BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00040269
         (826 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   236   5e-67
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   227   5e-64
gb|ABW74566.1| integrase [Boechera divaricarpa]                       216   4e-60
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   206   1e-56
gb|AIC77183.1| polyprotein [Gossypium barbadense]                     202   3e-55
dbj|GAU44223.1| hypothetical protein TSUD_399870 [Trifolium subt...   201   8e-55
gb|PNX60317.1| retrotransposon-related protein, partial [Trifoli...   188   1e-54
gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]   191   1e-54
gb|OMO99220.1| hypothetical protein CCACVL1_03887 [Corchorus cap...   196   3e-53
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]   194   2e-52
gb|PNX66111.1| copia-type polyprotein, partial [Trifolium pratense]   181   3e-52
gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposo...   192   9e-52
gb|KYP46539.1| Retrovirus-related Pol polyprotein from transposo...   181   5e-51
gb|KYP47011.1| Retrovirus-related Pol polyprotein from transposo...   179   4e-50
gb|KYP66838.1| Retrovirus-related Pol polyprotein from transposo...   181   4e-48
gb|KYP61818.1| Retrovirus-related Pol polyprotein from transposo...   180   1e-47
gb|KYP68287.1| Retrovirus-related Pol polyprotein from transposo...   180   1e-47
gb|KYP31826.1| Retrovirus-related Pol polyprotein from transposo...   180   1e-47
gb|KYP60991.1| Retrovirus-related Pol polyprotein from transposo...   170   3e-45
dbj|GAU30874.1| hypothetical protein TSUD_15600 [Trifolium subte...   171   1e-44

>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  236 bits (601), Expect = 5e-67
 Identities = 131/287 (45%), Positives = 169/287 (58%), Gaps = 12/287 (4%)
 Frame = +1

Query: 1    FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG + Y L  +  R KLD+KS K +FIGYC  SK Y+LY+P+SGKI VSR+VVFDE A  
Sbjct: 779  FGSVAYTLXBSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASX 838

Query: 178  NWENKN-------TTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXX 336
             W           ++++   ++ED+Q  ++   S    HSP                   
Sbjct: 839  TWRVSEDGALVEISSESEMAQSEDQQPSVQIPXSPTPSHSP------------------- 879

Query: 337  XXXXXXXXXXXXXXXQFPNLRRSERGQ----VPRRWFPVEGEDTTTPLALFVGDPVTVEE 504
                             PNL  S   Q     P R F    +   T   LFV DP T EE
Sbjct: 880  ---------------SSPNLSXSSSSQSSEETPPRKFRSLRDIYETTQVLFVADPTTFEE 924

Query: 505  AMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLV 684
            A+E EEW  AMKEE+++IEKN+TWE  +LPE KNVI +KW+F+TKYLADG +QK+KARLV
Sbjct: 925  AVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLV 984

Query: 685  VRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
             +G+ QQ G+DY++TF+PVARFETVR +LA+AA   W +YQFDVKSA
Sbjct: 985  AKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCVYQFDVKSA 1031


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  227 bits (579), Expect = 5e-64
 Identities = 127/275 (46%), Positives = 168/275 (61%)
 Frame = +1

Query: 1    FGCICYVLIKTARHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGWN 180
            FGCI Y L+     KLD+KS K +F+GY   SKAYRLY+P+SGK+ +SR+VVF+E   WN
Sbjct: 673  FGCIAYALVNF-HSKLDEKSTKCIFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWN 731

Query: 181  WENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXXX 360
            + + N     Q+   DE+S ++   S     SP                           
Sbjct: 732  FNSGNMMSNIQLLPTDEESAVDFGNSPNS--SP-----------VSSSVSSPIAPSTTVA 778

Query: 361  XXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVGDPVTVEEAMEIEEWRLAMK 540
                     P LRRS R + P   +     +T+   AL V DP+  EEA+E  EW+ AM 
Sbjct: 779  PDESSVEPIP-LRRSTREKKPNPKYS-NTVNTSCQFALLVSDPICYEEAVEQSEWKNAMI 836

Query: 541  EELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGIDY 720
            EE+ +IE+N TWE  D PEGKNVI LKW+F+TKY ADG +QK+KARLV +G++QQQG+D+
Sbjct: 837  EEIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDF 896

