BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000124
         (1322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   265   2e-68
gb|AEJ33935.1| chloroplast putative ribulose-1,5-bisphosphate ca...   265   2e-68
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   265   2e-68
gb|ABK15574.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...   265   2e-68
sp|P19311.1|RBS5_LEMGI RecName: Full=Ribulose bisphosphate carbo...   264   4e-68

>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
            subunit [Aralia elata]
          Length = 183

 Score =  265 bits (678), Expect = 2e-68
 Identities = 126/156 (80%), Positives = 140/156 (89%), Gaps = 1/156 (0%)
 Frame = -3

Query: 1125 MVAPFSGLKSTSAFPVTRKLNTDITSLPSNGGRVQCMKVWPPEGLLKFETLSYLPTLSTE 946
            MVAPF+GLKST+AFPVTRK+N DITSLPSNGGRVQCMKVWPP GL KFETLSYLP L+ E
Sbjct: 24   MVAPFTGLKSTAAFPVTRKVN-DITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPPLTNE 82

Query: 945  ALAKEIDYLIRNGWIPCLEFSLE-GYISRKYGSTPGYYDGRYWTMWKLPMYGCTDSSQVL 769
             LAKE+DYL+R+GW+PCLEF LE G++ R+   +PGYYDGRYWTMWKLPM+GCTDSSQVL
Sbjct: 83   ELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVL 142

Query: 768  AEVEEAKKEYPKAFVRIIGFDNKRQVQCISFIAFKP 661
             EVEE KKEYP AF+RIIGFDN RQVQCISFIAFKP
Sbjct: 143  NEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178


>gb|AEJ33935.1| chloroplast putative ribulose-1,5-bisphosphate carboxylase/oxygenase
            small subunit [Wolffia australiana]
          Length = 177

 Score =  265 bits (678), Expect = 2e-68
 Identities = 118/155 (76%), Positives = 141/155 (90%)
 Frame = -3

Query: 1125 MVAPFSGLKSTSAFPVTRKLNTDITSLPSNGGRVQCMKVWPPEGLLKFETLSYLPTLSTE 946
            MVAPF+GL+S++A P TRK N D+++L SNGG+ +CM+VWPPEGL KFETLSYLP LSTE
Sbjct: 22   MVAPFNGLRSSAALPATRKANADLSTLLSNGGKARCMQVWPPEGLKKFETLSYLPPLSTE 81

Query: 945  ALAKEIDYLIRNGWIPCLEFSLEGYISRKYGSTPGYYDGRYWTMWKLPMYGCTDSSQVLA 766
            ALAKE++YLIRNGWIPC+EFS EG++ R+Y ++PGYYDGRYWTMWKLPM+GCTD+SQV+A
Sbjct: 82   ALAKEVEYLIRNGWIPCIEFSKEGFVYREYHASPGYYDGRYWTMWKLPMFGCTDASQVIA 141

Query: 765  EVEEAKKEYPKAFVRIIGFDNKRQVQCISFIAFKP 661
            EVEEAKK YP  FVRIIGFDNKRQVQC+SFIA+KP
Sbjct: 142  EVEEAKKAYPDYFVRIIGFDNKRQVQCVSFIAYKP 176


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Panax
            ginseng]
          Length = 183

 Score =  265 bits (677), Expect = 2e-68
 Identities = 124/156 (79%), Positives = 141/156 (90%), Gaps = 1/156 (0%)
 Frame = -3

Query: 1125 MVAPFSGLKSTSAFPVTRKLNTDITSLPSNGGRVQCMKVWPPEGLLKFETLSYLPTLSTE 946
            MVAPF+GLKST+AFPVTRK+N DITSLPSNGGRVQCMKVWPP GL KFETLSYLP L+ E
Sbjct: 24   MVAPFTGLKSTAAFPVTRKVN-DITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQLTQE 82

Query: 945  ALAKEIDYLIRNGWIPCLEFSLE-GYISRKYGSTPGYYDGRYWTMWKLPMYGCTDSSQVL 769
             L+KE+DYL+R+GW+PCLEF LE G++ R++  +PGYYDGRYWTMWKLPM+GCTDSSQVL
Sbjct: 83   QLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSSQVL 142

Query: 768  AEVEEAKKEYPKAFVRIIGFDNKRQVQCISFIAFKP 661
             EVEE KKEYP A++RIIGFDN RQVQCISFIAFKP
Sbjct: 143  KEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKP 178


>gb|ABK15574.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
            [Camellia sinensis]
          Length = 176

 Score =  265 bits (677), Expect = 2e-68
 Identities = 123/156 (78%), Positives = 139/156 (89%), Gaps = 1/156 (0%)
 Frame = -3

Query: 1125 MVAPFSGLKSTSAFPVTRKLNTDITSLPSNGGRVQCMKVWPPEGLLKFETLSYLPTLSTE 946
            M APF+GLKSTSAFPVTRKL+TDITSL SNGGRVQCMKVWPP GL KFETLSYLP L+  
Sbjct: 18   MAAPFTGLKSTSAFPVTRKLDTDITSLASNGGRVQCMKVWPPLGLKKFETLSYLPPLTQA 77

Query: 945  ALAKEIDYLIRNGWIPCLEFSLE-GYISRKYGSTPGYYDGRYWTMWKLPMYGCTDSSQVL 769
             L KE+DYLIR GWIPCLEFS++ G++ R++  +PGYYDGRYWTMWKLPM+GCTDSSQVL
Sbjct: 78   QLGKEVDYLIRLGWIPCLEFSVQGGFVYREHNKSPGYYDGRYWTMWKLPMFGCTDSSQVL 137

Query: 768  AEVEEAKKEYPKAFVRIIGFDNKRQVQCISFIAFKP 661
             EVEE KKEYP++F+RIIGFDNKRQVQCISFI +KP
Sbjct: 138  KEVEECKKEYPQSFIRIIGFDNKRQVQCISFICYKP 173


>sp|P19311.1|RBS5_LEMGI RecName: Full=Ribulose bisphosphate carboxylase small chain SSU5A,
            chloroplastic; Short=RuBisCO small subunit SSU5A; Flags:
            Precursor gi|295820|emb|CAA35099.1| ribulose bisphosphate
            carboxylase [Lemna gibba]
          Length = 177

 Score =  264 bits (674), Expect = 4e-68
 Identities = 118/155 (76%), Positives = 139/155 (89%)
 Frame = -3

Query: 1125 MVAPFSGLKSTSAFPVTRKLNTDITSLPSNGGRVQCMKVWPPEGLLKFETLSYLPTLSTE 946
            MVAPF+GL+S+ AFP TRK N D+++LPSNGGRV CM+VWPPEGL KFETLSYLP LS E
Sbjct: 22   MVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVE 81

Query: 945  ALAKEIDYLIRNGWIPCLEFSLEGYISRKYGSTPGYYDGRYWTMWKLPMYGCTDSSQVLA 766
             LAKE+DYL+RN W+PC+EFS EG++ R+  ++PGYYDGRYWTMWKLPM+GCTD+SQV+A
Sbjct: 82   DLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIA 141

Query: 765  EVEEAKKEYPKAFVRIIGFDNKRQVQCISFIAFKP 661
            EVEEAKK YP+ FVRIIGFDNKRQVQCISFIA+KP
Sbjct: 142  EVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176