BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00033685
         (2625 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVH56472.1| CID domain-containing protein [Cynara cardunculus...   845   0.0  
ref|XP_021970843.1| polyadenylation and cleavage factor homolog ...   687   0.0  
ref|XP_021970842.1| polyadenylation and cleavage factor homolog ...   681   0.0  
ref|XP_021970844.1| polyadenylation and cleavage factor homolog ...   676   0.0  
ref|XP_010654041.1| PREDICTED: polyadenylation and cleavage fact...   475   e-148
gb|KVH87854.1| CID domain-containing protein, partial [Cynara ca...   456   e-147
ref|XP_021621312.1| polyadenylation and cleavage factor homolog ...   454   e-140
ref|XP_023745992.1| polyadenylation and cleavage factor homolog ...   427   e-132
gb|POE58102.1| isoform 2 of polyadenylation and cleavage factor ...   433   e-132
ref|XP_023745993.1| polyadenylation and cleavage factor homolog ...   424   e-131
ref|XP_023894769.1| LOW QUALITY PROTEIN: polyadenylation and cle...   426   e-129
gb|OMO82068.1| hypothetical protein CCACVL1_12088 [Corchorus cap...   413   e-124
ref|XP_006430296.1| polyadenylation and cleavage factor homolog ...   399   e-120
ref|XP_008241290.1| PREDICTED: polyadenylation and cleavage fact...   399   e-120
ref|XP_008241291.1| PREDICTED: polyadenylation and cleavage fact...   395   e-118
gb|PNT31065.1| hypothetical protein POPTR_006G115600v3 [Populus ...   392   e-117
gb|PNT31069.1| hypothetical protein POPTR_006G115600v3 [Populus ...   390   e-116
ref|XP_023749740.1| polyadenylation and cleavage factor homolog ...   268   1e-74
emb|CBI30249.3| unnamed protein product, partial [Vitis vinifera]     258   7e-69
ref|XP_022024434.1| polyadenylation and cleavage factor homolog ...   250   2e-67

>gb|KVH56472.1| CID domain-containing protein [Cynara cardunculus var. scolymus]
          Length = 1086

 Score =  845 bits (2183), Expect = 0.0
 Identities = 506/887 (57%), Positives = 572/887 (64%), Gaps = 104/887 (11%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVD AVH GMRHLFGTWKGVFP QSLQ IEK+LGFQS +NGSS G  A+R EP
Sbjct: 179  VFCKAYRQVDSAVHPGMRHLFGTWKGVFPLQSLQFIEKELGFQSATNGSSSGLAASRSEP 238

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANISSIRPR 362
            +PQRP  SIHVNPKYLEAR RLQQS+TAK PTSDTNL+N+PEDTERQDRI ANISS+RPR
Sbjct: 239  QPQRPXRSIHVNPKYLEARQRLQQSSTAKGPTSDTNLMNSPEDTERQDRITANISSVRPR 298

Query: 363  ADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSD------AGFRKSSATVGEQGFNNS 524
            ADPR+KNIQQ QR+VE   + +ND APY+D DY SD      A F KSS  V EQGF+NS
Sbjct: 299  ADPRLKNIQQAQRDVESTCLRENDGAPYSDFDYCSDVLIPSEASFGKSSEIVAEQGFDNS 358

Query: 525  WYGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNGSWKN 698
            WYG+G+N+TE ISGQRNGFD+KHG   LS  R+ANADVKLQP NNIA KRG E N SWKN
Sbjct: 359  WYGAGSNTTETISGQRNGFDVKHGFPNLSASRTANADVKLQPMNNIASKRGGEANRSWKN 418

Query: 699  SEEEEYTWDGMNSRVANPGKSNSSSKRDPRSQPKLEKMGF----QKLQGIKD-------- 842
            SEEEEY WD MNSR+A PGKS SSSKRDPR+ P  EK+GF    QK QGI++        
Sbjct: 419  SEEEEYMWDDMNSRLAIPGKSGSSSKRDPRAHPMNEKLGFENRLQKPQGIQNIGLRVDRE 478

Query: 843  --TNPLSTDQNNGGVF---------XXXXXXXXXXXXXXFNGVATSVNSLSKTSLESPIR 989
              ++ LS +Q +G VF                       F GV+TSVNSLSKTSL+  + 
Sbjct: 479  ASSDSLSANQKDGAVFRQPVQSLSSLRNLLDHEEVHSTSFGGVSTSVNSLSKTSLQPQMG 538

Query: 990  SSHVDGPGLMFTPSVVRGQQRHTNGVAXXXXXXXXXXXXXXXXXXTYNASKIMHDIAAQD 1169
            +SHV    L F P+ + G QRHT   A                  TY++SKI+H+++ +D
Sbjct: 539  ASHVGTQPLGFPPNAITG-QRHTLAAASPSGQAPTHQRPPSPSFPTYHSSKILHNLSGRD 597

Query: 1170 --------GPDSKPAQSRGQK--GIS------SIKGIPQILRMGNSQKPQIRN------- 1280
                    G D KPA+SRGQK  G+S      S +GI QI  M N QK QIRN       
Sbjct: 598  PPTTRQLVGADGKPARSRGQKNTGLSSQSTQDSFQGIXQISHMXNPQKXQIRNLQTSSXQ 657

Query: 1281 --SHSVKH---------EPFQSPTTKMSVDANQLVGSSMDQLKSSTADIPGPSTPGNMLA 1427
               HS KH         EP QSP  K+ VDAN L     D  KS  A+I GPST  N+LA
Sbjct: 658  LPLHSKKHAPLHPGTXSEPSQSPXIKI-VDANLL-----DHSKSPVABIXGPSTTENLLA 711

Query: 1428 AVSSILGKK--------------SNXXXXXXXXXXXTQFTSLG-----SHMSPSSHDSIL 1550
            AVSSI G K              SN           TQFTS G     SH SPSS DSIL
Sbjct: 712  AVSSIFGNKSVAGSILQMNSQTESNSGPPLPSXPPPTQFTSSGPSVMSSHPSPSSRDSIL 771

Query: 1551 L----------SASTLQREADKALVPPVSIILSTLVAKGLISASKAXXXXXXXXXXXXXX 1700
                       S ST       A+  PVS +LSTLVAKGLI ASKA              
Sbjct: 772  PLPPGPPSLVGSTSTQTSSMATAVSNPVSNLLSTLVAKGLIYASKA-DTPDASPTRSQSP 830

Query: 1701 KTDPPASLAVPAVIPKKTKTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDV 1880
            K D P S  VPAV+     T   N+E S+S+  VK T    Q T  DI S+IGFEFKPDV
Sbjct: 831  KIDTPPSHTVPAVVSSVLSTSSINNESSLSN--VKST----QSTTVDIKSLIGFEFKPDV 884

Query: 1881 IRRSHPAVISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVN 2060
            IRRSHPAVIS+LI DLPHQC ICGLRFKLQERF++H+EWHTLK PE  TP+KVSRRWF N
Sbjct: 885  IRRSHPAVISELI-DLPHQCHICGLRFKLQERFERHLEWHTLKNPEFNTPNKVSRRWFRN 943

Query: 2061 SDDWAKEKPELQSGD---LPT----GPVEIDGEQMVAADENQCVCILCGELFDDFYYQKM 2219
            S DW  EKPELQS D   LP       VEIDGEQMVAADE+QCVCILCGELFDDFY Q++
Sbjct: 944  SYDWGTEKPELQSSDHNILPVDSLEAAVEIDGEQMVAADESQCVCILCGELFDDFYSQEL 1003

Query: 2220 DKWMFRRAVHLSINDGAT---QGPIVHAHCISENSISDLGLSNDVKR 2351
            +KWMFRRAVHL+I DG      GPIVHAHCIS+NS+SDL LSNDVKR
Sbjct: 1004 BKWMFRRAVHLNIKDGEAGNIGGPIVHAHCISKNSLSDLELSNDVKR 1050


>ref|XP_021970843.1| polyadenylation and cleavage factor homolog 4-like isoform X2
            [Helianthus annuus]
          Length = 843

 Score =  687 bits (1772), Expect = 0.0
 Identities = 419/804 (52%), Positives = 493/804 (61%), Gaps = 20/804 (2%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDPAVHSGMRHLFGTWKGVFP QSLQ IEK+LGFQS +NGSS    +   +P
Sbjct: 167  VFCKAYRQVDPAVHSGMRHLFGTWKGVFPPQSLQLIEKELGFQSVANGSS----SLEPDP 222

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANISSIRPR 362
            + QRPA SIHVNP+YLEA+ RLQQS+TAK PTSDTNL+NT E+T RQ R +ANI+S    
Sbjct: 223  QSQRPARSIHVNPEYLEAQQRLQQSSTAKGPTSDTNLINTHENTNRQGRTSANITS---- 278

Query: 363  ADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFNNSWYGSGN 542
             +PR+KNI Q QR V G+ I +N+ APYND D         SS  V EQGF NS YG  +
Sbjct: 279  -NPRLKNIPQAQRNV-GSVIRENERAPYNDFD---------SSEIVNEQGFGNSLYGPAS 327

Query: 543  NSTEPISGQRNGFDMKHGILSVPRSANADVKLQPTNNIARKRGSEVNGSWKNSEEEEYTW 722
            NSTE ISG RNGFDM        RSANAD KLQPTNNI  KR  E+N SWK+SEEEEY W
Sbjct: 328  NSTETISGHRNGFDM--------RSANADGKLQPTNNIT-KRNGELNRSWKHSEEEEYMW 378

Query: 723  DGMNSRVANPGKSNSSSKRDPRSQPKLEKMGF----QKLQGIKDT-----NPLSTDQNNG 875
            DGMNSR+ N  KS+ +SKRDPRS P  EK+GF    QK QGI+DT        STD  + 
Sbjct: 379  DGMNSRLPNSVKSSGNSKRDPRSHPGPEKLGFQNHLQKSQGIQDTGSRVDREASTDSPS- 437

Query: 876  GVFXXXXXXXXXXXXXXFNGVATSVNSLSKTSLESPIRSSHVDGPGLM-FTPSVVRGQQR 1052
                             FNGV+TS+NS+ K+SL+  I SSHV   GL+ F PS V+  QR
Sbjct: 438  ---------VARPQGPAFNGVSTSINSILKSSLQPQIGSSHVGASGLLGFPPSAVK--QR 486

Query: 1053 HTNGVAXXXXXXXXXXXXXXXXXXTYNASKIMHDIAAQDGPDSKPAQSRGQKGISSIKGI 1232
            HT G A                  T+ + +++++   QDG   KPA SRG+         
Sbjct: 487  HTPGAA-----SPLLHHPPTPSFPTHTSGRLLNNFTGQDG---KPALSRGEINTGLSNQS 538

Query: 1233 PQ-ILRMGNSQKPQIR-NSHSVKHEPFQSPTTKMSVDANQLVGSSMDQLKSST----ADI 1394
            PQ     G+SQKPQ++   ++ KH P +SP TK S DAN LVGSS D ++S T    A++
Sbjct: 539  PQDSFHTGDSQKPQMQLPLNTKKHGPVRSPATKTSSDANTLVGSSSDHIRSPTLQKEAEL 598

Query: 1395 PGPSTPGNMLAAVSSILGKKSNXXXXXXXXXXXTQFTSLGSHMSPSSHDSILLSASTLQR 1574
            P  S+  + L A   I   K++                     SPS          TL+R
Sbjct: 599  PPVSSLLSTLVAKGLISASKAD---------------------SPSD--------QTLKR 629

Query: 1575 EADKALVPPVSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPPASLAVPAVIPKKT 1754
             AD                                       K D PA L     +P+KT
Sbjct: 630  NAD--------------------------------------PKIDTPAVL-----VPEKT 646

Query: 1755 KTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDL-IDDLP 1931
              PL  DEPS     VK +V       ED+ SVIGFEFKPDVIRRSHPAVIS L ID+LP
Sbjct: 647  ILPLPKDEPSA----VKGSVDT-----EDVKSVIGFEFKPDVIRRSHPAVISQLIIDELP 697

Query: 1932 HQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDLP 2111
            HQC ICGLRFKL ERFDKHIEWHTL  PEL TP+K SRRWF  SDDW KEKPE++S D  
Sbjct: 698  HQCHICGLRFKLVERFDKHIEWHTLNNPELNTPNKASRRWFTKSDDWVKEKPEVRSSDET 757

Query: 2112 TGPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSIND---GATQGP 2282
            TGPV+IDGEQMV ADE+QC C+LCGE+FDDFY+Q+M KWMFRRAV+L+  D   G T GP
Sbjct: 758  TGPVQIDGEQMVVADESQCACVLCGEVFDDFYWQEMGKWMFRRAVYLNTKDENIGDTYGP 817

Query: 2283 IVHAHCISENSISDLGLSNDVKRE 2354
            IVHAHCIS NS+SDLGLSNDV +E
Sbjct: 818  IVHAHCISGNSLSDLGLSNDVNKE 841


>ref|XP_021970842.1| polyadenylation and cleavage factor homolog 4-like isoform X1
            [Helianthus annuus]
 gb|OTG23483.1| putative zinc finger, C2H2, ENTH/VHS [Helianthus annuus]
          Length = 846

 Score =  681 bits (1758), Expect = 0.0
 Identities = 419/807 (51%), Positives = 493/807 (61%), Gaps = 23/807 (2%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDPAVHSGMRHLFGTWKGVFP QSLQ IEK+LGFQS +NGSS    +   +P
Sbjct: 167  VFCKAYRQVDPAVHSGMRHLFGTWKGVFPPQSLQLIEKELGFQSVANGSS----SLEPDP 222

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANISSIRPR 362
            + QRPA SIHVNP+YLEA+ RLQQS+TAK PTSDTNL+NT E+T RQ R +ANI+S    
Sbjct: 223  QSQRPARSIHVNPEYLEAQQRLQQSSTAKGPTSDTNLINTHENTNRQGRTSANITS---- 278