Query: 721  EETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            +ETF+PVARFETVR++LA+AAQ    +YQFDVKSA
Sbjct: 897  DETFSPVARFETVRVVLALAAQLHLPVYQFDVKSA 931


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  216 bits (549), Expect = 4e-60
 Identities = 121/276 (43%), Positives = 157/276 (56%), Gaps = 1/276 (0%)
 Frame = +1

Query: 1    FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG +CY LI    R KLD+KS+K +F+GYC  SK YRLY+P+SGKI  SR+V FDE A W
Sbjct: 509  FGSVCYSLIDAHNRKKLDEKSEKCIFLGYCSQSKGYRLYNPVSGKIVESRNVTFDEEAVW 568

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
             W   +  +  ++   D     EQE +    +S                           
Sbjct: 569  TWREGDNGELVEIFVND-----EQEENPSPANSA-TNTPASSAPSSPGPNNGNGSSDGEG 622

Query: 358  XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVGDPVTVEEAMEIEEWRLAM 537
                    +F +LR     Q                 A F  DPVTV EA   EEWR AM
Sbjct: 623  SSSISPPQKFRSLREIYEEQH----------------AFFSADPVTVNEAATKEEWRKAM 666

Query: 538  KEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGID 717
            +EE++SIEKNQTW+  +LPE K+ I +KW+FKTKY AD  +QKYKARLVV+G+ Q+ G+D
Sbjct: 667  EEEIASIEKNQTWQLVELPEEKHSIGVKWVFKTKYQADDNIQKYKARLVVKGYAQEYGVD 726

Query: 718  YEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            YE+TF+PVARF+T+R +LA+ A   W +YQFDVKSA
Sbjct: 727  YEKTFSPVARFDTLRTLLALGAYMHWPIYQFDVKSA 762


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  206 bits (524), Expect = 1e-56
 Identities = 117/257 (45%), Positives = 147/257 (57%), Gaps = 5/257 (1%)
 Frame = +1

Query: 1    FGCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG + Y LI +  H  LD+KS K +FIGYC  SK Y+LY+P+SGKI VSR+VV DE A W
Sbjct: 668  FGSVAYTLIDSHNHSNLDEKSIKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVXDEKASW 727

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
             W  + +   + VE   E  + + E  Q  V  P                          
Sbjct: 728  TW--RVSEDGALVEISSESEVAQSEDQQPSVQIP-------------------------A 760

Query: 358  XXXXXXXXQFPNLRRSERGQ----VPRRWFPVEGEDTTTPLALFVGDPVTVEEAMEIEEW 525
                      PNL  S   Q     P R F    +   T   LFV DP T EEA+E EEW
Sbjct: 761  XPTPSHSPSSPNLSSSSSSQSSEETPPRKFRSLRDIYETTQVLFVADPTTFEEAVEKEEW 820

Query: 526  RLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQ 705
              AMKEE+ +IEKN+TWE  +LPE KNVI +KW+F+TKYLADG +QK+KARLV +G+ QQ
Sbjct: 821  CSAMKEEIVAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQ 880

Query: 706  QGIDYEETFAPVARFET 756
             G+DY++TF+PVARFET
Sbjct: 881  HGVDYDDTFSPVARFET 897


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score =  202 bits (513), Expect = 3e-55
 Identities = 113/277 (40%), Positives = 157/277 (56%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1    FGCICYVLI-KTARHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FGCI Y  + +  R KLD + +K +FIGY   SKAYRLY+PL+ K+ +SRDV FDE   W
Sbjct: 714  FGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADYW 773

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
             W  +         NED+ +    +  Q D  SP                          
Sbjct: 774  RWSEEEKKVEGLFFNEDDNN----QEEQGDDQSP----------------GTTAPSSPTS 813

Query: 358  XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVG-DPVTVEEAMEIEEWRLA 534
                    + P   RS    +     PVE +   +   L    DPVT EEA+E  +W+ A
Sbjct: 814  SSGSSSLDEAPTRTRS-LNDIYNSTEPVETQFDYSLFCLMTECDPVTYEEAIENNKWKKA 872

Query: 535  MKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGI 714
            M EE+++I +N TWE T LPEG + I +KW++KTK   +G+V+KYKARLV +G+ Q+QG+
Sbjct: 873  MDEEIAAIRRNDTWELTSLPEGHSPIGVKWVYKTKTNKEGKVEKYKARLVAKGYKQRQGV 932

