BLASTX nr result
ID: Chrysanthemum22_contig00037244
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00037244
(553 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|OTG07182.1| putative zinc finger, CCHC-type [Helianthus annuus] 62 5e-18
gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Tri... 58 6e-17
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 62 2e-16
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 61 2e-16
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 61 2e-16
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 62 2e-15
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 57 2e-14
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 57 2e-14
dbj|BAA22288.1| polyprotein [Oryza australiensis] 60 3e-14
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 60 5e-14
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 62 6e-14
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 60 6e-14
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 62 6e-14
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 65 6e-14
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo... 54 3e-13
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 59 1e-12
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 63 9e-12
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-... 60 9e-12
gb|KRY04744.1| Retrovirus-related Pol polyprotein from transposo... 56 2e-11
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 58 9e-11
>gb|OTG07182.1| putative zinc finger, CCHC-type [Helianthus annuus]
Length = 1325
Score = 62.4 bits (150), Expect(3) = 5e-18
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
+G+L S +SFD CES ++GK+ + PF H ERA DLLGLIH+DVC
Sbjct: 462 EGILESTGTDSFDDCESCLAGKLTKDPFTHVGERASDLLGLIHSDVC 508
Score = 41.6 bits (96), Expect(3) = 5e-18
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = -2
Query: 315 YFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYNLESTYLWHCRLTHISKKHIE 148
YF NG+YEI++ +P+ N SK K ++LWHCRL HISK ++
Sbjct: 407 YFEAKSRNGIYEINV---QPSSNIYHL--SKCQKNGTSDSFLWHCRLGHISKARVK 457
Score = 34.3 bits (77), Expect(3) = 5e-18
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGIS 336
+NC YAP + R ++SVS L + GF F IS
Sbjct: 366 NNCLYAPGLTRNIISVSLLYEQGFRYVFNGIAIS 399
>gb|PNX85475.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
Length = 540
Score = 58.2 bits (139), Expect(3) = 6e-17
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DG+L+S + ES++ C S + GK+ + PF ERA DLLGLIHTDVC
Sbjct: 377 DGMLDSFDFESYETCRSCLLGKMTKPPFTGHKERASDLLGLIHTDVC 423
Score = 44.3 bits (103), Expect(3) = 6e-17
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+ D +Y + + NG+Y +D+ N+N+ KR K N L TYLWHCRL HI++
Sbjct: 316 YLDNILYANAIMINGLYILDLDMPVYNINA------KRIKPNELNPTYLWHCRLGHINEN 369
Query: 156 HI 151
I
Sbjct: 370 RI 371
Score = 32.3 bits (72), Expect(3) = 6e-17
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 434 NCHYAPFIIRGVVSVSCLIDNGF 366
NC+Y P I R ++SVSCL GF
Sbjct: 282 NCYYVPAISRNIISVSCLDKCGF 304
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 62.0 bits (149), Expect(3) = 2e-16
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S ESF+ CES + GK+ + PF Q+ERA +LLGL+HTD+C
Sbjct: 417 DGLLHSFGFESFETCESCLLGKMTKAPFTGQSERASELLGLVHTDIC 463
Score = 42.7 bits (99), Expect(3) = 2e-16
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF+ NG+Y +++ S++ ++KR + N L T++WHCR HI++K
Sbjct: 355 YYNDIFYFNAPMMNGLYIVNLDGC-----SVYNINAKRQRPNDLNPTFIWHCRFGHINEK 409
Query: 156 HIE 148
+E
Sbjct: 410 CME 412
