BLASTX nr result

ID: Chrysanthemum22_contig00035616 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00035616
         (467 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_015165908.1| PREDICTED: rRNA-processing protein UTP23 hom...    57   1e-06

>ref|XP_015165908.1| PREDICTED: rRNA-processing protein UTP23 homolog [Solanum
           tuberosum]
          Length = 341

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = +1

Query: 163 RIMDEYRRIFGYKSPFTTICDPKFVNYLEGKKKDPSIELENLLGGTVKLVSTPCI---TK 333
           R +  Y+  FG++ PF   CD  FVNY+ G    P   LEN+LG TVKL  T C+    K
Sbjct: 72  RAVTFYKACFGFREPFKIFCDGTFVNYVVGNHITPDTALENILGATVKLFVTRCVLAELK 131

Query: 334 NVWRS-------NATIQQCNHAVQVHPSLCMKEFVDGYPSCELVVCT 453
           ++ +S       N    +C H  +     C+ E +    S    V T
Sbjct: 132 SLGKSEALNAAKNLCTARCGHERRKSAEDCITEVIGENNSEHFFVAT 178


Top