Query: 715  DYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            DY+E FAPVAR +T+R+++A+AAQ +WK+YQ DVKSA
Sbjct: 933  DYDEIFAPVARIDTIRLLIAVAAQYKWKIYQMDVKSA 969


>dbj|GAU44223.1| hypothetical protein TSUD_399870 [Trifolium subterraneum]
          Length = 1182

 Score =  201 bits (510), Expect = 8e-55
 Identities = 120/285 (42%), Positives = 151/285 (52%), Gaps = 10/285 (3%)
 Frame = +1

Query: 1    FGCICYVLIK-TARHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FGCI YV I  T R KLD K  K V +G    SKAY+LYDPL  KI +S+DVVFDE  GW
Sbjct: 580  FGCIGYVHIPDTQRKKLDPKGIKCVLLGVSEESKAYKLYDPLQKKIIISKDVVFDESNGW 639

Query: 178  NWENKNTTQTSQVENE-----DEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXX 342
            NW+ K  TQ+ QV  E       Q I  ++  Q + H+P                     
Sbjct: 640  NWDEKAKTQSPQVIEETISEHSGQGITVEDDQQREEHTP-------------IDENEYEE 686

Query: 343  XXXXXXXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFV----GDPVTVEEAM 510
                         Q P   R   G V      +E  D      L V     DP   EEA 
Sbjct: 687  NYEDNGDVNTTIRQLPPRARKPPGWVQDYVTNIEDNDIEAMQNLVVFRDDSDPHNYEEAS 746

Query: 511  EIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVR 690
            ++  WR AM +E+ SIE+N  WE   LP+    I +KW+FKTKY  +G V+KYKARLV +
Sbjct: 747  KMTVWRKAMDQEIESIERNNPWELVFLPKEAKRIGVKWIFKTKYNENGEVEKYKARLVAK 806

Query: 691  GFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            G++QQ GID+ E FAPVAR++++R IL +AA   W +YQFDVKSA
Sbjct: 807  GYSQQYGIDFNEVFAPVARWDSIRAILVVAASQGWYVYQFDVKSA 851


>gb|PNX60317.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 303

 Score =  188 bits (477), Expect = 1e-54
 Identities = 118/290 (40%), Positives = 158/290 (54%), Gaps = 16/290 (5%)
 Frame = +1

Query: 4   GCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGWN 180
           G +CY  I   R K LD KS+  + +GY   + AY+LY+P++ KIT SRDV F+E   W+
Sbjct: 34  GYLCYRHIPDQRRKKLDDKSEAMILVGY-HTAGAYKLYNPITKKITASRDVTFEEDKCWD 92

Query: 181 WENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXXX 360
           W N  +     +  E    + EQ   +E V +P                           
Sbjct: 93  WNNNVSKGEKYIPFE---LLDEQATEEETVPTP--------------------------- 122

Query: 361 XXXXXXXQFPN-----LRRSERGQVPRRW---FPVEGEDTTTP------LALFVG-DPVT 495
                  Q PN     LRRSE   +P R    +    +D  TP      L LF+  +P+T
Sbjct: 123 -------QAPNNDQVTLRRSEVTSIPNRTLQGYERVSDDMVTPDGDIVHLTLFLDTEPLT 175

Query: 496 VEEAMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKA 675
             EA + EEWR AMKEE++SIEKN+TW  T LP GK  I++KW++K K+L DG + KYKA
Sbjct: 176 YVEASKHEEWRQAMKEEIASIEKNETWNITQLPTGKKPIAVKWIYKLKHLPDGTIAKYKA 235

Query: 676 RLVVRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
           RLV +GF Q+ GID+ E FAPVAR ETVR+++AIA   +W+  Q DVKSA
Sbjct: 236 RLVAKGFLQKHGIDFTEMFAPVARIETVRLVVAIANHLRWEFVQLDVKSA 285


>gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 415

 Score =  191 bits (485), Expect = 1e-54
 Identities = 114/288 (39%), Positives = 158/288 (54%), Gaps = 13/288 (4%)
 Frame = +1

Query: 1   FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
           FGC+ +V I  A R KLD KS + V +G    SKAYRL+DP + +I +S+DV+F+E   W
Sbjct: 117 FGCVAHVHIPEAKRKKLDAKSFRCVMLGISDESKAYRLFDPTTKRIVISKDVIFEENECW 176