Score = 28.5 bits (62), Expect(3) = 2e-16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGISV 333
+NC+ P + + V+S SCL G+ D G SV
Sbjct: 320 NNCYCIPALCKNVISASCLQAEGYGFRSVDNGCSV 354
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 61.2 bits (147), Expect(3) = 2e-16
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q++RA +LLGL+HTDVC
Sbjct: 550 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLVHTDVC 596
Score = 43.5 bits (101), Expect(3) = 2e-16
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF NG+Y +++ S++ ++KR N L T++WHCRL HI++K
Sbjct: 488 YYNDLFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQHPNDLNPTFIWHCRLGHINEK 542
Query: 156 HIE 148
+E
Sbjct: 543 RME 545
Score = 28.1 bits (61), Expect(3) = 2e-16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGISV 333
+NC+ P + + V+S SCL G+ D G SV
Sbjct: 453 NNCYCIPALCKNVISASCLQAEGYGFRSMDNGCSV 487
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 61.2 bits (147), Expect(3) = 2e-16
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q++RA +LLGL+HTDVC
Sbjct: 550 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLVHTDVC 596
Score = 43.5 bits (101), Expect(3) = 2e-16
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF NG+Y +++ S++ ++KR N L T++WHCRL HI++K
Sbjct: 488 YYNDLFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQHPNDLNPTFIWHCRLGHINEK 542
Query: 156 HIE 148
+E
Sbjct: 543 RME 545
Score = 28.1 bits (61), Expect(3) = 2e-16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGISV 333
+NC+ P + + V+S SCL G+ D G SV
Sbjct: 453 NNCYCIPALCKNVISASCLQAEGYGFRSMDNGCSV 487
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA93176.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 61.6 bits (148), Expect(3) = 2e-15
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q+E+A +LLGL+HTDVC
Sbjct: 343 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGLVHTDVC 389
Score = 43.5 bits (101), Expect(3) = 2e-15
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF NG+Y +++ S++ ++KR + N L T++WHCRL HI+++
Sbjct: 281 YYNDIFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQRPNDLNPTFIWHCRLGHINER 335
Query: 156 HIE 148
+E
Sbjct: 336 RME 338
Score = 24.6 bits (52), Expect(3) = 2e-15
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGISV 333
+NC+ + + V+S SCL G+ D G SV
Sbjct: 246 NNCYCILALCKNVISASCLQAEGYGFRSVDNGCSV 280
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 57.0 bits (136), Expect(3) = 2e-14
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF ES + GK+ + PF Q+ERA +LLGL+HTDVC
Sbjct: 510 DGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLVHTDVC 556
Score = 44.3 bits (103), Expect(3) = 2e-14
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF V NG+Y +++ S++ ++KR N L T++WHCRL HI++K
Sbjct: 448 YYNDIFYFHVPMMNGLYIVNLDGC-----SVYNINAKRQCPNYLNPTFIWHCRLGHINEK 502
Query: 156 HIE 148
+E
Sbjct: 503 RME 505
Score = 25.0 bits (53), Expect(3) = 2e-14
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGISV 333
+NC+ + + V+S SCL G+ D G SV
Sbjct: 413 NNCYCIRALCKNVISASCLQAEGYGFRSVDNGCSV 447
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 57.0 bits (136), Expect(3) = 2e-14
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF ES + GK+ + PF Q+ERA +LLGL+HTDVC
Sbjct: 437 DGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLVHTDVC 483
Score = 44.3 bits (103), Expect(3) = 2e-14
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF V NG+Y +++ S++ ++KR N L T++WHCRL HI++K
Sbjct: 375 YYNDIFYFHVPMMNGLYIVNLDGC-----SVYNINAKRQCPNYLNPTFIWHCRLGHINEK 429
Query: 156 HIE 148
+E
Sbjct: 430 RME 432
Score = 25.0 bits (53), Expect(3) = 2e-14
