BLASTX nr result

ID: Chrysanthemum22_contig00047938 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00047938
         (443 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PLY68901.1| hypothetical protein LSAT_2X113960 [Lactuca sativa]    140   3e-39
gb|PLY68931.1| hypothetical protein LSAT_2X113920 [Lactuca sativa]    111   9e-28
gb|PLY68888.1| hypothetical protein LSAT_2X113940 [Lactuca sativa]     61   3e-09

>gb|PLY68901.1| hypothetical protein LSAT_2X113960 [Lactuca sativa]
          Length = 217

 Score =  140 bits (354), Expect = 3e-39
 Identities = 71/119 (59%), Positives = 87/119 (73%), Gaps = 6/119 (5%)
 Frame = -2

Query: 442 PLFRSNSDSFRYMGLKTTSRPSTLRSKSLPKASATSFLCKSRFMVFMFGSRSSKFPTKVD 263
           PLFRS+SDSFR+M LKT S+PST RSKSLP     S  CKS++ VFMFG  S KFPTK+D
Sbjct: 99  PLFRSSSDSFRFMPLKTASKPSTPRSKSLPNRLPKSSSCKSKWQVFMFGFGSGKFPTKMD 158

Query: 262 MSDIKSRKLRQQCTTAGDNEVNG------GRKSGNKGWWRVVDVLGCVGGYERDTVGVI 104
           MSDIK+R+ R++ T      V+       GR+SG KGWWR+VDVLGC GGY++DT+ VI
Sbjct: 159 MSDIKTRQFRRKSTVTVSQWVDDGKDDCVGRRSGKKGWWRLVDVLGCSGGYDKDTMVVI 217


>gb|PLY68931.1| hypothetical protein LSAT_2X113920 [Lactuca sativa]
          Length = 204

 Score =  111 bits (277), Expect = 9e-28
 Identities = 60/118 (50%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
 Frame = -2

Query: 442 PLFRSNSDSFRYMGLKTTSRPSTLRSKSLPKASATSFLCKS--RFMVFMFGSRSSKFPTK 269
           P+FRS+S SF+YM  KT SRPST RS S+     +    KS  R+ VFMFG  S KFPTK
Sbjct: 84  PIFRSSSSSFKYMRRKTVSRPSTSRSMSVTVMERSRMASKSNSRWQVFMFGLGSGKFPTK 143

Query: 268 VDMSDIKSRKLRQQCTTAGD------NEVNGGRKSGNKGWWRVVDVLGCVGGYERDTV 113
           +D+SDIKSR+LR++ T   D      +     ++SG K WWR VD+LGC GG+ RD V
Sbjct: 144 MDLSDIKSRQLRRRSTPEMDLGDVIKSRQPHDQRSGKKAWWRFVDILGCGGGFVRDAV 201


>gb|PLY68888.1| hypothetical protein LSAT_2X113940 [Lactuca sativa]
          Length = 120

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = -2

Query: 325 KSRFMVFMFGSRSSKFPTKVDMSDIKSRKLRQQCTTAGDNEVNGGRKSGNKGWWRVVDVL 146
           K+++ V  FG  S++FP K+ +SDIKSR+     T  G  + +  RK   K WWR++DV 
Sbjct: 38  KTKWQVVAFGFGSTRFPRKMKLSDIKSRQQTSTTTAEGGEDGSDRRK---KRWWRLIDVF 94

Query: 145 GCVGGYERDTV 113
            C GGY+ D V
Sbjct: 95  RCGGGYDGDMV 105


Top