BLASTX nr result
ID: Cimicifuga21_contig00000374
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00000374
(1790 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera] 689 0.0
emb|CBI31778.3| unnamed protein product [Vitis vinifera] 689 0.0
ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 689 0.0
ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabido... 660 0.0
ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arab... 659 0.0
>emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 689 bits (1779), Expect = 0.0
Identities = 352/459 (76%), Positives = 403/459 (87%), Gaps = 5/459 (1%)
Frame = +3
Query: 285 IIPIVSKPSQSVNHLSNYGSNEAPFHPSFGV----GAGIRDFHFSS-PLEFRSSMVVQAE 449
I P +S + N ++ AP P G+ G +R+F S PL+FR+S+V +AE
Sbjct: 36 IHPPISTSASDAVVARNVVTSAAPIPPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAE 95
Query: 450 YAVDDFSDEEKITGKSGAGDEGLEISKLGIDQDIVHALAKKGITRLFPIQKAVLEPAMQG 629
YAV DFSDEEK S GDEGLEISKLGI Q+IV ALA KGIT+LFPIQ+AVLEPAMQG
Sbjct: 96 YAVADFSDEEK---SSKGGDEGLEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQG 152
Query: 630 RDMIGRARTGTGKTLAFGIPILDKIIKFNAKHGRGRNPLALVLAPTRELARQVEKEFKES 809
RDMIGRARTGTGKTLAFGIPI+DK+I++NAKHGRGRNPLALVLAPTRELARQVEKEF ES
Sbjct: 153 RDMIGRARTGTGKTLAFGIPIMDKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFXES 212
Query: 810 APSLDTLVVYGGVPIMQQMNTLNFGVDVVVGTPGRIIDLLKRGALNLSEVQFVVLDEADQ 989
AP+LDTL VYGG PI +QMN+L++GVDVVVGTPGRIIDL+KRGALNLSEVQFVVLDEADQ
Sbjct: 213 APNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQ 272
Query: 990 MLAVGFDEDVEVILEKLPKQRQSMMFSATMPTWIIKLTQKYLKSPVTIDLVGDSDQKLAD 1169
MLAVGF+EDVE+ILEKLP+ RQSMMFSATMP+WI KLTQKYLK+P+TIDLVGDSDQKLA+
Sbjct: 273 MLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAE 332
Query: 1170 GITLYAIASDSYGKSSIIGPLVTEHAKGGKCIVFTQTKRDADRLAYSLANKFRCEALHGD 1349
GI+LY+IAS+ Y K+SI+GPL+TEHAKGGKCIVFTQTKRDADRLAY++A FRCEALHGD
Sbjct: 333 GISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGD 392
Query: 1350 ISQNQRERTLAGFRDGRFNILVATDVAARGLDVPNVDLVIHYELPNNSEIFVHRSGRTGR 1529
ISQ+QRERTL+GFRDG FN+LVATDVAARGLD+PNVDL+IHYELPN+SEIFVHRSGRTGR
Sbjct: 393 ISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGR 452
Query: 1530 AGKTGSAILIYTDSQSRAVRTIERDVGSKFTELPRIAVE 1646
AGK G+AILIY + Q+R VR IERD+G KF+ELPRIA+E
Sbjct: 453 AGKKGTAILIYAEQQARTVRFIERDIGCKFSELPRIAIE 491
>emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 689 bits (1777), Expect = 0.0
Identities = 352/459 (76%), Positives = 403/459 (87%), Gaps = 5/459 (1%)
Frame = +3
