BLASTX nr result

ID: Cimicifuga21_contig00000171 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000171
         (711 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06446.1| 40S ribosomal protein S19 [Elaeis guineensis]          261   1e-67
ref|XP_002269657.1| PREDICTED: 40S ribosomal protein S19-1 [Viti...   261   1e-67
gb|ABK21356.1| unknown [Picea sitchensis] gi|116780144|gb|ABK215...   260   2e-67
gb|AFK42492.1| unknown [Lotus japonicus]                              256   2e-66
ref|XP_002305397.1| predicted protein [Populus trichocarpa] gi|2...   256   4e-66

>gb|ACF06446.1| 40S ribosomal protein S19 [Elaeis guineensis]
          Length = 143

 Score =  261 bits (667), Expect = 1e-67
 Identities = 125/140 (89%), Positives = 131/140 (93%)
 Frame = +2

Query: 77  ETAKTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAASM 256
           ETA+TVKDVS HEFVKAY+AHLKRSGKMELPHWTDIVKTG FKELAPYDPDWYYIRAASM
Sbjct: 2   ETARTVKDVSAHEFVKAYAAHLKRSGKMELPHWTDIVKTGRFKELAPYDPDWYYIRAASM 61

Query: 257 ARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQMMNIVDLDPKGG 436
           ARKIYLR GIGVGGF+KIYGG KRNGSRPPHFCKSSG IARHILQQLQ M+I+D D KGG
Sbjct: 62  ARKIYLRHGIGVGGFQKIYGGRKRNGSRPPHFCKSSGAIARHILQQLQEMDIIDFDAKGG 121

Query: 437 RIITSNGRRDLDQVAGRVVV 496
           R+ITS GRRDLDQVAGRVVV
Sbjct: 122 RMITSQGRRDLDQVAGRVVV 141


>ref|XP_002269657.1| PREDICTED: 40S ribosomal protein S19-1 [Vitis vinifera]
           gi|147798403|emb|CAN70140.1| hypothetical protein
           VITISV_032083 [Vitis vinifera]
           gi|297738070|emb|CBI27271.3| unnamed protein product
           [Vitis vinifera]
          Length = 146

 Score =  261 bits (667), Expect = 1e-67
 Identities = 121/141 (85%), Positives = 135/141 (95%)
 Frame = +2

Query: 74  AETAKTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAAS 253
           A+ A+TVKDVSPHEFVKAYS+HLKRSGK+ELPHWTDIVKT TFKELAPYDPDWYY+RAAS
Sbjct: 4   AKAARTVKDVSPHEFVKAYSSHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYVRAAS 63

Query: 254 MARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQMMNIVDLDPKG 433
           MARKIYLRQG+GVGGFR+IYGGSKRNGSRPPHFCKSSG IARHILQQL+ MNI++ DP+G
Sbjct: 64  MARKIYLRQGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLEKMNIIENDPRG 123

Query: 434 GRIITSNGRRDLDQVAGRVVV 496
           GR ITS+G+RDLDQVAGR+VV
Sbjct: 124 GRRITSSGQRDLDQVAGRIVV 144


>gb|ABK21356.1| unknown [Picea sitchensis] gi|116780144|gb|ABK21566.1| unknown
           [Picea sitchensis] gi|116781508|gb|ABK22129.1| unknown
           [Picea sitchensis] gi|116785123|gb|ABK23603.1| unknown
           [Picea sitchensis]
          Length = 144

 Score =  260 bits (665), Expect = 2e-67
 Identities = 121/142 (85%), Positives = 134/142 (94%)
 Frame = +2

Query: 80  TAKTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAASMA 259
           TA TVKDVSPHEFV+AYSAHLKRSGK+ELPHWTD+VKT TFKELAPYDPDWYY+RAASMA
Sbjct: 3   TACTVKDVSPHEFVRAYSAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMA 62

Query: 260 RKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQMMNIVDLDPKGGR 439
           RKIYLR GIGVG FRKIYGGS+RNG+RPPHFCKSSG +ARHILQQL+ MNI+++DP GGR
Sbjct: 63  RKIYLRHGIGVGAFRKIYGGSQRNGARPPHFCKSSGSVARHILQQLEKMNIIEMDPNGGR 122

Query: 440 IITSNGRRDLDQVAGRVVVVAP 505
            ITS+G+RDLDQVAGRVVVVAP
Sbjct: 123 RITSSGQRDLDQVAGRVVVVAP 144


>gb|AFK42492.1| unknown [Lotus japonicus]
          Length = 144

 Score =  256 bits (655), Expect = 2e-66
 Identities = 122/142 (85%), Positives = 133/142 (93%)
 Frame = +2

Query: 80  TAKTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAASMA 259
           TA+TVKDVSPHEFVKAY+AHLKRSGKMELP WTDIVKT  FKELAPYDPDWYYIRAASMA
Sbjct: 3   TARTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYIRAASMA 62

Query: 260 RKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQMMNIVDLDPKGGR 439
           RKIYLR G+GVG F++IYGGS+RNGSRPPHFCKSSG IARHILQQLQ M+I++LD KGGR
Sbjct: 63  RKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQTMHIIELDNKGGR 122

Query: 440 IITSNGRRDLDQVAGRVVVVAP 505
            ITS+GRRDLDQVAGR+VVVAP
Sbjct: 123 KITSSGRRDLDQVAGRIVVVAP 144


>ref|XP_002305397.1| predicted protein [Populus trichocarpa] gi|222848361|gb|EEE85908.1|
           predicted protein [Populus trichocarpa]
          Length = 143

 Score =  256 bits (653), Expect = 4e-66
 Identities = 121/139 (87%), Positives = 131/139 (94%)
 Frame = +2

Query: 80  TAKTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAASMA 259
           TAKTVKDVSPHEFVKAYSAHLKRSGK+ELP WTDIVKT  FKELAPYDPDWYYIRAASMA
Sbjct: 3   TAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAASMA 62

Query: 260 RKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQMMNIVDLDPKGGR 439
           RKIYLR G+GVG FR+IYGGS+RNGSRPPHFCKSSG +ARHILQQLQ MNI+D+DPKGGR
Sbjct: 63  RKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKGGR 122

Query: 440 IITSNGRRDLDQVAGRVVV 496
            ITS+G+RDLDQVAGR+VV
Sbjct: 123 RITSSGQRDLDQVAGRIVV 141


Top