BLASTX nr result
ID: Chrysanthemum22_contig00048453
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00048453
(1289 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009352236.1| L protein [Tomato yellow mottle-associated v... 446 e-138
ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect v... 280 5e-80
ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus] >gi... 278 3e-79
ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru... 217 2e-58
ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect v... 175 5e-44
ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] >gi|... 152 5e-36
ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic ... 149 4e-35
gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdov... 131 5e-29
ref|YP_009300689.1| RNA-dependent RNA polymerase [Wuhan Insect v... 105 2e-20
gb|ARS22495.1| putative L protein [Maize associated rhabdovirus] 80 3e-12
ref|NP_597914.1| polymerase [Northern cereal mosaic cytorhabdovi... 76 8e-11
gb|ADE61677.1| polymerase protein [Northern cereal mosaic cytorh... 76 8e-11
gb|ATN96443.1| L protein [Maize yellow striate virus] 72 1e-09
gb|ATN96453.1| polymerase protein [Maize yellow striate virus] 72 1e-09
gb|ACT21686.1| polymerase [Barley yellow striate mosaic cytorhab... 67 7e-08
ref|YP_009362280.1| RNA-dependent RNA polymerase [Colocasia bobo... 67 7e-08
ref|YP_009177231.1| L protein [Barley yellow striate mosaic cyto... 66 9e-08
gb|APR74654.1| L protein [Rice stripe mosaic virus] 60 6e-06
>ref|YP_009352236.1| L protein [Tomato yellow mottle-associated virus]
gb|AQY17505.1| L protein [Tomato yellow mottle-associated virus]
Length = 2085
Score = 446 bits (1146), Expect = e-138
Identities = 219/429 (51%), Positives = 300/429 (69%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
NMYLSN++R V RFKHF+QCCYECI PI+EDFVDL S+KA+ IP+F+DN YL+T S
Sbjct: 1272 NMYLSNKIRGEEVVARFKHFRQCCYECIHPIEEDFVDLSSEKALSVIPSFKDNPYLYTPS 1331
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
S+IR+LE+ISP+ L+DR L++E+Y I RK V+L R ICDRIIKDIV G+ ++THV+
Sbjct: 1332 SRIRVLERISPLYELSDRELSHEDYDNISGRRKAVLLHRSICDRIIKDIVTGQKSETHVS 1391
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNI 542
VGLTSVK+YERTM+FKL PR M+ TVM E+R+V+ WTV++SHPER SD E++RVM +I
Sbjct: 1392 VGLTSVKAYERTMYFKLDPRIMVDTVMMELRRVSKWTVLRSHPERTDASDNEIERVMIDI 1451
Query: 543 ISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRR 722
++SAD+H FLGLAMF+CWEETS +PE+V P+TNP+SV SAC+S++ S++S++ +R
Sbjct: 1452 LNSADTHGFLGLAMFFCWEETSLAYSRIYPEVVPPATNPISVFSACESVRTSMISLVSKR 1511
Query: 723 FTSGIRRHSIISDDEKNDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRLGMC 902
+G++R II DE+N+ LIYKFL+ D + RC+ACI + + D+ R+ C
Sbjct: 1512 IVTGLKRSEIILHDEQNEKLIYKFLILDDLEKATRCKACISMIERSELSDVWRTLSFYSC 1571
Query: 903 VYGHRLSDNLTTYPWIRSFVTVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSD 1082
YGH++SD + PWI+S+VTVERLRKDC + + + +F + L SSD
Sbjct: 1572 HYGHKMSDWMKKSPWIKSYVTVERLRKDCDNISNERAADRIRLNSSTKKFNFNITLLSSD 1631
Query: 1083 RMIRRMQRTQYRIPKTRDSDPFCFKPGHPNIFHLLTIMTMPTSTVYKIGDVMCDVRPLIR 1262
+ R + IP SD + G ++HL T+M+MPTST YK+ D++ I
Sbjct: 1632 TLRIRPESNDKAIPPEIVSD---VRSGF-TVYHLATVMSMPTSTSYKMQDIIGGCGIQIL 1687
Query: 1263 GRDCLCIGD 1289
GR CLCIGD
Sbjct: 1688 GRKCLCIGD 1696
>ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
gb|AJG39191.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
Length = 2079
Score = 280 bits (715), Expect = 5e-80
Identities = 160/437 (36%), Positives = 254/437 (58%), Gaps = 8/437 (1%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
NMY++NR+R V +FKH+KQ CY CI PI EDF+D+PS KA +P+ +DN YL+
Sbjct: 1270 NMYVTNRIRGGDVVTKFKHYKQSCYRCINPIPEDFIDIPSGKAADTVPSQKDNPYLYASK 1329
