BLASTX nr result
ID: Chrysanthemum22_contig00038684
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00038684
(443 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ARU07799.1| RpoC2 (chloroplast) [Artemisia gmelinii] 62 4e-08
ref|YP_009307741.1| RpoC2 (chloroplast) [Artemisia gmelinii] >gi... 62 4e-08
gb|ANS11246.1| RpoC2 (chloroplast) [Artemisia fukudo] 62 4e-08
ref|YP_009111726.1| RNA polymerase beta subunit-2 (chloroplast) ... 62 4e-08
gb|AVI25898.1| RNA polymerase beta subunit-2 (chloroplast) [Chry... 62 4e-08
gb|ATL16925.1| RNA polymerase beta'' subunit (chloroplast) [Chry... 62 4e-08
ref|YP_009365230.1| RNA polymerase beta'' subunit (plastid) [Art... 62 4e-08
ref|YP_009272066.1| RpoC2 (chloroplast) [Artemisia argyi] >gi|74... 62 4e-08
ref|YP_007624784.1| RNA polymerase beta'' subunit (chloroplast) ... 62 4e-08
ref|YP_007474718.1| RNA polymerase beta subunit-2 (chloroplast) ... 62 4e-08
ref|YP_007353755.1| RNA polymerase beta subunit-2 (chloroplast) ... 62 4e-08
gb|ATL16862.1| RNA polymerase beta'' subunit (chloroplast) [Chry... 59 2e-07
ref|YP_009355045.1| RNA polymerase beta'' subunit (plastid) [Ech... 59 3e-07
ref|YP_009354960.1| RNA polymerase beta'' subunit (plastid) [Ech... 59 3e-07
ref|YP_009307829.1| RpoC2 (chloroplast) [Artemisia capillaris] >... 59 3e-07
gb|AKZ23950.1| RNA polymerase beta'' subunit (plastid) [Silphium... 58 6e-07
gb|AJE74911.1| RNA polymerase beta'' subunit (plastid) [Achillea... 58 6e-07
gb|AEX99503.1| RNA polymerase beta subunit-2 (chloroplast) [Chry... 58 6e-07
ref|YP_009355215.1| RNA polymerase beta'' subunit (plastid) [Ech... 57 1e-06
ref|YP_009354790.1| RNA polymerase beta'' subunit (plastid) [Ech... 57 1e-06
>gb|ARU07799.1| RpoC2 (chloroplast) [Artemisia gmelinii]
Length = 1379
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 945 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 991
>ref|YP_009307741.1| RpoC2 (chloroplast) [Artemisia gmelinii]
gb|AOR82575.1| RpoC2 (chloroplast) [Artemisia gmelinii]
Length = 1379
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 945 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 991
>gb|ANS11246.1| RpoC2 (chloroplast) [Artemisia fukudo]
Length = 1379
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 945 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 991
>ref|YP_009111726.1| RNA polymerase beta subunit-2 (chloroplast) [Artemisia montana]
gb|AHJ61134.1| RNA polymerase beta subunit-2 (chloroplast) [Artemisia montana]
Length = 1380
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>gb|AVI25898.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum boreale]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>gb|ATL16925.1| RNA polymerase beta'' subunit (chloroplast) [Chrysanthemum zawadskii
subsp. coreanum]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>ref|YP_009365230.1| RNA polymerase beta'' subunit (plastid) [Artemisia annua]
gb|ARJ60744.1| RNA polymerase beta'' subunit (plastid) [Artemisia annua]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>ref|YP_009272066.1| RpoC2 (chloroplast) [Artemisia argyi]
gb|AJB98617.1| RpoC2 (chloroplast) [Artemisia argyi]
gb|ATL16541.1| RNA polymerase beta'' subunit (chloroplast) [Artemisia princeps]
gb|ATL16603.1| RNA polymerase beta'' subunit (chloroplast) [Artemisia argyrophylla]
gb|ATL16665.1| RNA polymerase beta'' subunit (chloroplast) [Artemisia montana]
gb|ATU84308.1| RNA polymerase beta' subunit (chloroplast) [Artemisia annua]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>ref|YP_007624784.1| RNA polymerase beta'' subunit (chloroplast) [Artemisia frigida]
