BLASTX nr result
ID: Chrysanthemum22_contig00047143
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00047143
(859 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_017225359.1| PREDICTED: probable mediator of RNA polymera... 77 4e-14
ref|XP_020704005.1| mediator of RNA polymerase II transcription ... 64 4e-13
ref|XP_020698861.1| mediator of RNA polymerase II transcription ... 64 5e-13
ref|XP_022736684.1| probable mediator of RNA polymerase II trans... 63 7e-13
ref|XP_020580686.1| mediator of RNA polymerase II transcription ... 61 1e-12
ref|XP_021285699.1| probable mediator of RNA polymerase II trans... 62 1e-12
ref|XP_006437602.1| probable mediator of RNA polymerase II trans... 62 1e-12
ref|XP_011624806.1| mediator of RNA polymerase II transcription ... 63 1e-12
ref|XP_022764563.1| mediator of RNA polymerase II transcription ... 62 1e-12
gb|ERM94968.1| hypothetical protein AMTR_s00009p00218020 [Ambore... 63 1e-12
ref|XP_017229282.1| PREDICTED: uncharacterized protein LOC108204... 79 1e-12
ref|XP_017229281.1| PREDICTED: uncharacterized protein LOC108204... 79 1e-12
ref|XP_017633769.1| PREDICTED: probable mediator of RNA polymera... 62 1e-12
ref|XP_016702667.1| PREDICTED: probable mediator of RNA polymera... 62 1e-12
ref|XP_012474550.1| PREDICTED: probable mediator of RNA polymera... 62 1e-12
gb|PPR96855.1| hypothetical protein GOBAR_AA23811 [Gossypium bar... 62 2e-12
gb|PPD72919.1| hypothetical protein GOBAR_DD30188 [Gossypium bar... 62 2e-12
ref|XP_017973023.1| PREDICTED: probable mediator of RNA polymera... 61 2e-12
ref|XP_016741759.1| PREDICTED: mediator of RNA polymerase II tra... 62 2e-12
ref|XP_012484121.1| PREDICTED: mediator of RNA polymerase II tra... 62 2e-12
>ref|XP_017225359.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 36b [Daucus carota subsp. sativus]
Length = 117
Score = 77.4 bits (189), Expect = 4e-14
Identities = 35/60 (58%), Positives = 48/60 (80%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVFV 452
V+YRV NP+MS LA +I G+ NI+V+PGS +LYL GDD C T+S++SD+VG DG+V+V
Sbjct: 9 VEYRVWNPLMSNLANAIMCGVTNIWVKPGSRILYL-GDDVCQITLSHLSDLVGLDGLVYV 67
>ref|XP_020704005.1| mediator of RNA polymerase II transcription subunit 36a-like
[Dendrobium catenatum]
gb|PKU69265.1| putative mediator of RNA polymerase II transcription subunit 36b
[Dendrobium catenatum]
Length = 304
Score = 64.3 bits (155), Expect(2) = 4e-13
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 156 DGVFVKGRMRPGTTETATYYTKKLQDFVHQYELVTIQDN----VQYRVMNPIMSKLAASI 323
DGVFV G + + V+ + V++Q+ V+YRV NP SKLAA+I
Sbjct: 74 DGVFVA----KGKEDALCTKNMVSGESVYGEKRVSVQNEDGTKVEYRVWNPFRSKLAAAI 129
Query: 324 HAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
G+ NI++ PGS VLYL T+S++SDIVG GMV+
Sbjct: 130 LGGVDNIWIAPGSRVLYLGA--ASGTTVSHVSDIVGPTGMVY 169
Score = 39.3 bits (90), Expect(2) = 4e-13
Identities = 39/130 (30%), Positives = 57/130 (43%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 177 SGRDLVNMAKKRTNVIPII------EDARHPTKYRM--LVGMVDVIFSDVAQPDQARILG 228
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + N FV +KAN + VP ++F E +LQ +F + F VT
Sbjct: 229 LNASFFLKNGGHFVISIKANCI--------DSTVPAEAVFAQEVKKLQADQF-KPFEQVT 279
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 280 LEPFERDHAC 289
>ref|XP_020698861.1| mediator of RNA polymerase II transcription subunit 36a-like
[Dendrobium catenatum]
gb|PKU74949.1| putative mediator of RNA polymerase II transcription subunit 36b
[Dendrobium catenatum]
Length = 304
Score = 63.9 bits (154), Expect(2) = 5e-13