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
+ IRI E+ISP+ ++ R + ++Y + ++ V L +I DRI+ D+V DT V+
Sbjct: 1330 ATIRISEKISPLFVMSPREFSYDQYQSMTNMQRLVWLHDIIADRIVSDVVSNSSDDTAVS 1389
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNI 542
+GL V+SYERTM+ KL+P++++ V+S + VA W V+KS S D+++ R + NI
Sbjct: 1390 IGLHDVRSYERTMYLKLNPKYLINKVLSRLLIVAEWGVIKSGHVGLS-MDDDIKRTLINI 1448
Query: 543 ISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRR 722
+ +A+ SFLGL MFYCWEE+S ++ +PE++ P+TNP+S SAC++++ +++ + R
Sbjct: 1449 LENANPTSFLGLGMFYCWEESSSRM-DVYPEMIRPNTNPISSASACEAMQKNMIGLSLGR 1507
Query: 723 FTSGIRRHSIISDDEKNDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRLGMC 902
R +I++D+EK + +I K LY+ ++C C R ++L D +R R C
Sbjct: 1508 KWKDSNRIAILADEEKYNFVIVKMFLYNYLKSHSQCNLCRRLTSSLQIGD-VRYLRTLTC 1566
Query: 903 VYGHRLSDNLTTYPWIRSFVTVERLRKDCSSFDQSVNKKDLPFT--IKGTEMSFLVMLAS 1076
GH + D + P+ S VTVERLRKD S+ N+ T +KG + + + S
Sbjct: 1567 DRGHVVFDRMIKVPYSASNVTVERLRKDVSN-TMRANRSRARITNPMKG---QYSIEMVS 1622
Query: 1077 SDRMIRRMQRTQYRIPKTRDSDPFCFKPGHP------NIFHLLTIMTMPTSTVYKIGDVM 1238
S +M R QY RD D + +P +I+ L+ + +PT+T YK D++
Sbjct: 1623 STQMGR-----QY--SSVRDQDNGILEYDYPQDYHRYSIYQLIMLTQLPTNTRYKYSDIL 1675
Query: 1239 CDVRPLIRGRDCLCIGD 1289
V I + C+GD
Sbjct: 1676 ARVGKRIVNSNVFCLGD 1692
>ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus]
gb|AKD44217.1| polymerase protein [Alfalfa dwarf virus]
Length = 2085
Score = 278 bits (710), Expect = 3e-79
Identities = 148/430 (34%), Positives = 245/430 (56%), Gaps = 1/430 (0%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
N+ + +R + RFKH+KQCCY C++P+ +DF+D+P D+ + +P+ + N+YLF S
Sbjct: 1267 NLEIVKAIRNQDPIKRFKHYKQCCYTCVKPVQDDFIDIPDDRVLTAVPSRKSNKYLFVKS 1326
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
KIRILE SP++ L + +EY + P KR+ L+ +I D+I+ DI+ DT +
Sbjct: 1327 EKIRILEDRSPLSRLNAIAMETQEYDAMSPRMKRLWLQDIIADKIVSDIMGQSSEDTSME 1386
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNI 542
L VKS+ERTM+ KL PR+++ VM + A W ++S + + E+ R + +I
Sbjct: 1387 ASLLDVKSFERTMYLKLDPRYIIDCVMGGLSLCAEWRWLESTGHQKDCTGGEISRSIISI 1446
Query: 543 ISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRR 722
+ A S S +GL MF+CWE+++ + +++PEIV P +NP+++++ C ++K S++S+ ++
Sbjct: 1447 VRGASSMSMIGLGMFFCWEDSAARFANTYPEIVTPISNPLTIETCCSAVKTSIISLALKK 1506
Query: 723 FTSGIRRHSIISDDEKNDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRLGMC 902
S R SII+DDEK+ + K LLY ++Q++C C R ++ + + D I+ R C
Sbjct: 1507 RWSLPDRISIIADDEKSSMWVMKKLLYQFRIKQDKCLDCRRLISKMTSTD-IKRMRTLQC 1565
Query: 903 VYGHRLSDNLTTYPWIRSFVTVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSD 1082
H+ D PW S+VT+ERLRKDC S D + K + +K + +F L +
Sbjct: 1566 RQSHKPFDRAANTPWRSSYVTIERLRKDCDSTDIQ-SSKAVKGHMKKMKANFCTALITKG 1624
Query: 1083 RMIRRMQRTQYRIPKTRDSDPFCFKPGHP-NIFHLLTIMTMPTSTVYKIGDVMCDVRPLI 1259
+I R + P D P + H + +HL+ I T+PT T K ++ I
Sbjct: 1625 DII---MRPEVATPPADDPLPSFPEDFHRFSEYHLMNIDTVPTRTKSKCTVLLNPYLDDI 1681
Query: 1260 RGRDCLCIGD 1289
+GRD +GD
Sbjct: 1682 KGRDVFVVGD 1691
>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
Length = 2089
Score = 217 bits (553), Expect = 2e-58
Identities = 129/431 (29%), Positives = 220/431 (51%), Gaps = 2/431 (0%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
N+++S++ R+ + +F+H+KQ CYEC+ +DE F+D+P + IP ++N YL+
Sbjct: 1277 NIWISDQNRQCNPISKFQHYKQSCYECVNIVDETFIDIPDKRTSDLIPHRKENNYLYVKE 1336
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
+++ SP+ SL LTN+ Y L+ + K L I D + DI G ++ +
Sbjct: 1337 DQMQDTLAYSPLISLKLTYLTNQMYQLMEASTKYRWLVETIADLVASDICSGNQNESFFS 1396
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNI 542