Query: 285 IIPIVSKPSQSVNHLSNYGSNEAPFHPSFGV----GAGIRDFHFSS-PLEFRSSMVVQAE 449
I P +S + N ++ AP P G+ G +R+F S PL+FR+S+V +AE
Sbjct: 36 IHPPISTSASDAVVARNVVTSAAPIPPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAE 95
Query: 450 YAVDDFSDEEKITGKSGAGDEGLEISKLGIDQDIVHALAKKGITRLFPIQKAVLEPAMQG 629
YAV DFSDEEK S GDEGLEISKLGI Q+IV ALA KGIT+LFPIQ+AVLEPAMQG
Sbjct: 96 YAVADFSDEEK---SSKGGDEGLEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQG 152
Query: 630 RDMIGRARTGTGKTLAFGIPILDKIIKFNAKHGRGRNPLALVLAPTRELARQVEKEFKES 809
RDMIGRARTGTGKTLAFGIPI+DK+I++NAKHGRGRNPLALVLAPTRELARQVEKEF ES
Sbjct: 153 RDMIGRARTGTGKTLAFGIPIMDKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCES 212
Query: 810 APSLDTLVVYGGVPIMQQMNTLNFGVDVVVGTPGRIIDLLKRGALNLSEVQFVVLDEADQ 989
AP+LDTL VYGG PI +QMN+L++GVDVVVGTPGRIIDL+KRGALNLSEVQFVVLDEADQ
Sbjct: 213 APNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQ 272
Query: 990 MLAVGFDEDVEVILEKLPKQRQSMMFSATMPTWIIKLTQKYLKSPVTIDLVGDSDQKLAD 1169
MLAVGF+EDVE+ILEKLP+ RQSMMFSATMP+WI KLTQKYLK+P+TIDLVGDSDQKLA+
Sbjct: 273 MLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAE 332
Query: 1170 GITLYAIASDSYGKSSIIGPLVTEHAKGGKCIVFTQTKRDADRLAYSLANKFRCEALHGD 1349
GI+LY+IAS+ Y K+SI+GPL+TEHAKGGKCIVFTQTKRDADRLAY++A FRCEALHGD
Sbjct: 333 GISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGD 392
Query: 1350 ISQNQRERTLAGFRDGRFNILVATDVAARGLDVPNVDLVIHYELPNNSEIFVHRSGRTGR 1529
ISQ+QRERTL+GFRDG FN+LVATDVAARGLD+PNVDL+IHYELPN+SEIFVHRSGRTGR
Sbjct: 393 ISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGR 452
Query: 1530 AGKTGSAILIYTDSQSRAVRTIERDVGSKFTELPRIAVE 1646
AGK G+AILIY + Q+R VR IERD+G KF+ELPRIA+E
Sbjct: 453 AGKKGTAILIYAEQQARTVRFIERDIGCKFSELPRIAIE 491
>ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 689 bits (1777), Expect = 0.0
Identities = 352/459 (76%), Positives = 403/459 (87%), Gaps = 5/459 (1%)
Frame = +3
Query: 285 IIPIVSKPSQSVNHLSNYGSNEAPFHPSFGV----GAGIRDFHFSS-PLEFRSSMVVQAE 449
I P +S + N ++ AP P G+ G +R+F S PL+FR+S+V +AE
Sbjct: 36 IHPPISTSASDAVVARNVVTSAAPIPPLSGLLGFSGFRVRNFRSQSGPLDFRASVVSRAE 95
Query: 450 YAVDDFSDEEKITGKSGAGDEGLEISKLGIDQDIVHALAKKGITRLFPIQKAVLEPAMQG 629
YAV DFSDEEK S GDEGLEISKLGI Q+IV ALA KGIT+LFPIQ+AVLEPAMQG
Sbjct: 96 YAVADFSDEEK---SSKGGDEGLEISKLGIAQEIVSALANKGITKLFPIQRAVLEPAMQG 152
Query: 630 RDMIGRARTGTGKTLAFGIPILDKIIKFNAKHGRGRNPLALVLAPTRELARQVEKEFKES 809
RDMIGRARTGTGKTLAFGIPI+DK+I++NAKHGRGRNPLALVLAPTRELARQVEKEF ES
Sbjct: 153 RDMIGRARTGTGKTLAFGIPIMDKVIQYNAKHGRGRNPLALVLAPTRELARQVEKEFCES 212