Query: 178 NWENKNTTQTSQV----ENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXX 345
           +WE         +    E+E+E++   +EV +    S  +                    
Sbjct: 177 DWERSPEQMKPDLLDWGESEEERNENTEEVREGMGSSSSLSSE----------------- 219

Query: 346 XXXXXXXXXXXXQFPNLRRSERGQVPRRWFP--VEGEDTTTP----LALFV--GDPVTVE 501
                       + P   R  R   P  W      GE+ +      L +F    DP T E
Sbjct: 220 ------------EAPIEGRVRR---PPGWMQDYTSGEEFSEEEIQNLVMFTVASDPTTFE 264

Query: 502 EAMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARL 681
           EA++ E+WR AM  E+ +IEKN TWE TDLP G   I LKW+FKTK   +G V+KYKARL
Sbjct: 265 EAVKSEKWRNAMNNEMEAIEKNNTWELTDLPTGAKTIGLKWIFKTKLNENGEVEKYKARL 324

Query: 682 VVRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
           V +G++QQ G+DY E FAPVAR++T+R+++A+AAQ  W +YQ DVKSA
Sbjct: 325 VAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNVYQLDVKSA 372


>gb|OMO99220.1| hypothetical protein CCACVL1_03887 [Corchorus capsularis]
          Length = 1944

 Score =  196 bits (499), Expect = 3e-53
 Identities = 111/283 (39%), Positives = 157/283 (55%), Gaps = 8/283 (2%)
 Frame = +1

Query: 1    FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FGCI Y  +    R KLD K +K V +G    SKAY+LY+P + K+ +SRDVVF+E   W
Sbjct: 656  FGCIAYAHVPDQKRKKLDDKGEKCVLLGVSEESKAYKLYNPTTKKLIISRDVVFNENEFW 715

Query: 178  NWEN-KNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXX 354
             W++ +  ++T+ + +++   ++ Q V  +      I                       
Sbjct: 716  PWDSPREMSKTASILDDEVDEVVVQPVVPQQQMQQEIGVSTRP----------------- 758

Query: 355  XXXXXXXXXQFPNLRRSERGQVPRRWFPVEG-----EDTTTPLALFVG-DPVTVEEAMEI 516
                          +R +R       F V G      D  + LALF   DPV  EEA++ 
Sbjct: 759  --------------QRIKRRSTLLEGFEVTGLPNFDSDHVSQLALFADCDPVLFEEAVKE 804

Query: 517  EEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGF 696
             +W+ AM EE+ +IEKN TWE  DLPEG+  I +KW++KTK   +G V KYKARLVV+G+
Sbjct: 805  AKWQKAMAEEIKAIEKNNTWELVDLPEGEKAIGVKWVYKTKVKPNGEVDKYKARLVVKGY 864

Query: 697  TQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
             Q+ G+DY E FAPVAR +TVR+++A+AAQN W +YQ DVKSA
Sbjct: 865  KQEYGVDYTEVFAPVARLDTVRMVIALAAQNSWSIYQLDVKSA 907


>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  194 bits (492), Expect = 2e-52
 Identities = 115/288 (39%), Positives = 160/288 (55%), Gaps = 13/288 (4%)
 Frame = +1

Query: 1    FGCICYVLIKT-ARHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FGCI +V +    R KLD KS + + +G    SKAYRL+DP+S KI +SRDVVF+E   W
Sbjct: 417  FGCISHVHVPDHKRVKLDAKSLRCILLGVSEESKAYRLFDPISQKIIISRDVVFEEDQQW 476

Query: 178  NWENKNTTQT-SQVENE-DEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXX 351
             W+N +     + +E E DE++  E + ++E+  +                         
Sbjct: 477  KWDNSHEPAILADLEWESDEETDTEDDGNEEEPEAGE-----------DMGNSESNDSDS 525

Query: 352  XXXXXXXXXXQFPNLRRSERGQVPRRWFP-------VEGEDTTT--PLALFV-GDPVTVE 501
                        P+  R+ R   P  W         +  E++     LALF   DP T +
Sbjct: 526  FENGETTYEDSTPHEGRTRR---PPTWMQDYETGAGLSDEESVNLAQLALFTDSDPTTYD 582