gb|AFP98810.1| RNA polymerase beta'' subunit (chloroplast) [Artemisia frigida]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>ref|YP_007474718.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum indicum]
gb|AEX99267.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum indicum]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>ref|YP_007353755.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum x
morifolium]
gb|AFA45263.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum x
morifolium]
Length = 1383
Score = 61.6 bits (148), Expect = 4e-08
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YNFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNFDLF 995
>gb|ATL16862.1| RNA polymerase beta'' subunit (chloroplast) [Chrysanthemum zawadskii
var. latilobum]
Length = 1383
Score = 59.3 bits (142), Expect = 2e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P YN D F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPIYNLDLF 995
>ref|YP_009355045.1| RNA polymerase beta'' subunit (plastid) [Echinacea tennesseensis]
gb|ARB03210.1| RNA polymerase beta'' subunit (plastid) [Echinacea tennesseensis]
Length = 1379
Score = 58.9 bits (141), Expect = 3e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKD LIP NSLGPL TG P YNFD+F
Sbjct: 947 CSRIGPFNDVKSTNVIKESIKKDPLIPFRNSLGPLGTGFPIYNFDFF 993
>ref|YP_009354960.1| RNA polymerase beta'' subunit (plastid) [Echinacea speciosa]
gb|ARB03125.1| RNA polymerase beta'' subunit (plastid) [Echinacea speciosa]
Length = 1379
Score = 58.9 bits (141), Expect = 3e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKD LIP NSLGPL TG P YNFD+F
Sbjct: 947 CSRIGPFNDVKSTNVIKESIKKDPLIPFRNSLGPLGTGFPIYNFDFF 993
>ref|YP_009307829.1| RpoC2 (chloroplast) [Artemisia capillaris]
gb|AOR82663.1| RpoC2 (chloroplast) [Artemisia capillaris]
gb|ARU07887.1| RpoC2 (chloroplast) [Artemisia capillaris]
Length = 1379
Score = 58.9 bits (141), Expect = 3e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKD LIP+ NSLGPL TG P YNFD F
Sbjct: 945 CSRIGPFNDVKSTNVIKESIKKDPLIPIRNSLGPLGTGFPIYNFDLF 991
>gb|AKZ23950.1| RNA polymerase beta'' subunit (plastid) [Silphium integrifolium]
Length = 1377
Score = 58.2 bits (139), Expect = 6e-07
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV V++E IKKD LIP+ NSLGPL TG P YNFD+F
Sbjct: 947 CSRIGPFNDVKSPNVIKESIKKDPLIPIRNSLGPLGTGFPIYNFDFF 993
>gb|AJE74911.1| RNA polymerase beta'' subunit (plastid) [Achillea millefolium]
Length = 1381
Score = 58.2 bits (139), Expect = 6e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P NFD F
Sbjct: 947 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPISNFDLF 993
>gb|AEX99503.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum indicum]
Length = 1383
Score = 58.2 bits (139), Expect = 6e-07
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKDLLIP+ NSLGPL TG P NFD F
Sbjct: 949 CSRIGPFNDVKSTNVIKESIKKDLLIPIRNSLGPLGTGFPISNFDLF 995
>ref|YP_009355215.1| RNA polymerase beta'' subunit (plastid) [Echinacea sanguinea]
gb|ARB03380.1| RNA polymerase beta'' subunit (plastid) [Echinacea sanguinea]
Length = 1379
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKD LIP NSLGPL TG P YNFD F
Sbjct: 947 CSRIGPFNDVKSTNVIKESIKKDPLIPFRNSLGPLGTGFPIYNFDLF 993
>ref|YP_009354790.1| RNA polymerase beta'' subunit (plastid) [Echinacea atrorubens]
gb|ARB02955.1| RNA polymerase beta'' subunit (plastid) [Echinacea atrorubens]
Length = 1379
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = -1
Query: 146 CA*VC*FNDVNFTIVVEELIKKDLLIPVINSLGPLETGSPTYNFDYF 6
C+ + FNDV T V++E IKKD LIP NSLGPL TG P YNFD F
Sbjct: 947 CSRIGPFNDVKSTNVIKESIKKDPLIPFRNSLGPLGTGFPIYNFDLF 993