BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00000019
         (1265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   308   2e-81
sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   305   2e-80
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c...   303   8e-80
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...   298   2e-78
ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|2...   294   4e-77

>ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
           vinifera]
          Length = 288

 Score =  308 bits (788), Expect = 2e-81
 Identities = 158/219 (72%), Positives = 183/219 (83%), Gaps = 5/219 (2%)
 Frame = +1

Query: 256 YDQEEELSNGRSDANFSPELKLFVGNLPFNVDSGELAGLFGQAGNVEVVEVIYDKLTGRS 435
           Y+Q+E++ +   + +FSP+LKLFVGNLPFNVDS  LAGLF QAGNVE+VEVIYDK+TGRS
Sbjct: 71  YEQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRS 130

Query: 436 RGFGFVTMSTVEEVEAAEQQFNGYELEGRSLRVNSGPPPPK--DDNFRAPRS---GGNFD 600
           RGFGFVTMSTVEEVEAA QQFNGYELEGR LRVNSGPPP +  + NFR   S   G N +
Sbjct: 131 RGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTN 190

Query: 601 SSPNRGGGSFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFV 780
               RGG + +S+NR+YVGNLSW VDD ALE LFSEQGKVT+A+V+YDRE+GRSRGFGFV
Sbjct: 191 FRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFV 250

Query: 781 TYSSSEEVNNAISSLNGVDLKGRDIRVSMAEARPPRRQF 897
           TY+S+EEVN AI SL+GVDL GR IRV+MAEAR PRRQF
Sbjct: 251 TYNSAEEVNRAIESLDGVDLNGRSIRVTMAEAR-PRRQF 288


>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
           Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
           29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  305 bits (781), Expect = 2e-80
 Identities = 160/218 (73%), Positives = 180/218 (82%), Gaps = 4/218 (1%)
 Frame = +1

Query: 256 YDQEEELSNG----RSDANFSPELKLFVGNLPFNVDSGELAGLFGQAGNVEVVEVIYDKL 423
           +DQ E++ +G      + NFSP+LK+FVGNLPF+ DS  LA LF +AGNVE+VEVIYDKL
Sbjct: 64  FDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKL 123

Query: 424 TGRSRGFGFVTMSTVEEVEAAEQQFNGYELEGRSLRVNSGPPPPKDDNFRAPRSGGNFDS 603
           TGRSRGFGFVTMS+ EEVEAA QQFNGYEL+GR+LRVNSGPPP K +N  +   GG+   
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN--SSFRGGS--- 178

Query: 604 SPNRGGGSFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVT 783
              RGGGSFDSSNRVYVGNL+W VD  ALE LFSEQGKV DAKVVYDR+SGRSRGFGFVT
Sbjct: 179 ---RGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 235

Query: 784 YSSSEEVNNAISSLNGVDLKGRDIRVSMAEARPPRRQF 897
           YSS+EEVNNAI SL+GVDL GR IRVS AEARPPRRQF
Sbjct: 236 YSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273


>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
           Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
           RNA binding protein 30 [Nicotiana plumbaginifolia]
          Length = 279

 Score =  303 bits (775), Expect = 8e-80
 Identities = 159/218 (72%), Positives = 180/218 (82%), Gaps = 4/218 (1%)
 Frame = +1

Query: 256 YDQEEELSNG----RSDANFSPELKLFVGNLPFNVDSGELAGLFGQAGNVEVVEVIYDKL 423
           +DQ E++ +G      + NFSP+LK+FVGNL F+ DS  LA LF +AGNVE+VEVIYDKL
Sbjct: 64  FDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKL 123

Query: 424 TGRSRGFGFVTMSTVEEVEAAEQQFNGYELEGRSLRVNSGPPPPKDDNFRAPRSGGNFDS 603
           TGRSRGFGFVTMS+ EEVEAA QQFNGYEL+GR+LRVNSGPPP K +N  + R   +F  
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN-SSFRENSSFRG 182

Query: 604 SPNRGGGSFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVT 783
             +RGGGSFDSSNRVYVGNL+W VD  ALE LFSEQGKV DAKVVYDR+SGRSRGFGFVT
Sbjct: 183 G-SRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 241

Query: 784 YSSSEEVNNAISSLNGVDLKGRDIRVSMAEARPPRRQF 897
           YSS+EEVNNAI SL+GVDL GR IRVS AEARPPRRQF
Sbjct: 242 YSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279


>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223541388|gb|EEF42939.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 280

 Score =  298 bits (764), Expect = 2e-78
 Identities = 154/215 (71%), Positives = 179/215 (83%), Gaps = 1/215 (0%)
 Frame = +1

Query: 256 YDQEEELSNGRSDANFSPELKLFVGNLPFNVDSGELAGLFGQAGNVEVVEVIYDKLTGRS 435
           + QEE++S+   +++FS +LKLFVGNLPFNVDS +LAGLF  AGNVE+VEVIYDK+TGRS
Sbjct: 73  FGQEEDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRS 132

Query: 436 RGFGFVTMSTVEEVEAAEQQFNGYELEGRSLRVNSGPPPPKDDNF-RAPRSGGNFDSSPN 612
           RGFGFVTMS+++EVEAA QQFNGYELEGR+LRVNSGPPP ++ +F R+PR GG       
Sbjct: 133 RGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSRSPRFGG------G 186

Query: 613 RGGGSFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVTYSS 792
            GGG     NR+YVGNLSW+VD+ ALE  FSEQGKV DAKVVYDRESGRSRGFGFVTYSS
Sbjct: 187 GGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSS 246

Query: 793 SEEVNNAISSLNGVDLKGRDIRVSMAEARPPRRQF 897
           +EEV NAI SLNG +L GR IRVS+AEAR PRRQF
Sbjct: 247 AEEVENAIDSLNGAELDGRAIRVSVAEAR-PRRQF 280


>ref|XP_002326357.1| predicted protein [Populus trichocarpa] gi|222833550|gb|EEE72027.1|
           predicted protein [Populus trichocarpa]
          Length = 286

 Score =  294 bits (752), Expect = 4e-77
 Identities = 148/214 (69%), Positives = 176/214 (82%), Gaps = 2/214 (0%)
 Frame = +1

Query: 256 YDQEEELSNGRSDANFSPELKLFVGNLPFNVDSGELAGLFGQAGNVEVVEVIYDKLTGRS 435
           + QEE++     + +FSP+L+LFVGNLPFNV+S +LA LF  AGNVE+VEV YDK+TGRS
Sbjct: 72  FGQEEDVFGDGDEPSFSPDLQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRS 131

Query: 436 RGFGFVTMSTVEEVEAAEQQFNGYELEGRSLRVNSGPPPPKDDNF-RAPRSGGNFDSSPN 612
           RGFGFVTMST+EEVEAA QQFNGYEL+GR LRVNSGPPP ++ +F R P+   +F   P 
Sbjct: 132 RGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPG 191

Query: 613 -RGGGSFDSSNRVYVGNLSWAVDDQALEDLFSEQGKVTDAKVVYDRESGRSRGFGFVTYS 789
            RGG +FDSSNRVYVGNLSW VDD ALE LF E+GKV DAKVVYDR+SGRS+GFGFVTYS
Sbjct: 192 ARGGETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYS 251

Query: 790 SSEEVNNAISSLNGVDLKGRDIRVSMAEARPPRR 891
           S+EEV +A+ SLNG +L GR IRVS+AEA+P RR
Sbjct: 252 SAEEVEDAVDSLNGAELDGRAIRVSVAEAKPRRR 285