BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000393
         (1246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   222   2e-55
gb|AGE44298.1| whirly transcription factor domain containing pro...   221   3e-55
ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group] g...   217   4e-54
gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays] gi|41392...   213   1e-52
gb|ACF85629.1| unknown [Zea mays] gi|323388661|gb|ADX60135.1| PB...   211   4e-52

>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
           mitochondrial; AltName: Full=Protein WHIRLY 2;
           Short=StWHY2; Flags: Precursor
           gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
           tuberosum]
          Length = 238

 Score =  222 bits (565), Expect = 2e-55
 Identities = 118/242 (48%), Positives = 158/242 (65%), Gaps = 16/242 (6%)
 Frame = +3

Query: 180 MMKLSHLL--RSGAFEKFLTGKVDNTTNALWA-------------RNFISQAENRSNKFF 314
           M+K+S LL  R+    K L G+      ++W              +N ++ A  R  + F
Sbjct: 1   MLKVSRLLHPRNQLLHKKLPGEC--VKGSIWQHAINTFAGFSTVRQNVVADAGKREGRVF 58

Query: 315 GEYTVFKKKAALSCRPSLPSFNNSECSS-KYDKKGCVFLTFWPSIGERKYDWDKRQVFAL 491
             Y+VFK KAALS  P LP+FN  +    K +++G + LTFWPS+GERKYDW+KRQ+FAL
Sbjct: 59  APYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFAL 118

Query: 492 SPTELGSLISLEPGKSCEFLHDPSMKSSNAGQIRKQLSVTPFSEDSGYFFNLTVVNSNLK 671
           S TE+GSLIS+    S EF HDPSM SSNAGQ+RK LS+ P ++ SGYF +L+VVN+NLK
Sbjct: 119 SATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLK 178

Query: 672 TNERFSVPVSKAEFTVMCTGFSFILPHIIGWNQVTKQVPASSGQNPMKHQEMPPIPYLEW 851
           TN+RF+VPV+ AEF VM T FSF LPHI+GW++ T +   S  Q+P K   +P +   EW
Sbjct: 179 TNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPSESISQSPSK--VVPQLMEAEW 236

Query: 852 DK 857
           D+
Sbjct: 237 DR 238


>gb|AGE44298.1| whirly transcription factor domain containing protein [Musa AB
           Group]
          Length = 245

 Score =  221 bits (563), Expect = 3e-55
 Identities = 109/194 (56%), Positives = 141/194 (72%), Gaps = 2/194 (1%)
 Frame = +3

Query: 282 SQAENRSNKFFGEYTVFKKKAALSCRPSLPSFNNSECS-SKYDKKGCVFLTFWPSIGERK 458
           S   + S + + EYTVFK KAALS  P LP+F   +   S+  KKGCV LTFWP+IG+RK
Sbjct: 52  SPTGSSSVRRYVEYTVFKGKAALSVSPILPTFREVDSGVSRVHKKGCVILTFWPAIGQRK 111

Query: 459 YDWDKRQVFALSPTELGSLISLEPGKSCEFLHDPSMKSSNAGQIRKQLSVTPFSEDSGYF 638
           YDW K+Q FALSPTE+GSLI L P +SCEF HDPSMKSS  GQ++K LS++P ++ +GY 
Sbjct: 112 YDWQKKQAFALSPTEVGSLIGLGPAESCEFFHDPSMKSSLEGQVKKSLSISPLNDKAGYL 171

Query: 639 FNLTVVNSNLKTNERFSVPVSKAEFTVMCTGFSFILPHIIGWNQ-VTKQVPASSGQNPMK 815
            NL+VVN+  KTNERFS+PVSKAEFT + T FS++LPHI+GW+Q  + Q P+++   P +
Sbjct: 172 LNLSVVNNIQKTNERFSLPVSKAEFTAIRTVFSYVLPHIMGWSQAASPQPPSTATHTPKE 231

Query: 816 HQEMPPIPYLEWDK 857
             E  P P LEW +
Sbjct: 232 QIEERPDPSLEWGR 245


>ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group]
           gi|50251252|dbj|BAD28032.1| putative Chain C, Structure
           Of The Plant Transcriptional Regulator Pbf-2 [Oryza
           sativa Japonica Group] gi|50252182|dbj|BAD28177.1|
           putative Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 [Oryza sativa Japonica Group]
           gi|113535487|dbj|BAF07870.1| Os02g0158400 [Oryza sativa
           Japonica Group] gi|215692593|dbj|BAG88013.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215704516|dbj|BAG94149.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215740785|dbj|BAG96941.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218190103|gb|EEC72530.1| hypothetical protein
           OsI_05924 [Oryza sativa Indica Group]
           gi|222622212|gb|EEE56344.1| hypothetical protein
           OsJ_05450 [Oryza sativa Japonica Group]
          Length = 228

 Score =  217 bits (553), Expect = 4e-54
 Identities = 115/217 (52%), Positives = 150/217 (69%), Gaps = 10/217 (4%)
 Frame = +3

Query: 237 KVDNTTNALWARNFISQA--------ENRSNKFFGEYTVFKKKAALSCRPSLPSFNNSEC 392
           +V +  +ALW+ +   Q         EN S + F  YTVFK KAALS +P LPSF+  E 
Sbjct: 14  RVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALSMQPILPSFSKLES 73

