BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00040052
         (544 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OTG20763.1| putative ribonuclease H-like domain, Reverse tran...   279   1e-85
gb|KDP30510.1| hypothetical protein JCGZ_16690 [Jatropha curcas]      229   1e-71
ref|XP_023766058.1| uncharacterized protein LOC111914585 [Lactuc...   228   2e-70
emb|CAD41731.1| OSJNBb0034I13.10 [Oryza sativa Japonica Group]        241   2e-70
gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indi...   238   2e-69
dbj|BAF22809.1| Os08g0125300 [Oryza sativa Japonica Group] >gi|2...   238   3e-69
gb|OTG16582.1| putative zinc finger, CCHC-type [Helianthus annuus]    237   5e-69
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   236   9e-69
dbj|BAB02990.1| retroelement pol polyprotein-like [Arabidopsis t...   236   1e-68
gb|AAG52211.1|AC022288_10 hypothetical protein; 74056-75837 [Ara...   224   7e-68
gb|AAM23251.1|AC092553_17 Putative pol polyprotein [Oryza sativa...   233   1e-67
emb|CAH66624.1| OSIGBa0115A19.5 [Oryza sativa]                        233   1e-67
gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halle...   216   4e-67
gb|AAF97299.1|AC007843_2 Similar to copia-type reverse transcrip...   228   8e-67
gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halle...   215   1e-66
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle...   215   1e-66
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle...   215   1e-66
gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halle...   214   2e-66
gb|AAP68410.1| putative gag/pol polyprotein [Oryza sativa Japoni...   223   2e-66
gb|AFK88548.1| reverse transcriptase, partial [Arabidopsis halle...   214   3e-66

>gb|OTG20763.1| putative ribonuclease H-like domain, Reverse transcriptase,
            RNA-dependent DNA polymerase [Helianthus annuus]
          Length = 920

 Score =  279 bits (714), Expect = 1e-85
 Identities = 134/180 (74%), Positives = 156/180 (86%)
 Frame = -3

Query: 542  HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
            HGIDF+EVF+P+AR ETVRL+L +AA   WEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK
Sbjct: 479  HGIDFDEVFAPIARMETVRLMLALAAYQGWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 538

Query: 362  KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
              + GKVYRL+KALYGLRQAPRAWN KLD TLKSL+FKKC LE A+YT+ S+ S L+VG+
Sbjct: 539  PGDEGKVYRLSKALYGLRQAPRAWNTKLDQTLKSLNFKKCTLESAIYTRTSEASTLIVGV 598

Query: 182  YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            YVDDLI+TGT K+EID FK+QM+  F+MSDLGLL+YYLGIEV Q GG+I IKQ+ Y +KI
Sbjct: 599  YVDDLIVTGTSKKEIDIFKSQMKNKFDMSDLGLLAYYLGIEVIQAGGEIGIKQTGYINKI 658


>gb|KDP30510.1| hypothetical protein JCGZ_16690 [Jatropha curcas]
          Length = 359

 Score =  229 bits (584), Expect = 1e-71
 Identities = 112/180 (62%), Positives = 139/180 (77%)
 Frame = -3

Query: 542 HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
           +G+D++EVF+PVAR ET R +L  AA  +W  HHLDVK+AFL+G+L+EEVYVSQP+GF+ 
Sbjct: 77  YGVDYKEVFAPVARIETARTILAYAAQKQWRDHHLDVKTAFLNGELEEEVYVSQPDGFVD 136

Query: 362 KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
           K N  KV RL KALYGL+QAPRAWN KLD++LKS  F +C  E A+Y KK +D I +VG+
Sbjct: 137 KINPQKVLRLHKALYGLKQAPRAWNTKLDHSLKSFGFHRCPFEHALYMKKEEDDITVVGV 196

Query: 182 YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           YVDDLI+TG+  + I+ FK +M   FEMSDLGLLSYYLGIEV QT   IS  Q+ YASKI
Sbjct: 197 YVDDLILTGSNGKHIESFKQEMMRMFEMSDLGLLSYYLGIEVKQTPDCISFCQAVYASKI 256


>ref|XP_023766058.1| uncharacterized protein LOC111914585 [Lactuca sativa]
          Length = 400

 Score =  228 bits (580), Expect = 2e-70
 Identities = 108/180 (60%), Positives = 140/180 (77%)
 Frame = -3

Query: 542 HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
           +GID++EVF+PVAR E VR++L +A +N W VHHLDVKSAFL+G L+EEVYV+QPEGF K
Sbjct: 4   YGIDYDEVFAPVARIEAVRVILALAGSNGWGVHHLDVKSAFLNGRLEEEVYVTQPEGFEK 63

