BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00032813
         (1381 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   528   e-172
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   504   e-170
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   514   e-170
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   515   e-167
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   513   e-166
gb|PNY01730.1| copia-type polyprotein, partial [Trifolium pratense]   498   e-166
gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]            491   e-162
dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subt...   486   e-161
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   487   e-161
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            498   e-160
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   498   e-160
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   509   e-160
dbj|GAU15733.1| hypothetical protein TSUD_235460 [Trifolium subt...   489   e-160
gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]            491   e-160
gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]   481   e-160
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   494   e-159
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   491   e-159
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     509   e-159
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   469   e-158
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   481   e-158

>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  528 bits (1361), Expect = e-172
 Identities = 255/458 (55%), Positives = 326/458 (71%), Gaps = 2/458 (0%)
 Frame = -3

Query: 1379 LPHMWFEQPESKNHNIPLFLPVALLMAEINVEESAFM--VDATGKNKGMLWFLDSGCSNH 1206
            L H  +E P+++  N            E + EE   M  V+     +   WFLDSGCSNH
Sbjct: 252  LGHFRYECPDNREANY----------VENDEEELLLMSFVELYDAKREDAWFLDSGCSNH 301

Query: 1205 MCGNKDRFVNLDLGFTTSVKLGNNSRMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLL 1026
            MCG++  F  LD  F  SVKLGNN++M V GKG+VK  LNG  +++ +VY++P+L+NNLL
Sbjct: 302  MCGDRTMFSELDENFRHSVKLGNNTKMNVVGKGSVKFLLNGTNFIVTEVYYIPELRNNLL 361

Query: 1025 SIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYT 846
            SIGQLQ+KGL+ L +  +CK+FH EKGLI Q+ MSTNRMF +  + +   +  +D C +T
Sbjct: 362  SIGQLQEKGLAILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQAQVSPQAQSDQCFHT 421

Query: 845  SDEDNARLWHERMGHLSNTSMETLQKKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTS 666
              +D + LWH R GHLS   + TL  K+MVR LP+F I+  +C +C+ GKQ +  IPK S
Sbjct: 422  KAQDLSHLWHRRYGHLSYKGLRTLLYKNMVRGLPQFSISSVICTNCINGKQHRDPIPKKS 481

Query: 665  NWRAGEILELIHSDICGPITPVSHSGNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFK 486
            NWRA + LELIH+D+CGPI+P S+S  RY + FIDDYSRK WVY L EKS+AL SF+ FK
Sbjct: 482  NWRATQKLELIHADVCGPISPSSNSNKRYILLFIDDYSRKSWVYFLVEKSEALNSFKCFK 541

Query: 485  GKVETETGKTIKALRTDRGGEYLSNDFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVI 306
              VE E    IK LRTDRGGE+ SN+F  FC + G+KRQLTT+++PQQNGVAERKNRTV+
Sbjct: 542  TMVEKEAEMAIKCLRTDRGGEFNSNEFNDFCKQSGVKRQLTTAYTPQQNGVAERKNRTVM 601

Query: 305  NMVVSILSAKNMPKKFWGEATMWSFYVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGC 126
            NMV S+L  KN+PK FW EA  W+ YVLNRCPT A+ + TP+EAWSGVKP+V+HFRV+GC
Sbjct: 602  NMVRSLLFDKNIPKTFWPEAVNWTIYVLNRCPTLAVKDVTPEEAWSGVKPSVNHFRVFGC 661

Query: 125  IAHVHVPKEKRTKLDDKSFVCILTGMSEESKAYRLIDP 12
            IAHVHVP+ KRTKLD +S  C+L G+SEESK YR  DP
Sbjct: 662  IAHVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDP 699


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  504 bits (1297), Expect = e-170
 Identities = 243/434 (55%), Positives = 318/434 (73%), Gaps = 3/434 (0%)
 Frame = -3

Query: 1301 AEINVEESAFMVDATGKNKGM---LWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            AE+  E+   ++    +N      +WFLDSGCSNHMC NKD F N+D  F  SVKLGNN+
Sbjct: 284  AELEEEDELLLMAHVERNDSKPEDVWFLDSGCSNHMCCNKDWFTNIDEEFRHSVKLGNNA 343

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            RM V GKG+++L ++G T VI+DVY VP+L+NNLLSIGQLQ+KGL+ L Q  VCK++H +
Sbjct: 344  RMSVMGKGSIRLKVDGLTQVISDVYFVPELRNNLLSIGQLQEKGLAILIQHGVCKIYHSK 403

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            KGLI Q+ M+ NRMF +   +  V+      CM  S +D + LWH R  HL+   ++TL 
Sbjct: 404  KGLIMQTPMTANRMFVL---LANVVVTDFSTCMQASSDDLSHLWHCRYSHLNYKGLKTLH 460

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
             + MV+ LP+   +  VC DC++GKQ++ +IPK+S WRA + L+L+H+DICGPITP S+S
Sbjct: 461  YRKMVKGLPQIKASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLVHADICGPITPTSNS 520

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
              RY +SFIDD+SRK WVY LTEKSQA   F+++K  VE E G  I  LRTDRGGE+ SN
Sbjct: 521  DKRYVLSFIDDFSRKMWVYFLTEKSQAFTMFKRYKSLVEKEIGFPICCLRTDRGGEFTSN 580

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
            +F +FC  +GIKRQLT +++PQQNGVAER+NRTV+N+V SILS K +PK FW EA  W  
Sbjct: 581  EFNEFCQSNGIKRQLTAAYTPQQNGVAERRNRTVMNLVRSILSEKKIPKSFWPEAVNWVT 640

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            +VLNR PT+A+ + TP+EAWSGVKP V +FRV+GC+AHVH+P  KRTKLDDKS  C+L G
Sbjct: 641  HVLNRSPTQAVQDVTPEEAWSGVKPNVGYFRVFGCVAHVHIPDAKRTKLDDKSCKCVLLG 700

Query: 50   MSEESKAYRLIDPQ 9
            +SEE+K YRL +PQ
Sbjct: 701  VSEETKGYRLYNPQ 714


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  514 bits (1323), Expect = e-170
 Identities = 247/409 (60%), Positives = 304/409 (74%)
 Frame = -3

Query: 1238 LWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMVAGKGNVKLFLNGATYVINDV 1059
            +WFLDSGCSNHM GNK  F +L+  F  SVKLGNNS+M V GKGNV+L  NG T V  DV
Sbjct: 17   VWFLDSGCSNHMSGNKQWFTDLNEQFRQSVKLGNNSKMAVMGKGNVRLQANGVTQVFTDV 76