GLT VKSYERTMF K++P+ + +V++ +R A W + R + +++ R + +
Sbjct: 1397 TGLTDVKSYERTMFLKINPKDLFFSVLNRLRTFARWKCASTKVSRMP-TIKDIQRYLESY 1455
Query: 543 ISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRR 722
+ +S GL+MFY WEET +K + I+ P+T P S+ S+C+S++ +L+ M+
Sbjct: 1456 LVRVESDCMSGLSMFYGWEET-YKKMNFHRAIILPNTVPASLFSSCESVRKTLIGMMVDE 1514
Query: 723 FTSGIRRHSIISDDEKNDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRLGMC 902
R + I +D KN+ I K ++ D + RC CI V ++ L+ S +C
Sbjct: 1515 DAYMARENYYIPEDTKNNRFIIKLMISDYITTKTRCEPCILTVFNTESSTLLESLYSLVC 1574
Query: 903 VYGHRL-SDNLTTYPWIRSFVTVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASS 1079
GH + + + Y +S VT+ERLRKDC+S +S + + + L +
Sbjct: 1575 SEGHMVFQEKMKIY---QSHVTIERLRKDCASGMESKKTSFARTDLIPLPQNTVADLINF 1631
Query: 1080 DRMIRRMQRTQYRIP-KTRDSDPFCFKPGHPNIFHLLTIMTMPTSTVYKIGDVMCDVRPL 1256
DRM +R + S + N L I ++PTS YK ++ PL
Sbjct: 1632 DRMRQRQINWGSALALSPPGSKVMSDGQSYTNQTSLRKIYSLPTSANYKYMELFSRYLPL 1691
Query: 1257 IRGRDCLCIGD 1289
I+G++ +GD
Sbjct: 1692 IKGKNTFLVGD 1702
>ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
gb|AJG39185.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
Length = 2098
Score = 175 bits (444), Expect = 5e-44
Identities = 131/437 (29%), Positives = 217/437 (49%), Gaps = 8/437 (1%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
NM L + ++ + + HFKQ CY C+ +DE FVDLP ++IP+ + N YLF
Sbjct: 1276 NMRLMSWLKYEEWIPKVIHFKQTCYCCVTKLDESFVDLPDPLTNRYIPSRKTNPYLFVSG 1335
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
+ + ++ P+ S + V+ EEYV + K L V+ D+I DI+ + D +
Sbjct: 1336 KLLTEVHKMRPLLSRSLSVMPVEEYVRMDCKDKMRWLVDVVSDKIYLDIISQRGEDNSFS 1395
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNI 542
+ LT VK+YERTMF KLSPR + + ++ ++ + + T+ K+ R + ++DR ++ +
Sbjct: 1396 LCLTDVKAYERTMFLKLSPREVYLCLIDKLLRHSDMTMTKTVSGRRAVGKIQVDRALA-L 1454
Query: 543 ISSADSHSFLGLAMFYCWEETSFKL-CSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRR 719
I S SFLGL MFY W ET K+ SSF V P+T P++ +S C + + +L +I
Sbjct: 1455 IHSCPVSSFLGLGMFYSWSETIQKMHFSSF--CVMPNTFPITTESMCMAARTTLSGLIEV 1512
Query: 720 RFTSGIRRHSIISDDEKNDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRLGM 899
++ R +++ D I+K + R ++C CI +A D+ M
Sbjct: 1513 QWGRRDRFSNVLVYDFAKALHIHKLFSWTVISRYSKCNDCIVAIADTDSGAFGTDELTIM 1572
Query: 900 CVYGHRLSDNLTTYPWIRSFVTVERLRKDCSSFDQSVNKKDLPFTI-----KGTEMSFLV 1064
C GH + + + I S+VT+ERLRKD + S+ +D+ I + + MS
Sbjct: 1573 CCSGHDAMELIRSKCKI-SYVTLERLRKDAEN-AVSIGCEDIASKINFSYPEMSRMSRTE 1630
Query: 1065 MLASSDRMIRRMQRTQYRIPKTRDSDP--FCFKPGHPNIFHLLTIMTMPTSTVYKIGDVM 1238
+ D R +R T S FC + L +++ PTST Y+ +++
Sbjct: 1631 ITTLIDFRRMRHDLVAWRCDMTLPSRSLVFCNQNRLVTTSSLHKVLSYPTSTAYRYVEIL 1690
Query: 1239 CDVRPLIRGRDCLCIGD 1289
+IRGR + +GD
Sbjct: 1691 SAYGTVIRGR-VMVVGD 1706
>ref|YP_002308376.1| L protein [Lettuce yellow mottle virus]
gb|ABV56129.1| L protein [Lettuce yellow mottle virus]
Length = 2068
Score = 152 bits (383), Expect = 5e-36
Identities = 114/396 (28%), Positives = 182/396 (45%), Gaps = 3/396 (0%)
Frame = +3
Query: 57 HFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQISPITSLTDR 236
H+KQ CY CI P+DE+F D+ S + IP+ + N+YLF KI ++ + P
Sbjct: 1286 HYKQICYSCINPLDEEFYDIQSSRLPLLIPSKKKNKYLFVPKEKISMVLEYLPHAGWDLG 1345
Query: 237 VLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTSVKSYERTMFFKLS 416
L+++ + P K L I D I+ D+ ++ TV L VK + R +
Sbjct: 1346 KLSDDALDSMNPRTKLQWLTDAIADNIMIDVTGPAGEESFTTVSLMDVKEHNRLFYLTAR 1405
Query: 417 PRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNIISSADSHSFLGLAMFYCW 596
P+ + V + I +A W M S + + +DE + R ++ + G+ F+ W
Sbjct: 1406 PKDVYDQVCNRILILAEWRCM-SKSDWKTPTDESIVRAAEALLVDTPVTRWYGMTGFFSW 1464