Query: 362 KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
           K    KVY+L+KALYGL+QAPRAWN  LD  +KSL FK+C  E +VYT+    +IL++G+
Sbjct: 64  KGEGNKVYKLSKALYGLKQAPRAWNSCLDVYVKSLGFKRCPQEYSVYTRLKNGNILIIGV 123

Query: 182 YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           YVDDL++TG+   ++ +FK +M   FEMSDLGLL+YYLGIEV Q    IS+KQ AYA  +
Sbjct: 124 YVDDLLVTGSSTADVKEFKMEMNAKFEMSDLGLLTYYLGIEVNQQNNSISLKQEAYARNL 183


>emb|CAD41731.1| OSJNBb0034I13.10 [Oryza sativa Japonica Group]
          Length = 1425

 Score =  241 bits (615), Expect = 2e-70
 Identities = 120/179 (67%), Positives = 140/179 (78%)
 Frame = -3

Query: 539  GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
            G+DF+EVF+PVAR ETVRLL+ +AA   WE+HH+DVKSAFL+G+L+EEVYV QP GF  K
Sbjct: 988  GVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDDK 1047

Query: 359  ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
             N  KV +L KALYGLRQAPRAWN KLDNTL SL F K A E AVY +   DS L+VG+Y
Sbjct: 1048 TNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGVGDSKLIVGVY 1107

Query: 179  VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            VDDLIITG+ K+EID FK QM++ F MSDLG LSYYLG+EV Q G  I + QSAYA KI
Sbjct: 1108 VDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEGIFLSQSAYAGKI 1166


>gb|EEC84282.1| hypothetical protein OsI_30754 [Oryza sativa Indica Group]
          Length = 1427

 Score =  238 bits (608), Expect = 2e-69
 Identities = 118/179 (65%), Positives = 142/179 (79%)
 Frame = -3

Query: 539  GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
            G+DFEEVF+PVAR +TVR++L IAA+ +WEVHHLDVKSAFL+GDL+EEVYV+QPEGF+K+
Sbjct: 989  GVDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKR 1048

Query: 359  ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
                 V RL+KALYGLRQAPRAWN +LD  LK L F +C  EQAVYT+    + ++VG+Y
Sbjct: 1049 GEEHLVLRLSKALYGLRQAPRAWNTRLDKCLKELGFARCTQEQAVYTRGKGQAGVIVGVY 1108

Query: 179  VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            VDDLI+TG   +EI  FK QM   FEMSDLGLLSYYLGIEV Q    I+IKQ+AYA KI
Sbjct: 1109 VDDLIVTGENPQEIAMFKQQMMGEFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKI 1167


>dbj|BAF22809.1| Os08g0125300 [Oryza sativa Japonica Group]
 dbj|BAG92574.1| unnamed protein product [Oryza sativa Japonica Group]
 dbj|BAT03649.1| Os08g0125300 [Oryza sativa Japonica Group]
          Length = 1427

 Score =  238 bits (606), Expect = 3e-69
 Identities = 118/179 (65%), Positives = 141/179 (78%)
 Frame = -3

Query: 539  GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
            G+DFEEVF+PVAR +TVR++L IAA+ +WEVHHLDVKSAFL+GDL+EEVYV+QPEGF+K+
Sbjct: 989  GVDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKR 1048

Query: 359  ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
                 V RL+KALYGLRQAPRAWN +LD  LK L F +C  EQAVYT+    + ++VG+Y
Sbjct: 1049 GEEHLVLRLSKALYGLRQAPRAWNTRLDKCLKELGFARCTQEQAVYTRGKGQAGVIVGVY 1108

Query: 179  VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            VDDLI+TG    EI  FK QM   FEMSDLGLLSYYLGIEV Q    I+IKQ+AYA KI
Sbjct: 1109 VDDLIVTGENPHEIAMFKQQMMGEFEMSDLGLLSYYLGIEVIQGENGIAIKQAAYAKKI 1167


>gb|OTG16582.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1427

 Score =  237 bits (604), Expect = 5e-69
 Identities = 118/179 (65%), Positives = 139/179 (77%)
 Frame = -3

Query: 539  GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
            G+DFE+ F+PVAR ETVRL++ IAA+  W VHHLDVKSAFL+GDL+EEVYV QPEGF  K
Sbjct: 983  GVDFEDAFAPVARMETVRLIIAIAASKGWPVHHLDVKSAFLNGDLQEEVYVVQPEGFKVK 1042