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 156 DGVFVKGRMRPGTTETATYYTKKLQDFVHQYELVTIQDN----VQYRVMNPIMSKLAASI 323
DGVFV G + + V+ + +++Q+ V+YRV NP SKLAA+I
Sbjct: 74 DGVFVA----KGKEDALCTKNMVSGESVYGEKRISVQNEDGTKVEYRVWNPFRSKLAAAI 129
Query: 324 HAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
G+ NI++ PGS VLYL T+S++SDIVG GMV+
Sbjct: 130 LGGVDNIWIAPGSRVLYLGA--ASGTTVSHVSDIVGPTGMVY 169
Score = 39.3 bits (90), Expect(2) = 5e-13
Identities = 39/130 (30%), Positives = 57/130 (43%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 177 SGRDLVNMAKKRTNVIPII------EDARHPTKYRM--LVGMVDVIFSDVAQPDQARILG 228
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + N FV +KAN + VP ++F E +LQ +F + F VT
Sbjct: 229 LNASFFLKNGGHFVISIKANCI--------DSTVPAEAVFAQEVKKLQADQF-KPFEQVT 279
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 280 LEPFERDHAC 289
>ref|XP_022736684.1| probable mediator of RNA polymerase II transcription subunit 36b
[Durio zibethinus]
Length = 300
Score = 62.8 bits (151), Expect(2) = 7e-13
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SDIVG +G+V+
Sbjct: 109 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDIVGTNGVVY 165
Score = 40.0 bits (92), Expect(2) = 7e-13
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ SK + L +DV+F DV DQ L
Sbjct: 173 SGRDLVNMAKKRTNVIPII------EDARHPSKYRM--LVGMVDVIFSDVAQPDQARILA 224
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F +E +LQ+ +F + F VT
Sbjct: 225 LNASYFLKTGGHFVISIKANCI--------DSTVPAEAVFQNEVKKLQQEQF-KPFEQVT 275
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 276 LEPFERDHAC 285
>ref|XP_020580686.1| mediator of RNA polymerase II transcription subunit 36a-like
[Phalaenopsis equestris]
Length = 312
Score = 60.8 bits (146), Expect(2) = 1e-12
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
++YRV NP SKLAA+I G+ NI++ PGS VLYL T+S++SDIVG G+V+
Sbjct: 120 MEYRVWNPFRSKLAAAILGGVDNIWIAPGSRVLYLGA--ASGTTVSHVSDIVGPTGVVY 176
Score = 41.2 bits (95), Expect(2) = 1e-12
Identities = 38/130 (29%), Positives = 56/130 (43%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV ++ +A H + L +DV+F DV DQ L
Sbjct: 184 SGRDLVNMAKKRTNV-IPIIEDARHPTRYRM-------LVGMVDVIFSDVAQPDQARILA 235
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + N+ FV +KAN + VP ++F E +LQ +F + F VT
Sbjct: 236 LNASFFLKNEGHFVISIKANCI--------DSTVPAEAVFAQEVKKLQADQF-KPFEQVT 286
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 287 LEPFERDHAC 296
>ref|XP_021285699.1| probable mediator of RNA polymerase II transcription subunit 36b
[Herrania umbratica]
Length = 307
Score = 61.6 bits (148), Expect(2) = 1e-12
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG G+V+
Sbjct: 116 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPTGVVY 172
Score = 40.4 bits (93), Expect(2) = 1e-12
Identities = 40/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ SK + L +DV+F DV DQ L
Sbjct: 180 SGRDLVNMAKKRTNVIPII------EDARHPSKYRM--LVGMVDVIFSDVAQPDQARILA 231
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 232 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 282
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 283 LEPFERDHAC 292
>ref|XP_006437602.1| probable mediator of RNA polymerase II transcription subunit 36b
[Citrus clementina]
gb|ESR50842.1| hypothetical protein CICLE_v10032221mg [Citrus clementina]
Length = 305
Score = 62.4 bits (150), Expect(2) = 1e-12
Identities = 30/75 (40%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Frame = +3
Query: 237 VHQYELVTIQDN----VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFT 404
V+ + +++Q+ V+YR+ NP SKLAA++ G+ NI+++PG+ VLYL T