Query: 597 EETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMI--RRRFTSGIRRHSIISDDEK 770
+S ++PEI P T PV+ SAC SI+ SLL +I R+F S R+ IIS+D K
Sbjct: 1465 -PSSMMHYYAYPEIQEPDTIPVTSFSACRSIRQSLLGLIGSTRKFPS--RQTRIISEDVK 1521
Query: 771 NDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIR-SFRLGMCVYGHRLSDNLTTYPW 947
+ K +++D + CRAC R V L TH+L R MC H +
Sbjct: 1522 TSKMTLKLMVFDWIKKNTTCRACWRSVGVLSTHNLANLDTRTFMCAQRHFPFQRFNSKSV 1581
Query: 948 IRSFVTVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSDRMIRRMQRTQYRIPK 1127
++S +T++ LRK D + L TI ++ + L S I R + + P
Sbjct: 1582 MKSRITLDSLRKSIDIKDDGEKESQLRSTIHPLTLTTCITLFESS--IIRAEIIPFCDP- 1638
Query: 1128 TRDSDPFCFKPGHPNIFHLLTIMTMPTSTVYKIGDV 1235
D D +P H L +++PT+ YK ++
Sbjct: 1639 -IDDDKITVRPIEGVDLHKL--VSLPTNASYKYMEI 1671
>ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
sp|Q4W382.1|L_LNYV3 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
AltName: Full=Large structural protein; AltName:
Full=Replicase; AltName: Full=Transcriptase; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
Includes: RecName: Full=GDP
polyribonucleotidyltransferase; Includes: RecName:
Full=Cap-specific mRNA
(nucleoside-2'-O-)-methyltransferase 2
emb|CAG34091.1| putative polymerase [Lettuce necrotic yellows virus]
emb|CAI30426.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
Length = 2068
Score = 149 bits (376), Expect = 4e-35
Identities = 93/316 (29%), Positives = 156/316 (49%), Gaps = 3/316 (0%)
Frame = +3
Query: 57 HFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQISPITSLTDR 236
H+KQ CY CI P+DE F D+ S K + IP+ + N+YL+ +KI + + P S
Sbjct: 1286 HYKQTCYSCINPLDESFYDVKSSKLSQLIPSKKTNKYLYVPEAKISMTLEHVPAKSWEFG 1345
Query: 237 VLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTSVKSYERTMFFKLS 416
L+++ + + + L + D ++ DI+ +++ T L +K + R + +
Sbjct: 1346 TLSSDGFDQLSVNLRLQWLTDAVADNVVIDILNPAGEESYTTTSLMDIKEHNRLFYLTIR 1405
Query: 417 PRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNIISSADSHSFLGLAMFYCW 596
PR + + I +A W M S + + + E + R II + G+ F+ W
Sbjct: 1406 PRDFYDQLCNRILILAEWRCM-SLSDWKTPTTEAISRAAEAIIGDTPISRWYGVTGFFSW 1464
Query: 597 EETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMI--RRRFTSGIRRHSIISDDEK 770
+S + +PEI P + PV+ SAC S++ SLL ++ R+F R I S+D K
Sbjct: 1465 -PSSMERYYVYPEIQEPDSIPVTALSACRSVRNSLLGLLGSSRKFRG--RNTRIFSEDAK 1521
Query: 771 NDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRLG-MCVYGHRLSDNLTTYPW 947
L K ++YD ++ +CRAC RE+ + H L + +C GH ++ L
Sbjct: 1522 ASKLSLKLMVYDWVKKKKKCRACHREIGIMSAHQLSSTLPNSIICPKGHYVTQGLKDLDI 1581
Query: 948 IRSFVTVERLRKDCSS 995
+RS VT++ LRK CSS
Sbjct: 1582 MRSRVTLDSLRKCCSS 1597
>gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdovirus 1]
Length = 2071
Score = 131 bits (329), Expect = 5e-29
Identities = 96/397 (24%), Positives = 178/397 (44%), Gaps = 3/397 (0%)
Frame = +3
Query: 57 HFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQISPITSLTDR 236
HF Q CY CI P+DE F DL +A + IP+ + N YL+ + K+ + + P
Sbjct: 1287 HFNQSCYHCISPLDETFHDLRDGEAARVIPSNKTNRYLYVRAEKVSLKLYLPPFPGWITG 1346
Query: 237 VLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTSVKSYERTMFFKLS 416
+ E + + ++ L + D I DI ++T L +K + R + +S
Sbjct: 1347 TMPPSEMLRMTNLERKTWLVESVVDNICIDIQGATSESNYLTTALLDIKEHNRLFYLSVS 1406
Query: 417 PRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNIISSADSHSFLGLAMFYCW 596
P + T+ S + +A W + S + + ++R ++ +I ++ G+A F+ W
Sbjct: 1407 PEAVYNTLCSRMIMMAEWRCLTSADWKVP-TASSIERAITAMIGDMNTDKLSGMAGFFTW 1465
Query: 597 EETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRFTSGIRR-HSIISDDEKN 773
E + K EIV P T PV+V SAC +IK SL++++ T ++R H I+ ++ K
Sbjct: 1466 PE-AMKRYYFANEIVEPDTIPVNVASACKAIKISLINLLSSGKTFDVKRQHYILLEETKT 1524