Query: 359  ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
                 VY+L KALYGLRQAPRAWN KLD TLK L F KC  EQAVYT     S L+VG+Y
Sbjct: 1043 GKEHLVYKLHKALYGLRQAPRAWNSKLDKTLKELGFNKCVHEQAVYTLNKSGSQLIVGVY 1102

Query: 179  VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            VDD+I+TG+   ++DKFK +M+  F+MSDLGLLSYYLGIEV Q    I++KQSAYA KI
Sbjct: 1103 VDDIIVTGSKISDVDKFKEKMKTLFDMSDLGLLSYYLGIEVQQNDKGITLKQSAYAKKI 1161


>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  236 bits (602), Expect = 9e-69
 Identities = 114/180 (63%), Positives = 140/180 (77%)
 Frame = -3

Query: 542  HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
            HGIDFEEVF+PVAR E++RLL+ +A+   WE+HHLDVK+AFLHG+L EEVYV+QPEGF K
Sbjct: 793  HGIDFEEVFAPVARIESIRLLISLASAKGWELHHLDVKTAFLHGELNEEVYVTQPEGFEK 852

Query: 362  KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
            K    KV++L+KALYGLRQAPRAWN KLD  LKSL FKKC  E +VY ++  D +L++ I
Sbjct: 853  KGEEHKVFKLSKALYGLRQAPRAWNTKLDRVLKSLRFKKCMKESSVYRREEGDKLLIIAI 912

Query: 182  YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            YVDDL +TG   + I +FK  M   FEMSDLGLL+YYLGIEV Q+   I+IKQ AYA +I
Sbjct: 913  YVDDLFVTGNSTKIIKEFKTAMSHKFEMSDLGLLTYYLGIEVKQSTRGITIKQEAYAKRI 972


>dbj|BAB02990.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1250

 Score =  236 bits (601), Expect = 1e-68
 Identities = 115/180 (63%), Positives = 141/180 (78%)
 Frame = -3

Query: 542  HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
            HGIDF+EVF+PVAR ETVR ++ +AA+N WEVHHLDVK+AFLHG+LKE V+VSQPEGF +
Sbjct: 782  HGIDFDEVFAPVARIETVRFIIALAASNGWEVHHLDVKTAFLHGELKEIVFVSQPEGFTE 841

Query: 362  KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
            K + GKVY+L KALYGLRQAPRAWN KL+  L  L F KC+ E ++Y K+ KD +LLV +
Sbjct: 842  KGSEGKVYKLNKALYGLRQAPRAWNNKLNKILGELKFVKCSKEPSLYRKQEKDDLLLVEV 901

Query: 182  YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            YVDDL+I+G+  + I+ FK  M   FEMSDLGLL+YYLGIEV Q  G I +KQ  YA KI
Sbjct: 902  YVDDLLISGSSLKLINDFKKGMASKFEMSDLGLLTYYLGIEVIQYNGGIMLKQGRYAEKI 961


>gb|AAG52211.1|AC022288_10 hypothetical protein; 74056-75837 [Arabidopsis thaliana]
          Length = 503

 Score =  224 bits (570), Expect = 7e-68
 Identities = 109/180 (60%), Positives = 139/180 (77%)
 Frame = -3

Query: 542 HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
           +G+DFEEVF+PVAR ET+RLL+ +AA++ WE+HHLDVK+AFLHG+LKE VYV QPEGF +
Sbjct: 49  YGVDFEEVFAPVARIETIRLLINLAASHGWEIHHLDVKTAFLHGELKETVYVYQPEGFER 108

Query: 362 KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
           K +  KVY+L KALYGLRQAPRAWN KL++ L  L F KC+ E +VY K+    +LL+ I
Sbjct: 109 KGSEDKVYKLNKALYGLRQAPRAWNNKLNHILVELQFLKCSKEPSVYRKEVSKDLLLIAI 168

Query: 182 YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           YVDDL +TGT  + I+KFK +M   FEMS+LG L+YYLGIEV Q    I++ Q+ YA KI
Sbjct: 169 YVDDLFVTGTNLDIINKFKEEMSSKFEMSNLGKLTYYLGIEVIQHKDGIALNQNRYALKI 228


>gb|AAM23251.1|AC092553_17 Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAM47622.1|AC122147_11 Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAP51989.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
 dbj|BAF26012.1| Os10g0130700 [Oryza sativa Japonica Group]
          Length = 1426

 Score =  233 bits (594), Expect = 1e-67
 Identities = 116/179 (64%), Positives = 140/179 (78%)
 Frame = -3