Query: 1058 YHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQSYMSTNRMFPISEEIEAV 879
            Y++P+LKNNLLSIGQLQ+KG++ L ++ +C+++H  KGLI Q+ MS NRMF I     A 
Sbjct: 77   YYIPELKNNLLSIGQLQEKGVTILIRNGMCQIYHPRKGLIMQTKMSANRMFVI----RAN 132

Query: 878  IEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDMVRDLPRFPINKDVCGDCMIG 699
            +   A  C  T  EDN  LWH R GHLS   + TLQ + MV+ LP F ++  +C DCM+G
Sbjct: 133  MLPQASACFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVG 192

Query: 698  KQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRYFISFIDDYSRKGWVYLLTEK 519
            KQ + +IPK S WRA   L+LIHSDICGPI P+S+S  RY ISFIDDYSRK WVY L EK
Sbjct: 193  KQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFLYEK 252

Query: 518  SQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKKFCLEHGIKRQLTTSFSPQQN 339
            SQA  +F+ FK  VE ETG  I+ LRTDRGGE+ S +F  FC  HGI RQLT +++PQQN
Sbjct: 253  SQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTPQQN 312

Query: 338  GVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLNRCPTKALANKTPQEAWSGVK 159
            GVAERKNRT++NMV S+LS K +PK FW EA  WS ++LNR PT A+ + TP+EAWSG+K
Sbjct: 313  GVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSGIK 372

Query: 158  PTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEESKAYRLIDP 12
            P VH+FRV+GCIAHVH+P+ KR KLDDKS+ C+L G+S+ESKAYRL DP
Sbjct: 373  PAVHYFRVFGCIAHVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDP 421


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  515 bits (1326), Expect = e-167
 Identities = 250/433 (57%), Positives = 317/433 (73%), Gaps = 3/433 (0%)
 Frame = -3

Query: 1301 AEINVEESAFM---VDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            AE++ +E   +   V+        +WFLDSGCSNHM GNK  F++L+  F  SVKLGNNS
Sbjct: 272  AELDEKEEMLLMAYVELNNSKMEEVWFLDSGCSNHMSGNKKWFIDLNEQFRQSVKLGNNS 331

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            +M V GKGNV+L  NG T V  DVY++P+LKNNLLSIGQLQ+KG++ L Q+ +C+++H  
Sbjct: 332  KMAVMGKGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVAILIQNGMCQIYHPR 391

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            KGLI Q+ MS NRMF I   +  ++ Q A  C  T  EDN  LWH R GHLS   ++TLQ
Sbjct: 392  KGLIMQTKMSANRMFVI---LANMLPQ-ASACFQTVSEDNTHLWHCRYGHLSFKGLKTLQ 447

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
             ++MV+ LP F +   +C DCM+GKQ + +IPK S WRA   L+LIHSDICGPI P+S++
Sbjct: 448  YRNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNN 507

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
              RY ISFIDDYSRK WVY L EKSQA  +F+ FK  VE ETG  I+ LRTDRGGE+ S 
Sbjct: 508  RKRYLISFIDDYSRKTWVYFLNEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQ 567

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
            +F  FC  HGI RQLT +++PQQNGVAERKNRT++NMV S+LS K +PK FW EA  WS 
Sbjct: 568  EFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSI 627

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            ++LNR PT A+ + TP+EAWSG+KP VH+F+V+GCIAHVH+P+ KR KLD+KS+ C+L G
Sbjct: 628  HILNRSPTLAVKDMTPEEAWSGIKPVVHYFKVFGCIAHVHIPEAKRKKLDNKSYKCVLLG 687

Query: 50   MSEESKAYRLIDP 12
            +SEESKAYRL DP
Sbjct: 688  VSEESKAYRLYDP 700


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  513 bits (1320), Expect = e-166
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 2/427 (0%)
 Frame = -3

Query: 1286 EESAFMVDATGKNKGM--LWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMVAG 1113
            EE   M      N  M  +WFLDSGCSNHM GNK  F +L+  F  SVKLGNNS+M V G
Sbjct: 280  EEMLLMAYVELNNSKMEEVWFLDSGCSNHMSGNKQWFTDLNEQFRQSVKLGNNSKMAVMG 339

Query: 1112 KGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQ 933
            KGNV+L  NG T V  DVY++P+LKNNLLSIGQLQ+KG++ L ++ +C+++H  KGLI Q
Sbjct: 340  KGNVRLQANGVTQVFTDVYYIPELKNNLLSIGQLQEKGVTILIRNGMCQIYHPRKGLIMQ 399

Query: 932  SYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDMVR 753
            + MS NRMF I     A +   A  C  T  EDN  LWH R GHLS   + +LQ + MV+
Sbjct: 400  TKMSANRMFVI----RANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVK 455

Query: 752  DLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRYFI 573
             LP F ++  +C DCM+GKQ + +IPK S WRA   L+LIHSDICGPI P+S+S  RY I
Sbjct: 456  GLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLI 515

Query: 572  SFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKKFC 393
            SFIDDYSRK WVY L EKSQA  +F+ FK  VE ETG  I+ LRTDRGGE+ S +F  FC
Sbjct: 516  SFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFC 575

Query: 392  LEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLNRC 213
              HGI RQLT +++PQQNGVAERKNRT++NMV S+LS K +PK FW EA  WS ++LNR 
Sbjct: 576  STHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRS 635

Query: 212  PTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEESK 33
            PT A+ + TP+EAWSG+KP VH+FRV+GCIAHVH+P+ KR KLDDKS+ C+L G+S+ESK
Sbjct: 636  PTLAVKDMTPEEAWSGIKPAVHYFRVFGCIAHVHIPEAKRKKLDDKSYKCVLLGVSKESK 695

Query: 32   AYRLIDP 12
            AYRL DP
Sbjct: 696  AYRLYDP 702


>gb|PNY01730.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 861

 Score =  498 bits (1283), Expect = e-166
 Identities = 238/432 (55%), Positives = 314/432 (72%), Gaps = 1/432 (0%)
 Frame = -3

Query: 1301 AEINVEESAFMVDATGKN-KGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRM 1125
            AE + EE   ++  T  + K   WFLDSGCS HM GNKD F + D  +  SVKLG++SRM
Sbjct: 267  AEFDDEEEMLLMAKTNDDAKSENWFLDSGCSYHMAGNKDWFYDFDENYRDSVKLGDDSRM 326