Query: 774 DTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRS-FRLGMCVYGHRLSDNLTTYPWI 950
L+ K ++Y+ + C+R + + +DL S L C H L
Sbjct: 1525 SKLVLKMMIYEILRARTSRWCCLRVIGNMSPYDLANSNASLLTCHNSHVLFPKGVEGMIN 1584
Query: 951 RSFVTVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSDRMIRRMQRTQYRIPKT 1130
R+ +T++ L+K S++ +++ T +L +S R+ + ++
Sbjct: 1585 RAQITMDALKK-------SIDSEEIQDTYHVRRELIQPLLETSCRIGFSSSLFRAQLILN 1637
Query: 1131 RDSDPFCFKPGHPN-IFHLLTIMTMPTSTVYKIGDVM 1238
+ D F P+ L + ++PT YK D++
Sbjct: 1638 PNVDDHRFVSVRPSGAGDLCKLFSLPTGAEYKYTDIV 1674
>ref|YP_009300689.1| RNA-dependent RNA polymerase [Wuhan Insect virus 4]
gb|AJG39179.1| RNA-dependent RNA polymerase [Wuhan Insect virus 4]
Length = 2105
Score = 105 bits (262), Expect = 2e-20
Identities = 100/447 (22%), Positives = 188/447 (42%), Gaps = 21/447 (4%)
Frame = +3
Query: 12 LSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKI 191
+++ R TR + R H+K+ C C +D+ F D+ + ++IP+ N YL+ + ++
Sbjct: 1296 ITSGFRSTR-LPRVIHWKETCNRCTSVVDDSFSDIKFCGSWRYIPSKPQNRYLYVEEDRL 1354
Query: 192 RILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIV----KGKITDTHV 359
++I P S+ +R +T EY + K + I D+I+ I G++ D
Sbjct: 1355 SYNKEIRPFLSMMNRYMTEGEYNRMSDVTKYCWMIDSISDKIVSQISTTQDAGELDD--- 1411
Query: 360 TVGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSN 539
V L + R + K+ P + V +++ +A +++ + + E L
Sbjct: 1412 QVDLHGGDIFNRVAYLKVDPHDLFEEVSNKLIYIAMGSILVK-GDFILPNAEALKERCQT 1470
Query: 540 IISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRR 719
+IS +F+GL + Y W ET + P +P S++ AC++ + L S I
Sbjct: 1471 MISDCPVGNFIGLGLLYSWAET--RQMMDLDANWEPDDDPPSLRGACEASRRVLYSYI-S 1527
Query: 720 RFTSGIRRHSIIS--DDEKNDTLIYKFLLYDQFVR-QNRCRACIREVATLDTHDLIRSFR 890
+ +R + D+ K+ L YK + + + + C C+ E+ + +
Sbjct: 1528 NIPAALRPRKTFNLVDEMKDIGLCYKLIACQKLMSYEGYCSYCMIELMSAPVREYTEQIL 1587
Query: 891 LGMCVYGH------RLSDNLTTYPWIRSFVTVERLRKDCSSFDQSV----NKKDLPFTIK 1040
+C GH RL NL S+V+++RLRKDC + +S+ K + +K
Sbjct: 1588 HAICKRGHHVLERYRLKVNL-------SYVSMDRLRKDCMAHVRSIKEVTKKMNRQINLK 1640
Query: 1041 GTEMSFLVMLASSDRMIRRMQRTQYRIPKTR----DSDPFCFKPGHPNIFHLLTIMTMPT 1208
+ L R+ RI DS+ + ++ ++T PT
Sbjct: 1641 YDHLITLFRTTEHRPKFYRVSDNALRIASDARLRFDSESMLYSE-----TDIMKVITKPT 1695
Query: 1209 STVYKIGDVMCDVRPLIRGRDCLCIGD 1289
S +YK ++ +R D L +GD
Sbjct: 1696 SALYKYSEIFNHLRLKEFKSDILLLGD 1722
>gb|ARS22495.1| putative L protein [Maize associated rhabdovirus]
Length = 2066
Score = 80.5 bits (197), Expect = 3e-12
Identities = 73/282 (25%), Positives = 129/282 (45%), Gaps = 8/282 (2%)
Frame = +3
Query: 18 NRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRI 197
NR + K F+ C ECI P+D DL V IP+ N YL+ D +I +
Sbjct: 1260 NRAMSSNHRKMLKFFRSCT-ECILPVDNPKEDLIEALTVDDIPSRPKNPYLYVDKEQIHL 1318
Query: 198 LEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTS 377
+ ++ + S + ++++++ P R L ++ ++ +I+ T+ +T
Sbjct: 1319 VHKLE-LESYENIPSVSKQFIVDNPGIGRNFLMEILAIKVASNILFANKTELG---EITD 1374
Query: 378 VKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPE----RFSYSDEELDRVMSNII 545
V RT+F KL+P H +TV+ A W S P S + + +S I
Sbjct: 1375 VSGIGRTVFLKLNPLHTFLTVLK-----ALWIGASSGPRISGGEIFPSWNYMKKTISRRI 1429
Query: 546 SSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRF 725
A + +FL LA FY W++T ++ S V P + P + S + K SL+ ++
Sbjct: 1430 WEAPAAAFLTLAGFYLWDDT-IRVLSCSKWAVMPLSYPATPHSVSQAAKNSLIRLL--HM 1486
Query: 726 TSGIRRHS--IISDDEKND--TLIYKFLLYDQFVRQNRCRAC 839
T +RR S ++S K D L+ LL+ + + + +C++C
Sbjct: 1487 TKELRRPSSWLVSPLIKIDPGLLVKGNLLFWKGLPKTKCQSC 1528
>ref|NP_597914.1| polymerase [Northern cereal mosaic cytorhabdovirus]
Length = 2058
Score = 75.9 bits (185), Expect = 8e-11