Query: 539  GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
            GIDFEEVF+PVAR ETVRLL+ +AAN  WE+HH+DVKSAFL+GDL+EEVYV QP GFI+K
Sbjct: 989  GIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGDLEEEVYVVQPPGFIEK 1048

Query: 359  ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               G+V RL KALYGL+QAPRAWN KL NTL SL+F K   E AVY + +  S L+VG+Y
Sbjct: 1049 GKEGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYVRGTGSSRLIVGVY 1108

Query: 179  VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            VDDLII+G    EID FK +M++ F MSDLGLLSYYLG+EV Q    + + Q+AYA+KI
Sbjct: 1109 VDDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVVQKDDGVFLSQTAYAAKI 1167


>emb|CAH66624.1| OSIGBa0115A19.5 [Oryza sativa]
          Length = 1426

 Score =  233 bits (594), Expect = 1e-67
 Identities = 116/179 (64%), Positives = 140/179 (78%)
 Frame = -3

Query: 539  GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
            GIDFEEVF+PVAR ETVRLL+ +AAN  WE+HH+DVKSAFL+GDL+EEVYV QP GFI+K
Sbjct: 989  GIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGDLEEEVYVVQPPGFIEK 1048

Query: 359  ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               G+V RL KALYGL+QAPRAWN KL NTL SL+F K   E AVY + +  S L+VG+Y
Sbjct: 1049 GKEGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYVRGTGSSRLIVGVY 1108

Query: 179  VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
            VDDLII+G    EID FK +M++ F MSDLGLLSYYLG+EV Q    + + Q+AYA+KI
Sbjct: 1109 VDDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVVQKDDGVFLSQTAYAAKI 1167


>gb|AFK88541.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  216 bits (551), Expect = 4e-67
 Identities = 102/179 (56%), Positives = 132/179 (73%)
 Frame = -3

Query: 539 GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
           GID++EVF+PVAR ETVRL++++AA NKW++H +DVKSAFL+GDL+EEVY+ QP+G+I K
Sbjct: 73  GIDYDEVFAPVARLETVRLIILLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVK 132

Query: 359 ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               KV RL KALYGL+QAPRAWN ++D   K  DF KC  E A+Y K  KD IL+  +Y
Sbjct: 133 GEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDGILIACLY 192

Query: 179 VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           VDDLI TG      ++FK +M + FEM+D+GL+SYYLGIEV Q    I I Q  YA ++
Sbjct: 193 VDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEV 251


>gb|AAF97299.1|AC007843_2 Similar to copia-type reverse transcriptase proteins [Arabidopsis
           thaliana]
          Length = 833

 Score =  228 bits (580), Expect = 8e-67
 Identities = 112/180 (62%), Positives = 138/180 (76%)
 Frame = -3

Query: 542 HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
           +G+DFEEVF+PVAR ET+RLL+ +AA++ WE+HHLDVK+AFLHG+LKE VYV Q EGF K
Sbjct: 402 YGVDFEEVFAPVARIETIRLLIDLAASHGWEIHHLDVKTAFLHGELKETVYVCQLEGFEK 461

Query: 362 KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
           +    KVYRL KALYGLRQAPRAWN KL+N L  L + KC+ E +VY K+  + +++V +
Sbjct: 462 QGREEKVYRLNKALYGLRQAPRAWNNKLNNILMELGYNKCSKEPSVYRKQVSNHVMIVAV 521

Query: 182 YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           YVDDL +TGT  E I KFK +M   FEMSDLGLLSYYLGIEV Q    I++ QS YA KI
Sbjct: 522 YVDDLFVTGTSLELILKFKKEMSSKFEMSDLGLLSYYLGIEVIQHSKGITLNQSRYAIKI 581


>gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  215 bits (548), Expect = 1e-66
 Identities = 102/179 (56%), Positives = 131/179 (73%)
 Frame = -3

Query: 539 GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
           GID++EVF+PVAR ETVRL++ +AA NKW++H +DVKSAFL+GDL+EEVY+ QP+G+I K
Sbjct: 73  GIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVK 132

Query: 359 ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               KV RL KALYGL+QAPRAWN ++D   K  DF KC  E A+Y K  KD IL+  +Y
Sbjct: 133 GEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLY 192

Query: 179 VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           VDDLI TG      ++FK +M + FEM+D+GL+SYYLGIEV Q    I I Q  YA ++
Sbjct: 193 VDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEV 251


>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
 gb|AFK88545.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  215 bits (548), Expect = 1e-66
 Identities = 102/179 (56%), Positives = 131/179 (73%)
 Frame = -3