Query: 1124 MVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKG 945
             V GKGNVKL +NG  +++ DVY +P LK NLLSIGQ+QQK  + +F++D+CKV+H+EKG
Sbjct: 327  NVMGKGNVKLSINGRVHILTDVYFIPGLKTNLLSIGQIQQKNTTIVFKNDICKVYHREKG 386

Query: 944  LIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKK 765
            L+F +YMSTNRM+ +  E+      +A  C+  S   N++LWH R  HLS   +  L  K
Sbjct: 387  LLFATYMSTNRMYVVKAEV------IAPRCLQASKIVNSQLWHNRYCHLSIKGLNILVIK 440

Query: 764  DMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGN 585
            DMV+ LP      + C +C++GKQ K AIPK + WRA   LEL+HSDICGPI P S+ GN
Sbjct: 441  DMVKGLPALKELDENCVNCLVGKQHKDAIPKQATWRASLKLELVHSDICGPINPKSNGGN 500

Query: 584  RYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDF 405
             YFI+F DD +RK W+YLL EKS +LE F+QFK  VE E+  +I+ LRTDRGGEY+SN F
Sbjct: 501  MYFITFTDDLTRKTWIYLLKEKSSSLEIFKQFKAMVEKESSCSIQCLRTDRGGEYVSNAF 560

Query: 404  KKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYV 225
             +FC  HGIKRQLTT+++PQQNGV+ERKNRT++NMV S+L+ K +PK FW EA  W+ +V
Sbjct: 561  NEFCSNHGIKRQLTTAYTPQQNGVSERKNRTLMNMVRSMLAGKGVPKVFWPEALKWATHV 620

Query: 224  LNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMS 45
            +NR PT ++ + TP+EAWSG+KP+VHHFR++GCIA  H+P  +R+KLDDKS  C+  G+S
Sbjct: 621  MNRSPTLSVKDITPEEAWSGIKPSVHHFRIFGCIAFAHIPDSQRSKLDDKSVKCVHLGLS 680

Query: 44   EESKAYRLIDPQ 9
            EESKAY+L DP+
Sbjct: 681  EESKAYKLYDPE 692


>gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]
          Length = 912

 Score =  491 bits (1263), Expect = e-162
 Identities = 224/412 (54%), Positives = 308/412 (74%)
 Frame = -3

Query: 1247 KGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMVAGKGNVKLFLNGATYVI 1068
            KGM W++DSGCSNHM G K+ F + D  F  SVKLGN+S+M V G+GNVKL ++G  +VI
Sbjct: 288  KGM-WYIDSGCSNHMTGTKEWFFDFDDKFRESVKLGNDSKMTVMGRGNVKLNMDGKIHVI 346

Query: 1067 NDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQSYMSTNRMFPISEEI 888
             +VY++P L NNLLS+GQLQQ+GL+ +F++++C++FH+EKGLI  + M+ N+M+ +   +
Sbjct: 347  TNVYYLPGLSNNLLSVGQLQQRGLTTVFKNNMCQLFHEEKGLILTTKMTFNKMYIVKASM 406

Query: 887  EAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDMVRDLPRFPINKDVCGDC 708
                  +   C+  +  +   LWH+R  HLS   ++TL  K MV+ LP    + D C DC
Sbjct: 407  ------ILPNCLQATALEETTLWHQRYAHLSFQGLKTLITKQMVKGLPNLKESGDKCTDC 460

Query: 707  MIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRYFISFIDDYSRKGWVYLL 528
            ++GKQ + +IPK +NWRA + LEL+HSDICGPI P S+ GNRYFI+FIDD+++K W+Y L
Sbjct: 461  LVGKQHRSSIPKEANWRASKKLELVHSDICGPINPQSNGGNRYFITFIDDFTKKTWIYFL 520

Query: 527  TEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKKFCLEHGIKRQLTTSFSP 348
             +KS A + F++FK  VE E+   I+ LRTDR GEY SN+F +FC  HG+KRQLTT ++P
Sbjct: 521  QKKSSAFDVFKKFKSLVENESSCLIQCLRTDRSGEYTSNEFNEFCKSHGVKRQLTTVYTP 580

Query: 347  QQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLNRCPTKALANKTPQEAWS 168
            QQNGV+ERKNRTV+NMV S++SA+++PKKFW EA  W+ YV+NRCPT A+ N TP+EAWS
Sbjct: 581  QQNGVSERKNRTVLNMVRSMISARSVPKKFWPEAAKWATYVMNRCPTHAVKNVTPEEAWS 640

Query: 167  GVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEESKAYRLIDP 12
            G+KP+VHHFRV+GC+AH H+P   R KLD+KS  C+  G+SEESKAY+L +P
Sbjct: 641  GIKPSVHHFRVFGCLAHAHIPDVHRKKLDNKSIACVFLGVSEESKAYKLYNP 692


>dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subterraneum]
          Length = 847

 Score =  486 bits (1251), Expect = e-161
 Identities = 239/433 (55%), Positives = 303/433 (69%)
 Frame = -3

Query: 1310 LLMAEINVEESAFMVDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            LLMA+  VE +A         +  +WFLDSGCSNHM G K+   + D      VKLG++S
Sbjct: 279  LLMAQHEVETNA---------RDEVWFLDSGCSNHMIGTKEWLYDFDENIRECVKLGDDS 329

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            RM + GKGN+KL + G T VI DVY++P LKNNLLSIGQLQQK L+ +F+ D+CKV+H+E
Sbjct: 330  RMQIKGKGNLKLCIGGLTQVITDVYYIPGLKNNLLSIGQLQQKNLTIVFKKDLCKVYHEE 389

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            KGLI  + MS+NRM+ I   I      +   C  T   DN  LWH R GHLS   + TL 
Sbjct: 390  KGLIMSTKMSSNRMYVIFAPI------IVPMCFKTVKMDNNELWHCRYGHLSFKGLNTLV 443

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
            KK+MV+ LP     +D    C+  KQ + AIPK+SNWRA ++LEL+HSDICGPITP S+ 
Sbjct: 444  KKEMVKGLPHLQDMEDTFVSCLTSKQHREAIPKSSNWRATKLLELVHSDICGPITPQSNG 503

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
            GNRYFI+F DD+SRK W YLL  K+ A + F++FK  VE E+   I  LRTDRGGE+ SN
Sbjct: 504  GNRYFITFTDDFSRKTWTYLLANKACAFDEFKKFKALVEKESNTQIMCLRTDRGGEFTSN 563