Identities = 77/287 (26%), Positives = 123/287 (42%), Gaps = 6/287 (2%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
N LS+ R+ V R C CI+P+DE DLP+ + IP+ DN YL+ +
Sbjct: 1258 NRLLSSEPRKIVRVYR------TCPHCIKPVDEPKEDLPTPLTEEDIPSRPDNPYLYVEQ 1311
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
KI ++ + + + + + Y+L P R +L ++ R+ I+
Sbjct: 1312 EKIALVHK-RELDNYESLPIIHRSYLLTYPHIGRRLLTEILATRVATSIL---YNSQEAE 1367
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFS----YSDEELDRV 530
G+T + RT+F KL +T + I W + S P S S L +
Sbjct: 1368 SGMTDIAGLSRTIFLKLDIYTTFLTAIKMI-----WIGISSTPRVMSGEVFPSWSFLKKS 1422
Query: 531 MSNIISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSM 710
+ I + SF LA FY WEET +L S P V P + P + S + K SL+ +
Sbjct: 1423 IIRRIWESPPSSFSILAGFYLWEETVREL-SDLPWAVMPLSYPATPTSIGIAAKNSLIRL 1481
Query: 711 IRRRFTSGIRRHSIISDDEKND--TLIYKFLLYDQFVRQNRCRACIR 845
++ I I+S K D L+ LL+ + + +C CI+
Sbjct: 1482 AQKTTEIKINSSWIVSPLVKVDPGILLKSNLLFWRGGFKAQCSDCIQ 1528
>gb|ADE61677.1| polymerase protein [Northern cereal mosaic cytorhabdovirus]
Length = 2058
Score = 75.9 bits (185), Expect = 8e-11
Identities = 77/287 (26%), Positives = 123/287 (42%), Gaps = 6/287 (2%)
Frame = +3
Query: 3 NMYLSNRMRETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDS 182
N LS+ R+T V R C CI+P+DE DLP+ + IP+ DN YL+ +
Sbjct: 1258 NRLLSSEPRKTVRVYR------TCPHCIKPVDEPKEDLPTPLTEEDIPSRPDNPYLYVEQ 1311
Query: 183 SKIRILEQISPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVT 362
KI ++ + + + + + Y+L P R +L ++ R+ I+
Sbjct: 1312 EKIALVHK-RELDNYESLPIIHRSYLLTYPHIGRRLLTEILATRVATSIL---YNSQEAE 1367
Query: 363 VGLTSVKSYERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFS----YSDEELDRV 530
G+T + RT+F KL +T + I W + S P S S L +
Sbjct: 1368 SGMTDIAGLSRTIFLKLDIYTTFLTAIKMI-----WIGISSTPRVMSGEVFPSWSFLKKS 1422
Query: 531 MSNIISSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSM 710
+ I + SF LA FY WEET +L S V P + P + S + K SL+ +
Sbjct: 1423 IIRRIWESPPSSFSILAGFYLWEETVREL-SDLSWAVMPLSYPATPTSIGIAAKNSLIRL 1481
Query: 711 IRRRFTSGIRRHSIISDDEKND--TLIYKFLLYDQFVRQNRCRACIR 845
++ I I+S K D L+ LL+ + + +C CI+
Sbjct: 1482 AQKTMEIKINSSWIVSPLVKVDPGILLKSNLLFWRGGFKAQCSDCIQ 1528
>gb|ATN96443.1| L protein [Maize yellow striate virus]
Length = 2056
Score = 72.4 bits (176), Expect = 1e-09
Identities = 94/429 (21%), Positives = 181/429 (42%), Gaps = 9/429 (2%)
Frame = +3
Query: 30 ETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQI 209
E R++ R+ + C +CI P+DE D+ + + IP+ DN YL+ KI ++ +
Sbjct: 1263 EPRKILRYY---RTCKDCITPVDEPSEDIRESLSEQEIPSRPDNPYLYVKKEKIALIHK- 1318
Query: 210 SPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTSVKSY 389
+ + + N+ +++ P R L V+ R I+ D G+ +
Sbjct: 1319 RDLDNYESISVVNKSHLIQYPYIGRKFLTEVLAVRAASSILYQSSNDES---GVFDISGV 1375
Query: 390 ERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNIISSADSHSF 569
RT+F KL R L+T+ + A+ + + E + S E + + + A + +F
Sbjct: 1376 SRTIFLKLDIRVFLLTITKMLWIGASASARVASGEIYP-SWEFMKGSLIRRVWEAPASAF 1434
Query: 570 LGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRFTSGIRRHS 749
L+ Y WEE ++ +P V P T P + S C + K SL+ + R + +
Sbjct: 1435 SILSGLYLWEENINEMV-LYPWAVMPLTYPATPNSVCIAAKNSLIGFMSRLDSIVLSSSW 1493
Query: 750 IISDDEKND--TLIYKFLLYDQFVRQNRCRACI------REVATLDTHDLIRSFRLGMCV 905
++S K D L+ LL+ + ++ C +C+ R ++ D ++ R C
Sbjct: 1494 LVSPLIKVDPGVLLKSNLLFYKGKIKSECNSCVLVGMSCRVKSSSDWSEISRI----KCQ 1549
Query: 906 YGHRLSDNLTTYPWIRSFV-TVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSD 1082
GH + L + IR V +E L + + V K+ LP + S + +S+
Sbjct: 1550 AGHSVF-TLKGWRMIRKVVLDIETLADHVPTATRRV-KERLPRGFPLSLKSGITYELTSN 1607
Query: 1083 RMIRRMQRTQYRIPKTRDSDPFCFKPGHPNIFHLLTIMTMPTSTVYKIGDVMCDVRPLIR 1262