Sbjct: 100 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGA--ASGTT 157
Query: 405 ISYISDIVGKDGMVF 449
+S++SDIVG +G+V+
Sbjct: 158 VSHVSDIVGPNGVVY 172
Score = 39.7 bits (91), Expect(2) = 1e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 180 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 231
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 232 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQDQF-KPFEQVT 282
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 283 LEPFERDHAC 292
>ref|XP_011624806.1| mediator of RNA polymerase II transcription subunit 36a [Amborella
trichopoda]
Length = 303
Score = 62.8 bits (151), Expect(2) = 1e-12
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Frame = +3
Query: 156 DGVFVKGRMRPGTTETATYYTKKLQDFVHQYELVTIQDN----VQYRVMNPIMSKLAASI 323
DGVF+ G + + V+ + + +Q+ V+YRV NP SKLAA+I
Sbjct: 71 DGVFIA----KGKEDALVTKNMVTGESVYGEKRIAVQNEDGTKVEYRVWNPFRSKLAAAI 126
Query: 324 HAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
+G+ NI++ PGS VLYL T+S++SD+VG +G+V+
Sbjct: 127 LSGVDNIWISPGSRVLYLGA--ASGTTVSHVSDLVGPNGIVY 166
Score = 39.3 bits (90), Expect(2) = 1e-12
Identities = 38/130 (29%), Positives = 59/130 (45%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ S+ + L +DV+F DV DQ L
Sbjct: 174 SGRDLVNMAKKRTNVIPII------EDARHPSRYRM--LVGMVDVIFSDVAQPDQARILG 225
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + N+ FV +KAN + VP ++F+ E +L+E +F + VT
Sbjct: 226 LNASYFLKNEGYFVISIKANCI--------DSTVPAEAVFVQEVRKLKEEKF-KPMEQVT 276
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 277 LEPFERDHAC 286
>ref|XP_022764563.1| mediator of RNA polymerase II transcription subunit 36a-like [Durio
zibethinus]
Length = 302
Score = 62.4 bits (150), Expect(2) = 1e-12
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 156 DGVFVKGRMRPGTTETATYYTKKLQDFVHQYELVTIQDN----VQYRVMNPIMSKLAASI 323
DGVFV G + + V+ + + +Q+ V+YRV NP SKLAA+I
Sbjct: 72 DGVFVA----KGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKLAAAI 127
Query: 324 HAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
G+ NI+++PG+ VLYL T+S++SD+VG G+V+
Sbjct: 128 LGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPTGVVY 167
Score = 39.7 bits (91), Expect(2) = 1e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ SK + L +DV+F DV DQ L
Sbjct: 175 SGRDLVNMAKKRTNVIPII------EDARHPSKYRM--LVGMVDVIFSDVAQPDQARILA 226
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F +E +LQ+ +F + F VT
Sbjct: 227 LNASFFLKAGGHFVISIKANCI--------DSTVPAEAVFQNEVKKLQQDQF-KPFEQVT 277
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 278 LEPFERDHAC 287
>gb|ERM94968.1| hypothetical protein AMTR_s00009p00218020 [Amborella trichopoda]
Length = 300
Score = 62.8 bits (151), Expect(2) = 1e-12
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Frame = +3
Query: 156 DGVFVKGRMRPGTTETATYYTKKLQDFVHQYELVTIQDN----VQYRVMNPIMSKLAASI 323
DGVF+ G + + V+ + + +Q+ V+YRV NP SKLAA+I
Sbjct: 68 DGVFIA----KGKEDALVTKNMVTGESVYGEKRIAVQNEDGTKVEYRVWNPFRSKLAAAI 123
Query: 324 HAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
+G+ NI++ PGS VLYL T+S++SD+VG +G+V+
Sbjct: 124 LSGVDNIWISPGSRVLYLGA--ASGTTVSHVSDLVGPNGIVY 163
Score = 39.3 bits (90), Expect(2) = 1e-12
Identities = 38/130 (29%), Positives = 59/130 (45%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ S+ + L +DV+F DV DQ L
Sbjct: 171 SGRDLVNMAKKRTNVIPII------EDARHPSRYRM--LVGMVDVIFSDVAQPDQARILG 222
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + N+ FV +KAN + VP ++F+ E +L+E +F + VT
Sbjct: 223 LNASYFLKNEGYFVISIKANCI--------DSTVPAEAVFVQEVRKLKEEKF-KPMEQVT 273