Query: 502  EAMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARL 681
            +A+  E+WRLAM +E+ +IE+N TWE TDLP G   I +KW+FKTK   +G V KYKARL
Sbjct: 583  DAVRSEKWRLAMNQEIEAIERNNTWELTDLPSGGKTIGVKWIFKTKLNENGEVDKYKARL 642

Query: 682  VVRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            V +G++QQ G DY E FAPVAR ET+RI++++AAQ  W +YQ DVKSA
Sbjct: 643  VAKGYSQQYGXDYVEVFAPVARLETIRIVISLAAQKDWMIYQLDVKSA 690


>gb|PNX66111.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 266

 Score =  181 bits (458), Expect = 3e-52
 Identities = 103/256 (40%), Positives = 141/256 (55%), Gaps = 2/256 (0%)
 Frame = +1

Query: 64  KHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGWNWENKNTTQTSQVENEDEQSIL 243
           K V +G    SKAY+LYDP +GKI +SRDVVF+E  GWNW   +  + +Q  N+    +L
Sbjct: 1   KCVLLGLSEESKAYKLYDPENGKIIISRDVVFEENKGWNWNKISDKKQNQSSND----VL 56

Query: 244 EQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFPNLRRSERGQVP 423
             E       +                                     P +RR    Q  
Sbjct: 57  SDEECSTSAPANDNEAPANDNEVQAEVDMNTSSDDSDGIDFQSEVNLPPRVRRPP--QSL 114

Query: 424 RRWFPVEGEDTTTPLALFVG--DPVTVEEAMEIEEWRLAMKEELSSIEKNQTWEPTDLPE 597
             +   E  D    LA++V   DP +  EA++ + W  AM +E+ SIEKNQTWE T LP+
Sbjct: 115 NDFVTGEELDQLHNLAVYVAAEDPTSFSEAVKSKVWIEAMNQEMQSIEKNQTWELTSLPD 174

Query: 598 GKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGIDYEETFAPVARFETVRIILAI 777
           G NVI +KW++KTK+   G + K+KARLV +G+ Q+ GIDY+E FAPVAR++T+R ILAI
Sbjct: 175 GANVIGVKWIYKTKHNEKGEIDKHKARLVAKGYNQKHGIDYDEVFAPVARWDTIRSILAI 234

Query: 778 AAQNQWKLYQFDVKSA 825
           AA+  WK++Q DVKSA
Sbjct: 235 AARESWKVFQLDVKSA 250


>gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1120

 Score =  192 bits (487), Expect = 9e-52
 Identities = 109/287 (37%), Positives = 152/287 (52%), Gaps = 12/287 (4%)
 Frame = +1

Query: 1    FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG ICY+ +    RHKL+ K+ + +F+GY   SK YR+Y+  + K+T+SRD+  DE A W
Sbjct: 596  FGSICYIHVPDEKRHKLEDKTVRGIFLGYSSQSKGYRVYNLQTKKLTISRDIEVDENATW 655

Query: 178  NWENK-----------NTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXX 324
            NWE K           N   TS +E+ ++  ++  E       SP I             
Sbjct: 656  NWEEKRIEKKTIYMPINQPTTSSLEDNNQDIVISPE-------SPRIV------------ 696

Query: 325  XXXXXXXXXXXXXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVGDPVTVEE 504
                                 P    S     PRR   +     T  LA+   +P + EE
Sbjct: 697  ---------------------PQQEESSPESTPRRVRSLVDIYETCNLAIL--EPGSFEE 733

Query: 505  AMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLV 684
            A   E W  AM+EE+  IEKN TWE  D P GK++I +KW++KTK   DG +QK+KARLV
Sbjct: 734  AANQEVWVKAMEEEIKMIEKNNTWELVDFPHGKDIIGVKWVYKTKLNPDGTIQKHKARLV 793

Query: 685  VRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
             +G++Q+ G+DY ETFAPVAR +T+R ++A+AA   W +YQ DVKSA
Sbjct: 794  AKGYSQKPGVDYNETFAPVARLDTIRTLIALAAHKGWNIYQLDVKSA 840


>gb|KYP46539.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 409

 Score =  181 bits (460), Expect = 5e-51
 Identities = 103/287 (35%), Positives = 153/287 (53%), Gaps = 12/287 (4%)
 Frame = +1