Query: 363  ADPRIK---NIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFNNSWYG 533
             +PR+K   NI Q QR V G+ I +N+ APYND D         SS  V EQGF NS YG
Sbjct: 279  -NPRLKMLQNIPQAQRNV-GSVIRENERAPYNDFD---------SSEIVNEQGFGNSLYG 327

Query: 534  SGNNSTEPISGQRNGFDMKHGILSVPRSANADVKLQPTNNIARKRGSEVNGSWKNSEEEE 713
              +NSTE ISG RNGFDM        RSANAD KLQPTNNI  KR  E+N SWK+SEEEE
Sbjct: 328  PASNSTETISGHRNGFDM--------RSANADGKLQPTNNIT-KRNGELNRSWKHSEEEE 378

Query: 714  YTWDGMNSRVANPGKSNSSSKRDPRSQPKLEKMGF----QKLQGIKDT-----NPLSTDQ 866
            Y WDGMNSR+ N  KS+ +SKRDPRS P  EK+GF    QK QGI+DT        STD 
Sbjct: 379  YMWDGMNSRLPNSVKSSGNSKRDPRSHPGPEKLGFQNHLQKSQGIQDTGSRVDREASTDS 438

Query: 867  NNGGVFXXXXXXXXXXXXXXFNGVATSVNSLSKTSLESPIRSSHVDGPGLM-FTPSVVRG 1043
             +                  FNGV+TS+NS+ K+SL+  I SSHV   GL+ F PS V+ 
Sbjct: 439  PS----------VARPQGPAFNGVSTSINSILKSSLQPQIGSSHVGASGLLGFPPSAVK- 487

Query: 1044 QQRHTNGVAXXXXXXXXXXXXXXXXXXTYNASKIMHDIAAQDGPDSKPAQSRGQKGISSI 1223
             QRHT G A                  T+ + +++++   QDG   KPA SRG+      
Sbjct: 488  -QRHTPGAA-----SPLLHHPPTPSFPTHTSGRLLNNFTGQDG---KPALSRGEINTGLS 538

Query: 1224 KGIPQ-ILRMGNSQKPQIR-NSHSVKHEPFQSPTTKMSVDANQLVGSSMDQLKSST---- 1385
               PQ     G+SQKPQ++   ++ KH P +SP TK S DAN LVGSS D ++S T    
Sbjct: 539  NQSPQDSFHTGDSQKPQMQLPLNTKKHGPVRSPATKTSSDANTLVGSSSDHIRSPTLQKE 598

Query: 1386 ADIPGPSTPGNMLAAVSSILGKKSNXXXXXXXXXXXTQFTSLGSHMSPSSHDSILLSAST 1565
            A++P  S+  + L A   I   K++                     SPS          T
Sbjct: 599  AELPPVSSLLSTLVAKGLISASKAD---------------------SPSD--------QT 629

Query: 1566 LQREADKALVPPVSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPPASLAVPAVIP 1745
            L+R AD                                       K D PA L     +P
Sbjct: 630  LKRNAD--------------------------------------PKIDTPAVL-----VP 646

Query: 1746 KKTKTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDL-ID 1922
            +KT  PL  DEPS     VK +V       ED+ SVIGFEFKPDVIRRSHPAVIS L ID
Sbjct: 647  EKTILPLPKDEPSA----VKGSVDT-----EDVKSVIGFEFKPDVIRRSHPAVISQLIID 697

Query: 1923 DLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSG 2102
            +LPHQC ICGLRFKL ERFDKHIEWHTL  PEL TP+K SRRWF  SDDW KEKPE++S 
Sbjct: 698  ELPHQCHICGLRFKLVERFDKHIEWHTLNNPELNTPNKASRRWFTKSDDWVKEKPEVRSS 757

Query: 2103 DLPTGPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSIND---GAT 2273
            D  TGPV+IDGEQMV ADE+QC C+LCGE+FDDFY+Q+M KWMFRRAV+L+  D   G T
Sbjct: 758  DETTGPVQIDGEQMVVADESQCACVLCGEVFDDFYWQEMGKWMFRRAVYLNTKDENIGDT 817

Query: 2274 QGPIVHAHCISENSISDLGLSNDVKRE 2354
             GPIVHAHCIS NS+SDLGLSNDV +E
Sbjct: 818  YGPIVHAHCISGNSLSDLGLSNDVNKE 844


>ref|XP_021970844.1| polyadenylation and cleavage factor homolog 4-like isoform X3
            [Helianthus annuus]
          Length = 839

 Score =  676 bits (1743), Expect = 0.0
 Identities = 416/804 (51%), Positives = 490/804 (60%), Gaps = 20/804 (2%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDPAVHSGMRHLFGTWKGVFP QSLQ IEK+LGFQS +NGSS    +   +P
Sbjct: 167  VFCKAYRQVDPAVHSGMRHLFGTWKGVFPPQSLQLIEKELGFQSVANGSS----SLEPDP 222

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANISSIRPR 362
            + QRPA SIHVNP+YLEA+ RLQQS+TAK PTSDTNL+NT E+T RQ R +ANI+S    
Sbjct: 223  QSQRPARSIHVNPEYLEAQQRLQQSSTAKGPTSDTNLINTHENTNRQGRTSANITS---- 278

Query: 363  ADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFNNSWYGSGN 542
             +PR+K     QR V G+ I +N+ APYND D         SS  V EQGF NS YG  +
Sbjct: 279  -NPRLK----AQRNV-GSVIRENERAPYNDFD---------SSEIVNEQGFGNSLYGPAS 323

Query: 543  NSTEPISGQRNGFDMKHGILSVPRSANADVKLQPTNNIARKRGSEVNGSWKNSEEEEYTW 722
            NSTE ISG RNGFDM        RSANAD KLQPTNNI  KR  E+N SWK+SEEEEY W
Sbjct: 324  NSTETISGHRNGFDM--------RSANADGKLQPTNNIT-KRNGELNRSWKHSEEEEYMW 374

Query: 723  DGMNSRVANPGKSNSSSKRDPRSQPKLEKMGF----QKLQGIKDT-----NPLSTDQNNG 875
            DGMNSR+ N  KS+ +SKRDPRS P  EK+GF    QK QGI+DT        STD  + 
Sbjct: 375  DGMNSRLPNSVKSSGNSKRDPRSHPGPEKLGFQNHLQKSQGIQDTGSRVDREASTDSPS- 433

Query: 876  GVFXXXXXXXXXXXXXXFNGVATSVNSLSKTSLESPIRSSHVDGPGLM-FTPSVVRGQQR 1052
                             FNGV+TS+NS+ K+SL+  I SSHV   GL+ F PS V+  QR
Sbjct: 434  ---------VARPQGPAFNGVSTSINSILKSSLQPQIGSSHVGASGLLGFPPSAVK--QR 482

Query: 1053 HTNGVAXXXXXXXXXXXXXXXXXXTYNASKIMHDIAAQDGPDSKPAQSRGQKGISSIKGI 1232
            HT G A                  T+ + +++++   QDG   KPA SRG+         
Sbjct: 483  HTPGAA-----SPLLHHPPTPSFPTHTSGRLLNNFTGQDG---KPALSRGEINTGLSNQS 534

Query: 1233 PQ-ILRMGNSQKPQIR-NSHSVKHEPFQSPTTKMSVDANQLVGSSMDQLKSST----ADI 1394
            PQ     G+SQKPQ++   ++ KH P +SP TK S DAN LVGSS D ++S T    A++
Sbjct: 535  PQDSFHTGDSQKPQMQLPLNTKKHGPVRSPATKTSSDANTLVGSSSDHIRSPTLQKEAEL 594

Query: 1395 PGPSTPGNMLAAVSSILGKKSNXXXXXXXXXXXTQFTSLGSHMSPSSHDSILLSASTLQR 1574
            P  S+  + L A   I   K++                     SPS          TL+R
Sbjct: 595  PPVSSLLSTLVAKGLISASKAD---------------------SPSD--------QTLKR 625

Query: 1575 EADKALVPPVSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPPASLAVPAVIPKKT 1754
             AD                                       K D PA L     +P+KT
Sbjct: 626  NAD--------------------------------------PKIDTPAVL-----VPEKT 642

Query: 1755 KTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDL-IDDLP 1931
              PL  DEPS     VK +V       ED+ SVIGFEFKPDVIRRSHPAVIS L ID+LP
Sbjct: 643  ILPLPKDEPSA----VKGSVDT-----EDVKSVIGFEFKPDVIRRSHPAVISQLIIDELP 693

Query: 1932 HQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDLP 2111
            HQC ICGLRFKL ERFDKHIEWHTL  PEL TP+K SRRWF  SDDW KEKPE++S D  
Sbjct: 694  HQCHICGLRFKLVERFDKHIEWHTLNNPELNTPNKASRRWFTKSDDWVKEKPEVRSSDET 753

Query: 2112 TGPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSIND---GATQGP 2282
            TGPV+IDGEQMV ADE+QC C+LCGE+FDDFY+Q+M KWMFRRAV+L+  D   G T GP
Sbjct: 754  TGPVQIDGEQMVVADESQCACVLCGEVFDDFYWQEMGKWMFRRAVYLNTKDENIGDTYGP 813

Query: 2283 IVHAHCISENSISDLGLSNDVKRE 2354
            IVHAHCIS NS+SDLGLSNDV +E
Sbjct: 814  IVHAHCISGNSLSDLGLSNDVNKE 837


>ref|XP_010654041.1| PREDICTED: polyadenylation and cleavage factor homolog 4 [Vitis
            vinifera]
          Length = 1086

 Score =  475 bits (1222), Expect = e-148
 Identities = 341/944 (36%), Positives = 452/944 (47%), Gaps = 159/944 (16%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDP++H GMRHLFGTWKGVFP   LQ IEK+LGF    NGSS G   +R + 
Sbjct: 156  VFCKAYRQVDPSIHPGMRHLFGTWKGVFPLAPLQMIEKELGFPPAINGSSPGIATSRSDS 215

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDT--NLLNTPEDTERQDRIAANISSIR 356
            + QRP  SIHVNPKYLEAR RLQQS+  K   +D    ++N+ ED +R DR  A I++ R
Sbjct: 216  QSQRPPHSIHVNPKYLEARQRLQQSSRTKGAANDVTGTMVNSTEDADRLDR-TAGINAGR 274

Query: 357  PRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVG---EQGFNNSW 527
            P  D   K+IQ   RE  G  +     APY D +YG+D   R     +G   EQG +  W
Sbjct: 275  PWDDLPAKSIQHSHREAIGELVEKKIGAPYGDYEYGTDLS-RNPGLGIGRPSEQGHDKPW 333

Query: 528  YGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNGSWKNS 701
            Y +G    E  S QRNGFD+KHG      PRSANAD  LQPT +   +  S ++ SWKNS
Sbjct: 334  YKAGGRVVETFSSQRNGFDIKHGFPNYPAPRSANADAHLQPTQSTVNRSNSGMSRSWKNS 393

Query: 702  EEEEYTWDGMNSRVANPGKSNSSSKRDPRSQPKLEKMGF----QKLQGIKD--------- 842
            EEEEY WD MNS++     +N  SK+D  +    EK+ F    QK Q I D         
Sbjct: 394  EEEEYMWDDMNSKMTEHSAAN-HSKKDRWTPDDSEKLDFENQLQKPQSIYDVGSSVDRET 452

Query: 843  -TNPLSTDQNNGGVF-----------------------XXXXXXXXXXXXXXFNGVATSV 950
             T+ +S++Q   G F                                      +G++TS 
Sbjct: 453  STDSMSSEQREQGAFGHRMSSLWPLQEPHSTDGLKHSGTSTLILGHSEGYPTVSGLSTSA 512

Query: 951  -NSLSKTSLESPIRSSHVDGPGLMFTPSVVRGQQRHTNGVAXXXXXXXXXXXXXXXXXXT 1127
             +SL++T L   + SSH    G  F  +   G    T G                     
Sbjct: 513  SSSLARTGLRPLMGSSHAGASGFGFLTNASSGS---TTGTVGQQRLQSVGAASPSGQSPM 569

Query: 1128 YNASKI-MHDIAAQDGPDSKPAQSRGQKGISSIK-----GIPQIL---RMGNSQKPQIRN 1280
            +    + +H +     PD K +Q  GQ  I S K      +P+++   ++G+ QK    N
Sbjct: 570  HQPDHLPVHSLPL---PDIKASQFSGQFNIGSHKQFTLDALPKLIQKAQLGDLQKLLPHN 626

Query: 1281 SHSVK----------HEPFQS--------------------PTTKMSVDANQLVGSSMDQ 1370
              S+           H PF                      P T +    + +    ++ 
Sbjct: 627  LQSLSPAVPSVPIRHHAPFSPQLQPDPLQPEPSGQAQKTSLPQTSIFEAPSTIENPVLEH 686

Query: 1371 LKSSTADIPGPSTPGNMLAAV--SSILGKKSNXXXXXXXXXXXT---------------- 1496
                 A+  G  +  N+LAAV  S IL   S            T                
Sbjct: 687  SNYPAAESTGKLSTSNLLAAVMKSGILSNSSVSGSIPKTSFQDTGAVLQSVIQPPLPSGP 746

Query: 1497 ---QFTSLG-----SHMSPSSHDSILLSASTL-QREADKALVP----------------- 1598
               QFTS G     + +S  SHDS   SAS L QR+ ++  +P                 
Sbjct: 747  PPAQFTSSGPRVATASLSGPSHDS--KSASNLSQRKVERPPLPPGPPPPSSLAGSGLPQS 804

Query: 1599 ---------PVSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTD----------PPAS 1721
                     P++ +LS+LVAKGLISASK               +            P +S
Sbjct: 805  SNVTSNASNPIANLLSSLVAKGLISASKTESSTHVPTQMPARLQNQSAGISTISPIPVSS 864

Query: 1722 LAVPAVIPKKTKTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPA 1901
            ++V + +P  +    T D  S +    K +V V Q T  ++ ++IGFEFK D+IR SHP+
Sbjct: 865  VSVASSVPLSS----TMDAVSHTEPAAKASVAVTQSTSVEVKNLIGFEFKSDIIRESHPS 920

Query: 1902 VISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKE 2081
            VIS+L DDLPHQCSICGLR KL+ER D+H+EWH LK  E    ++ SR WFVNS +W  E
Sbjct: 921  VISELFDDLPHQCSICGLRLKLRERLDRHLEWHALKKSEPNGLNRASRSWFVNSGEWIAE 980

Query: 2082 KPELQSGDLPTGPVEIDG------EQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRA 2243
                 +    T P    G      EQMV ADENQCVC+LCGE+F+DFY Q+MDKWMFR A
Sbjct: 981  VAGFPTEAKSTSPAGESGKPLETSEQMVPADENQCVCVLCGEVFEDFYSQEMDKWMFRGA 1040

Query: 2244 VHLSINDGA------TQGPIVHAHCISENSISDLGLSNDVKREE 2357
            V +++           QGPIVHA CI+E+S+ DLGL+ D+K E+
Sbjct: 1041 VKMTVPSQGGELGTKNQGPIVHADCITESSVHDLGLACDIKVEK 1084


>gb|KVH87854.1| CID domain-containing protein, partial [Cynara cardunculus var.
            scolymus]
          Length = 624

 Score =  456 bits (1174), Expect = e-147
 Identities = 253/442 (57%), Positives = 295/442 (66%), Gaps = 51/442 (11%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVD AVH GMRHLFGTWKGVFP QSLQ IEK+LGFQS +NGSS G  A+R EP
Sbjct: 179  VFCKAYRQVDSAVHPGMRHLFGTWKGVFPLQSLQLIEKELGFQSATNGSSSGLAASRSEP 238

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANISSIRPR 362
            +PQRP  SIHVNPKYLEAR RLQQS+TAK PTSDTNL+N+PED+ERQDRI AN SS+RPR
Sbjct: 239  QPQRPVRSIHVNPKYLEARQRLQQSSTAKGPTSDTNLINSPEDSERQDRITANTSSVRPR 298

Query: 363  ADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSD------AGFRKSSATVGEQGFNNS 524
            ADPR+KNIQQ QR+VE A I +ND APY+D DY SD      A F KSS  V EQGF++S
Sbjct: 299  ADPRLKNIQQAQRDVESACIRENDGAPYSDFDYCSDVLIPSEASFGKSSEIVAEQGFDSS 358

Query: 525  WYGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNGSWKN 698
            WYG+G+N+TE ISGQRNGFD+KHG   LS  RSANADVKLQP NNIA KRG EVN SWKN
Sbjct: 359  WYGAGSNTTETISGQRNGFDVKHGFSNLSASRSANADVKLQPVNNIASKRGGEVNRSWKN 418

Query: 699  SEEEEYTWDGMNSRVANPGKSNSSSKRDPRSQPKLEK--------------------MGF 818
            SEEEEY WD MNSR+A PGKS SSSKRDPR+    EK                    +GF
Sbjct: 419  SEEEEYMWDDMNSRLATPGKSGSSSKRDPRAHSMNEKLWCVHLNKEYDMDHATWFFILGF 478

Query: 819  ----QKLQGIKD----------TNPLSTDQNNGGVF---------XXXXXXXXXXXXXXF 929
                QK QGI++          ++ LS +Q +G VF                       F
Sbjct: 479  ENRLQKPQGIQNIGSKVDREASSDSLSANQKDGAVFRQPVQSLGSRRNLLDHAEVHSTSF 538

Query: 930  NGVATSVNSLSKTSLESPIRSSHVDGPGLMFTPSVVRGQQRHTNGVAXXXXXXXXXXXXX 1109
            +GV+TSVNSLSKTSL+  I +SH+    L F P+ + G QRHT G A             
Sbjct: 539  SGVSTSVNSLSKTSLQPQIGASHIGTQPLGFPPNAITG-QRHTLGAASSSGQAPTHQRPP 597

Query: 1110 XXXXXTYNASKIMHDIAAQDGP 1175
                 TY++SKI+H+++ +D P
Sbjct: 598  SPLLPTYHSSKILHNLSGRDPP 619


>ref|XP_021621312.1| polyadenylation and cleavage factor homolog 4 [Manihot esculenta]
 gb|OAY42850.1| hypothetical protein MANES_08G021000 [Manihot esculenta]
          Length = 1082

 Score =  454 bits (1169), Expect = e-140
 Identities = 335/936 (35%), Positives = 454/936 (48%), Gaps = 151/936 (16%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDP VHS MRHLFGTWKGVFP QSLQAIEK+LGF S  NGSS G   +R + 
Sbjct: 162  VFCKAYRQVDPPVHSSMRHLFGTWKGVFPPQSLQAIEKELGFASAVNGSSSGDATSRPDA 221

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSD--TNLLNTPEDTERQDRIAANISSIR 356
            + +RP  SIHVNPKYLE + RLQQS  AKA  +D   ++ N+ EDTER +R AA + + R
Sbjct: 222  QSRRPQHSIHVNPKYLEIQ-RLQQSGRAKAAANDLSVSISNSTEDTERPER-AAGLGAGR 279

Query: 357  PRADPRIK--NIQQIQREVEGASIHDNDSAPYNDCDY------GSDAGFRKSSATVGEQG 512
               DP +K  N Q+  RE    ++       Y D +Y       SD G  ++S  + EQG
Sbjct: 280  SWVDPSVKMQNFQRSHRETPTEAVQQKIGTIYGDLEYSSDMSRNSDVGIGRTSGRIAEQG 339

Query: 513  FNNSWYGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNG 686
                WYG+GN+ TE I GQRNGF MKHG    S  +SAN D  LQPT  IA K  + ++ 
Sbjct: 340  SEKPWYGAGNSVTETIPGQRNGFSMKHGFPNFSTSKSANVDF-LQPTQGIASKSSNAMSA 398

Query: 687  SWKNSEEEEYTWDGMNSRVANPGKSNSS--SKRDPRSQPKLEKMGF-------------- 818
            SWKNSEEEE+ WD M+SR+++P   N S  S++D  +    EK+ F              
Sbjct: 399  SWKNSEEEEFMWD-MHSRLSDPNAVNPSNNSRKDRWTPDDSEKLEFDDQLRKPQSAHEIL 457

Query: 819  QKLQGIKDTNPLSTDQNNGGVF------XXXXXXXXXXXXXXFNGVAT----SVNSLSKT 968
             K       + LST+Q     F                     +G +T         S T
Sbjct: 458  SKFDRETSADSLSTEQKEQVPFGHHLSSPWRLKESHPTDGPIISGSSTVNTGQTEGYSAT 517

Query: 969  SLESPIRSSH-------------VDGPGLMFTPSVVRGQQR-HTNGVAXXXXXXXXXXXX 1106
                P+++S              V G GL    S+  GQQR  T G A            
Sbjct: 518  LGRLPMKASSSVPRMPIRPHIVGVSGSGLSAKTSLGSGQQRFQTLGAASLSGQSPMLQRP 577

Query: 1107 XXXXXXTYNASKIMHDIAAQD--GPDSKPAQSRGQKGISSIK------------------ 1226
                   +     + +   QD   PD K  Q  G    S++K                  
Sbjct: 578  PSPSFPAHYPHLQLQNSIEQDLSHPDYKAHQLSGNLLPSNVKLSNLQKLQAEDLPTSSPS 637

Query: 1227 ---------GIPQILRMGNSQ---KPQIRNSHSVKHEPFQSPTTKMSVDANQLVGSSMDQ 1370
                      I Q  ++G+ Q     Q++ +H        +P+T  S        S+ D 
Sbjct: 638  LTSQRSRQYSISQPRQVGSKQPESSGQVQRTHLNLVSKVGTPSTSGS--------STPDH 689

Query: 1371 LKSSTADIPGPSTPGNMLAAV--SSILGKKS------------------NXXXXXXXXXX 1490
                +A+  G S+  ++LAAV  S IL   S                  +          
Sbjct: 690  STPLSAETSGQSSTSSLLAAVMNSGILSNISTVGLANKNFQDVGKNPTESSIKPPLPSGP 749

Query: 1491 XTQFTSLGSHM----SPSSHDSILLSASTLQREADKALVP-------------------P 1601
              Q TS G+ +    +P SHD   ++++  +R+ ++  +P                   P
Sbjct: 750  LPQITSSGTRVASASAPLSHDVTSVTSNVSERKEEQPPLPPGPPPSSLQTSSAANKVVNP 809

Query: 1602 VSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTD--------PPASLAVPAVIPKKTK 1757
            +S +LS+LVAKGLISASK+               T           +SL V + +P  + 
Sbjct: 810  ISNLLSSLVAKGLISASKSETSSPSPSQMPTQSDTQNLANSSNTSTSSLPVSSAVPDAS- 868

Query: 1758 TPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLPHQ 1937
               T DE  +S    ++ V + Q T  +I  +IG EFK DVIR  HP VIS L DDLPH+
Sbjct: 869  ---TTDEVLLSKPDAEKPVMLSQPTSAEIKGLIGLEFKSDVIRELHPPVISSLFDDLPHR 925

Query: 1938 CSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSG----- 2102
            CSICGLR KL+ER D+H+EWHTL+ PE    +KV+RRW+  S DW   K EL  G     
Sbjct: 926  CSICGLRLKLKERLDRHLEWHTLRKPEPDDMNKVTRRWYAGSGDWVTGKAELPFGIEASV 985

Query: 2103 --DLPTGPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSI--NDGA 2270
              D   G ++ D   MV+ADE+QCVC+LCGELF+D+Y  +M KWMF+ AVHL++   DG 
Sbjct: 986  FTDELAGTMDED-VPMVSADEDQCVCVLCGELFEDYYSHQMKKWMFKEAVHLTLTSRDGG 1044

Query: 2271 T-------QGPIVHAHCISENSISDLGLSNDVKREE 2357
                    +GPIVH +CISE+S+ DLGL++ ++ ++
Sbjct: 1045 IGTTSENGEGPIVHINCISESSVHDLGLTSGIEMDK 1080


>ref|XP_023745992.1| polyadenylation and cleavage factor homolog 4-like isoform X1
            [Lactuca sativa]
          Length = 871

 Score =  427 bits (1099), Expect = e-132
 Identities = 314/832 (37%), Positives = 424/832 (50%), Gaps = 47/832 (5%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNG------SSLGST 164
            VFCKAYRQVD A+HSGMRHLFGTWKGVFP QSLQ+IEK+LGF +  NG      SS G T
Sbjct: 166  VFCKAYRQVDSALHSGMRHLFGTWKGVFPPQSLQSIEKELGFSTVGNGNGNGNVSSSGLT 225

Query: 165  AARFEPEPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANI 344
             +R E +PQRPA SIHVNPKYLEAR +LQQSN  K   SD +                  
Sbjct: 226  TSRPESQPQRPARSIHVNPKYLEARQKLQQSNRPKVAASDIS------------------ 267

Query: 345  SSIRPRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFNNS 524
                 RADPR+K + Q QR+ E    ++N     +D    S+  F KS+  VGEQG   +
Sbjct: 268  ---TTRADPRLK-LHQAQRDPESDLTNENYEFG-SDISSPSEGSFGKSNGRVGEQGLEKT 322

Query: 525  WYGSGNNSTEPISG-QRNGFDMKHGILSVPRSANADVKLQPTNNIARKRGSEVNGSWKNS 701
            WYGS +N+T+ IS  +RNG  +     S+ +S+  DVK QP NN+ +  G EV+ SWKNS
Sbjct: 323  WYGSVSNTTDTISRLERNGHTLSSN-YSLHKSSIPDVKSQPINNLIKGSG-EVSRSWKNS 380

Query: 702  EEEEYTWDGMNSRVANP-GKSNSSSKRDPRSQPKLEKMGF----QKLQGI--KDTNP--- 851
            EEEEY WD ++SR  NP   S++SSKRDPR     ++ GF    QK Q +  K+++P   
Sbjct: 381  EEEEYLWDDVSSRTVNPILTSSNSSKRDPRLYFDPDRPGFDNRLQKSQRMHEKESSPDLP 440

Query: 852  ------------------LSTDQNN--GGVFXXXXXXXXXXXXXXFNGVATSVNSLSKTS 971
                               STD+N+  G                    V+TS++SLS+ S
Sbjct: 441  SAEQRIPLPSTSLRAKGSFSTDENSFVGASRNLLHGSKVFPSSSSGVSVSTSLDSLSRIS 500

Query: 972  LESPIRSSHVDGPGLMFTPSVVRGQQRHTNGVAXXXXXXXXXXXXXXXXXXTYNASKIMH 1151
            L+S ++++   G        + +  Q+                            SK+ +
Sbjct: 501  LQS-LKAARSQG-------QISQDSQK----------------------------SKLQN 524

Query: 1152 DIAAQDGPDSKPAQSRGQKGISSIKGIPQ---ILRMGNSQKPQIRNSHSVKHEPFQSPTT 1322
                +  P   P Q    +     +  PQ    L +   QKP + +       P  S T+
Sbjct: 525  LHPMKRTPFPPPHQEPVSEPSVQFQPQPQPPKPLPVPRQQKPVVADI------PGLSSTS 578

Query: 1323 KMSVDANQLVG-SSMDQLKSSTADIPGPSTPGNMLAAVSSILGKKSNXXXXXXXXXXXTQ 1499
             +    + + G  +  Q  SS+  IP      ++    SS+LG   +           TQ
Sbjct: 579  SLLAAVSSIFGKKTTTQSMSSSLKIPSSHESTSL---SSSLLGTTPS-----------TQ 624