Query: 810 APSLDTLVVYGGVPIMQQMNTLNFGVDVVVGTPGRIIDLLKRGALNLSEVQFVVLDEADQ 989
AP+LDTL VYGG PI +QMN+L++GVDVVVGTPGRIIDL+KRGALNLSEVQFVVLDEADQ
Sbjct: 213 APNLDTLCVYGGTPISRQMNSLDYGVDVVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQ 272
Query: 990 MLAVGFDEDVEVILEKLPKQRQSMMFSATMPTWIIKLTQKYLKSPVTIDLVGDSDQKLAD 1169
MLAVGF+EDVE+ILEKLP+ RQSMMFSATMP+WI KLTQKYLK+P+TIDLVGDSDQKLA+
Sbjct: 273 MLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAE 332
Query: 1170 GITLYAIASDSYGKSSIIGPLVTEHAKGGKCIVFTQTKRDADRLAYSLANKFRCEALHGD 1349
GI+LY+IAS+ Y K+SI+GPL+TEHAKGGKCIVFTQTKRDADRLAY++A FRCEALHGD
Sbjct: 333 GISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGD 392
Query: 1350 ISQNQRERTLAGFRDGRFNILVATDVAARGLDVPNVDLVIHYELPNNSEIFVHRSGRTGR 1529
ISQ+QRERTL+GFRDG FN+LVATDVAARGLD+PNVDL+IHYELPN+SEIFVHRSGRTGR
Sbjct: 393 ISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGR 452
Query: 1530 AGKTGSAILIYTDSQSRAVRTIERDVGSKFTELPRIAVE 1646
AGK G+AILIY + Q+R VR IERD+G KF+ELPRIA+E
Sbjct: 453 AGKKGTAILIYAEQQARTVRFIERDIGCKFSELPRIAIE 491
>ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box
ATP-dependent RNA helicase 53 gi|9293867|dbj|BAB01770.1|
DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like
protein [Arabidopsis thaliana] gi|20259816|gb|AAM13255.1|
DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA
helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 660 bits (1704), Expect = 0.0
Identities = 336/444 (75%), Positives = 386/444 (86%), Gaps = 1/444 (0%)
Frame = +3
Query: 318 VNHLSNYGSNEAPFHPSFGVGAGIRDFHFSS-PLEFRSSMVVQAEYAVDDFSDEEKITGK 494
V+ L+ GS++ FGV A + HF S PL+FR+SMV QA +A+ + S E ++
Sbjct: 40 VSDLALIGSSDVKAGFPFGVEA--KGIHFQSGPLDFRASMVSQAGFAISE-SSERRVGDS 96
Query: 495 SGAGDEGLEISKLGIDQDIVHALAKKGITRLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 674
G +GL IS+LGI +IV AL+ KGI +LFPIQKAVLEPAM+GRDMIGRARTGTGKTL
Sbjct: 97 ESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTL 156
Query: 675 AFGIPILDKIIKFNAKHGRGRNPLALVLAPTRELARQVEKEFKESAPSLDTLVVYGGVPI 854
AFGIPI+DKIIK+NAKHGRGRNPL LVLAPTRELARQVEKEF+ESAPSLDT+ +YGG PI
Sbjct: 157 AFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPI 216
Query: 855 MQQMNTLNFGVDVVVGTPGRIIDLLKRGALNLSEVQFVVLDEADQMLAVGFDEDVEVILE 1034
QQM L++GVDV VGTPGR+IDL+KRGALNLSEVQFVVLDEADQML VGF EDVE+ILE
Sbjct: 217 GQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILE 276
Query: 1035 KLPKQRQSMMFSATMPTWIIKLTQKYLKSPVTIDLVGDSDQKLADGITLYAIASDSYGKS 1214
KLP++RQSMMFSATMP+WI LT+KYL +P+T+DLVGDSDQKLADGIT Y+I +DSYG++