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
             F ++C  HGIKRQLTT+++PQQNGV+ERKNRT++NMV S+L  K +PK FW EA  W+ 
Sbjct: 564  AFNEYCSAHGIKRQLTTAYTPQQNGVSERKNRTLLNMVRSMLDGKCVPKTFWPEALKWAT 623

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            YVLNR PT ++ + TP++AWSG KPTV HFRV+GC+A VH+P  +R KLD KS  CIL G
Sbjct: 624  YVLNRSPTLSVKDMTPEKAWSGSKPTVEHFRVFGCVAFVHIPDSQRKKLDSKSIQCILLG 683

Query: 50   MSEESKAYRLIDP 12
            +SEESK Y+L DP
Sbjct: 684  LSEESKGYKLYDP 696


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  487 bits (1254), Expect = e-161
 Identities = 235/427 (55%), Positives = 306/427 (71%), Gaps = 2/427 (0%)
 Frame = -3

Query: 1286 EESAFMVDATGK--NKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMVAG 1113
            EE   M   T +  NK ++W+LDSGCSNHM GNK+   + D  F  SVKLG++SRM V G
Sbjct: 276  EEILLMAQGTDESNNKKVVWYLDSGCSNHMVGNKEWLFDFDDSFRESVKLGDDSRMAVMG 335

Query: 1112 KGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQ 933
            KGN+KL +NG   VI DVY +P LKNNLLSIGQLQQK ++ +F+ D CKVFH + GLI  
Sbjct: 336  KGNLKLNINGMVQVITDVYFLPGLKNNLLSIGQLQQKNVTIIFEKDQCKVFHDKWGLIIT 395

Query: 932  SYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDMVR 753
            S MS NRMF I   I      ++  C+  S +  + LWH R  HLS   + TL KKDMV+
Sbjct: 396  SDMSANRMFIIQASI------ISPMCLKISKDSQSHLWHCRYAHLSFKGLNTLVKKDMVK 449

Query: 752  DLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRYFI 573
             LP      +VC DC  GKQ++ AIPK++NWRA E L+L+HSDICGPI P S+ G+RYFI
Sbjct: 450  GLPTLQETDEVCSDCATGKQSREAIPKSNNWRASEKLQLVHSDICGPINPASNGGSRYFI 509

Query: 572  SFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKKFC 393
            +F DD+SRK W Y L  KS A E F++FK  VE E+   I+ LRTDRGGE+ S++F +FC
Sbjct: 510  TFTDDFSRKTWTYPLAAKSNAFEIFKKFKALVEKESNCNIQTLRTDRGGEFTSHEFNEFC 569

Query: 392  LEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLNRC 213
              +GIKRQLT +++PQQNGV+ERKNRT++NMV S+L+ +N+PK+FW EA +W+ YV+NRC
Sbjct: 570  STNGIKRQLTAAYTPQQNGVSERKNRTLLNMVRSMLNGRNVPKRFWPEAVIWATYVMNRC 629

Query: 212  PTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEESK 33
            PT ++ + TP+EAWS +KP+VH+FRV+GC+A+ HVP   R KLD K+  C+  G+SEESK
Sbjct: 630  PTLSVKDITPEEAWSEIKPSVHYFRVFGCLAYAHVPDVLRKKLDPKASKCVHLGISEESK 689

Query: 32   AYRLIDP 12
            AY+L DP
Sbjct: 690  AYKLYDP 696


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  498 bits (1281), Expect = e-160
 Identities = 239/433 (55%), Positives = 317/433 (73%), Gaps = 3/433 (0%)
 Frame = -3

Query: 1301 AEINVEESAFMV---DATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            AE N  E   ++   DAT   K  +W+LDSGCSNHM GNK+   + D  F  SVKLG++S
Sbjct: 273  AEFNEHEEMLLMTKQDATIHAKTEVWYLDSGCSNHMIGNKEWLFDFDDSFRESVKLGDDS 332

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            +M V GKG +KL++ G T VI++VY++P LKNNLLSIGQLQQK L+ +F++D+CKVFH+E
Sbjct: 333  KMHVMGKGKLKLYIGGITQVISEVYYLPGLKNNLLSIGQLQQKNLTIVFKNDICKVFHEE 392

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            +GLI  + MS NRMF I   +      +   C+ T++E +++LWH+R GHLS   + TL 
Sbjct: 393  RGLIMSTPMSANRMFVIKATV------LVPMCLQTTNEIDSQLWHKRYGHLSYKGLNTLV 446

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
            KK+MVR LP      DVC DC+ GKQ +  IPK  NWRA   LELIHSDICGPI P S+S
Sbjct: 447  KKEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWRATHKLELIHSDICGPINPASNS 506

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
            GN+YFI+F DD++RK WVY+L +K+ A ESF++FK   E E+G  I +LRTDRGGE++S 
Sbjct: 507  GNKYFITFTDDFTRKTWVYILQDKASAFESFKRFKAVAEKESGCQILSLRTDRGGEFMSE 566

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
             F K+C E GIKRQLTT+++PQQNGV+ERKNRT++NMV  +L+ K +PKKFW E+  W+ 
Sbjct: 567  AFNKYCTEQGIKRQLTTAYTPQQNGVSERKNRTIMNMVRCMLNDKKVPKKFWPESVKWAV 626

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            YVLNR PT ++ + TP+EAWS +KP+V HF+++GC+A VHVP  +R KLD+KS  CI  G
Sbjct: 627  YVLNRSPTLSVKDVTPEEAWSSMKPSVKHFKIFGCLAFVHVPDAQRKKLDNKSTKCIHLG 686

Query: 50   MSEESKAYRLIDP 12
            +SEESKAY+L +P
Sbjct: 687  VSEESKAYKLYNP 699


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  498 bits (1283), Expect = e-160
 Identities = 241/436 (55%), Positives = 311/436 (71%), Gaps = 4/436 (0%)
 Frame = -3

Query: 1301 AEINVEESAFM---VDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            AE++ +E   +   V+  G ++  +WFLDSGCSNHMCGNK  F  L+  F  +V+LGNN+
Sbjct: 330  AELDEQEEMLLMAYVENIGASREEIWFLDSGCSNHMCGNKVLFAELNKSFQHTVRLGNNT 389

