BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00032563
         (3327 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AUW36419.1| RNA-dependent RNA polymerase [Black currant nucle...   562   e-170
ref|YP_009176977.1| RNA-dependent RNA polymerase [Datura yellow ...   549   e-166
gb|AGN91973.1| polymerase [Citrus leprosis virus nuclear type]        546   e-166
gb|ARJ35822.1| RNA-dependent RNA polymerase [Citrus leprosis vir...   545   e-165
gb|AQN78378.1| RNA-dependent RNA polymerase [Citrus leprosis vir...   545   e-165
gb|AQN78377.1| RNA-dependent RNA polymerase [Citrus leprosis vir...   544   e-165
gb|AQN78376.1| RNA-dependent RNA polymerase [Citrus leprosis vir...   544   e-165
ref|YP_001294929.1| polymerase [Orchid fleck dichorhavirus] >gi|...   543   e-165
dbj|BAX37191.1| polymerase [Orchid fleck dichorhavirus]               543   e-164
gb|ARJ35804.1| RNA-dependent RNA polymerase [Citrus chlorotic sp...   540   e-163
dbj|BAH97108.1| polymerase [Orchid fleck dichorhavirus]               539   e-163
gb|AHH44830.1| RNA-dependent RNA polymerase [Coffee ringspot dic...   534   e-161
ref|NP_042286.1| polymerase [Sonchus yellow net nucleorhabdoviru...   532   e-159
ref|YP_052849.1| L [Maize fine streak nucleorhabdovirus] >gi|494...   521   e-156
gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdov...   492   e-145
ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru...   492   e-145
ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect v...   489   e-144
ref|YP_009362280.1| RNA-dependent RNA polymerase [Colocasia bobo...   481   e-142
ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect v...   481   e-141
gb|ARJ54297.1| RNA-dependent RNA polymerase [Potato yellow dwarf...   472   e-139

>gb|AUW36419.1| RNA-dependent RNA polymerase [Black currant nucleorhabdovirus 1]
          Length = 2106

 Score =  562 bits (1448), Expect = e-170
 Identities = 355/1014 (35%), Positives = 551/1014 (54%), Gaps = 62/1014 (6%)
 Frame = -1

Query: 2859 YHIKYLQKAVYVYNYLLSKRLGDEDMKLSYIR-NITSGRGHINSDNTVVIYSYDDDRW-V 2686
            Y + YL  ++ V N++ S    D  ++L  I   I+ G           +Y    +++ +
Sbjct: 167  YLVCYLNFSLVVLNHMSSPDRPDSTVELPDICCKISDG-----------VYRVSFNKYLI 215

Query: 2685 MYITRELIGWKHDGLLRITTPAILLNLCDKVQERFNIQMITDIG-------SKVSPLIYP 2527
            + IT + +  +     +I    I L +CDK+ ERFN    T IG       SKV P+   
Sbjct: 216  LEITGQCVRIRTPVYDQILQKDIFLTICDKINERFN----TIIGAYSITCESKVLPVAID 271

Query: 2526 TWQD-----TKKIIAWGDKVIXXXXXXXXXXXXXLESIMISRIIKSEDDG-FDQGRFQNN 2365
             +        ++II +GD ++              E+  +S I+  ++   +D   FQ N
Sbjct: 272  YFDTEMHYLVRRIIDYGDSLVYKHRNRAFDLLGKFEAYCVSAILTKDNPTIWDCMEFQRN 331

Query: 2364 IIQDILED--GIYFDPYIKELLQLIQNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDL 2191
            +++D   +   +Y D    +L +++ + S   +A++HGL+R+WGHP +D + GMKK+   
Sbjct: 332  LLEDDRREQPDLYDDAL--QLCKILNSYSEQQLAEVHGLWRIWGHPIIDLVGGMKKMEAT 389

Query: 2190 LHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPPYSCPK---YDEIKD--AKIRKAHV 2026
              +K NVD++    C  TF+  FF NYY+KHG YP  +      Y++  D  +   K   
Sbjct: 390  CLKKTNVDKKETKICEYTFKSTFFANYYEKHGHYPLSNMASEVTYNQYSDFLSTRDKEDY 449

Query: 2025 YIVSK-------LESC-QEIDILSPY---YNRCGWSHITINKCFPLPTGLNIASFLKDRA 1879
            +I SK       L  C QE    +P+   YN   W  + + + F +P  LN+A+ +KD+A
Sbjct: 450  HISSKKYNKDKYLHMCLQEEKRFTPHHFLYNHSDWEDVVVLQNFQVPQSLNLATMIKDKA 509