Query: 1500 FTSLGSHMSPSSHDSILLSASTLQREADKALVPPVSIILSTLVAKGLISASK--AXXXXX 1673
             T+L    +P S+ S LLS                     TL++KGLISAS+        
Sbjct: 625  STTL---PNPESNVSSLLS---------------------TLLSKGLISASEDNNNKNNN 660

Query: 1674 XXXXXXXXXKTDPPASLAVPAVIPK-KTKTPLTNDEPSISSSYVKRTVTVPQLTQEDITS 1850
                     K+D   +   P + PK  +K+ + N++                       S
Sbjct: 661  INNNNNNNNKSDDVIATQTPKLTPKVSSKSVVINNK-----------------------S 697

Query: 1851 VIGFEFKPDVIRRSHPAVISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTP 2030
            V+G EFKPDVIR  +P VIS+LIDDLPHQC ICGLRFK+QE FD H+EWH LK  E  TP
Sbjct: 698  VVGLEFKPDVIREFNPCVISELIDDLPHQCGICGLRFKVQEPFDNHMEWHVLKNSESNTP 757

Query: 2031 D-KVSRRWFVNSDDWAKEKP--ELQSGDLPTGPVEIDGEQMVAADENQCVCILCGELFDD 2201
            + K SRRWF+ +++W   +   +   G        IDGEQMV ADE Q VC+LCGE+FDD
Sbjct: 758  NTKSSRRWFLKAENWVNGESDFDFDPGSTTQETFLIDGEQMVTADETQIVCVLCGEIFDD 817

Query: 2202 FYYQKMDKWMFRRAVHLSINDGATQGPIVHAHCISENSISDLGLSNDVKREE 2357
            FY Q+ +KWMF+RA +L+I +G T+G IVH +C+S NS+SDLGL+NDVK E+
Sbjct: 818  FYNQERNKWMFKRAAYLNIGNGGTRGVIVHENCVSVNSLSDLGLANDVKVEK 869


>gb|POE58102.1| isoform 2 of polyadenylation and cleavage factor like 4 [Quercus
            suber]
          Length = 1113

 Score =  433 bits (1114), Expect = e-132
 Identities = 319/955 (33%), Positives = 455/955 (47%), Gaps = 169/955 (17%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNG-SSLGSTAARFE 179
            VFCKAYRQVDP VHS MRHLFGTWKGVFP Q+LQ IEK LGF    NG SS  +T ++ +
Sbjct: 181  VFCKAYRQVDPPVHSSMRHLFGTWKGVFPLQTLQMIEKDLGFTPMINGSSSAATTTSKPD 240

Query: 180  PEPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTN--LLNTPEDTERQDRIAANISSI 353
             + QRP  SIHVNPKYLE R RLQQS+ AK   +D +  + N+PED ER DR  A +S+ 
Sbjct: 241  SQSQRPPHSIHVNPKYLE-RQRLQQSSRAKGMPNDLSGGVANSPEDAERLDR-TATMSAG 298

Query: 354  RPRADP--RIKNIQQIQREVEGASIHD-NDSAPYNDCDYGSDAGFRKSSAT------VGE 506
            RP  D   R+ N+Q+  R+     +H+ N  A Y D +Y SD      SAT      + E
Sbjct: 299  RPWMDSSVRVPNVQRPNRDALSGPLHEKNVGAAYGDYEYSSDLSRTLGSATGRTGGRIAE 358

Query: 507  QGFNNSWYGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEV 680
            QG +  WYG+ ++  E IS Q+NGF++KHG+     P+SA AD++L+PT +I  +    +
Sbjct: 359  QGHDKPWYGAASSVVETISSQKNGFNIKHGLPNYRAPKSAYADLQLKPTQSITNRSSGAI 418

Query: 681  NGSWKNSEEEEYTWDGMNSRVANPGKS--NSSSKRDPRSQPK-------LEKMGFQ-KLQ 830
            + SWKNSEEEE+ WD +NSR+ + G    ++ S++DP    K        EK+ F+  L+
Sbjct: 419  SSSWKNSEEEEFMWDDVNSRLPDHGAPTISNDSRKDPNDSRKNRWIPDDSEKLAFEYDLR 478

Query: 831  GIKDTNPLSTDQNNGGVFXXXXXXXXXXXXXXFNGVATSVNSLSKTSLESPIRSSHVDGP 1010
                 + +++  +   +               +N      +   ++S   P++S  +D  
Sbjct: 479  KPHSFDDVASKVSEASI------------DLLYNEQKELTSLGHRSSSSFPLQSRSID-- 524

Query: 1011 GLMFTPSVVRGQQRHTNGVAXXXXXXXXXXXXXXXXXXTY----NASKIMHDIAAQDGPD 1178
            GL    S   G     +GV+                  ++      + + + ++   GPD
Sbjct: 525  GLTRNSSQSEGYAATLSGVSTSVPSSLSRMGGRQQMGSSHIGASGLAVLTNAVSGSSGPD 584

Query: 1179 SKPAQSRGQKGISSIKGIPQILRMGNSQKPQIRNSHSVKHEPFQSPTT------------ 1322
                QS  +  + +     Q+L   N      RN ++    PFQSP              
Sbjct: 585  HPQTQSLPRPDLKA----SQLLGRVNVGP---RNKYTQDSSPFQSPNVQPGHLQRLQPRG 637

Query: 1323 -KMSVDANQLVGSSMDQLKSSTADIP---GPSTPGNMLAAV--------SSILG------ 1448
             + SV + Q       Q  S+ ++ P   G S+  N+LAAV        +SI G      
Sbjct: 638  LQPSVTSFQSRHHDQQQADSTQSEPPESSGQSSRANLLAAVLKTGILSNNSITGSLPNLS 697

Query: 1449 --------KKSNXXXXXXXXXXXTQFTSLGSHMSP-----SSHDSILLSASTLQREADKA 1589
                     +S            TQFTS G  +       SSH+ +   A   QR+  + 
Sbjct: 698  AQDKGQMTSQSGVQPPLPSGPPPTQFTSSGPSVVSATSLGSSHNKLPAPADVSQRKVGQP 757

Query: 1590 LVP-------------------------PVSIILSTLVAKGLISASKAXXXXXXXXXXXX 1694
             +P                         P+S +LS+LVAKGLISASK             
Sbjct: 758  PLPPGPPPSSLVDSASAQTSSAVNNDPIPISNLLSSLVAKGLISASKTDSQTLVPTQMPN 817

Query: 1695 XXK--------------TDPPASLAVPA------------------VIPKKTKTPL---- 1766
              +              +  P SLA+PA                   +P+ T   +    
Sbjct: 818  QSQNKSPDSTTTSSVSVSSVPDSLAIPASTTRDEVSFSEPANKSSVALPQPTTMEIKNLS 877

Query: 1767 ---------------------TNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVI 1883
                                 T DE S S    K +V +PQ T  +I ++IGFEFK DVI
Sbjct: 878  TTTSSVSVSSVPDSSAIPASTTRDEVSFSEPANKSSVALPQSTTMEIENLIGFEFKSDVI 937

Query: 1884 RRSHPAVISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNS 2063
            R  HP+VIS L D LPH+CS+CGLR KLQ+  D+H++WH LK  E       SRRW+ NS
Sbjct: 938  REFHPSVISGLYDGLPHRCSVCGLRLKLQQYLDRHLDWHALKISEANGLIGPSRRWYTNS 997

Query: 2064 DDWAKEKPELQSGDLPTGPVE------IDGEQMVAADENQCVCILCGELFDDFYYQKMDK 2225
              W   K  L  G+   G V+      +  E MV  DE+QC C+LCGE+F+DFY Q+ ++
Sbjct: 998  SGWVAGKAGLPPGNESAGSVDESSKTTVMDELMVPVDESQCACVLCGEVFEDFYSQEREE 1057

Query: 2226 WMFRRAVHLSI----------NDGATQGPIVHAHCISENSISDLGLSNDVKREEG 2360
            WMF+ AV++++          N+ A +GPIVHA+CISE+SI DL L++ +K E+G
Sbjct: 1058 WMFKAAVYMTMSSREGEIGTSNESAVKGPIVHANCISESSIHDLELASSIKMEKG 1112


>ref|XP_023745993.1| polyadenylation and cleavage factor homolog 4-like isoform X2
            [Lactuca sativa]
 gb|PLY64634.1| hypothetical protein LSAT_6X27120 [Lactuca sativa]
          Length = 870

 Score =  424 bits (1089), Expect = e-131
 Identities = 313/832 (37%), Positives = 422/832 (50%), Gaps = 47/832 (5%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNG------SSLGST 164
            VFCKAYRQVD A+HSGMRHLFGTWKGVFP QSLQ+IEK+LGF +  NG      SS G T
Sbjct: 166  VFCKAYRQVDSALHSGMRHLFGTWKGVFPPQSLQSIEKELGFSTVGNGNGNGNVSSSGLT 225

Query: 165  AARFEPEPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAANI 344
             +R E +PQRPA SIHVNPKYLEAR +LQQSN  K   SD +                  
Sbjct: 226  TSRPESQPQRPARSIHVNPKYLEARQKLQQSNRPKVAASDIS------------------ 267

Query: 345  SSIRPRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFNNS 524
                 RADPR+K     QR+ E    ++N     +D    S+  F KS+  VGEQG   +
Sbjct: 268  ---TTRADPRLK--LHAQRDPESDLTNENYEFG-SDISSPSEGSFGKSNGRVGEQGLEKT 321

Query: 525  WYGSGNNSTEPISG-QRNGFDMKHGILSVPRSANADVKLQPTNNIARKRGSEVNGSWKNS 701
            WYGS +N+T+ IS  +RNG  +     S+ +S+  DVK QP NN+ +  G EV+ SWKNS
Sbjct: 322  WYGSVSNTTDTISRLERNGHTLSSN-YSLHKSSIPDVKSQPINNLIKGSG-EVSRSWKNS 379

Query: 702  EEEEYTWDGMNSRVANP-GKSNSSSKRDPRSQPKLEKMGF----QKLQGI--KDTNP--- 851
            EEEEY WD ++SR  NP   S++SSKRDPR     ++ GF    QK Q +  K+++P   
Sbjct: 380  EEEEYLWDDVSSRTVNPILTSSNSSKRDPRLYFDPDRPGFDNRLQKSQRMHEKESSPDLP 439

Query: 852  ------------------LSTDQNN--GGVFXXXXXXXXXXXXXXFNGVATSVNSLSKTS 971
                               STD+N+  G                    V+TS++SLS+ S
Sbjct: 440  SAEQRIPLPSTSLRAKGSFSTDENSFVGASRNLLHGSKVFPSSSSGVSVSTSLDSLSRIS 499

Query: 972  LESPIRSSHVDGPGLMFTPSVVRGQQRHTNGVAXXXXXXXXXXXXXXXXXXTYNASKIMH 1151
            L+S ++++   G        + +  Q+                            SK+ +
Sbjct: 500  LQS-LKAARSQG-------QISQDSQK----------------------------SKLQN 523

Query: 1152 DIAAQDGPDSKPAQSRGQKGISSIKGIPQ---ILRMGNSQKPQIRNSHSVKHEPFQSPTT 1322
                +  P   P Q    +     +  PQ    L +   QKP + +       P  S T+
Sbjct: 524  LHPMKRTPFPPPHQEPVSEPSVQFQPQPQPPKPLPVPRQQKPVVADI------PGLSSTS 577

Query: 1323 KMSVDANQLVG-SSMDQLKSSTADIPGPSTPGNMLAAVSSILGKKSNXXXXXXXXXXXTQ 1499
             +    + + G  +  Q  SS+  IP      ++    SS+LG   +           TQ
Sbjct: 578  SLLAAVSSIFGKKTTTQSMSSSLKIPSSHESTSL---SSSLLGTTPS-----------TQ 623

Query: 1500 FTSLGSHMSPSSHDSILLSASTLQREADKALVPPVSIILSTLVAKGLISASK--AXXXXX 1673
             T+L    +P S+ S LLS                     TL++KGLISAS+        
Sbjct: 624  STTL---PNPESNVSSLLS---------------------TLLSKGLISASEDNNNKNNN 659

Query: 1674 XXXXXXXXXKTDPPASLAVPAVIPK-KTKTPLTNDEPSISSSYVKRTVTVPQLTQEDITS 1850
                     K+D   +   P + PK  +K+ + N++                       S
Sbjct: 660  INNNNNNNNKSDDVIATQTPKLTPKVSSKSVVINNK-----------------------S 696

Query: 1851 VIGFEFKPDVIRRSHPAVISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTP 2030
            V+G EFKPDVIR  +P VIS+LIDDLPHQC ICGLRFK+QE FD H+EWH LK  E  TP
Sbjct: 697  VVGLEFKPDVIREFNPCVISELIDDLPHQCGICGLRFKVQEPFDNHMEWHVLKNSESNTP 756

Query: 2031 D-KVSRRWFVNSDDWAKEKP--ELQSGDLPTGPVEIDGEQMVAADENQCVCILCGELFDD 2201
            + K SRRWF+ +++W   +   +   G        IDGEQMV ADE Q VC+LCGE+FDD
Sbjct: 757  NTKSSRRWFLKAENWVNGESDFDFDPGSTTQETFLIDGEQMVTADETQIVCVLCGEIFDD 816

Query: 2202 FYYQKMDKWMFRRAVHLSINDGATQGPIVHAHCISENSISDLGLSNDVKREE 2357
            FY Q+ +KWMF+RA +L+I +G T+G IVH +C+S NS+SDLGL+NDVK E+
Sbjct: 817  FYNQERNKWMFKRAAYLNIGNGGTRGVIVHENCVSVNSLSDLGLANDVKVEK 868


>ref|XP_023894769.1| LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4
            [Quercus suber]
          Length = 1190

