Expect(2) = e-137
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 261 VNNNAWAFATNFVPGK 214
           VNNNAW+FATNFVPGK
Sbjct: 252 VNNNAWSFATNFVPGK 267


>gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
            ginseng]
          Length = 266

 Score =  477 bits (1228), Expect(2) = e-137
 Identities = 237/255 (92%), Positives = 242/255 (94%), Gaps = 1/255 (0%)
 Frame = -2

Query: 1105 MAASTMALSSPFLSGKAVKSAPSPSELQGEGRITMRKTATKPKTSS-SPWYGPDRVKYLG 929
            MAASTMALSSP  +G AVK APS SEL G GRI+MRKT  KP  SS SPWYGPDRVKYLG
Sbjct: 1    MAASTMALSSPSFAGMAVKVAPSSSELFGSGRISMRKTGKKPAASSGSPWYGPDRVKYLG 60

Query: 928  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 749
            PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61   PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 748  RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 569
            RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG
Sbjct: 121  RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 180

Query: 568  PLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 389
            PLGEV+DPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181  PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 388  ENLADHLADPVNNNA 344
            ENLAD LADPVNNNA
Sbjct: 241  ENLADPLADPVNNNA 255



 Score = 38.1 bits (87), Expect(2) = e-137
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 261 VNNNAWAFATNFVPGK 214
           VNNNAWA+ATNFVPGK
Sbjct: 251 VNNNAWAYATNFVPGK 266