Query: 1878 VSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLPDDDCTIG 1699
            +S +R++LI  V     V DP KRRGVL WL+ Q   +   L  I+  A  L +D   IG
Sbjct: 510  ISMTRSELISAVRERNSVFDPLKRRGVLKWLSEQSCRVKDYLLGID--ANSLDEDSRIIG 567

Query: 1698 LYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQIQQKFVSL 1519
            LYPKERELK +AR F+LMSY MR++  TTEE+L  ++LPYFP I M+D  L +  +  ++
Sbjct: 568  LYPKERELKTKARFFSLMSYNMRMFITTTEELLGKYLLPYFPMITMSDTLLSMIIRLYNM 627

Query: 1518 TTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRTYDIFKNSY 1339
            TT +    D+ VTY +NIDF KWNQ MR     GVF ++ R+ G   L +RT++IF+ SY
Sbjct: 628  TTNIGAG-DSKVTYSMNIDFSKWNQNMREATNDGVFQNIDRVLGFRRLISRTHEIFRQSY 686

Query: 1338 VYLCNGTYLPRVVNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNICKEHSLTFK 1159
            +YLC+G Y+P +  G+L A+ P S +GD+ GKEGLRQKGWTI +  D+ ++   H ++ +
Sbjct: 687  LYLCSGEYIPILSYGRLTAESPYSRQGDESGKEGLRQKGWTITTVCDILSLAFLHKVSIE 746

Query: 1158 IIGGGDNQVLIITM-------PKGPN-GLAGTHNRMERFLSDLDEKMKKRGLPLKIGETW 1003
            +IGGGDNQVL +T+        + P+  L     RM RF + L +KM KRGLPLK+ ETW
Sbjct: 747  LIGGGDNQVLTVTITSLKKHSKESPDIQLLNIRERMLRFRNALAKKMDKRGLPLKLEETW 806

Query: 1002 VSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVSYQSIISKDHS 823
            +S  L  YNK M   GV L   LK+ SR F  SN  + T+  +  TL   +QS+ +KDH+
Sbjct: 807  ISHRLLMYNKIMYLDGVPLKGRLKVVSRLFSNSNEGIATLGGVMSTLGTGFQSLSAKDHT 866

Query: 822  CLVGWIFSRLNAAYYLKALWEHHPFLGQS--IPEILTNQVQLS------GMSHKTTFKNQ 667
             +  W  SR+   + +   +  +P  G +    +ILT+   L+      G  +    K +
Sbjct: 867  PIFAWQMSRVILLFNICQFYLFNPICGSTRLDQQILTSVDNLNKGKGIFGSCYTDPQKKK 926

Query: 666  ------------LTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLY-LM 526
                        L++  L+++ L + ++LGG G    +SY+ +GFPD LSE LS+ Y +M
Sbjct: 927  VKIQLDFSGDSTLSVQELFFICLYYHKILGGPGIGTPYSYIMKGFPDPLSEALSFNYSVM 986

Query: 525  RKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESD 346
            +  +  D + +I  I    K ++  +  LLEDP S++ ++   G  ALR  AE  +  +D
Sbjct: 987  KNCTRIDQREMIRCITLVEKSNVQHWEHLLEDPVSINHNAPAHGIAALRTQAEIIMKSAD 1046

Query: 345  KIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKST 166
             I+NK FKE + L   + +  ++  LCS   + PR LHDI+GSTI GY+N+I++K+D+ST
Sbjct: 1047 -IKNKQFKEPINLGDNEYLRSLSSQLCSPPELEPRLLHDIVGSTIPGYVNTILSKVDQST 1105

Query: 165  TINKLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            T+NKL    +VIE +  +E  +  Y   ++    G +   CP+  +   RN +W
Sbjct: 1106 TLNKLAVASDVIENVYTSEIQYYVYLSKKVKRPIGHEMTTCPSYDSRHLRNYTW 1159


>ref|YP_009176977.1| RNA-dependent RNA polymerase [Datura yellow vein nucleorhabdovirus]
 gb|AKH61406.1| RNA-dependent RNA polymerase [Datura yellow vein nucleorhabdovirus]
          Length = 2106

 Score =  549 bits (1415), Expect = e-166
 Identities = 331/944 (35%), Positives = 509/944 (53%), Gaps = 65/944 (6%)
 Frame = -1

Query: 2640 LRITTPA--------ILLNLCDKVQERFNIQMITDIGSKVSPLIYPTWQDTK-------- 2509
            +R+ TPA          LNLCDK+ ER N+ +   +  K+S +I  T    +        
Sbjct: 221  VRVRTPAYDQIMQTDFYLNLCDKINERLNVSIGASLVQKLS-IIRGTGNPDECNMTAIVT 279