 Score =  426 bits (1095), Expect = e-129
 Identities = 330/1014 (32%), Positives = 463/1014 (45%), Gaps = 228/1014 (22%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNG-SSLGSTAARFE 179
            VFCKAYRQVDP VHS MRHLFGTWKGVFP Q+LQ IEK LGF    NG SS  +T ++ +
Sbjct: 181  VFCKAYRQVDPPVHSSMRHLFGTWKGVFPLQTLQMIEKDLGFTPMINGSSSAATTTSKPD 240

Query: 180  PEPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTN--LLNTPEDTERQDRIAANISSI 353
             + QRP  SIHVNPKYLE R RLQQS+ AK   +D +  + N+PED ER DR  A +S+ 
Sbjct: 241  SQSQRPPHSIHVNPKYLE-RQRLQQSSRAKGMPNDLSGGVANSPEDAERLDR-TATMSAG 298

Query: 354  RPRADP--RIKNIQQIQREVEGASIHD-NDSAPYNDCDYGSDAGFRKSSAT------VGE 506
            RP  D   R+ N+Q+  R+     +H+ N  A Y D +Y SD      SAT      + E
Sbjct: 299  RPWMDSSVRVPNVQRPNRDALSGPLHEKNVGAAYGDYEYSSDLSRTLGSATGRTGGRIAE 358

Query: 507  QGFNNSWYGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEV 680
            QG +  WYG+ ++  E IS Q+NGF++KHG+     P+SA AD++L+PT +I  +    +
Sbjct: 359  QGHDKPWYGAASSVVETISSQKNGFNIKHGLPNYRAPKSAYADLQLKPTQSITNRSSGAI 418

Query: 681  NGSWKNSEEEEYTWDGMNSRVANPGKS--NSSSKRDPRSQPK-------LEKMGFQ---- 821
            + SWKNSEEEE+ WD +NSR+ + G    ++ S++DP    K        EK+ F+    
Sbjct: 419  SSSWKNSEEEEFMWDDVNSRLPDHGAPTISNDSRKDPNDSRKNRWIPDDSEKLAFEYDLR 478

Query: 822  KLQGIKD-----------------------------TNPLSTDQNNGGVFXXXXXXXXXX 914
            K     D                             + PL +   +G             
Sbjct: 479  KPHSFDDVASKVSEASIDLLYNEQKELTSLGHRSSSSFPLQSRSIDG---LTRNSSQSEG 535

Query: 915  XXXXFNGVATSV-NSLSKTSLESPIRSSHVDGPGLMFTPSVVRG-------QQRHTNGVA 1070
                 +GV+TSV +SLS+      + SSH+   GL    + V G       QQ  + GVA
Sbjct: 536  YAATLSGVSTSVPSSLSRMGGRQQMGSSHIGASGLAVLTNAVSGSSGPVGQQQFQSLGVA 595

Query: 1071 XXXXXXXXXXXXXXXXXXTYNASKIMHDIAAQD--------GPDSKPAQSRGQKGISSIK 1226
                               +       ++  QD         PD K +Q  G+  +    
Sbjct: 596  SPSAHSPMHQHPPXPSLTVHPLHHQSLNLTEQDHPQTQSLPRPDLKASQLLGRVNVGPRN 655

Query: 1227 GIPQ--------ILRMGNSQK-------PQIRNSHSVKHEPFQSPTTKMSVDA------- 1340
               Q         ++ G+ Q+       P + +  S  H+  Q+ +T+            
Sbjct: 656  KYTQDSSPFQSPNVQPGHLQRLQPRGLQPSVTSFQSRHHDQQQADSTQSEPPGEIRKPFL 715

Query: 1341 ---------NQLVGSSMDQLKSSTADIPGPSTPGNMLAAV--------SSILG------- 1448
                     + +  S  D   +  A+  G S+  N+LAAV        +SI G       
Sbjct: 716  PPVSDFGTPSTMENSESDHSNTLAAESSGQSSRANLLAAVLKTGILSNNSITGSLPNLSA 775

Query: 1449 -------KKSNXXXXXXXXXXXTQFTSLGSHMSP-----SSHDSILLSASTLQREADKAL 1592
                    +S            TQFTS G  +       SSH+ +   A   QR+  +  
Sbjct: 776  QDKGQMTSQSGVQPPLPSGPPPTQFTSSGPSVVSATSLGSSHNKLPAPADVSQRKVGQPP 835

Query: 1593 VP-------------------------PVSIILSTLVAKGLISASKAXXXXXXXXXXXXX 1697
            +P                         P+S +LS+LVAKGLISASK              
Sbjct: 836  LPPGPPPSSLVDSASAQTSSAVNNDPIPISNLLSSLVAKGLISASKTDSQTLVPTQMPNQ 895

Query: 1698 XK--------------TDPPASLAVPA------------------VIPKKTKTPL----- 1766
             +              +  P SLA+PA                   +P+ T   +     
Sbjct: 896  SQNKSPDSTTTSSVSVSSVPDSLAIPASTTRDEVSFSEPANKSSVALPQPTTMEIKNLST 955

Query: 1767 --------------------TNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIR 1886
                                T DE S S    K +V +PQ T  +I ++IGFEFK DVIR
Sbjct: 956  TTSSVSVSSVPDSSAIPASTTRDEVSFSEPANKSSVALPQSTTMEIENLIGFEFKSDVIR 1015

Query: 1887 RSHPAVISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSD 2066
              HP+VIS L D LPH+CS+CGLR KLQ+  D+H++WH LK  E       SRRW+ NS 
Sbjct: 1016 EFHPSVISGLYDGLPHRCSVCGLRLKLQQYLDRHLDWHALKISEANGLIGPSRRWYTNSS 1075

Query: 2067 DWAKEKPELQSGDLPTGPVE------IDGEQMVAADENQCVCILCGELFDDFYYQKMDKW 2228
             W   K  L  G+   G V+      +  E MV  DE+QC C+LCGE+F+DFY Q+ ++W
Sbjct: 1076 GWVAGKAGLPPGNESAGSVDESSKTTVMDELMVPVDESQCACVLCGEVFEDFYSQEREEW 1135

Query: 2229 MFRRAVHLSI----------NDGATQGPIVHAHCISENSISDLGLSNDVKREEG 2360
            MF+ AV++++          N+ A +GPIVHA+CISE+SI DL L++ +K E+G
Sbjct: 1136 MFKAAVYMTMSSREGEIGTSNESAVKGPIVHANCISESSIHDLELASSIKMEKG 1189


>gb|OMO82068.1| hypothetical protein CCACVL1_12088 [Corchorus capsularis]
          Length = 1119

 Score =  413 bits (1061), Expect = e-124
 Identities = 320/944 (33%), Positives = 455/944 (48%), Gaps = 162/944 (17%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDP VH  MRHLFGTWKGVFP Q+LQ IEK+LGF    NGSS G+T +R +P
Sbjct: 168  VFCKAYRQVDPPVHQSMRHLFGTWKGVFPLQALQLIEKELGFAPVINGSSSGTTTSRPDP 227

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDT--NLLNTPEDTERQDRIAANISSIR 356
              QRPA SIHVNPKYLE + RLQQS  AK   +D    L N+ ED+ER DR A  I++ R
Sbjct: 228  LSQRPAHSIHVNPKYLE-KQRLQQSTRAKGVVNDMTGTLANSKEDSERPDRTA--ITAGR 284

Query: 357  PRADPRIK--NIQQIQREVEGASI-HDNDSAPYNDCDYGSD-------AGFRKSSATVGE 506
            P  +P IK  NIQ   R+V    +   N SA + D +YGS+          R S     +
Sbjct: 285  PYVEPSIKMSNIQCTHRDVYNEPVCEKNISATFADYNYGSNLLQAPGMGVGRTSGKATTD 344

Query: 507  QGFNNSWYGSGNNSTEPISGQRNGFDMKHGILS--VPRSANADVKLQPTNNIARKRGSEV 680
            QG +  WYG+ ++ TE IS QRNGF++KHG  +    ++ NAD +LQ   N+A +  S +
Sbjct: 345  QGHDRPWYGATSSVTETISSQRNGFNIKHGSQNYLASKTVNADPRLQAAQNLAGRSSSGL 404

Query: 681  NGSWKNSEEEEYTWDGMNSRVANPGKSN--SSSKRDPRSQPKLEKMGFQ----KLQGIKD 842
            + SWKNSEEEE+ W+ M+SR++    +N  ++S++D  +    EK+ F+    K QGI D
Sbjct: 405  SSSWKNSEEEEFMWE-MHSRLSEHDAANISNNSRKDLWTPDVSEKLDFESQLRKAQGIHD 463

Query: 843  TNP----------LSTDQNNGGVFXXXXXXXXXXXXXXFNGVAT---------------- 944
              P          LST+++                    +G+ T                
Sbjct: 464  VGPRVDRETSADSLSTEKDKTSYGRRISSAWPLQESQKTDGLPTIHSGHSENYSASVGGL 523

Query: 945  ---SVNSLSKTSLESPIRSSHVDGPGLMFTPSV------VRGQQRHTN-GVAXXXXXXXX 1094
               + +SL++  + + + SS++  PG     +V        GQQR ++ G A        
Sbjct: 524  PTGAASSLTRMGMRTQMGSSNLGTPGYGILANVAPGSSGTLGQQRFSSLGNASPPEQSPM 583

Query: 1095 XXXXXXXXXXTYNASKIMHDIAAQDGP--------DSKPAQSRGQKGISSIKGIPQ---- 1238
                        + ++ +  +A  + P        D KP+   G+  + + K  PQ    
Sbjct: 584  RQHSPSPSFPGRHPNQQLQKLAEHEYPQAHSLPRTDPKPSHLSGKLNVGAYKPAPQTSSA 643

Query: 1239 ----------ILRMGNSQKPQIRNSHSVK-HEPFQSPTTKMSVDANQLVGSSMDQLKSST 1385
                            SQ   +++  S K  +P  S T+K+   A   +G++ +Q     
Sbjct: 644  TISSFQPNRHYTLSQPSQPDSVQDEPSSKAQKPLMSQTSKLG--AASTLGNASEQTNPLA 701

Query: 1386 ADIPGPSTPGNMLAAV------------SSILGKKS-------NXXXXXXXXXXXTQFTS 1508
             +    S+  ++LAAV            SS+ GK S       +           T  TS
Sbjct: 702  IEASELSSTSSLLAAVMKSGILSSISFTSSVPGKLSQDVGQMPSQPSLPNGSPLSTLTTS 761

Query: 1509 -----LGSHMSPSSHDSILLSASTLQREADKALVP------------------------P 1601
                 L +    +SHD+++ + S  Q +    L P                        P
Sbjct: 762  GLRVNLATSSGSASHDAMVATTSGSQGKEQSPLPPGPPPPALDSNDPVQASDAESKASNP 821

Query: 1602 VSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPP----------------ASLAVP 1733
            +S +LS+LVAKGLISASK               +   P                 S  +P
Sbjct: 822  ISSLLSSLVAKGLISASKKDAPSLPSQKMPSKMQKKSPVKERPTESLNRSSGISTSSPLP 881

Query: 1734 A-VIPKKTKTP--LTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAV 1904
            A  IP+ +  P   T DE ++     K +V   + T  ++ ++IGFEF+PD+IR  H +V
Sbjct: 882  ASSIPRSSDAPHSSTVDEVAVVEPAEKGSVASHKSTSMEVKNLIGFEFRPDLIREFHSSV 941

Query: 1905 ISDLIDDLPHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEK 2084
            IS L+DDLPH CS+CGLR K +ER  +H+EWH +K  E K      R W+  SDDW   K
Sbjct: 942  ISGLLDDLPHCCSLCGLRLKHEERLKRHLEWHAMKKTESKGSAGALRGWYARSDDWVAGK 1001

Query: 2085 PELQSGDLPTGPVE------IDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAV 2246
            P  QS    TG V          E MV ++ENQ  C+LCGELF+D++ Q   +WMF+ AV
Sbjct: 1002 PG-QSVFESTGSVNKLEKTTEKDELMVLSNENQYACMLCGELFEDYFSQDKGEWMFKGAV 1060

Query: 2247 HLSI----------NDGATQGPIVHAHCISENSISDLGLSNDVK 2348
            +L+I          ++ A +GPIVHA CISE+SI DLGL+  VK
Sbjct: 1061 YLTIPSKDGEVGTTDESAAKGPIVHATCISESSIDDLGLARAVK 1104


>ref|XP_006430296.1| polyadenylation and cleavage factor homolog 4 isoform X1 [Citrus
            clementina]
 ref|XP_024038209.1| polyadenylation and cleavage factor homolog 4 isoform X1 [Citrus
            clementina]
 gb|ESR43536.1| hypothetical protein CICLE_v10010952mg [Citrus clementina]
          Length = 1073

 Score =  399 bits (1026), Expect = e-120
 Identities = 308/929 (33%), Positives = 434/929 (46%), Gaps = 144/929 (15%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVD AV S MRHLFGTWKGVFP  +LQ IEK+LGF S  NGSS G+T +R + 
Sbjct: 152  VFCKAYRQVDAAVRSSMRHLFGTWKGVFPPMTLQIIEKELGFTSVVNGSSSGATTSRHDS 211

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTN--LLNTPEDTERQDRIAANISSIR 356
            + QRP  SIHVNPKYLE R RLQQ++ AK   +D N  + ++  D ER DR A+++S+ R
Sbjct: 212  QSQRPPHSIHVNPKYLE-RQRLQQTSRAKGLVNDMNGAVASSTVDAERPDR-ASSMSASR 269

Query: 357  PRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSD------AGFRKSSATVGEQGFN 518
            P  DP +K +Q  QR+     IH+ +   Y D DYGS+       G  +++  V +QG+ 
Sbjct: 270  PWVDPTVK-MQHSQRDALSEPIHEKNIGAYGDYDYGSELSRSSGLGSGRTTGRVSDQGYE 328

Query: 519  NSWYGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNGSW 692
              WYGSG+N +E I+GQRNGF+ K G    S  +SANA   LQ   +I +   S ++ SW
Sbjct: 329  KPWYGSGSNISETIAGQRNGFNKKQGFPNYSASKSANAAAHLQQVQSIPKSSSSGLS-SW 387