Query: 393 S-SKYDKKGCVFLTFWPSIGERKYDWDKRQVFALSPTELGSLISLEPGKSCEFLHDPSMK 569
             S+ +K G V LTF+P++G+RKYD+ K+Q+FALSPTE+GSLISL P +SCEF HDPSMK
Sbjct: 74  GGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMK 133

Query: 570 SSNAGQIRKQLSVTPFSEDSGYFFNLTVVNSNLKTNERFSVPVSKAEFTVMCTGFSFILP 749
           SS+ GQ++K LSVTP   DSGYF N+TV+N+  KT ER S+P+SKAEFTVM T  SF LP
Sbjct: 134 SSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALSFALP 193

Query: 750 HIIGWNQ-VTKQVPASSGQNPMKHQEMPPIPYLEWDK 857
           HI+GW+Q +T   P+ S  +  K +   P P  EW++
Sbjct: 194 HILGWDQALTNHQPSPSPAS--KPRVERPHPDSEWER 228


>gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays]
           gi|413926544|gb|AFW66476.1| DNA binding protein isoform
           2 [Zea mays]
          Length = 274

 Score =  213 bits (541), Expect = 1e-52
 Identities = 117/239 (48%), Positives = 150/239 (62%), Gaps = 12/239 (5%)
 Frame = +3

Query: 177 TMMKLSHLLRSGAFEKFLTGKVDNTTNALWARNFISQAE----------NRSNKFFGEYT 326
           TM++LS  L S     F      +   +LW+ +   Q            N S K F  YT
Sbjct: 42  TMLRLSRFLPSACRRGF------DLKESLWSGSLTFQQAVSTAATNLDGNLSGKKFASYT 95

Query: 327 VFKKKAALSCRPSLPSFNNSECS-SKYDKKGCVFLTFWPSIGERKYDWDKRQVFALSPTE 503
           VFK KAALS  P LPSF+  E   S+  K G V LTF+P++G+RKYD+ K+Q+FALSPTE
Sbjct: 96  VFKGKAALSIHPILPSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALSPTE 155

Query: 504 LGSLISLEPGKSCEFLHDPSMKSSNAGQIRKQLSVTPFSEDSGYFFNLTVVNSNLKTNER 683
           +GSLISL P +SCEF HDPSMKSSN G ++K LS+TP   DSGYF N+TVVNS  +TN+R
Sbjct: 156 VGSLISLGPAESCEFFHDPSMKSSNEGTVKKSLSITPLGSDSGYFVNITVVNSAERTNDR 215

Query: 684 FSVPVSKAEFTVMCTGFSFILPHIIGWNQ-VTKQVPASSGQNPMKHQEMPPIPYLEWDK 857
            SVP++KAEF V+ T  SF LPHI+GW+Q +T   PA +     +     P P  EW++
Sbjct: 216 LSVPITKAEFAVIRTTLSFALPHIMGWDQALTNHHPAPAPPASSRPTVERPHPDSEWER 274


>gb|ACF85629.1| unknown [Zea mays] gi|323388661|gb|ADX60135.1| PBF-2 like
           transcription factor [Zea mays]
           gi|323388771|gb|ADX60190.1| PBF-2 like transcription
           factor [Zea mays]
          Length = 232

 Score =  211 bits (536), Expect = 4e-52
 Identities = 116/238 (48%), Positives = 149/238 (62%), Gaps = 12/238 (5%)
 Frame = +3

Query: 180 MMKLSHLLRSGAFEKFLTGKVDNTTNALWARNFISQAE----------NRSNKFFGEYTV 329
           M++LS  L S     F      +   +LW+ +   Q            N S K F  YTV
Sbjct: 1   MLRLSRFLPSACRRGF------DLKESLWSGSLTFQQAVSTAATNLDGNLSGKKFASYTV 54

Query: 330 FKKKAALSCRPSLPSFNNSECS-SKYDKKGCVFLTFWPSIGERKYDWDKRQVFALSPTEL 506
           FK KAALS  P LPSF+  E   S+  K G V LTF+P++G+RKYD+ K+Q+FALSPTE+
Sbjct: 55  FKGKAALSIHPILPSFSKLESGGSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEV 114

Query: 507 GSLISLEPGKSCEFLHDPSMKSSNAGQIRKQLSVTPFSEDSGYFFNLTVVNSNLKTNERF 686
           GSLISL P +SCEF HDPSMKSSN G ++K LS+TP   DSGYF N+TVVNS  +TN+R 
Sbjct: 115 GSLISLGPAESCEFFHDPSMKSSNEGTVKKSLSITPLGSDSGYFVNITVVNSAERTNDRL 174

Query: 687 SVPVSKAEFTVMCTGFSFILPHIIGWNQ-VTKQVPASSGQNPMKHQEMPPIPYLEWDK 857
           SVP++KAEF V+ T  SF LPHI+GW+Q +T   PA +     +     P P  EW++
Sbjct: 175 SVPITKAEFAVIRTTLSFALPHIMGWDQALTNHHPAPAPPASSRPTVERPHPDSEWER 232