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTDFGISV 333
+NC+ + + V+S SCL G+ D G SV
Sbjct: 340 NNCYCIRALCKNVISASCLQAEGYGFRSVDNGCSV 374
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 60.1 bits (144), Expect(3) = 3e-14
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF +ERA DLL L+HTDVC
Sbjct: 458 DGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVC 504
Score = 39.7 bits (91), Expect(3) = 3e-14
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 315 YFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKKHIE 148
YF NG+Y +++ + I+ +++R N + T++WHCRL HI+KK +E
Sbjct: 402 YFHAPLVNGLYVLNLE-----ASPIYNINTERQLSNDINPTFIWHCRLGHINKKRME 453
Score = 25.8 bits (55), Expect(3) = 3e-14
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGF 366
+NC+ P + + V+S SCL G+
Sbjct: 361 NNCYCVPTLCQNVISASCLQAEGY 384
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 60.5 bits (145), Expect(2) = 5e-14
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q+ERA +LL L+HTDVC
Sbjct: 453 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVC 499
Score = 44.7 bits (104), Expect(2) = 5e-14
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF NG+Y +++ S++ ++KR + N L T++WHCRL HI++K
Sbjct: 391 YYNDIFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQRPNDLNPTFIWHCRLGHINEK 445
Query: 156 HIE 148
+E
Sbjct: 446 RME 448
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 61.6 bits (148), Expect(2) = 6e-14
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF CES + GK+ + PF Q+ERA +LLGL+HTDVC
Sbjct: 423 DGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDVC 469
Score = 43.1 bits (100), Expect(2) = 6e-14
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAK-YNLESTYLWHCRLTHISKK 157
+Y+ YF NG+Y +++ S++ ++KR + NL T++WHC L HI++K
Sbjct: 361 YYNDIFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQRPNNLNPTFIWHCCLGHINEK 415
Query: 156 HIE 148
IE
Sbjct: 416 RIE 418
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 60.5 bits (145), Expect(2) = 6e-14
Identities = 27/47 (57%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q+ERA +LL L+HTDVC
Sbjct: 434 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVC 480
Score = 44.3 bits (103), Expect(2) = 6e-14
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF +G+Y +++ N S++ ++KR + N L T++WHCRL HI++K
Sbjct: 372 YYNDIFYFHAPMMSGLYIVNL-----NGYSVYNINAKRQRPNDLNPTFIWHCRLGHINEK 426
Query: 156 HIE 148
+E
Sbjct: 427 RME 429
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 61.6 bits (148), Expect(2) = 6e-14
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF CES + GK+ + PF Q+ERA +LLGL+HTDVC
Sbjct: 336 DGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLVHTDVC 382
Score = 43.1 bits (100), Expect(2) = 6e-14
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAK-YNLESTYLWHCRLTHISKK 157
+Y+ YF NG+Y +++ S++ ++KR + NL T++WHC L HI++K
Sbjct: 274 YYNDIFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQRPNNLNPTFIWHCCLGHINEK 328
Query: 156 HIE 148
IE
Sbjct: 329 RIE 331
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana]
emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 65.1 bits (157), Expect(2) = 6e-14
Identities = 32/56 (57%), Positives = 40/56 (71%)
Frame = -1
Query: 169 HKQETH*KHDGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
H Q+ H DGLLNS + ES++ CES + GK+ + PF +ERA DLLGLIHTDVC
Sbjct: 95 HIQKLH--SDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVC 148
Score = 39.7 bits (91), Expect(2) = 6e-14
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 243 IFTTSSKRAKYN-LESTYLWHCRLTHISKKHIE 148