Query: 693  KNSEEEEYTWDGMNSRVANPGKSNSS--SKRDPRSQPKLEKM----GFQKLQGIKD---- 842
            KNSEEEE+ WD M+ R ++   +N S  S++D  +    EK+      +K QGI D    
Sbjct: 388  KNSEEEEFMWD-MHPRTSDHDAANISKNSRKDHLAVDGPEKLELDNHLRKPQGIHDVSSS 446

Query: 843  ------TNPLSTDQNNGGVFXXXXXXXXXXXXXXFNGV---------ATSVNSLSKTSLE 977
                  ++ LST+Q +   +               +G+         A+S +SL++T   
Sbjct: 447  FDRETSSDSLSTEQKDQAAYRHQMPSPWQLKEA--DGLIAATLGGFPASSSSSLARTGGH 504

Query: 978  SPIRSSHVDGPGLMFTPSVVRG-------QQRHTNGVAXXXXXXXXXXXXXXXXXXTYNA 1136
             P+ SSH+   G     S   G       Q+  +                       ++ 
Sbjct: 505  PPVVSSHIGTSGFGTLASSASGSTGSLATQRFQSARAGSPSGHSPMHHHSPSPSVPAHHP 564

Query: 1137 SKIMHDIAAQDGPDSKPAQSRGQKGISSIKGIPQILRMGNSQK--PQIRNSHS-----VK 1295
             + M +   +D P ++P  SR     SS  G+      G+S K  P I + +S      K
Sbjct: 565  RQNMQNCTDRDYPHAQPL-SRPDLKTSSFPGLVSSGPRGHSTKDSPSILHPNSQLGNLPK 623

Query: 1296 HEPFQSPTTKMSVDANQLVGSSMDQLKSSTADIPGPST--------------------PG 1415
             +P     +  +V + QL   S   L    ++   PST                      
Sbjct: 624  VQPQDLKGSSPAVTSFQLNCQSQKPLLPQVSNFGAPSTKEAVSDHSNPLDAEGLGQSGTS 683

Query: 1416 NMLAAV--SSILGKKSNXXXXXXXXXXXTQ--------------------FTSLGSHM-- 1523
            ++LA+V  S IL                 Q                     TS G+ +  
Sbjct: 684  SLLASVLKSGILNSSITDGLANRALKEVGQIPLQLDIQPPLPSGPPPPSLLTSSGARVGS 743

Query: 1524 ----SPSSHDSILLSASTLQREADKALV---PPVSIILSTLVAKGLISASKAXXXXXXXX 1682
                 PS  D      S+ QR+ ++  +   PP S + S+   K     SK         
Sbjct: 744  GSLSGPSQEDPPATMTSS-QRKVEQPPLPPGPPPSSLASSTSPKASSVESKTSNPISNLL 802

Query: 1683 XXXXXXKTDPPASLAVPAVIPKKTKTPLTNDEPSISSSYVKRTVTVPQL----------- 1829
                       +    P+    +  + + N+ P ISSS      +VP L           
Sbjct: 803  STLVAKGLISASKTEPPSHTTPQVTSRMQNESPGISSSSPATVSSVPNLLPIPPSSTVDE 862

Query: 1830 -----------------TQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLPHQCSICGLR 1958
                             T  +  ++IG +FKPDVIR  H +VI  L D  PH CSICGLR
Sbjct: 863  TSLPAPAGESSFALSESTTVETQNLIGLKFKPDVIREFHESVIKRLFDGFPHLCSICGLR 922

Query: 1959 FKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSG------DLPTGP 2120
             KLQE+ D+H+EWH L+ P L   DK+SRRW+ NSDDW   K  L  G         +G 
Sbjct: 923  LKLQEQLDRHLEWHALRKPGLDDVDKISRRWYANSDDWVAGKAGLPLGLESISCMEDSGK 982

Query: 2121 VEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSI----------NDGA 2270
               +GE MV AD+NQC C++CGELF+D Y Q   +WMF+ AV++ I          N+ +
Sbjct: 983  TIDEGEPMVPADDNQCACVMCGELFEDCYNQARGEWMFKAAVYMMIPSGNGEVGTTNESS 1042

Query: 2271 TQGPIVHAHCISENSISDLGLSNDVKREE 2357
             +GPIVH +CISENS+ DL + + VK E+
Sbjct: 1043 AKGPIVHGNCISENSVHDLRVISKVKVEK 1071


>ref|XP_008241290.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
            [Prunus mume]
          Length = 1094

 Score =  399 bits (1026), Expect = e-120
 Identities = 312/939 (33%), Positives = 444/939 (47%), Gaps = 154/939 (16%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQV+P VH  MRHLFGTWKGVFP+Q+LQ IEK+LGF S +NGSS G+  +R + 
Sbjct: 162  VFCKAYRQVEPNVHQSMRHLFGTWKGVFPAQTLQMIEKELGFASAANGSSSGAATSRLDS 221

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTN--LLNTPEDTERQDRIAANISSIR 356
            + QRPA SIHVNPKYLE R RLQQ   AK   SD +  + N+ +D ER DR+A+ +S+ R
Sbjct: 222  QSQRPAHSIHVNPKYLE-RQRLQQPTRAKGMASDFSGAMANSIDDAERPDRVAS-LSAGR 279

Query: 357  PRADPRIK--NIQQIQREVEGASIHD-NDSAPYNDCDYGSDA------GFRKSSATVGEQ 509
            P  DP +K  N+Q+   + +   +H+ N  A Y + +YGSD       G  +    + EQ
Sbjct: 280  PWVDPTVKMHNMQRSNTDAQSERVHEKNIGAEYGEYEYGSDLPRSSNLGIGRIGGKITEQ 339

Query: 510  GFNNSWYGSGNNSTEPISGQRNGFDMKHGIL--SVPRSANADVKLQPTNNIAR------- 662
            G +  WYG G++  E IS QRNGF++KHG+   S P+SANAD +L+    IA        
Sbjct: 340  GNDKPWYGGGSSVAETISSQRNGFNIKHGLTNYSAPKSANADPRLKTAPAIASRSSGVLS 399

Query: 663  ---KRGSEVNGSW----------------KNSEEEEYTWD-----GMNSRVANPGKSNSS 770
               K   E    W                 NS ++ +T D     G       P   N  
Sbjct: 400  TSWKNSEEEEFKWDDMNSRLTDHGPPDISSNSRKDRWTSDDSEKLGFGGHFHKPKGENDF 459

Query: 771  S-------KRDPRSQPKLEKMGFQKLQGIKDTNPLSTDQNNGGVFXXXXXXXXXXXXXXF 929
            S         DP     L  +G +    +    PL       G+               +
Sbjct: 460  STTVDLDMSADPTEHNDLSALGHR----MSSPWPLPDSHGVDGLTPTGTPVISSVHSERY 515

Query: 930  ----NGVATSVNS-LSKTSLESPIRSSHVD----GPGLMFTPSVVRGQQRHTNGV--AXX 1076
                +G++TS +S +++    + + SS +     G G    P+V  G+Q+    V  A  
Sbjct: 516  ASSLSGLSTSGDSSVARLGSRAQVASSRIGASSFGFGATSGPAVAVGKQKQLQSVRAASP 575

Query: 1077 XXXXXXXXXXXXXXXXTYNASKIMHDIAAQD--------GPDSKPAQSRGQKGIS----- 1217
                             ++    +  +A QD         PD K +Q  G+  +      
Sbjct: 576  SGQALVHQHSPAPTSTVHHPHHHLQSLAEQDYLESPSLPPPDLKVSQLLGKSDLGLHNHY 635

Query: 1218 ---SIKGIPQILRMGNSQK--PQIRNSHSVKHEPFQSPTTKMSVDANQLVGSSMDQLKSS 1382
               S+      +R+G+  K  PQ  +S S   +   SP     V  +    S  D     
Sbjct: 636  TEDSVPIPTSNVRLGSIAKSRPQDLHSSSSSIKNPSSPQLSTYVTPSTAGISIPDHSNLL 695

Query: 1383 TADIPGPSTPGNMLAAV--SSILGKKS--------------------NXXXXXXXXXXXT 1496
             A+  G S+  ++LAAV  + IL  KS                                T
Sbjct: 696  AAETSGQSSTSSLLAAVMKTGILSDKSITGSLPSLNLRDMGQIQSQPGVLPPLPSGPPPT 755

Query: 1497 QFTSLGSHMSP---SSHDSILLSASTLQREADKALVPP---------------------- 1601
            Q    GS ++    SSH S   S ++  ++     +PP                      
Sbjct: 756  QVALPGSKVASAPSSSHLSHENSPASSDKKVGHPPLPPSQPLSSLEGTASANASTVVNNA 815

Query: 1602 ---VSIILSTLVAKGLISASKAXXXXXXXXXXXXXXK-----TDPPASLAVPAVI--PKK 1751
               +S +LS+LVAKGLISASK+              +     T    S++V  V   P  
Sbjct: 816  SDPISNLLSSLVAKGLISASKSESPTPVSSQMPNELQNQSISTPVTGSVSVSPVSASPSL 875

Query: 1752 TKTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLP 1931
              +  TND  S++    K +  +PQ ++ +  + IG EFKPD IR  HP+VI +L DDLP
Sbjct: 876  PVSSRTNDV-SLAEPVAKTSAALPQSSKIETRNAIGIEFKPDKIREFHPSVIEELFDDLP 934

Query: 1932 HQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDW--AKEKPEL---- 2093
            H+CSICGLR KL+ER ++H+EWH LKTPE     K SRRW+ +S +W   K  P L    
Sbjct: 935  HKCSICGLRLKLKERLERHLEWHALKTPESNGSVKASRRWYADSTNWVAGKAGPPLGPED 994

Query: 2094 -QSGDLPTGPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSI---- 2258
              S D P+  ++ +GE MV ADE+QCVC++CG +F+D Y Q+ D+WMF+ A +LSI    
Sbjct: 995  NMSIDKPSETMD-NGEPMVPADESQCVCVICGYIFEDLYCQERDEWMFKGASYLSIPYGV 1053

Query: 2259 ------NDGATQGPIVHAHCISENSISDLGLSNDVKREE 2357
                   +   +GPIVHA+CI+ENS+SDLGL++ +K E+
Sbjct: 1054 GDLGTTEESVVKGPIVHANCIAENSLSDLGLASRIKLEK 1092


>ref|XP_008241291.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
            [Prunus mume]
          Length = 1091

 Score =  395 bits (1016), Expect = e-118
 Identities = 310/937 (33%), Positives = 442/937 (47%), Gaps = 152/937 (16%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQV+P VH  MRHLFGTWKGVFP+Q+LQ IEK+LGF S +NGSS G+  +R + 
Sbjct: 162  VFCKAYRQVEPNVHQSMRHLFGTWKGVFPAQTLQMIEKELGFASAANGSSSGAATSRLDS 221

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTN--LLNTPEDTERQDRIAANISSIR 356
            + QRPA SIHVNPKYLE R RLQQ   AK   SD +  + N+ +D ER DR+A+ +S+ R
Sbjct: 222  QSQRPAHSIHVNPKYLE-RQRLQQPTRAKGMASDFSGAMANSIDDAERPDRVAS-LSAGR 279

Query: 357  PRADPRIKNIQQIQREVEGASIHD-NDSAPYNDCDYGSDA------GFRKSSATVGEQGF 515
            P  DP +K + +   + +   +H+ N  A Y + +YGSD       G  +    + EQG 
Sbjct: 280  PWVDPTVK-MHRSNTDAQSERVHEKNIGAEYGEYEYGSDLPRSSNLGIGRIGGKITEQGN 338

Query: 516  NNSWYGSGNNSTEPISGQRNGFDMKHGIL--SVPRSANADVKLQPTNNIAR--------- 662
            +  WYG G++  E IS QRNGF++KHG+   S P+SANAD +L+    IA          
Sbjct: 339  DKPWYGGGSSVAETISSQRNGFNIKHGLTNYSAPKSANADPRLKTAPAIASRSSGVLSTS 398

Query: 663  -KRGSEVNGSW----------------KNSEEEEYTWD-----GMNSRVANPGKSNSSS- 773
             K   E    W                 NS ++ +T D     G       P   N  S 
Sbjct: 399  WKNSEEEEFKWDDMNSRLTDHGPPDISSNSRKDRWTSDDSEKLGFGGHFHKPKGENDFST 458

Query: 774  ------KRDPRSQPKLEKMGFQKLQGIKDTNPLSTDQNNGGVFXXXXXXXXXXXXXXF-- 929
                    DP     L  +G +    +    PL       G+               +  
Sbjct: 459  TVDLDMSADPTEHNDLSALGHR----MSSPWPLPDSHGVDGLTPTGTPVISSVHSERYAS 514

Query: 930  --NGVATSVNS-LSKTSLESPIRSSHVD----GPGLMFTPSVVRGQQRHTNGV--AXXXX 1082
              +G++TS +S +++    + + SS +     G G    P+V  G+Q+    V  A    
Sbjct: 515  SLSGLSTSGDSSVARLGSRAQVASSRIGASSFGFGATSGPAVAVGKQKQLQSVRAASPSG 574

Query: 1083 XXXXXXXXXXXXXXTYNASKIMHDIAAQD--------GPDSKPAQSRGQKGIS------- 1217
                           ++    +  +A QD         PD K +Q  G+  +        
Sbjct: 575  QALVHQHSPAPTSTVHHPHHHLQSLAEQDYLESPSLPPPDLKVSQLLGKSDLGLHNHYTE 634

Query: 1218 -SIKGIPQILRMGNSQK--PQIRNSHSVKHEPFQSPTTKMSVDANQLVGSSMDQLKSSTA 1388
             S+      +R+G+  K  PQ  +S S   +   SP     V  +    S  D      A
Sbjct: 635  DSVPIPTSNVRLGSIAKSRPQDLHSSSSSIKNPSSPQLSTYVTPSTAGISIPDHSNLLAA 694