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            RM V+GKGNVKL +NG   VI DV++VP+LKNNLLSIGQLQ++GL+ L     CK++H +
Sbjct: 390  RMKVSGKGNVKLEVNGVNCVIGDVFYVPELKNNLLSIGQLQERGLAILIHYGKCKIYHPQ 449

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVI-EQVADGCMYTSDEDNARLWHERMGHLSNTSMETL 774
            KGLI QS M+ NRMF +   IE  + +   + C  T+ +D   LWH R+GH+SNT ++TL
Sbjct: 450  KGLIIQSEMTANRMFVLVARIEPTLSDSNQEICFNTTTQDLTHLWHCRLGHISNTGLQTL 509

Query: 773  QKKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSH 594
            Q+K MV  LP+ P    VC DC+ GKQ +  IPK S WRA + LELIH+D+CGPI+P+S+
Sbjct: 510  QRKKMVHGLPQLPALDVVCVDCLKGKQHREPIPKRSTWRATQRLELIHADLCGPISPISN 569

Query: 593  SGNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLS 414
            SG +Y +  IDDYSRK W Y L EKS+    F+ FK  VE ET   IK LRTDRGGE+ S
Sbjct: 570  SGKKYVLCLIDDYSRKAWSYFLNEKSETFAVFKFFKILVEKETSLAIKCLRTDRGGEFTS 629

Query: 413  NDFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWS 234
             +F  FC E+GI+RQLTT+++PQQNGVAERKNRTV+N V  +L  K +PK FW EA  W+
Sbjct: 630  AEFNSFCKENGIRRQLTTAYTPQQNGVAERKNRTVMNSVRCMLFEKGIPKPFWPEAVKWT 689

Query: 233  FYVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILT 54
             YVLNRCPT AL + TP+E WSGVKP+V H RV+GC+ HVHVP  KRTKL++KS   +  
Sbjct: 690  VYVLNRCPTVALKDTTPEEVWSGVKPSVEHLRVFGCVCHVHVPDVKRTKLENKSTSGVFL 749

Query: 53   GMSEESKAYRLIDPQT 6
            G+S+ESK YR+ DP T
Sbjct: 750  GISDESKGYRIYDPLT 765


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  509 bits (1310), Expect = e-160
 Identities = 238/427 (55%), Positives = 312/427 (73%), Gaps = 2/427 (0%)
 Frame = -3

Query: 1286 EESAFM--VDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMVAG 1113
            EE   M  VD  G ++ ++W++DSGCSNHMCG+   F  L+ GF   V+LGN + M V G
Sbjct: 276  EEMVLMAYVDTFGGDRDVVWYIDSGCSNHMCGDSSLFCELEEGFNKVVRLGNYASMNVVG 335

Query: 1112 KGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQ 933
            KG+V+L + G  Y++ DVY+VP LKNNLLS+GQLQ++GL+ L QS+ C+++H  KGL+FQ
Sbjct: 336  KGSVRLNVKGVNYLVRDVYYVPGLKNNLLSVGQLQERGLAVLMQSNECRIYHHTKGLVFQ 395

Query: 932  SYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDMVR 753
            + M+ NRMF +    +++ ++  + C   + +D A LWH R GHLS   ++TLQ K+MVR
Sbjct: 396  TNMTANRMFVLLSSTQSIKKENKEECFQVTTDDVAHLWHRRFGHLSYKGLKTLQTKNMVR 455

Query: 752  DLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRYFI 573
             LP F + + VC +C+ GKQ +  I + S WRA E LEL+H+DICGPI+P S    RYFI
Sbjct: 456  GLPSFSVGEIVCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFI 515

Query: 572  SFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKKFC 393
             FIDDYSRK WVY L  KS A  +F+ FK  VE ETG +IK LRTDRGGE+ SN+FK++C
Sbjct: 516  CFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYC 575

Query: 392  LEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLNRC 213
              +GIKRQLT +++PQQNGVAERKNRTV+NMV S+L  KN+P+KFW EA  W+FYVLNRC
Sbjct: 576  KMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRC 635

Query: 212  PTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEESK 33
            PT ++   TP EAW G+KP+V H RV+GCIA+ HVP  +RTKL+DKS  C+L G+SEESK
Sbjct: 636  PTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESK 695

Query: 32   AYRLIDP 12
            AYRL DP
Sbjct: 696  AYRLYDP 702


>dbj|GAU15733.1| hypothetical protein TSUD_235460 [Trifolium subterraneum]
          Length = 1067

 Score =  489 bits (1258), Expect = e-160
 Identities = 229/433 (52%), Positives = 310/433 (71%), Gaps = 3/433 (0%)
 Frame = -3

Query: 1301 AEINVEESAFMV---DATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            AE + EE   ++   D  G  K   W++DSGCSNHM GNKD   + D  F  SV+LGN++
Sbjct: 266  AEFDYEEETLLMARTDQDGVIKEETWYVDSGCSNHMIGNKDWLYDFDPSFRDSVRLGNDA 325

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            +M V GKGNVKLF+NG+ +VI++VY++P L  NLLS+GQLQQK ++ +F++D C+ +H E
Sbjct: 326  KMSVMGKGNVKLFMNGSVHVISNVYYLPGLNTNLLSVGQLQQKSVTVIFKNDTCRAYHDE 385

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            KGLIF + MS NRM+ ++  +   +      C+ TS+ED  +LWH R GHLS   ++ L 
Sbjct: 386  KGLIFSTQMSANRMYTLTAPVMIPM------CLQTSNEDQTQLWHNRYGHLSVNGLKLLS 439

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
             KDMV+ LP      + C DC+IGKQ +  IPK + WRA   L+LIHSDICGPI P S+ 
Sbjct: 440  SKDMVKGLPAIREMSERCIDCLIGKQQREVIPKQAKWRANTKLQLIHSDICGPINPCSNG 499

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
            G RYF++  DD+SRK WVY+L EKS+A E+F+ FK  VE E+G  I+ LRTDRGGE+ SN
Sbjct: 500  GKRYFLTLTDDFSRKTWVYVLKEKSEAFETFKNFKALVEIESGCVIQMLRTDRGGEFTSN 559

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
             F +FC   GIKRQLTT+++PQQNGV+ERKNRT++N+V S+L+ +N+PK FW EA  W+ 
Sbjct: 560  VFNEFCKTKGIKRQLTTAYTPQQNGVSERKNRTLLNIVRSVLACRNVPKSFWPEALKWAA 619