I+ +K+ K N L T+LWHCRL HI++KHI+
Sbjct: 65 IYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQ 97
>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 656
Score = 53.9 bits (128), Expect(3) = 3e-13
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
+G L+ + ES+ CES + GK+ + PF + ERA +LLGLIHTDVC
Sbjct: 384 EGYLDQYDYESYTTCESCLKGKMTKSPFTGKGERASELLGLIHTDVC 430
Score = 36.6 bits (83), Expect(3) = 3e-13
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -2
Query: 294 NGVYEIDMHDLEPNVNSIFTTSSKRAKYN--LESTYLWHCRLTHISKKHI 151
+G+Y + + N+N + S+ + K + + TYLWHCRL HI +K I
Sbjct: 333 HGIYVLP----DVNLNPVMHVSNVKRKRDDQVNKTYLWHCRLGHIGEKRI 378
Score = 31.6 bits (70), Expect(3) = 3e-13
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 437 DNCHYAPFIIRGVVSVSCLIDNGFVQTFTD 348
DNC+Y P + ++S+S L +GF+ F +
Sbjct: 285 DNCYYIPKFVSNIISISMLDKHGFLTIFNN 314
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 58.5 bits (140), Expect(2) = 1e-12
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S++ ESF+ CES + GK+ + PF Q+ER +LL L+HTDVC
Sbjct: 934 DGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLVHTDVC 980
Score = 41.6 bits (96), Expect(2) = 1e-12
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -2
Query: 333 FYD*FIYFSVVPCNGVYEIDMHDLEPNVNSIFTTSSKRAKYN-LESTYLWHCRLTHISKK 157
+Y+ YF +G+Y +++ SI+ ++KR N L T++WHCRL HI++K
Sbjct: 872 YYNDIFYFHAPMMSGLYIVNLDGC-----SIYNINAKRQGPNDLNPTFIWHCRLGHINEK 926
Query: 156 HIE 148
+E
Sbjct: 927 RME 929
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 62.8 bits (151), Expect(2) = 9e-12
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q+ERA +LLGL+HTDVC
Sbjct: 402 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLGLVHTDVC 448
Score = 34.7 bits (78), Expect(2) = 9e-12
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 246 SIFTTSSKRAKYN-LESTYLWHCRLTHISKKHIE 148
S++ ++KR N L T++WHCRL HI++K ++
Sbjct: 364 SVYNINAKRQLPNDLNPTFIWHCRLGHINEKRMK 397
>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92973.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 59.7 bits (143), Expect(2) = 9e-12
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q ERA +LLGL+HT VC
Sbjct: 345 DGLLHSFDFESFETCESCLLGKMTKAPFTGQNERASELLGLVHTHVC 391
Score = 37.7 bits (86), Expect(2) = 9e-12
Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -2
Query: 246 SIFTTSSKRAKYN-LESTYLWHCRLTHISKKHIE 148
S++ ++KR + N L T++WHCRL HI++K +E
Sbjct: 307 SVYNINAKRQRPNDLNPTFIWHCRLGHINEKRME 340
>gb|KRY04744.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trichinella patagoniensis]
Length = 173
Score = 56.2 bits (134), Expect(2) = 2e-11
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL S++ ESFD CE + GK+ + PF ERA +LL +IHTDVC
Sbjct: 114 DGLLESLDYESFDTCEPCLMGKMTKTPFSGTMERATNLLEIIHTDVC 160
Score = 40.0 bits (92), Expect(2) = 2e-11
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -2
Query: 267 DLEPNVNSIFTTSSKRAKYNLES-TYLWHCRLTHISKKHIE 148
+LE +V I + ++KR K + +S TYLWHCRL HI K ++
Sbjct: 69 NLERDVTHIHSVNTKRCKVDNDSPTYLWHCRLGHIGVKRMK 109
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 58.2 bits (139), Expect(2) = 9e-11
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = -1
Query: 142 DGLLNSINDESFDKCESFISGKIARKPFPHQTERAYDLLGLIHTDVC 2
DGLL+S + ESF+ CES + GK+ + PF Q+ERA +LLGL++TD C
Sbjct: 207 DGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLGLVYTDEC 253
Score = 35.8 bits (81), Expect(2) = 9e-11
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 246 SIFTTSSKRAKYN-LESTYLWHCRLTHISKKHIE 148
S++ ++KR + N L T++WHC L HI++K +E
Sbjct: 169 SVYNINAKRQRPNDLNPTFIWHCHLGHINEKRME 202