Query: 1   FGCICYVLIKTARH-KLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
           FG ICY+ +   +  KL+ K+ + +F+GY   +K YR+Y+  + K+T+SRD+  +E A W
Sbjct: 63  FGSICYIHVLDEKGIKLEDKTVRGIFLGYSSQTKGYRVYNLETKKLTISRDIEVNENATW 122

Query: 178 NWENK-----------NTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXX 324
           NWE K           N   TS +E+ ++  ++  E       SP I             
Sbjct: 123 NWEEKRIEKKIIYMPINQPTTSSLEDNNQDIVISPE-------SPRIV------------ 163

Query: 325 XXXXXXXXXXXXXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVGDPVTVEE 504
                                P    S     PRR   +     T  LA+   +P + EE
Sbjct: 164 ---------------------PQQEESSPESTPRRVRSLVDIYETCNLAML--EPGSFEE 200

Query: 505 AMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLV 684
           A++ E W  +++EE+  IEKN TWE  D P GK++I +KW++KTK   DG +QK+KARLV
Sbjct: 201 AVDQEVWVKSVEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLNPDGTIQKHKARLV 260

Query: 685 VRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            +G++QQ G++Y ETFAPVAR +T+R ++A+A Q  W +YQ DVKSA
Sbjct: 261 AKGYSQQPGVNYNETFAPVARLDTIRALIALATQKGWNIYQLDVKSA 307


>gb|KYP47011.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 409

 Score =  179 bits (454), Expect = 4e-50
 Identities = 112/277 (40%), Positives = 153/277 (55%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1   FGCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
           FG +CY  +   R K LD KS+  +F+GY  ++ +Y+L++P + ++  SRDV FDE + W
Sbjct: 57  FGSLCYRHVPDQRRKKLDDKSEAMIFVGY-NSTGSYKLFNPKNQQVLFSRDVYFDESSSW 115

Query: 178 NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
                 +    + + E +   L  E  QE V+S                           
Sbjct: 116 AEFQSTSDIIPKTQFEWKDEDLVGETYQEVVNSE----------------------CQTV 153

Query: 358 XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVG-DPVTVEEAMEIEEWRLA 534
                    FP LR S+  QV       E  D    +AL    +P+T EEA+  E WR A
Sbjct: 154 ADRPTRVKSFP-LRLSDY-QVYHDSAITEEGDLVQHMALMTDMEPITFEEAISKEVWRSA 211

Query: 535 MKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGI 714
           M+EEL SIEKN TWE  +LP+ K VI +KW+FKTK  +DG + K+KARLV +GF Q++GI
Sbjct: 212 MEEELKSIEKNDTWEMVNLPQNKKVIVVKWVFKTKLKSDGSIAKHKARLVAKGFMQKEGI 271

Query: 715 DYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
           DY E FAPVAR ETVR+I+A+A+   WKL+Q DVKSA
Sbjct: 272 DYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSA 308


>gb|KYP66838.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1317

 Score =  181 bits (460), Expect = 4e-48
 Identities = 108/277 (38%), Positives = 155/277 (55%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1    FGCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG +CY  +   R K LD KS+  +F+GY  ++ +Y+LY+P + ++  SRDV FDE   W
Sbjct: 667  FGSLCYRHVPDQRRKKLDDKSEPMIFVGY-NSTGSYKLYNPKTKQVLFSRDVYFDESNSW 725

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
            +         S+++ + E++    E +QE ++                            
Sbjct: 726  SESQSKIETVSKLQFDWEENNSIGETTQETMND----------------------VCRTV 763

Query: 358  XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVG-DPVTVEEAMEIEEWRLA 534
                     FP+ R S+    P     V+G D    LAL    +P++++EA+  +EWR A
Sbjct: 764  ENRPTRNKNFPS-RLSDYQVYPDNAISVDG-DLVQHLALMADVEPISLDEAITSKEWRSA 821

Query: 535  MKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGI 714
            M+EEL SIEKN TWE  +LP+ K  I +KW+FK K   DG V K+KARLV +GF Q++GI
Sbjct: 822  MEEELRSIEKNHTWEMVELPQNKTPIDVKWVFKIKLKPDGSVAKHKARLVAKGFMQREGI 881

