BLASTX nr result

ID: Chrysanthemum22_contig00041989 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00041989
         (358 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PLY84188.1| hypothetical protein LSAT_3X95661 [Lactuca sativa]      44   1e-07

>gb|PLY84188.1| hypothetical protein LSAT_3X95661 [Lactuca sativa]
          Length = 93

 Score = 43.5 bits (101), Expect(2) = 1e-07
 Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +2

Query: 179 NDFDVENGKIEKIQDTG--SLKIVVIMAGDNVPTYMANPVVLN 301
           +D DVE+GK     D    S KIVVIMAGD +PTY+A P  +N
Sbjct: 51  SDQDVESGKAVMFHDEAYSSPKIVVIMAGDEIPTYLATPAGVN 93



 Score = 39.7 bits (91), Expect(2) = 1e-07
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  FWRFDSPLIYLFTGXXXXXXXXXXXXXXXXCSQRNRR 167
           FWRFDSPL+YLF G                CSQR+RR
Sbjct: 10  FWRFDSPLVYLFGGIAAMLALIVVALVILACSQRHRR 46


Top