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 274 LEPFERDHAC 283
>ref|XP_017229282.1| PREDICTED: uncharacterized protein LOC108204391 isoform X2 [Daucus
carota subsp. sativus]
Length = 515
Score = 78.6 bits (192), Expect = 1e-12
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 15/123 (12%)
Frame = +3
Query: 129 YANNETTLFDGVFVKGRMRPGTTETATYYTKKLQDFV-----------HQYELVTIQDN- 272
YA + T + +G + P E + K +DF+ + EL+ +Q+
Sbjct: 274 YAQSSTRISSSSVQRGLVVPYRFE-GVFIAKGKEDFICTRNLVPGEALYGEELIFVQNEG 332
Query: 273 ---VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGM 443
V+YRV NP+ S LA +I G+ NI+V+PGS +LYL GDD C T+S++SD+VG DG+
Sbjct: 333 GTEVEYRVWNPLRSNLANAIMCGVTNIWVKPGSRILYL-GDDVCQITLSHLSDLVGLDGL 391
Query: 444 VFV 452
V+V
Sbjct: 392 VYV 394
>ref|XP_017229281.1| PREDICTED: uncharacterized protein LOC108204391 isoform X1 [Daucus
carota subsp. sativus]
Length = 521
Score = 78.6 bits (192), Expect = 1e-12
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 15/123 (12%)
Frame = +3
Query: 129 YANNETTLFDGVFVKGRMRPGTTETATYYTKKLQDFV-----------HQYELVTIQDN- 272
YA + T + +G + P E + K +DF+ + EL+ +Q+
Sbjct: 280 YAQSSTRISSSSVQRGLVVPYRFE-GVFIAKGKEDFICTRNLVPGEALYGEELIFVQNEG 338
Query: 273 ---VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGM 443
V+YRV NP+ S LA +I G+ NI+V+PGS +LYL GDD C T+S++SD+VG DG+
Sbjct: 339 GTEVEYRVWNPLRSNLANAIMCGVTNIWVKPGSRILYL-GDDVCQITLSHLSDLVGLDGL 397
Query: 444 VFV 452
V+V
Sbjct: 398 VYV 400
>ref|XP_017633769.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 36b isoform X1 [Gossypium arboreum]
Length = 306
Score = 62.4 bits (150), Expect(2) = 1e-12
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 114 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 170
Score = 39.3 bits (90), Expect(2) = 1e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 178 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 229
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 230 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 280
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 281 LEPFERDHAC 290
>ref|XP_016702667.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 36b isoform X1 [Gossypium hirsutum]
Length = 305
Score = 62.4 bits (150), Expect(2) = 1e-12
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 113 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 169
Score = 39.3 bits (90), Expect(2) = 1e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 177 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 228
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 229 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 279
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 280 LEPFERDHAC 289
>ref|XP_012474550.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 36b [Gossypium raimondii]
gb|KJB23841.1| hypothetical protein B456_004G117600 [Gossypium raimondii]
Length = 303
Score = 62.4 bits (150), Expect(2) = 1e-12
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 111 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 167
Score = 39.3 bits (90), Expect(2) = 1e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 175 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 226
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 227 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 277
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 278 LEPFERDHAC 287
>gb|PPR96855.1| hypothetical protein GOBAR_AA23811 [Gossypium barbadense]
Length = 289
Score = 62.4 bits (150), Expect(2) = 2e-12