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            YV+NR PT ++ + TP+EAWSGVKP+V HFR + C+A+ HVP   R KLD+KS  C+L G
Sbjct: 620  YVMNRSPTSSVRDMTPEEAWSGVKPSVKHFRTFDCLAYAHVPDSHRKKLDNKSIKCVLLG 679

Query: 50   MSEESKAYRLIDP 12
            +S+ESKAY+L +P
Sbjct: 680  ISDESKAYKLYNP 692


>gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]
          Length = 1172

 Score =  491 bits (1265), Expect = e-160
 Identities = 230/414 (55%), Positives = 309/414 (74%)
 Frame = -3

Query: 1247 KGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMVAGKGNVKLFLNGATYVI 1068
            K  +W+LDSGC NHMCG K+ F +LD+ F  +V+L +NS+M V GKGNVKL LNG T +I
Sbjct: 285  KKQIWYLDSGCINHMCGVKEWFHDLDMNFKETVRLRDNSQMSVVGKGNVKLQLNGFTQII 344

Query: 1067 NDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQSYMSTNRMFPISEEI 888
             DVY++P+LKNNLLSIGQLQ K L+ +F+ + CKV+HQ+KG+I  S M++N+++PI  E 
Sbjct: 345  TDVYYIPELKNNLLSIGQLQLKDLTIVFKRNWCKVYHQDKGMIMSSQMASNKLYPIFAEA 404

Query: 887  EAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDMVRDLPRFPINKDVCGDC 708
            +         C  T  ED + LWH R GHL+   ++TLQ+K+MV+DLP+   +  +C +C
Sbjct: 405  KVA-------CFQTKSEDISYLWHCRYGHLNFKGLQTLQQKNMVKDLPKIEESDHMCTNC 457

Query: 707  MIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRYFISFIDDYSRKGWVYLL 528
            ++GKQ + +IPKTSN ++ + LEL+HSDICGPITP S+S NRYF++FIDDYSRK W Y L
Sbjct: 458  LVGKQHRESIPKTSNLKSSKRLELVHSDICGPITPASNSDNRYFLTFIDDYSRKTWAYFL 517

Query: 527  TEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKKFCLEHGIKRQLTTSFSP 348
              KS ALE F++FK  VE ETG++I  LRTDRGGE+ SN+F  FC  +GIKRQ+T +++P
Sbjct: 518  KNKSSALEYFKKFKNMVEKETGESICCLRTDRGGEFNSNEFNNFCEVNGIKRQVTAAYTP 577

Query: 347  QQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLNRCPTKALANKTPQEAWS 168
            QQNG+A+RKNRT+++MV S++S K++PK FW EA  W+ YVLNR P  A+ + TP+E WS
Sbjct: 578  QQNGIAKRKNRTIMDMVRSMISGKDIPKVFWPEAVNWAIYVLNRSPAAAIPDVTPEEFWS 637

Query: 167  GVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEESKAYRLIDPQT 6
              KPTV HFR++GCIA+ HVP  +R K DDKS  CI  G+S+ESKAYRL +P T
Sbjct: 638  SSKPTVKHFRIFGCIAYTHVPDAQRRKFDDKSVKCIFLGISKESKAYRLYNPMT 691


>gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 803

 Score =  481 bits (1237), Expect = e-160
 Identities = 231/433 (53%), Positives = 304/433 (70%), Gaps = 3/433 (0%)
 Frame = -3

Query: 1301 AEINVEESAFMVDATGKN---KGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            AE   EE   ++  +  N   K   W+LDSGCSNHM G KD   +LD  F  SVKLGN+S
Sbjct: 31   AEFETEEEMLLMAYSQLNIERKDQAWYLDSGCSNHMIGTKDWLFDLDETFRESVKLGNDS 90

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            +M V GKGN++L + G   +I DVY++P L NNLLSIGQLQQKGL+ +F+++VC++FH++
Sbjct: 91   KMAVMGKGNLRLDIGGRIIIITDVYYLPGLGNNLLSIGQLQQKGLTIVFKNNVCQLFHED 150

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            KGLI  + M+ NRM+ +   +      +   C+  +  +   LWH+R  HLS   +  L 
Sbjct: 151  KGLILSTEMTMNRMYIVRATV------IIPNCLQVTKAEETELWHKRYAHLSIKGLRVLN 204

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
            KK MV+ LP     ++ C DC+ GKQ +  +PK +NWRA EILELIHSDICGPITP S+ 
Sbjct: 205  KKHMVKGLPELRDTEEKCTDCLSGKQHRENMPKQANWRASEILELIHSDICGPITPKSNG 264

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
            GNRYF++F DD+SRK W Y++ EKS AL  F++FK  VE E+   IK LRTDRGGE+ S 
Sbjct: 265  GNRYFLTFTDDFSRKTWTYIIQEKSCALSVFKKFKSLVENESNCLIKCLRTDRGGEFTSL 324

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
            +F  FC   GIKRQLT +++PQQNGVAERKNRT++NMV S++S + +PK FW EA  W+ 
Sbjct: 325  EFNNFCSSQGIKRQLTAAYTPQQNGVAERKNRTILNMVRSMISCRGVPKCFWPEAVKWAT 384

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            YV+NR PT A+ + TP+EA+SGVKP+VHHFR++GC+AHVH+P   R KLD KS  CI  G
Sbjct: 385  YVMNRSPTFAVKDITPEEAYSGVKPSVHHFRIFGCLAHVHIPDAHRKKLDGKSTKCIHLG 444

Query: 50   MSEESKAYRLIDP 12
            +SEESKAY+L DP
Sbjct: 445  VSEESKAYKLYDP 457


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  494 bits (1273), Expect = e-159
 Identities = 240/433 (55%), Positives = 310/433 (71%)
 Frame = -3

Query: 1310 LLMAEINVEESAFMVDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            LLMA+  +E  A         +  +WFLDSGCSNHM G ++   + D     SVKLG++S
Sbjct: 275  LLMAKHGIETDA---------RDEVWFLDSGCSNHMVGTREWLFDFDDNIRESVKLGDDS 325

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
            RM + GKGN+KL + G T VI+DVY++P LKNNLLSIGQLQQK L+ +F+ D CKV+H +
Sbjct: 326  RMQILGKGNLKLCIGGITQVISDVYYIPGLKNNLLSIGQLQQKDLTIVFKQDFCKVYHPQ 385

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            +GLI  + MS NRM+ I   +      +   C+ T   DN  LWH R GHLS   + TL 
Sbjct: 386  RGLIMATKMSANRMYIIYAPV------IIPMCLKTVKMDNNELWHCRYGHLSFKGLNTLV 439