Query: 715  DYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            DY E FAPVAR ETVR+I+A+A+   WKL+Q DVKSA
Sbjct: 882  DYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSA 918


>gb|KYP61818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
 gb|KYP63036.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  180 bits (456), Expect = 1e-47
 Identities = 110/277 (39%), Positives = 154/277 (55%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1    FGCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG +CY  +   R K LD KS+  +F+GY  ++ +Y+L++P + ++  SRDV FDE + W
Sbjct: 664  FGSLCYRHVPDQRRKKLDDKSEAMIFVGY-NSTGSYKLFNPKNQQVLFSRDVYFDESSSW 722

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
                  +    + + E +   L  E  QE V+S                           
Sbjct: 723  AEFQSTSDIIPKFQFEWKDEDLVGETHQEVVNSE----------------------LQMV 760

Query: 358  XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVG-DPVTVEEAMEIEEWRLA 534
                     FP LR S+  Q+       E  D    +AL    +P+T EEA+  E WR A
Sbjct: 761  ADRPTRVRSFP-LRLSDY-QIYHDSAITEEGDLVQHMALLTDMEPITFEEAISKEVWRSA 818

Query: 535  MKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGI 714
            M+EEL SIEKN TWE  +LP+ K  I++KW+FKTK+ +DG + K+KARLV +GF Q++GI
Sbjct: 819  MEEELKSIEKNDTWEMVNLPQNKKAIAVKWVFKTKFKSDGSIAKHKARLVAKGFMQKEGI 878

Query: 715  DYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            DY E FAPVAR ETVR+I+A+A+   WKL+Q DVKSA
Sbjct: 879  DYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSA 915


>gb|KYP68287.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1340

 Score =  180 bits (456), Expect = 1e-47
 Identities = 110/277 (39%), Positives = 154/277 (55%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1    FGCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG +CY  +   R K LD KS+  +F+GY  ++ +Y+L++P + ++  SRDV FDE + W
Sbjct: 690  FGSLCYRHVPDQRRKKLDDKSEAMIFVGY-NSTGSYKLFNPKNQQVLFSRDVYFDESSSW 748

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
                  +    + + E +   L  E  QE V+S                           
Sbjct: 749  AEFQSTSDIIPKFQFEWKDEDLVGETHQEVVNSE----------------------LQMV 786

Query: 358  XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVG-DPVTVEEAMEIEEWRLA 534
                     FP LR S+  Q+       E  D    +AL    +P+T EEA+  E WR A
Sbjct: 787  ADRPTRVRSFP-LRLSDY-QIYHDSAITEEGDLVQHMALLTDMEPITFEEAISKEVWRSA 844

Query: 535  MKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGI 714
            M+EEL SIEKN TWE  +LP+ K  I++KW+FKTK+ +DG + K+KARLV +GF Q++GI
Sbjct: 845  MEEELKSIEKNDTWEMVNLPQNKKAIAVKWVFKTKFKSDGSIAKHKARLVAKGFMQKEGI 904

Query: 715  DYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            DY E FAPVAR ETVR+I+A+A+   WKL+Q DVKSA
Sbjct: 905  DYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSA 941


>gb|KYP31826.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1340

 Score =  180 bits (456), Expect = 1e-47
 Identities = 110/277 (39%), Positives = 154/277 (55%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1    FGCICYVLIKTARHK-LDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG +CY  +   R K LD KS+  +F+GY  ++ +Y+L++P + ++  SRDV FDE + W
Sbjct: 690  FGSLCYRHVPDQRRKKLDDKSEAMIFVGY-NSTGSYKLFNPKNQQVLFSRDVYFDESSSW 748

Query: 178  NWENKNTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXXXXXXX 357
                  +    + + E +   L  E  QE V+S                           
Sbjct: 749  AEFQSTSDIIPKFQFEWKDEDLVGETHQEVVNSE----------------------LQMV 786

Query: 358  XXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVG-DPVTVEEAMEIEEWRLA 534
                     FP LR S+  Q+       E  D    +AL    +P+T EEA+  E WR A
Sbjct: 787  ADRPTRVRSFP-LRLSDY-QIYHDSAITEEGDLVQHMALLTDMEPITFEEAISKEVWRSA 844

