BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00044374
         (606 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO53991.1| reverse transcriptase [Corchorus capsularis]            47   8e-06

>gb|OMO53991.1| reverse transcriptase [Corchorus capsularis]
          Length = 1339

 Score = 46.6 bits (109), Expect(2) = 8e-06
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +2

Query: 20   KLHFV-----MTKPSKGRTWPWQFENKNKALLTKWLWIYANENDAKWSLIIRCTYGDQND 184
            KLH V      T  S+G     + E +N ALLTKW+W + NE D+ W  ++   +   ND
Sbjct: 1010 KLHLVDWQTLTTPKSQGGLGISKLEVRNGALLTKWIWRFGNEKDSYWRSVVVARHNWPND 1069

Query: 185  ML*PDISRSKK 217
             + P +  S+K
Sbjct: 1070 CIFPLLETSRK 1080



 Score = 30.8 bits (68), Expect(2) = 8e-06
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 229  VSRNMTDVVNQNNHMNNIIKDRFTMLLG*LDKIRFWSDI*LDNVELKH*IP*VYALL 399
            V +N+   +  +N  ++++   F +L+G   +I FW +  +  V LK   P ++AL+
Sbjct: 1084 VWKNIASPLESSNRFHDVLVSGFGLLIGNGKRISFWREEWIPGVILKQDYPRIFALV 1140