Query: 539 GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
           GID++EVF+PVAR ETVRL++ +AA NKW++H +DVKSAFL+GDL+EEVY+ QP+G+I K
Sbjct: 73  GIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVK 132

Query: 359 ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               KV RL KALYGL+QAPRAWN ++D   K  DF KC  E A+Y K  KD IL+  +Y
Sbjct: 133 GEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLY 192

Query: 179 VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           VDDLI TG      ++FK +M + FEM+D+GL+SYYLGIEV Q    I I Q  YA ++
Sbjct: 193 VDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEV 251


>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  215 bits (547), Expect = 1e-66
 Identities = 102/179 (56%), Positives = 131/179 (73%)
 Frame = -3

Query: 539 GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
           GID++EVF+PVAR ETVRL++ +AA NKW++H +DVKSAFL+GDL+EEVY+ QP+G+I K
Sbjct: 73  GIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVK 132

Query: 359 ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               KV RL KALYGL+QAPRAWN ++D   K  DF KC  E A+Y K  KD IL+  +Y
Sbjct: 133 GEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLY 192

Query: 179 VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           VDDLI TG      ++FK +M + FEM+D+GL+SYYLGIEV Q    I I Q  YA ++
Sbjct: 193 VDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNRIFITQEGYAKEV 251


>gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  214 bits (546), Expect = 2e-66
 Identities = 101/179 (56%), Positives = 131/179 (73%)
 Frame = -3

Query: 539 GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
           GID++EVF+P+AR ETVRL++ +AA NKW++H +DVKSAFL+GDL+EEVY+ QP+G+I K
Sbjct: 73  GIDYDEVFAPIARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVK 132

Query: 359 ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               KV RL KALYGL+QAPRAWN ++D   K  DF KC  E A+Y K  KD IL+  +Y
Sbjct: 133 GEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLY 192

Query: 179 VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           VDDLI TG      ++FK +M + FEM+D+GL+SYYLGIEV Q    I I Q  YA ++
Sbjct: 193 VDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEV 251


>gb|AAP68410.1| putative gag/pol polyprotein [Oryza sativa Japonica Group]
          Length = 653

 Score =  223 bits (569), Expect = 2e-66
 Identities = 109/180 (60%), Positives = 138/180 (76%)
 Frame = -3

Query: 542 HGIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIK 363
           HG+D++EVF+PVAR ETVRLL+ +AA   WE+HH+DVKSAFL+GDL+E+VYV QP GF+ 
Sbjct: 344 HGVDYDEVFAPVARMETVRLLVAMAAQEGWEIHHMDVKSAFLNGDLEEDVYVVQPPGFVD 403

Query: 362 KENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGI 183
           +E+  KV  L K LYGL+QAPRAWN KLD +L SL F++   E AVYT+   D+ L+VG+
Sbjct: 404 EEHPDKVLILQKTLYGLKQAPRAWNAKLDESLVSLGFRRSVTEGAVYTRGRGDARLIVGV 463

Query: 182 YVDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           YVDDLIITG    EI KFK QM   F MSDL LL+YYLG+EV Q+   +++ QSAYA+KI
Sbjct: 464 YVDDLIITGAKVGEISKFKEQMRSLFSMSDLELLTYYLGMEVNQSSEGVTMSQSAYATKI 523


>gb|AFK88548.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  214 bits (545), Expect = 3e-66
 Identities = 101/179 (56%), Positives = 130/179 (72%)
 Frame = -3

Query: 539 GIDFEEVFSPVARTETVRLLLVIAANNKWEVHHLDVKSAFLHGDLKEEVYVSQPEGFIKK 360
           GID++EVF+PVAR ETVRL++ +AA NKW++H +DVKSAFL+GD +EEVY+ QP+G+I K
Sbjct: 73  GIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDFEEEVYIEQPQGYIVK 132

Query: 359 ENTGKVYRLTKALYGLRQAPRAWNIKLDNTLKSLDFKKCALEQAVYTKKSKDSILLVGIY 180
               KV RL KALYGL+QAPRAWN ++D   K  DF KC  E A+Y K  KD IL+  +Y
Sbjct: 133 GEENKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLY 192

Query: 179 VDDLIITGTPKEEIDKFKAQMEENFEMSDLGLLSYYLGIEVTQTGGDISIKQSAYASKI 3
           VDDLI TG      ++FK +M + FEM+D+GL+SYYLGIEV Q    I I Q  YA ++
Sbjct: 193 VDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEV 251