Query: 1389 DIPGPSTPGNMLAAV--SSILGKKS--------------------NXXXXXXXXXXXTQF 1502
            +  G S+  ++LAAV  + IL  KS                                TQ 
Sbjct: 695  ETSGQSSTSSLLAAVMKTGILSDKSITGSLPSLNLRDMGQIQSQPGVLPPLPSGPPPTQV 754

Query: 1503 TSLGSHMSP---SSHDSILLSASTLQREADKALVPP------------------------ 1601
               GS ++    SSH S   S ++  ++     +PP                        
Sbjct: 755  ALPGSKVASAPSSSHLSHENSPASSDKKVGHPPLPPSQPLSSLEGTASANASTVVNNASD 814

Query: 1602 -VSIILSTLVAKGLISASKAXXXXXXXXXXXXXXK-----TDPPASLAVPAVI--PKKTK 1757
             +S +LS+LVAKGLISASK+              +     T    S++V  V   P    
Sbjct: 815  PISNLLSSLVAKGLISASKSESPTPVSSQMPNELQNQSISTPVTGSVSVSPVSASPSLPV 874

Query: 1758 TPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLPHQ 1937
            +  TND  S++    K +  +PQ ++ +  + IG EFKPD IR  HP+VI +L DDLPH+
Sbjct: 875  SSRTNDV-SLAEPVAKTSAALPQSSKIETRNAIGIEFKPDKIREFHPSVIEELFDDLPHK 933

Query: 1938 CSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDW--AKEKPEL-----Q 2096
            CSICGLR KL+ER ++H+EWH LKTPE     K SRRW+ +S +W   K  P L      
Sbjct: 934  CSICGLRLKLKERLERHLEWHALKTPESNGSVKASRRWYADSTNWVAGKAGPPLGPEDNM 993

Query: 2097 SGDLPTGPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSI------ 2258
            S D P+  ++ +GE MV ADE+QCVC++CG +F+D Y Q+ D+WMF+ A +LSI      
Sbjct: 994  SIDKPSETMD-NGEPMVPADESQCVCVICGYIFEDLYCQERDEWMFKGASYLSIPYGVGD 1052

Query: 2259 ----NDGATQGPIVHAHCISENSISDLGLSNDVKREE 2357
                 +   +GPIVHA+CI+ENS+SDLGL++ +K E+
Sbjct: 1053 LGTTEESVVKGPIVHANCIAENSLSDLGLASRIKLEK 1089


>gb|PNT31065.1| hypothetical protein POPTR_006G115600v3 [Populus trichocarpa]
          Length = 1082

 Score =  392 bits (1008), Expect = e-117
 Identities = 300/926 (32%), Positives = 441/926 (47%), Gaps = 141/926 (15%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVD +VHS MRHLFGTWKGVFP Q LQ IEK+LG     NGSS G+ A+R E 
Sbjct: 159  VFCKAYRQVDSSVHSSMRHLFGTWKGVFPPQPLQMIEKELGLAPAVNGSSAGAAASRSES 218

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTS--DTNLLNTPEDTERQDRIAANISSIR 356
            + QRP  SIHVNPKYLE R R+QQS+ AK  ++     + N+ ED E  DR A +I + R
Sbjct: 219  QSQRPPNSIHVNPKYLE-RQRIQQSSRAKGVSNVLTVPVANSIEDVEGPDR-AVSIDTRR 276

Query: 357  PRADPRIK--NIQQIQREVEGASIHDND--SAPYNDCDYGSDA------GFRKSSATVGE 506
            P  DP +K   +Q+  RE     +H+     A Y D +YGSD       G  ++S  V E
Sbjct: 277  PWVDPPVKTQTLQRSHREALNEPVHEKKKIGAIYEDFEYGSDVSRKSGLGIGRASGRVAE 336

Query: 507  --QGFNNSWYGSGNNSTEPISGQRNGFDMKHGILSVP--RSANADVKLQPTNNIARKRGS 674
              QG  N  YG+ +N+ E ISGQRNGF+MKHG  + P  +S+  D+ LQPT  I R   +
Sbjct: 337  QGQGQENPCYGTSSNAAELISGQRNGFNMKHGFPNYPASKSSMVDLHLQPTQRIGRSE-T 395

Query: 675  EVNGSWKNSEEEEYTWDGMNSRVA--NPGKSNSSSKRDPRSQPKLEKMGFQKLQGIKDTN 848
             ++ +WKNSEEEEY WD M+SR++  N    +++S++D       +KM  ++L G   ++
Sbjct: 396  GISANWKNSEEEEYIWD-MHSRLSDHNAAGLSNNSRKDHWIPDDSDKMDLERLDGETSSD 454

Query: 849  PLSTDQ--------------------NNGGVFXXXXXXXXXXXXXXFN----GVATSV-N 953
             LST+Q                    +  G+               ++    GVATS  +
Sbjct: 455  SLSTEQKEHATIGSRLSSPWKLPESHSTDGLILSGTSTTNTGHVEGYSATVGGVATSSRS 514

Query: 954  SLSKTSLESPIRSSHVDGPGLMFTPSV------VRGQQR-HTNGVAXXXXXXXXXXXXXX 1112
            SL + ++   + SSH+   GL  + +         GQQ+  + G A              
Sbjct: 515  SLGRMAVRPRLGSSHIGKAGLASSTNTSLLSTETLGQQKFQSQGAASPSGQSPIRQRPSS 574

Query: 1113 XXXXTYNASKIMHDIAAQDGPDSKPAQSRGQKGISSIKGIPQILRMGNSQK--------- 1265
                       + +   QD   S+       +   S   +P  +++G+  K         
Sbjct: 575  PAFQACYPQ--LQNSGEQDYHQSQSMTQPDYRAQFSGNLLPSNVQLGSLPKLHSEDLQAP 632

Query: 1266 --PQIRNSHSVKHEPFQSPTTKMSVDANQL-----------------VGSSMDQLKSSTA 1388
              P  + SH  +    + P +K S    Q+                 V S+ D L   TA
Sbjct: 633  SLPSFQLSHQHRLSQRRQPDSKESEAFGQIQRPHLPPVSNFGTSSTSVSSAADHLNPFTA 692

Query: 1389 DIPGPSTPGNMLAAV--SSILGKKSNXXXXXXXXXXXTQFTSL----------------- 1511
               G S+  ++LAAV  + IL K ++            +  S                  
Sbjct: 693  GTSGQSSTSSLLAAVMKTGILSKINSGVVPDRNFQDIGKMPSQSIIQPPLPSGPPPQFSF 752

Query: 1512 ------GSHMSPSSHDSILLSASTLQREADKALVP--------------------PVSII 1613
                   +  +P+     L + S + +  D+   P                    P+S +
Sbjct: 753  SEARIESASSAPAQSQDKLPTVSNISQRKDERPPPPLGSPPSSEQTTDAVNKAPNPISNL 812

Query: 1614 LSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPPASLAVPAVIPKKTKT--PLTNDEPSI 1787
            LS+LVAKGLIS SK+              +   P S+  P+  P  + T    T  E SI
Sbjct: 813  LSSLVAKGLISTSKSETSSPLPTQVPSQLQKKNP-SITSPSSEPISSATLHSSTVGEASI 871

Query: 1788 SSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLPHQCSICGLRFKL 1967
                 K +V + Q T+ +I  +IG EFKP+VIR  HP VIS L +DLPH+CS+CGL+ KL
Sbjct: 872  PEPDTKCSVALSQTTKVEIDDLIGLEFKPEVIRELHPPVISSLFEDLPHRCSLCGLQLKL 931

Query: 1968 QERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDLPTGPV-------E 2126
            +ER  +H+EWH  + PE    +  +R W+ +   W      L  G   + P+       E
Sbjct: 932  KERLHRHLEWHNQRKPESDGINGPTRGWYADLGHWLTVNDGLPLGVESSCPMDDFEETTE 991

Query: 2127 IDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSINDG---------ATQG 2279
             D ++ V A E+ CVC+LCG+LF+D+Y ++ +KWMF+ AV +++  G         + +G
Sbjct: 992  CD-DKTVLAHEDHCVCVLCGKLFEDYYCEERNKWMFKGAVRMTLPSGDGQMGTAKESAKG 1050

Query: 2280 PIVHAHCISENSISDLGLSNDVKREE 2357
            P VH +CISE+S+ DL L++ +K E+
Sbjct: 1051 PTVHVNCISESSLCDLVLASGIKMEK 1076


>gb|PNT31069.1| hypothetical protein POPTR_006G115600v3 [Populus trichocarpa]
          Length = 1084

 Score =  390 bits (1003), Expect = e-116
 Identities = 299/923 (32%), Positives = 439/923 (47%), Gaps = 141/923 (15%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVD +VHS MRHLFGTWKGVFP Q LQ IEK+LG     NGSS G+ A+R E 
Sbjct: 161  VFCKAYRQVDSSVHSSMRHLFGTWKGVFPPQPLQMIEKELGLAPAVNGSSAGAAASRSES 220

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTS--DTNLLNTPEDTERQDRIAANISSIR 356
            + QRP  SIHVNPKYLE R R+QQS+ AK  ++     + N+ ED E  DR A +I + R
Sbjct: 221  QSQRPPNSIHVNPKYLE-RQRIQQSSRAKGVSNVLTVPVANSIEDVEGPDR-AVSIDTRR 278

Query: 357  PRADPRIK--NIQQIQREVEGASIHDND--SAPYNDCDYGSDA------GFRKSSATVGE 506
            P  DP +K   +Q+  RE     +H+     A Y D +YGSD       G  ++S  V E
Sbjct: 279  PWVDPPVKTQTLQRSHREALNEPVHEKKKIGAIYEDFEYGSDVSRKSGLGIGRASGRVAE 338

Query: 507  --QGFNNSWYGSGNNSTEPISGQRNGFDMKHGILSVP--RSANADVKLQPTNNIARKRGS 674
              QG  N  YG+ +N+ E ISGQRNGF+MKHG  + P  +S+  D+ LQPT  I R   +
Sbjct: 339  QGQGQENPCYGTSSNAAELISGQRNGFNMKHGFPNYPASKSSMVDLHLQPTQRIGRSE-T 397

Query: 675  EVNGSWKNSEEEEYTWDGMNSRVA--NPGKSNSSSKRDPRSQPKLEKMGFQKLQGIKDTN 848
             ++ +WKNSEEEEY WD M+SR++  N    +++S++D       +KM  ++L G   ++
Sbjct: 398  GISANWKNSEEEEYIWD-MHSRLSDHNAAGLSNNSRKDHWIPDDSDKMDLERLDGETSSD 456

Query: 849  PLSTDQ--------------------NNGGVFXXXXXXXXXXXXXXFN----GVATSV-N 953
             LST+Q                    +  G+               ++    GVATS  +
Sbjct: 457  SLSTEQKEHATIGSRLSSPWKLPESHSTDGLILSGTSTTNTGHVEGYSATVGGVATSSRS 516

Query: 954  SLSKTSLESPIRSSHVDGPGLMFTPSV------VRGQQR-HTNGVAXXXXXXXXXXXXXX 1112
            SL + ++   + SSH+   GL  + +         GQQ+  + G A              
Sbjct: 517  SLGRMAVRPRLGSSHIGKAGLASSTNTSLLSTETLGQQKFQSQGAASPSGQSPIRQRPSS 576

Query: 1113 XXXXTYNASKIMHDIAAQDGPDSKPAQSRGQKGISSIKGIPQILRMGNSQK--------- 1265
                       + +   QD   S+       +   S   +P  +++G+  K         
Sbjct: 577  PAFQACYPQ--LQNSGEQDYHQSQSMTQPDYRAQFSGNLLPSNVQLGSLPKLHSEDLQAP 634

Query: 1266 --PQIRNSHSVKHEPFQSPTTKMSVDANQL-----------------VGSSMDQLKSSTA 1388
              P  + SH  +    + P +K S    Q+                 V S+ D L   TA
Sbjct: 635  SLPSFQLSHQHRLSQRRQPDSKESEAFGQIQRPHLPPVSNFGTSSTSVSSAADHLNPFTA 694

Query: 1389 DIPGPSTPGNMLAAV--SSILGKKSNXXXXXXXXXXXTQFTSL----------------- 1511
               G S+  ++LAAV  + IL K ++            +  S                  
Sbjct: 695  GTSGQSSTSSLLAAVMKTGILSKINSGVVPDRNFQDIGKMPSQSIIQPPLPSGPPPQFSF 754

Query: 1512 ------GSHMSPSSHDSILLSASTLQREADKALVP--------------------PVSII 1613
                   +  +P+     L + S + +  D+   P                    P+S +
Sbjct: 755  SEARIESASSAPAQSQDKLPTVSNISQRKDERPPPPLGSPPSSEQTTDAVNKAPNPISNL 814

Query: 1614 LSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPPASLAVPAVIPKKTKT--PLTNDEPSI 1787
            LS+LVAKGLIS SK+              +   P S+  P+  P  + T    T  E SI
Sbjct: 815  LSSLVAKGLISTSKSETSSPLPTQVPSQLQKKNP-SITSPSSEPISSATLHSSTVGEASI 873

Query: 1788 SSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLPHQCSICGLRFKL 1967
                 K +V + Q T+ +I  +IG EFKP+VIR  HP VIS L +DLPH+CS+CGL+ KL
Sbjct: 874  PEPDTKCSVALSQTTKVEIDDLIGLEFKPEVIRELHPPVISSLFEDLPHRCSLCGLQLKL 933

Query: 1968 QERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDLPTGPV-------E 2126
            +ER  +H+EWH  + PE    +  +R W+ +   W      L  G   + P+       E
Sbjct: 934  KERLHRHLEWHNQRKPESDGINGPTRGWYADLGHWLTVNDGLPLGVESSCPMDDFEETTE 993