Y++P + F +P + + ++PT +Y++ + + +V +
Sbjct: 1608 MNFPGSSNVSYQMP----GEEFLLRPKYD--YSDNYEYSLPTRALYRVYEGISEVTDFLN 1661
Query: 1263 GRDCLCIGD 1289
L +GD
Sbjct: 1662 YGSVLVMGD 1670
>gb|ATN96453.1| polymerase protein [Maize yellow striate virus]
Length = 2056
Score = 72.4 bits (176), Expect = 1e-09
Identities = 94/429 (21%), Positives = 181/429 (42%), Gaps = 9/429 (2%)
Frame = +3
Query: 30 ETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQI 209
E R++ R+ + C +CI P+DE D+ + + IP+ DN YL+ KI ++ +
Sbjct: 1263 EPRKILRYY---RTCKDCITPVDEPSEDIRESLSEQEIPSRPDNPYLYVKKEKIALIHK- 1318
Query: 210 SPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTSVKSY 389
+ + + N+ +++ P R L V+ R I+ D G+ +
Sbjct: 1319 RDLDNYESISVVNKSHLIQYPYIGRKFLTEVLAVRAASSILYQSSNDES---GVFDISGV 1375
Query: 390 ERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNIISSADSHSF 569
RT+F KL R L+T+ + A+ + + E + S E + + + A + +F
Sbjct: 1376 SRTIFLKLDIRVFLLTITKMLWIGASASARVASGEIYP-SWEFMKGSLIRRVWEAPASAF 1434
Query: 570 LGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRFTSGIRRHS 749
L+ Y WEE ++ +P V P T P + S C + K SL+ + R + +
Sbjct: 1435 SILSGLYLWEENINEMV-LYPWAVMPLTYPATPNSVCIAAKNSLIGFMSRLDSIVLSSSW 1493
Query: 750 IISDDEKND--TLIYKFLLYDQFVRQNRCRACI------REVATLDTHDLIRSFRLGMCV 905
++S K D L+ LL+ + ++ C +C+ R ++ D ++ R C
Sbjct: 1494 LVSPLIKVDPGVLLKSNLLFYKGKIKSECNSCVLVGMSCRVKSSSDWSEISRI----KCQ 1549
Query: 906 YGHRLSDNLTTYPWIRSFV-TVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSD 1082
GH + L + IR V +E L + + V K+ LP + S + +S+
Sbjct: 1550 AGHSVF-TLKGWRMIRKVVLDIETLADHVPTATRRV-KERLPRGFPLSLKSGITYELTSN 1607
Query: 1083 RMIRRMQRTQYRIPKTRDSDPFCFKPGHPNIFHLLTIMTMPTSTVYKIGDVMCDVRPLIR 1262
Y++P + F +P + + ++PT +Y++ + + +V +
Sbjct: 1608 MNFPGSSNVSYQMP----GEEFLLRPKYD--YSDNYEYSLPTRALYRVYEGISEVTDFLN 1661
Query: 1263 GRDCLCIGD 1289
L +GD
Sbjct: 1662 YGSVLVMGD 1670
>gb|ACT21686.1| polymerase [Barley yellow striate mosaic cytorhabdovirus]
Length = 2056
Score = 66.6 bits (161), Expect = 7e-08
Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 10/281 (3%)
Frame = +3
Query: 30 ETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQI 209
E R++ RF + C +CI P+DE D+ + K IP+ DN YLF KI ++ +
Sbjct: 1263 EPRKILRFY---RTCPDCITPVDEPKEDIAEVLSDKEIPSRPDNPYLFVKKEKIALIHK- 1318
Query: 210 SPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIV-KGKITDTHVTVGLTSVKS 386
+ + + ++ +++ P R L V+ R I+ + + D+ G+ +
Sbjct: 1319 RELDNYESITVIHKPFIIKYPHVGRRFLTEVLSVRTANAILYQTSLEDS----GVLDISG 1374
Query: 387 YERTMFFKLSPRHMLITV-------MSEIRKVAAWTVMKSHPERFSYSDEELDRVMSNII 545
RT+F KL + +T+ S +VA+ + S ++Y + L R +
Sbjct: 1375 VSRTIFLKLDIQAFFLTIAKLIWIGASSTARVASGDIYPS----WAYMKDSLIR----RV 1426
Query: 546 SSADSHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRF 725
A S +F L+ Y WEE ++ + V P T P + S C + K SL+ + R
Sbjct: 1427 WEAPSSAFTILSGLYLWEENINEMV-RYSWAVMPLTYPATPSSVCIAAKNSLIRFMGRVE 1485
Query: 726 TSGIRRHSIISDDEKND--TLIYKFLLYDQFVRQNRCRACI 842
I ++S K D L+ LL+ + ++ C +C+
Sbjct: 1486 NVSIESSWLVSPLIKVDPGILLKSNLLFYRGKIRSECNSCV 1526
>ref|YP_009362280.1| RNA-dependent RNA polymerase [Colocasia bobone disease-associated
virus]
gb|ALU34427.1| RNA-dependent RNA polymerase [Colocasia bobone disease-associated
virus]
Length = 2068
Score = 66.6 bits (161), Expect = 7e-08
Identities = 97/425 (22%), Positives = 179/425 (42%), Gaps = 15/425 (3%)
Frame = +3
Query: 60 FKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQISPITSLTDRV 239
F + C CI P+DE DL S + P+ N YLF +I ++ S +L + +
Sbjct: 1275 FYRGCPHCITPVDEPNNDLESPVLPEDFPSRPGNPYLFIGKEEIELIH--SQTANLFEEI 1332
Query: 240 -LTNEEYVLIPPARKRVMLERVICDRIIKDIVKGKITDTHVTVGLTSVKSYERTMFFKLS 416