Sbjct: 277 KLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRA 336
Query: 1215 SIIGPLVTEHAKGGKCIVFTQTKRDADRLAYSLANKFRCEALHGDISQNQRERTLAGFRD 1394
SIIGPLVTEHAKGGKCIVFTQTKRDADRL+Y+LA F+CEALHGDISQ+QRERTLAGFRD
Sbjct: 337 SIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRD 396
Query: 1395 GRFNILVATDVAARGLDVPNVDLVIHYELPNNSEIFVHRSGRTGRAGKTGSAILIYTDSQ 1574
G FNILVATDVAARGLDVPNVDL+IHYELPNN+E FVHR+GRTGRAGK GSAILIY+ Q
Sbjct: 397 GHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ 456
Query: 1575 SRAVRTIERDVGSKFTELPRIAVE 1646
SRAV+ IER+VGS+FTELP IAVE
Sbjct: 457 SRAVKIIEREVGSRFTELPSIAVE 480
>ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata] gi|297329195|gb|EFH59614.1| hypothetical protein
ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata]
Length = 612
Score = 659 bits (1700), Expect = 0.0
Identities = 339/444 (76%), Positives = 387/444 (87%), Gaps = 1/444 (0%)
Frame = +3
Query: 318 VNHLSNYGSNEAPFHPSFGVGAGIRDFHFSS-PLEFRSSMVVQAEYAVDDFSDEEKITGK 494
V+ L+ GS++ P F G R+FHF S PLEFR+SMV A +A+ + S E+ G
Sbjct: 40 VSDLAVIGSSDVK--PGFLSGVKAREFHFESGPLEFRASMVSSAGFAISESS--ERRVGD 95
Query: 495 SGAGDEGLEISKLGIDQDIVHALAKKGITRLFPIQKAVLEPAMQGRDMIGRARTGTGKTL 674
S + +GL IS+LGI +IV AL+ KGI +LFPIQKAVLEPAM+GRDMIGRARTGTGKTL
Sbjct: 96 SES--DGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTL 153
Query: 675 AFGIPILDKIIKFNAKHGRGRNPLALVLAPTRELARQVEKEFKESAPSLDTLVVYGGVPI 854
AFGIPI+DKIIK+NAKHGRGRNPL LVLAPTRELARQVEKEF+ESAPSLDT+ +YGG PI
Sbjct: 154 AFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPI 213
Query: 855 MQQMNTLNFGVDVVVGTPGRIIDLLKRGALNLSEVQFVVLDEADQMLAVGFDEDVEVILE 1034
QQM L++GVDV VGTPGR+IDL+KRGALNLSEVQFVVLDEADQML VGF EDVE+ILE
Sbjct: 214 GQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILE 273
Query: 1035 KLPKQRQSMMFSATMPTWIIKLTQKYLKSPVTIDLVGDSDQKLADGITLYAIASDSYGKS 1214
KLP++RQSMMFSATMP+WI LT+KYL +P+TIDLVGDSDQKLADGIT Y+I +DSYG++
Sbjct: 274 KLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRA 333
Query: 1215 SIIGPLVTEHAKGGKCIVFTQTKRDADRLAYSLANKFRCEALHGDISQNQRERTLAGFRD 1394
SIIGPLVTEHAKGGKCIVFTQTKRDADRL+Y+LA F+CEALHGDISQ+QRERTLAGFRD
Sbjct: 334 SIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRD 393
Query: 1395 GRFNILVATDVAARGLDVPNVDLVIHYELPNNSEIFVHRSGRTGRAGKTGSAILIYTDSQ 1574
G FNILVATDVAARGLDVPNVDL+IHYELPNN+E FVHR+GRTGRAGK GSAILIY+ Q
Sbjct: 394 GHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ 453
Query: 1575 SRAVRTIERDVGSKFTELPRIAVE 1646
SRAV+ IER+VGS+FTELP IAVE
Sbjct: 454 SRAVKIIEREVGSRFTELPSIAVE 477