BLASTX nr result

ID: Cimicifuga21_contig00000030 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000030
         (1275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002868913.1| kelch repeat-containing F-box family protein...    60   2e-06

>ref|XP_002868913.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314749|gb|EFH45172.1| kelch
           repeat-containing F-box family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 389

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 68/216 (31%), Positives = 87/216 (40%), Gaps = 1/216 (0%)
 Frame = -1

Query: 993 IYMIGGDHSGKLEGSTDVFCFDTQSQPPFQWRKEKFHLLAKRCQPAVVAAHGKIFVFGSN 814
           IY IGG      E S+ V   D QS     W  E   +  +R  PA     GKI+V G  
Sbjct: 147 IYNIGGPTDK--EHSSIVSILDCQSHT---WG-EAPSMRVERRYPAANVLDGKIYVTGGC 200

Query: 813 ICRSKPKPWAEVFDPKLNLCTPLPEPPREVIEAYGSIDTAVVANGDTILLCMEDSLFSFD 634
              S P  W EVFDPK     P+  P  E+     S+  + V  G+ IL      L  + 
Sbjct: 201 KDCSNPSNWMEVFDPKTQTWEPVSSPGAEI--GGCSMHKSAVVEGE-ILFANSHGLI-YQ 256

Query: 633 VRNKLWGRVLTPLFSPSRWSYRSAPVDDILFMYCQGRVLAYDLGAEKWFQ-KPVKGLGIA 457
            +   W R+   +     W Y    V+D+L+ Y +G    YD  A  W   K VKGL   
Sbjct: 257 PKEGRWKRMEWDMDIGWVW-YSYCVVEDVLYYYYKGDFKWYDTKARLWRNLKGVKGL--- 312

Query: 456 SRGVIPRSELRHGHVVHIGNKTLCVVWYDEVKSHTC 349
                PR     G +V  G K + V W   V S  C
Sbjct: 313 -----PRFARCGGKMVDYGGK-MAVFWDKIVTSDGC 342


Top