Query: 2127 IDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSINDG---------ATQG 2279
             D ++ V A E+ CVC+LCG+LF+D+Y ++ +KWMF+ AV +++  G         + +G
Sbjct: 994  CD-DKTVLAHEDHCVCVLCGKLFEDYYCEERNKWMFKGAVRMTLPSGDGQMGTAKESAKG 1052

Query: 2280 PIVHAHCISENSISDLGLSNDVK 2348
            P VH +CISE+S+ DL L++ +K
Sbjct: 1053 PTVHVNCISESSLCDLVLASGIK 1075


>ref|XP_023749740.1| polyadenylation and cleavage factor homolog 4-like [Lactuca sativa]
 gb|PLY61645.1| hypothetical protein LSAT_2X21361 [Lactuca sativa]
          Length = 717

 Score =  268 bits (686), Expect = 1e-74
 Identities = 157/282 (55%), Positives = 184/282 (65%), Gaps = 18/282 (6%)
 Frame = +3

Query: 3   VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSN--------GSSLG 158
           VFCKAYRQVD AVHSGMRHLFGTWKGVFP Q LQ IE++LGFQ PSN         S LG
Sbjct: 177 VFCKAYRQVDSAVHSGMRHLFGTWKGVFPLQCLQIIERELGFQQPSNANGTSSSSSSPLG 236

Query: 159 STAARFEPEPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDTNLLNTPEDTERQDRIAA 338
            T++R EP+ QRP  SIHVNPKYLE R RLQQSN+ K+P +DTN +++P   ERQ++ AA
Sbjct: 237 LTSSRPEPQSQRPVRSIHVNPKYLE-RQRLQQSNSVKSPANDTNRVDSP---ERQEKTAA 292

Query: 339 NISSIRPRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFN 518
               +RPRADPR+KNIQQ QR+V+  SI +ND    ND DY S            E GF+
Sbjct: 293 ----MRPRADPRLKNIQQAQRDVDTVSIREND----NDFDYES------------EPGFD 332

Query: 519 NSWY-----GSGNNSTEPISGQRNGFDMKHGILSVPRSANADVKLQPTNNIARKRGSEVN 683
           +SWY       GN     +SGQRNG    HG   V     +   LQP+NNI  K+G  VN
Sbjct: 333 SSWYPPGGSSGGNGGDNILSGQRNG----HGFPKV-----SPPNLQPSNNIGSKKGVLVN 383

Query: 684 GSWKNSEEEEYTWDGMNSRVANPGKS-----NSSSKRDPRSQ 794
            SWKNSEEEEY WDG+NS++A PGKS        SKRDPRSQ
Sbjct: 384 KSWKNSEEEEYMWDGINSQLAVPGKSGGGGGGGGSKRDPRSQ 425



 Score =  244 bits (622), Expect = 9e-66
 Identities = 134/261 (51%), Positives = 165/261 (63%), Gaps = 7/261 (2%)
 Frame = +3

Query: 1596 PPVSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTDPPASLA-----VPAVIPKKTKT 1760
            P VS +LSTL+AKG+ISAS                  DPP +++      P V+P     
Sbjct: 501  PLVSSLLSTLIAKGIISASNP----------------DPPPAVSPPSPPAPVVVPSPVLL 544

Query: 1761 PLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDL--PH 1934
               N+ PS+S                DI S+IGF+FKP++IRRS+PAVISDLIDDL  P+
Sbjct: 545  STNNEPPSVS----------------DIKSIIGFDFKPEIIRRSNPAVISDLIDDLHLPY 588

Query: 1935 QCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDLPT 2114
            QC ICG+RFKL+ERF+KHIEWH  K P        SRRWF+NSD+W KEK     G    
Sbjct: 589  QCHICGIRFKLEERFEKHIEWHNRKYPP-------SRRWFINSDEWVKEK-----GGERM 636

Query: 2115 GPVEIDGEQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSINDGATQGPIVHA 2294
               EI GE+MV ADE+QCVC+ CGE+F+DFY ++M+KWMFRRA++L +  G   GPIVH 
Sbjct: 637  VAAEIGGERMVVADESQCVCVWCGEVFEDFYSEEMEKWMFRRAIYLGVK-GGDIGPIVHE 695

Query: 2295 HCISENSISDLGLSNDVKREE 2357
             CISENS  DLGLSNDVK EE
Sbjct: 696  DCISENSHFDLGLSNDVKSEE 716


>emb|CBI30249.3| unnamed protein product, partial [Vitis vinifera]
          Length = 1049

 Score =  258 bits (659), Expect = 7e-69
 Identities = 149/315 (47%), Positives = 185/315 (58%), Gaps = 21/315 (6%)
 Frame = +3

Query: 3    VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
            VFCKAYRQVDP++H GMRHLFGTWKGVFP   LQ IEK+LGF    NGSS G   +R + 
Sbjct: 235  VFCKAYRQVDPSIHPGMRHLFGTWKGVFPLAPLQMIEKELGFPPAINGSSPGIATSRSDS 294

Query: 183  EPQRPAGSIHVNPKYLEARPRLQQSNTAKAPTSDT--NLLNTPEDTERQDRIAANISSIR 356
            + QRP  SIHVNPKYLEAR RLQQS+  K   +D    ++N+ ED +R DR  A I++ R
Sbjct: 295  QSQRPPHSIHVNPKYLEARQRLQQSSRTKGAANDVTGTMVNSTEDADRLDR-TAGINAGR 353

Query: 357  PRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVG---EQGFNNSW 527
            P  D   K+IQ   RE  G  +     APY D +YG+D   R     +G   EQG +  W
Sbjct: 354  PWDDLPAKSIQHSHREAIGELVEKKIGAPYGDYEYGTDLS-RNPGLGIGRPSEQGHDKPW 412

Query: 528  YGSGNNSTEPISGQRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNGSWKNS 701
            Y +G    E  S QRNGFD+KHG      PRSANAD  LQPT +   +  S ++ SWKNS
Sbjct: 413  YKAGGRVVETFSSQRNGFDIKHGFPNYPAPRSANADAHLQPTQSTVNRSNSGMSRSWKNS 472

Query: 702  EEEEYTWDGMNSRVANPGKSNSSSKRDPRSQPKLEKMGF----QKLQGIKD--------- 842
            EEEEY WD MNS++     +N  SK+D  +    EK+ F    QK Q I D         
Sbjct: 473  EEEEYMWDDMNSKMTEHSAAN-HSKKDRWTPDDSEKLDFENQLQKPQSIYDVGSSVDRET 531

Query: 843  -TNPLSTDQNNGGVF 884
             T+ +S++Q   G F
Sbjct: 532  STDSMSSEQREQGAF 546



 Score =  234 bits (597), Expect = 1e-60
 Identities = 127/275 (46%), Positives = 167/275 (60%), Gaps = 22/275 (8%)
 Frame = +3

Query: 1599 PVSIILSTLVAKGLISASKAXXXXXXXXXXXXXXKTD----------PPASLAVPAVIPK 1748
            P++ +LS+LVAKGLISASK               +            P +S++V + +P 
Sbjct: 777  PIANLLSSLVAKGLISASKTESSTHVPTQMPARLQNQSAGISTISPIPVSSVSVASSVPL 836

Query: 1749 KTKTPLTNDEPSISSSYVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDL 1928
             +    T D  S +    K +V V Q T  ++ ++IGFEFK D+IR SHP+VIS+L DDL
Sbjct: 837  SS----TMDAVSHTEPAAKASVAVTQSTSVEVKNLIGFEFKSDIIRESHPSVISELFDDL 892

Query: 1929 PHQCSICGLRFKLQERFDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDL 2108
            PHQCSICGLR KL+ER D+H+EWH LK  E    ++ SR WFVNS +W  E     +   
Sbjct: 893  PHQCSICGLRLKLRERLDRHLEWHALKKSEPNGLNRASRSWFVNSGEWIAEVAGFPTEAK 952

Query: 2109 PTGPVEIDG------EQMVAADENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSINDGA 2270
             T P    G      EQMV ADENQCVC+LCGE+F+DFY Q+MDKWMFR AV +++    
Sbjct: 953  STSPAGESGKPLETSEQMVPADENQCVCVLCGEVFEDFYSQEMDKWMFRGAVKMTVPSQG 1012

Query: 2271 ------TQGPIVHAHCISENSISDLGLSNDVKREE 2357
                   QGPIVHA CI+E+S+ DLGL+ D+K E+
Sbjct: 1013 GELGTKNQGPIVHADCITESSVHDLGLACDIKVEK 1047


>ref|XP_022024434.1| polyadenylation and cleavage factor homolog 4-like isoform X2
            [Helianthus annuus]
          Length = 804

 Score =  250 bits (638), Expect = 2e-67
 Identities = 166/432 (38%), Positives = 227/432 (52%), Gaps = 25/432 (5%)
 Frame = +3

Query: 1140 KIMHDIAAQD--GPDSKPAQSRGQKGI----------SSIKGIPQILRMGNSQKPQIRNS 1283
            ++ +D+A QD    D K  + RGQK            +S +  P I +  NSQK +I+N 
Sbjct: 435  RVPYDLADQDIIESDDKAPRFRGQKNTGIPISSQSHQNSFQIKPPISQASNSQKSKIQNL 494

Query: 1284 HS------VKHEPFQSPTTKMSVDANQLVGSSMDQLKSSTADIPGPSTPGNMLAAVSSIL 1445
                    +KH+PF  P         + V   +    +S   +  P+   ++LAAVSSI 
Sbjct: 495  RPPSPQLPIKHDPFLPPYQP------EPVSDPVSTTSTSLGPLAHPTNASSLLAAVSSIF 548

Query: 1446 GKKSNXXXXXXXXXXXTQFTSLGSHMSPSSHDSILLSASTLQREADKALVPPVSIILSTL 1625
            G K             T  +++G+  S +S++                    VS +LSTL
Sbjct: 549  GNK---------PISSTVSSTVGNTASTASNN--------------------VSSLLSTL 579

Query: 1626 VAKGLISASKAXXXXXXXXXXXXXXKTDPPA--SLAVPAVIPKK-TKTPLTNDEPSISSS 1796
            VAKGLISAS                K   P+   + +P ++      T  T+ + S S  
Sbjct: 580  VAKGLISAS------------DDNSKNQSPSDDKIKIPPIVSSSLISTSSTSSDLSPSDP 627

Query: 1797 YVKRTVTVPQLTQEDITSVIGFEFKPDVIRRSHPAVISDLIDDLPHQCSICGLRFKLQER 1976
              K T      T E+I   IGFEF+ DVIR  HP VI+DLIDDLPHQCSICGLRFKLQER
Sbjct: 628  VSKTT------TNEEIKCPIGFEFRADVIREFHPGVINDLIDDLPHQCSICGLRFKLQER 681

Query: 1977 FDKHIEWHTLKTPELKTPDKVSRRWFVNSDDWAKEKPELQSGDLPTGPVEIDGEQMVAAD 2156
            FDKH+EWHTL+  +  +    SR+WF N +DW        +G    G +E+DGE MV AD
Sbjct: 682  FDKHMEWHTLRNSDADS----SRKWFFNREDWV-------NGSSNEGALEVDGETMVNAD 730

Query: 2157 ENQCVCILCGELFDDFYYQKMDKWMFRRAVHLSINDG----ATQGPIVHAHCISENSISD 2324
            E+Q VC+LCGE+FDDFY  +  KWMF+ A +L I +G    A  G IVH +C+S++S++D
Sbjct: 731  ESQVVCVLCGEVFDDFYSLERSKWMFKGAAYLDITNGKVGNAKNGVIVHVNCVSDHSLTD 790

Query: 2325 LGLSNDVKREEG 2360
            LGL +DVK E+G
Sbjct: 791  LGLVDDVKMEKG 802



 Score =  244 bits (624), Expect = 2e-65
 Identities = 148/269 (55%), Positives = 172/269 (63%), Gaps = 7/269 (2%)
 Frame = +3

Query: 3   VFCKAYRQVDPAVHSGMRHLFGTWKGVFPSQSLQAIEKQLGFQSPSNGSSLGSTAARFEP 182
           VFCKAYRQVD  VHSGMRHLFGTWKGVFP Q+LQ+IEK+LGFQS  NGS+ G T +R + 
Sbjct: 164 VFCKAYRQVDSTVHSGMRHLFGTWKGVFPPQTLQSIEKELGFQSAGNGSTSGLTTSRPDS 223

Query: 183 EPQR-PAGSIHVNPKYLEARPRLQQSNTAKAPTSD--TNLL-NTPEDTERQDRIAANISS 350
           +PQR PA SIHVNPKYLEAR +LQ    AK    D   NL+ N+PEDT RQDR+A N + 
Sbjct: 224 QPQRPPARSIHVNPKYLEARQKLQHPTRAKDTAGDITRNLISNSPEDTGRQDRMAVNTNL 283

Query: 351 IRPRADPRIKNIQQIQREVEGASIHDNDSAPYNDCDYGSDAGFRKSSATVGEQGFNNSWY 530
            R RADPR+K     QRE E    H+N  A YN+ D+GSD     SS  V E G      
Sbjct: 284 QRSRADPRLK--FNAQREAESDLTHENSGASYNNFDFGSDL----SSERVAEHG------ 331

Query: 531 GSGNNSTEPISG-QRNGFDMKHGI--LSVPRSANADVKLQPTNNIARKRGSEVNGSWKNS 701
                 TE IS   RN FD+KHG+   S  RSA  DVKLQ  N    K   E++ +WKNS
Sbjct: 332 ------TETISRLARNSFDVKHGLHNYSASRSAIPDVKLQSMN----KGTGEISRNWKNS 381

Query: 702 EEEEYTWDGMNSRVANPGKSNSSSKRDPR 788
           +EEEY WD ++S    P  SN SSKRDPR
Sbjct: 382 DEEEYMWDDVSSVATKPTSSN-SSKRDPR 409