Query: 535  MKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGFTQQQGI 714
            M+EEL SIEKN TWE  +LP+ K  I++KW+FKTK+ +DG + K+KARLV +GF Q++GI
Sbjct: 845  MEEELKSIEKNDTWEMVNLPQNKKAIAVKWVFKTKFKSDGSIAKHKARLVAKGFMQKEGI 904

Query: 715  DYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
            DY E FAPVAR ETVR+I+A+A+   WKL+Q DVKSA
Sbjct: 905  DYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSA 941


>gb|KYP60991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 612

 Score =  170 bits (431), Expect = 3e-45
 Identities = 102/283 (36%), Positives = 145/283 (51%), Gaps = 12/283 (4%)
 Frame = +1

Query: 1   FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
           FG ICY+ +    RHKL+ K+ + +F+GY   SK YR+Y+  + K+T+SRD+  DE A W
Sbjct: 139 FGSICYIHVPDEKRHKLEDKTVRGIFLGYSSQSKGYRVYNLQTKKLTISRDIEVDENATW 198

Query: 178 NWENK-----------NTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXX 324
           NWE +           N   TS +E+ ++  ++  E       SP I             
Sbjct: 199 NWEEERIEKKTIYMPINQPTTSSLEDNNQDIVISPE-------SPRIV------------ 239

Query: 325 XXXXXXXXXXXXXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVGDPVTVEE 504
                                P    S     PRR   +     T  LA+   +P + EE
Sbjct: 240 ---------------------PQQEESSPESTPRRVRSLVDIYETCNLAIL--EPGSFEE 276

Query: 505 AMEIEEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLV 684
           A   E W  AM+EE+  IEKN TWE  D P GK++I +KW++KTK   DG +QK+KARLV
Sbjct: 277 AANQEVWVKAMEEEIKMIEKNNTWELVDCPHGKDIIGVKWVYKTKLNPDGTIQKHKARLV 336

Query: 685 VRGFTQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFD 813
            +G++QQ G+DY ETFAPVAR +T+R ++     N+ KL + D
Sbjct: 337 AKGYSQQPGVDYNETFAPVARLDTIRALITPLVTNE-KLQKVD 378


>dbj|GAU30874.1| hypothetical protein TSUD_15600 [Trifolium subterraneum]
          Length = 1166

 Score =  171 bits (434), Expect = 1e-44
 Identities = 107/283 (37%), Positives = 141/283 (49%), Gaps = 8/283 (2%)
 Frame = +1

Query: 1    FGCICYVLIKTA-RHKLDQKSQKHVFIGYCPNSKAYRLYDPLSGKITVSRDVVFDELAGW 177
            FG ICY  I    R KLD KS++ + IGY     AY++Y+P S K+ +S DVV DE + W
Sbjct: 536  FGSICYRHIPDEKRRKLDDKSEQLILIGYDATG-AYKMYNPNSKKVVISTDVVVDEKSQW 594

Query: 178  NWENK-----NTTQTSQVENEDEQSILEQEVSQEDVHSPHIXXXXXXXXXXXXXXXXXXX 342
             W++             V NE  Q +++Q    + V   H                    
Sbjct: 595  KWKSNVNKHIQVNLEDTVTNETVQPVVDQNEEVDHVEEIHTSTDGEEEGDVRRSTRT--- 651

Query: 343  XXXXXXXXXXXXXQFPNLRRSERGQVPRRWFPVEGEDTTTPLALFVGD--PVTVEEAMEI 516
                         +FP++R ++   +      V  +D       F+ D  PV   EA+  
Sbjct: 652  -------------RFPSVRLTDHETILHN---VVNDDGDLVHLAFMADTEPVNWHEALSD 695

Query: 517  EEWRLAMKEELSSIEKNQTWEPTDLPEGKNVISLKWLFKTKYLADGRVQKYKARLVVRGF 696
              W+ AM EE+ SIEKN TW   DLP  KN IS+KW+FK K   DG + K+KARLV RGF
Sbjct: 696  PNWKNAMNEEIRSIEKNNTWRLVDLPTQKNSISVKWIFKIKRNPDGGIVKHKARLVARGF 755

Query: 697  TQQQGIDYEETFAPVARFETVRIILAIAAQNQWKLYQFDVKSA 825
             QQQGIDY E +APVAR ET R+++ IA    W L   DVKSA
Sbjct: 756  LQQQGIDYNEVYAPVARMETSRLVIVIANSMNWSLSHMDVKSA 798