BLASTX nr result

ID: Cimicifuga21_contig00000170 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000170
         (1070 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06446.1| 40S ribosomal protein S19 [Elaeis guineensis]          268   1e-69
ref|XP_002284393.1| PREDICTED: 40S ribosomal protein S19-3 [Viti...   264   3e-68
ref|XP_002269657.1| PREDICTED: 40S ribosomal protein S19-1 [Viti...   264   3e-68
ref|XP_002305397.1| predicted protein [Populus trichocarpa] gi|2...   263   7e-68
ref|XP_002323893.1| predicted protein [Populus trichocarpa] gi|1...   263   7e-68

>gb|ACF06446.1| 40S ribosomal protein S19 [Elaeis guineensis]
          Length = 143

 Score =  268 bits (686), Expect = 1e-69
 Identities = 128/143 (89%), Positives = 134/143 (93%)
 Frame = +3

Query: 132 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAAS 311
           METARTVKDVS HEFVKAY+AHLKRSGKMELPHWTDIVKTG FKELAPYDPDWYYIRAAS
Sbjct: 1   METARTVKDVSAHEFVKAYAAHLKRSGKMELPHWTDIVKTGRFKELAPYDPDWYYIRAAS 60

Query: 312 MARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQTMNIVDLDPKG 491
           MARKIYLR GIGVGGF+KIYGG KRNGSRPPHFCKSSG IARHILQQLQ M+I+D D KG
Sbjct: 61  MARKIYLRHGIGVGGFQKIYGGRKRNGSRPPHFCKSSGAIARHILQQLQEMDIIDFDAKG 120

Query: 492 GRIITSSGRRDLDQVAGRIVVAP 560
           GR+ITS GRRDLDQVAGR+VVAP
Sbjct: 121 GRMITSQGRRDLDQVAGRVVVAP 143


>ref|XP_002284393.1| PREDICTED: 40S ribosomal protein S19-3 [Vitis vinifera]
           gi|147858266|emb|CAN83920.1| hypothetical protein
           VITISV_028810 [Vitis vinifera]
           gi|297733901|emb|CBI15148.3| unnamed protein product
           [Vitis vinifera]
          Length = 143

 Score =  264 bits (674), Expect = 3e-68
 Identities = 127/142 (89%), Positives = 133/142 (93%)
 Frame = +3

Query: 132 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAAS 311
           M TARTVKDVSPHEFV AY+AHLKRSGK+ELPHWTDIVKT TFKELAPYDPDWYYIRAAS
Sbjct: 1   MATARTVKDVSPHEFVNAYAAHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYIRAAS 60

Query: 312 MARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQTMNIVDLDPKG 491
           MARKIYLR GIGVG FR+IYGGSKRNGSRPPHFCKSSG IARHILQQLQTMNI++LD KG
Sbjct: 61  MARKIYLRGGIGVGAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQTMNIIELDSKG 120

Query: 492 GRIITSSGRRDLDQVAGRIVVA 557
           GR ITSSG+RDLDQVAGRI VA
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVA 142


>ref|XP_002269657.1| PREDICTED: 40S ribosomal protein S19-1 [Vitis vinifera]
           gi|147798403|emb|CAN70140.1| hypothetical protein
           VITISV_032083 [Vitis vinifera]
           gi|297738070|emb|CBI27271.3| unnamed protein product
           [Vitis vinifera]
          Length = 146

 Score =  264 bits (674), Expect = 3e-68
 Identities = 124/141 (87%), Positives = 135/141 (95%)
 Frame = +3

Query: 135 ETARTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAASM 314
           + ARTVKDVSPHEFVKAYS+HLKRSGK+ELPHWTDIVKT TFKELAPYDPDWYY+RAASM
Sbjct: 5   KAARTVKDVSPHEFVKAYSSHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYVRAASM 64

Query: 315 ARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQTMNIVDLDPKGG 494
           ARKIYLRQG+GVGGFR+IYGGSKRNGSRPPHFCKSSG IARHILQQL+ MNI++ DP+GG
Sbjct: 65  ARKIYLRQGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLEKMNIIENDPRGG 124

Query: 495 RIITSSGRRDLDQVAGRIVVA 557
           R ITSSG+RDLDQVAGRIVVA
Sbjct: 125 RRITSSGQRDLDQVAGRIVVA 145


>ref|XP_002305397.1| predicted protein [Populus trichocarpa] gi|222848361|gb|EEE85908.1|
           predicted protein [Populus trichocarpa]
          Length = 143

 Score =  263 bits (671), Expect = 7e-68
 Identities = 125/143 (87%), Positives = 134/143 (93%)
 Frame = +3

Query: 132 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAAS 311
           M TA+TVKDVSPHEFVKAYSAHLKRSGK+ELP WTDIVKT  FKELAPYDPDWYYIRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYSAHLKRSGKVELPPWTDIVKTAKFKELAPYDPDWYYIRAAS 60

Query: 312 MARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQTMNIVDLDPKG 491
           MARKIYLR G+GVG FR+IYGGS+RNGSRPPHFCKSSG +ARHILQQLQ MNI+D+DPKG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSQRNGSRPPHFCKSSGSVARHILQQLQNMNIIDVDPKG 120

Query: 492 GRIITSSGRRDLDQVAGRIVVAP 560
           GR ITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143


>ref|XP_002323893.1| predicted protein [Populus trichocarpa] gi|118487378|gb|ABK95517.1|
           unknown [Populus trichocarpa]
           gi|222866895|gb|EEF04026.1| predicted protein [Populus
           trichocarpa]
          Length = 143

 Score =  263 bits (671), Expect = 7e-68
 Identities = 124/143 (86%), Positives = 135/143 (94%)
 Frame = +3

Query: 132 METARTVKDVSPHEFVKAYSAHLKRSGKMELPHWTDIVKTGTFKELAPYDPDWYYIRAAS 311
           M TA++VKDVSPHEFVKAYSAHLKRSGK+ELP WTDIVKTG FKELAPYDPDWYY+RAAS
Sbjct: 1   MATAKSVKDVSPHEFVKAYSAHLKRSGKIELPLWTDIVKTGKFKELAPYDPDWYYVRAAS 60

Query: 312 MARKIYLRQGIGVGGFRKIYGGSKRNGSRPPHFCKSSGGIARHILQQLQTMNIVDLDPKG 491
           MARKIY+R G+GVG FR+IYGGSKRNGSRPPHFCKSSG IARHILQQLQ +NI+D+DPKG
Sbjct: 61  MARKIYIRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQNVNIIDIDPKG 120

Query: 492 GRIITSSGRRDLDQVAGRIVVAP 560
           GR ITSSG+RDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGQRDLDQVAGRIVVAP 143


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