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
            KKDMVR LP+     + C +CM GKQ + AIPK+SNWRA + LEL+HSDICGPITP S+ 
Sbjct: 440  KKDMVRGLPQLQETTENCTNCMTGKQHREAIPKSSNWRASKKLELVHSDICGPITPQSNG 499

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
            G RYF++F DD+SRK W YLL++K+ A + F++FK  VE E+   I  LRTDRGGE+ SN
Sbjct: 500  GIRYFMTFTDDFSRKTWTYLLSDKASAFDVFKKFKVLVEKESNCQIMCLRTDRGGEFTSN 559

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
            +F +FC  HGIKRQLTT+++PQQNGV+ERKNRT++NM+ S+++ +N+PK FW EA  WS 
Sbjct: 560  NFNEFCSNHGIKRQLTTAYTPQQNGVSERKNRTLLNMIRSMMAGRNVPKSFWPEALKWST 619

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            YVLNR PT A+ + TP+EAWSG KPTVHHFR++GC+A+VH+P   R KLDDKS  CIL G
Sbjct: 620  YVLNRSPTLAVKDITPEEAWSGSKPTVHHFRIFGCLAYVHIPDFNRKKLDDKSIKCILLG 679

Query: 50   MSEESKAYRLIDP 12
            +SEESK Y+L DP
Sbjct: 680  LSEESKGYKLYDP 692


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  491 bits (1264), Expect = e-159
 Identities = 235/432 (54%), Positives = 310/432 (71%), Gaps = 2/432 (0%)
 Frame = -3

Query: 1301 AEINVEESAFMV--DATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSR 1128
            AE +  E   M+  + +  N   +WFLDSGCSNHM G K+   + D  F  +VKLG+NS 
Sbjct: 251  AEFDEHEEMLMMAQNQSNVNTNQVWFLDSGCSNHMIGTKEWLFDFDDTFRETVKLGDNST 310

Query: 1127 MMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEK 948
            M V GKGNVK+ L G   VI DVY++P+L+NNLLSIGQLQQK L+ +F  D CK+FH+E+
Sbjct: 311  MSVMGKGNVKISLQGKISVITDVYYLPNLRNNLLSIGQLQQKNLTIVFSKDTCKIFHEER 370

Query: 947  GLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQK 768
            GLI  + M+ NRM+ +      +   +   C+ T+ +    LWH R GHLS   + TL K
Sbjct: 371  GLIVSTPMTVNRMYIL------LCPVITPSCLKTAHDSEGSLWHHRYGHLSFKGLHTLAK 424

Query: 767  KDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSG 588
            KDMV  LP    ++++C DC+I KQ + +IPKTS+WRA E LEL+HSDICGPITP S+ G
Sbjct: 425  KDMVNGLPLLQESQELCSDCVISKQHRDSIPKTSSWRATEKLELVHSDICGPITPTSNGG 484

Query: 587  NRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSND 408
             RYFI+F DDYSRK W Y L EKS AL  F++FK  VE E+ ++IK LRTDRGGE+LS+ 
Sbjct: 485  CRYFITFTDDYSRKTWTYPLKEKSSALAVFKRFKALVENESNQSIKCLRTDRGGEFLSDT 544

Query: 407  FKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFY 228
            F +FC E+GIKRQLTT+++PQQNGV+ERKNRT++N+V S+L+ +N+PK+FW EA +W+ Y
Sbjct: 545  FNEFCSEYGIKRQLTTAYTPQQNGVSERKNRTLMNVVRSMLNGRNVPKRFWPEAVVWATY 604

Query: 227  VLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGM 48
            V+NR PT ++ N TP+EAW G KP+V  F+V+GC+ +VHVP  KR KLD K   C+L G+
Sbjct: 605  VINRSPTLSVKNMTPEEAWRGTKPSVSFFKVFGCLGYVHVPDVKRKKLDAKGIKCVLLGV 664

Query: 47   SEESKAYRLIDP 12
            SEESKAY+L DP
Sbjct: 665  SEESKAYKLYDP 676


>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  509 bits (1311), Expect = e-159
 Identities = 248/429 (57%), Positives = 313/429 (72%), Gaps = 2/429 (0%)
 Frame = -3

Query: 1292 NVEESAFM--VDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNSRMMV 1119
            N EE   M  VD    ++   WFLDSGCSNHMCG KD F + D  F  SVKLGNN+ M V
Sbjct: 299  NQEEMLLMAYVDLNKTSREDTWFLDSGCSNHMCGKKDYFSDFDGTFRDSVKLGNNTSMSV 358

Query: 1118 AGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQEKGLI 939
             GKGNV+L +N  T +I  V++VP+LKNNLLSIGQLQ+KGL+ LFQ   CKVFH +KGLI
Sbjct: 359  LGKGNVRLKVNEMTQIITGVFYVPELKNNLLSIGQLQEKGLTILFQHGKCKVFHSQKGLI 418

Query: 938  FQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQKKDM 759
              + MS+NRMF +     A+ + ++  C  T  ED  +LWH R GHLS   ++TLQ++ M
Sbjct: 419  MDTKMSSNRMFMLY----ALSQPISSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKM 474

Query: 758  VRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHSGNRY 579
            V  LP+F     +C DC++GKQ + +IPK SNWRA EIL+L+H+DICGPI P+S+S  RY
Sbjct: 475  VNGLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEILQLVHADICGPINPISNSKKRY 534

Query: 578  FISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSNDFKK 399
             ++F DD+SRK WVY L EKS+A   F+ FK  VE ET   ++ LRTDRGGE+ S +F  
Sbjct: 535  LLTFTDDFSRKTWVYFLVEKSEAFAVFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAI 594

Query: 398  FCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSFYVLN 219
            FC  HGI+RQLT +++PQQNGVAERKNRT++NMV S+LSAK +PK FW EA  W+ +VLN
Sbjct: 595  FCDVHGIRRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSAKKLPKTFWPEAVNWTVHVLN 654

Query: 218  RCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTGMSEE 39
            R PT A+ NKTP+EAW  +KP+V +FRV+GC++HVHVP  KRTKLDDKSF C+L G+SEE
Sbjct: 655  RSPTFAVQNKTPEEAWGKLKPSVDYFRVFGCLSHVHVPDSKRTKLDDKSFSCVLLGVSEE 714