++ ++ P R +L V+ + + I++ + GL+ + RT+F KLS
Sbjct: 1333 KRLGKDDMIKSPGLSRTLLTEVVASKSAQAILRN--DSSRQDAGLSDIGGMSRTVFLKLS 1390
Query: 417 PRHMLITVMSEIRKVAAWTVMKSHP---ERFSY-SDEELDRVMSNIISSADSHSFLGLAM 584
R++ +T + I W + S E +Y S + R + + SF L
Sbjct: 1391 VRNVFVTTLKFI-----WIGLSSGEAVVESGAYPSWNYMKRSLIRKLWETPLASFTLLTG 1445
Query: 585 FYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRFTSGIRRHSIISD- 761
FY WEE ++ S P +V P + P++ S + K +L+ + R + +I+
Sbjct: 1446 FYIWEEMINEM-KSIPWVVMPLSYPLTPSSLGVAAKNTLIRLAERVQRFPAQGSMLITPL 1504
Query: 762 DEKNDTLIYKF-LLYDQFVRQNRCRACIREVAT--LDTHDLIRSFRLGMCVYGHRLSDNL 932
N ++ K LL+++ ++ C CI T L+ +S + C GH +
Sbjct: 1505 ISMNFGMVLKHNLLFNRGEFRSSCPDCIVSGMTSKLNQRADWKSLKAIRCDAGHHVF--- 1561
Query: 933 TTYPWIRSFVTVERLRKDCSSFDQSVNKKDLPFTIKGTEMSFLVMLASSDRMIRRMQRTQ 1112
+ S+ ++R+ D + V +P T K + LV++ + + T
Sbjct: 1562 ----LLNSWRRLQRVMLDLETLGDLV--PSIPRTSK--RKTNLVIVPPVVNQVNEIFSTS 1613
Query: 1113 YRIPKTRDSDPFCFKPGH-----PN-IFHLLTIMTMPTSTVYKIGDVMCDVRPLIRGRDC 1274
PK+ P PG PN I +L ++PT ++Y++ + + + +
Sbjct: 1614 --TPKSYADTPSRL-PGDEVINAPNMIVNLELKFSIPTKSLYRVHEALSHLDDCMEYGSI 1670
Query: 1275 LCIGD 1289
LC+GD
Sbjct: 1671 LCLGD 1675
>ref|YP_009177231.1| L protein [Barley yellow striate mosaic cytorhabdovirus]
gb|AJP67524.1| L protein [Barley yellow striate mosaic cytorhabdovirus]
Length = 2056
Score = 66.2 bits (160), Expect = 9e-08
Identities = 68/277 (24%), Positives = 123/277 (44%), Gaps = 6/277 (2%)
Frame = +3
Query: 30 ETREVCRFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKIRILEQI 209
E R++ RF + C +CI P+DE D+ + K IP+ DN YLF KI ++ +
Sbjct: 1263 EPRKILRFY---RTCPDCITPVDEPKEDIAEILSDKEIPSRPDNPYLFVKKEKIALIHK- 1318
Query: 210 SPITSLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDIV-KGKITDTHVTVGLTSVKS 386
+ + + ++ +++ P R L V+ R I+ + + D+ G+ +
Sbjct: 1319 RELDNYESITVIHKPFIIKYPHVGRRFLTEVLSVRTANAILYQTSLEDS----GVLDISG 1374
Query: 387 YERTMFFKLSPRHMLITVMSEIRKVAAWTVMKSHPE---RFSYSDEELDRVMSNIISSAD 557
RT+F KL + +T+ I A+ T + + ++Y + L R + A
Sbjct: 1375 VSRTIFLKLDIQAFFLTIAKMIWIGASSTARVASGDIYPSWAYMKDSLIR----RVWEAP 1430
Query: 558 SHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRFTSGI 737
S +F L+ Y WEE ++ + V P T P + S C + K SL+ + R I
Sbjct: 1431 SSAFTILSGLYLWEENINEMV-RYSWAVMPLTYPATPSSVCIAAKNSLIRFMGRVENVSI 1489
Query: 738 RRHSIISDDEKND--TLIYKFLLYDQFVRQNRCRACI 842
++S K D L+ LL+ + ++ C +C+
Sbjct: 1490 ASSWLVSPLIKVDPGILLKSNLLFYRGKIRSECNSCV 1526
>gb|APR74654.1| L protein [Rice stripe mosaic virus]
Length = 2066
Score = 60.5 bits (145), Expect = 6e-06
Identities = 78/307 (25%), Positives = 130/307 (42%), Gaps = 16/307 (5%)
Frame = +3
Query: 48 RFKHFKQCCYECIQPIDEDFVDLPSDKAVKFIPAFRDNEYLFTDSSKI--RILEQISPIT 221
R F + C +CI PID+ DLP ++ IP N YL+ KI + +++ I
Sbjct: 1278 RMTRFFRSCPDCIVPIDDTLEDLPEVPSLDLIPERTTNPYLYLKKEKIELNVRHRLAVIN 1337
Query: 222 SLTDRVLTNEEYVLIPPARKRVMLERVICDRIIKDI---VKGKITDTHVTVGLTSVKSYE 392
+ RV+ +E + P LE V+ R + I KGK +++ +
Sbjct: 1338 EI--RVIARDE-IEETPLLANNTLEDVMSLRAAQRIFYTAKGKEAQ-------WDLQTAD 1387
Query: 393 RTMFFKLSPRHMLITVMSEIRKVAAWT-VMKSHPER--FSYSDEELD--RVMSNIISSAD 557
R + KL +S IRK+ VM+S + Y +L R+M + S D
Sbjct: 1388 REGYLKLD-------FVSVIRKIIGHLFVMESETLKAGSDYPTFQLQQRRIMRRVRQS-D 1439
Query: 558 SHSFLGLAMFYCWEETSFKLCSSFPEIVAPSTNPVSVQSACDSIKCSLLSMIRRRFT--- 728
+ +F+ L F+CW+E+ ++ V P+T P++ +S + K SL+ + T
Sbjct: 1440 TSNFVHLGGFFCWQESIARI-QKLKWSVMPATFPITAESVSLAAKMSLIGAMTSGLTPKR 1498
Query: 729 -SGIRRHSIISDDEKNDTLIYKFLLYDQFVRQNRCRACIREVATLDTHDLIRSFRL--GM 899
G+ ++I D + K ++ V Q+RC C T D I S +
Sbjct: 1499 CDGVLAENLIPDVTRQ----AKNIICLDKVFQSRCDYCYTAAMTNRWSDSINSDSIFNMR 1554
Query: 900 CVYGHRL 920
C GH +
Sbjct: 1555 CERGHTI 1561