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 97 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 153
Score = 39.3 bits (90), Expect(2) = 2e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 161 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 212
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 213 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 263
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 264 LEPFERDHAC 273
>gb|PPD72919.1| hypothetical protein GOBAR_DD30188 [Gossypium barbadense]
Length = 246
Score = 62.4 bits (150), Expect(2) = 2e-12
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 54 VEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 110
Score = 39.3 bits (90), Expect(2) = 2e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 118 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 169
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 170 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 220
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 221 LEPFERDHAC 230
>ref|XP_017973023.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 36b [Theobroma cacao]
Length = 308
Score = 60.8 bits (146), Expect(2) = 2e-12
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YR+ NP SKLAA+I G+ NI+++PG+ VLYL T+S++SD+VG G+V+
Sbjct: 117 VEYRIWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPAGVVY 173
Score = 40.4 bits (93), Expect(2) = 2e-12
Identities = 40/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ SK + L +DV+F DV DQ L
Sbjct: 181 SGRDLVNMAKKRTNVIPII------EDARHPSKYRM--LVGMVDVIFSDVAQPDQARILA 232
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 233 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 283
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 284 LEPFERDHAC 293
>ref|XP_016741759.1| PREDICTED: mediator of RNA polymerase II transcription subunit
36a-like [Gossypium hirsutum]
Length = 303
Score = 62.0 bits (149), Expect(2) = 2e-12
Identities = 28/59 (47%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA++ G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 112 VEYRVWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 168
Score = 39.3 bits (90), Expect(2) = 2e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 176 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 227
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 228 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 278
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 279 LEPFERDHAC 288
>ref|XP_012484121.1| PREDICTED: mediator of RNA polymerase II transcription subunit
36a-like [Gossypium raimondii]
gb|KJB34148.1| hypothetical protein B456_006G050000 [Gossypium raimondii]
Length = 303
Score = 62.0 bits (149), Expect(2) = 2e-12
Identities = 28/59 (47%), Positives = 43/59 (72%)
Frame = +3
Query: 273 VQYRVMNPIMSKLAASIHAGIKNIYVRPGSNVLYLPGDDTCAFTISYISDIVGKDGMVF 449
V+YRV NP SKLAA++ G+ NI+++PG+ VLYL T+S++SD+VG +G+V+
Sbjct: 112 VEYRVWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGA--ASGTTVSHVSDVVGPNGVVY 168
Score = 39.3 bits (90), Expect(2) = 2e-12
Identities = 39/130 (30%), Positives = 58/130 (44%)
Frame = +1
Query: 469 SFRVFINLLNTRSNVQFIVVGNATHQDSAAVSKNNIDSLGKKIDVLFCDVGYVDQEDCLV 648
S R +N+ R+NV I+ +D+ +K + L +DV+F DV DQ L
Sbjct: 176 SGRDLVNMAKKRTNVIPII------EDARHPAKYRM--LVGMVDVIFSDVAQPDQARILA 227
Query: 649 AFASVIMTNKSSFVAFLKANRFVHVNFAQNQAVVPNISIFLSEQTRLQECRFIQLFNVVT 828
AS + FV +KAN + VP ++F SE +LQ+ +F + F VT
Sbjct: 228 LNASYFLKAGGHFVISIKANCI--------DSTVPAEAVFQSEVKKLQQEQF-KPFEQVT 278
Query: 829 LTSFVPGWCC 858
L F C
Sbjct: 279 LEPFERDHAC 288