Query: 38   SKAYRLIDP 12
            SKAYRL DP
Sbjct: 715  SKAYRLYDP 723


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 551

 Score =  469 bits (1207), Expect = e-158
 Identities = 229/401 (57%), Positives = 290/401 (72%), Gaps = 1/401 (0%)
 Frame = -3

Query: 1205 MCGNKDRFVNLDLGFTTSVKLGNNSRMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLL 1026
            MCGN+  F  +D  F   VKLGNN+RM V GKG+V+L + G T++I DV+ VP+LKNNLL
Sbjct: 1    MCGNRAWFKEVDDTFKQHVKLGNNTRMEVTGKGSVRLNIKGVTHIITDVFLVPELKNNLL 60

Query: 1025 SIGQLQQKGLSFLFQSDVCKVFHQEKGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYT 846
            SIGQLQ+KGL+ +FQS  CK++H +KGLI ++ M+TNRMF +  +         D C + 
Sbjct: 61   SIGQLQEKGLTVMFQSGTCKLYHPDKGLILETNMTTNRMFILFAQSATK----KDSCFHI 116

Query: 845  SDEDNARLWHERMGHLSNTSMETLQKKDMVRDLPR-FPINKDVCGDCMIGKQTKVAIPKT 669
            S +D + LWH R  HLS+  +  LQ K MVR LP      + VC DCM GKQ +  IPK 
Sbjct: 117  STQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKVCEDCMKGKQHRDPIPKK 176

Query: 668  SNWRAGEILELIHSDICGPITPVSHSGNRYFISFIDDYSRKGWVYLLTEKSQALESFRQF 489
            S WRA + LELIH+DICGPI P S+S  RYF+ FIDDY+RK W+Y LTEKS+A   F+ F
Sbjct: 177  SQWRAKQKLELIHADICGPIIPSSNSQKRYFLCFIDDYTRKAWIYFLTEKSEAFHYFQCF 236

Query: 488  KGKVETETGKTIKALRTDRGGEYLSNDFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTV 309
            K  VE E+G  IK LRTDRGGE+ S++F +FC + GIKRQLTT+++PQQNGVAERKNRT+
Sbjct: 237  KNLVEKESGLMIKCLRTDRGGEFTSSEFNEFCQKTGIKRQLTTAYTPQQNGVAERKNRTI 296

Query: 308  INMVVSILSAKNMPKKFWGEATMWSFYVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWG 129
            +N+V ++LS K +PK FW EA  W  YVLNR PT  + N+TP+EAWSGVKP+V HFRV+G
Sbjct: 297  MNLVRTLLSEKKLPKSFWPEAVNWVAYVLNRSPTLVVKNQTPEEAWSGVKPSVEHFRVFG 356

Query: 128  CIAHVHVPKEKRTKLDDKSFVCILTGMSEESKAYRLIDPQT 6
            C+ HVHVP   RTKL++KS  C+L GMSEESK YRL +P T
Sbjct: 357  CVTHVHVPDAGRTKLENKSCKCVLLGMSEESKGYRLYNPIT 397


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 930

 Score =  481 bits (1238), Expect = e-158
 Identities = 236/433 (54%), Positives = 305/433 (70%)
 Frame = -3

Query: 1310 LLMAEINVEESAFMVDATGKNKGMLWFLDSGCSNHMCGNKDRFVNLDLGFTTSVKLGNNS 1131
            LLMA +  +E         + K  +WFLDS CSNHMCG K+ F  LD  F+ SVKLGNNS
Sbjct: 259  LLMAYVETKE---------QQKTDVWFLDSRCSNHMCGKKEYFSELDETFSDSVKLGNNS 309

Query: 1130 RMMVAGKGNVKLFLNGATYVINDVYHVPDLKNNLLSIGQLQQKGLSFLFQSDVCKVFHQE 951
             M+V GKGN++L +NG   +I+  ++VP+LKNNLL +GQLQ+KGLS LFQ   CK++H +
Sbjct: 310  NMVVNGKGNIRLDVNGVISIISGGFYVPELKNNLLGLGQLQEKGLSILFQQGKCKIYHPD 369

Query: 950  KGLIFQSYMSTNRMFPISEEIEAVIEQVADGCMYTSDEDNARLWHERMGHLSNTSMETLQ 771
            KGLI QS MS+NRMF +     A+   VA  C  T  ED A+LWH R GHLS   ++TLQ
Sbjct: 370  KGLIMQSNMSSNRMFIL----HAISLPVAPTCFNTVTEDVAQLWHCRFGHLSFKGLQTLQ 425

Query: 770  KKDMVRDLPRFPINKDVCGDCMIGKQTKVAIPKTSNWRAGEILELIHSDICGPITPVSHS 591
            +K MV  L        +C D +IGKQ + + P  S+WRA +IL+L+H+DICGPI PVS+S
Sbjct: 426  QKGMVEGLAMLKPPSKLCKDYLIGKQHRDSFPMKSSWRASQILQLVHADICGPIKPVSNS 485

Query: 590  GNRYFISFIDDYSRKGWVYLLTEKSQALESFRQFKGKVETETGKTIKALRTDRGGEYLSN 411
              RY ++FIDD+SRK WVY L EKS+A   F+ FK  VE  T  ++K LRTD GGE+ S 
Sbjct: 486  KKRYLLTFIDDFSRKTWVYFLAEKSEAFTVFKSFKLHVEKATNMSLKGLRTDLGGEFTSR 545

Query: 410  DFKKFCLEHGIKRQLTTSFSPQQNGVAERKNRTVINMVVSILSAKNMPKKFWGEATMWSF 231
            +F  F   HG++RQLT ++SPQQNGVAERKNRT++N+V S+LS K +PK FW EA  W+ 
Sbjct: 546  EFNNFFHAHGVQRQLTAAYSPQQNGVAERKNRTIMNLVRSMLSEKKVPKTFWPEAVNWAV 605

Query: 230  YVLNRCPTKALANKTPQEAWSGVKPTVHHFRVWGCIAHVHVPKEKRTKLDDKSFVCILTG 51
            +VLN CPT A+  KTP+EAWSG+KP+V HFRV+GC+++ HVP   R+KLD KS  C+L G
Sbjct: 606  HVLNHCPTLAVKEKTPEEAWSGIKPSVQHFRVFGCVSYAHVPDNLRSKLDAKSLKCVLLG 665

Query: 50   MSEESKAYRLIDP 12
            +S+ESKAYRL DP
Sbjct: 666  ISDESKAYRLYDP 678