Query: 2508 KIIAWGDKVIXXXXXXXXXXXXXLESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIY 2332
            +II WGD+++              E+  +S I+  +D+  + +  FQ N++ D  ++   
Sbjct: 280  RIIGWGDRLLYRLKNRAYDLIGKYEAYCVSSILMYDDEEIWMKDEFQRNLLVDDEDNAPD 339

Query: 2331 FDPYIKELLQLIQNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEI 2152
               Y +EL   +   S   +A++HGL+R+WGHP +D   G+KK+     ++ N+D +   
Sbjct: 340  LYLYARELCAELNQLSPIALAEVHGLWRIWGHPIIDLEGGLKKMETTCLKRHNIDTKETK 399

Query: 2151 DCNMTFREVFFVNYYQKHGFYPPYSCPKYDEI---------KDAK-IRKAHV------YI 2020
                TF+ +F +NYY+KH  YP  +    D +         +DA+ I +  V      Y+
Sbjct: 400  TGERTFKSIFAINYYKKHHHYPLCNMTSRDMMNLYWEHLTERDAEEINRDRVEDVGRCYL 459

Query: 2019 VSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNIASFLKDRAVSPSRTDLIHMVV 1840
               +   + ID     Y+   W  I   + F  P  +N+A+ +KD+A+S +R++L+  V+
Sbjct: 460  FRCIRDNRPIDDRVSGYSHSDWDRIIFYQNFQTPHSVNLATMIKDKAISQTRSELVSSVL 519

Query: 1839 NNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLPDDDCTIGLYPKERELKLQAR 1660
                V D  KRRGVL WL+ Q + +   L  ++    GL +DD  IGLYPKERELK +AR
Sbjct: 520  TRNSVFDSTKRRGVLKWLSEQTLRLKNYLIGVD--TNGLAEDDRIIGLYPKERELKTKAR 577

Query: 1659 MFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQIQQKFVSLTTPMAKDHDTHVT 1480
             F+LMSY MR+Y   TEE+L  ++LPYFP I M+D  L +  +  ++TT +    D+ VT
Sbjct: 578  FFSLMSYNMRMYVTATEEILGKYLLPYFPMITMSDTLLSMIIRLFNMTTNIGAT-DSSVT 636

Query: 1479 YIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRTYDIFKNSYVYLCNGTYLPRVV 1300
            Y +NIDF KWNQ MR      VF ++ R+ G   L +RT++IF+ SY+YLC+G Y+P ++
Sbjct: 637  YSMNIDFSKWNQNMREQTNDLVFQNIDRVVGFRRLISRTHEIFRTSYLYLCSGEYIPAII 696

Query: 1299 NGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNICKEHSLTFKIIGGGDNQVLIIT 1120
             G+L A  P S  GD+ GKEGLRQKGWTI +  D+ ++   H +  ++IGGGDNQVL +T
Sbjct: 697  RGRLTAVSPYSRIGDESGKEGLRQKGWTITTVCDIVSLAFVHGVAIELIGGGDNQVLTVT 756

Query: 1119 MPKGPNGLAGTHN--------RMERFLSDLDEKMKKRGLPLKIGETWVSSSLFAYNKYMI 964
            +      L+ T++        RMERF + L +KM KRGLPLK+ ETW+S  L  YNK M 
Sbjct: 757  IKSSKKNLSLTYSQQRRLIRGRMERFRNALAKKMDKRGLPLKLEETWISHRLLMYNKIMY 816

Query: 963  FKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVSYQSIISKDHSCLVGWIFSR---- 796
              GV L S LK+ SR F  SN  +  + ++  TL   YQS+ +KD+  ++ W+ SR    
Sbjct: 817  HDGVPLTSRLKVISRLFSNSNEGIACLGSVCSTLGTGYQSLSTKDYDPVLAWVVSRVFTL 876

Query: 795  LNAAYYL------------KALWEHHPFLGQSIPEI---LTNQVQLSGMSHKTTFKNQLT 661
            LN A Y             K +     ++ + +        N    S    + +F    T
Sbjct: 877  LNVAQYHLACPVSGLTRLDKTILSSQTYMREGLSPFGASRRNPTPHSSKRDEVSFTGDKT 936

Query: 660  L--YRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRK---HSPGDVKY 496
            L    LY + L + +V GG G  +  SY+ +GFPD LSE L + Y++ +   +     + 
Sbjct: 937  LDVVDLYLICLYYHKVFGGPGVGSPLSYIMKGFPDPLSEALCFNYMVIRGGSYMSPVTRQ 996

Query: 495  VIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKGFKEF 316
             IE + R  K  +  +  LLEDP S++ D+   G  ALR  A   L ++  I+N+ FKE 
Sbjct: 997  KIENMTRVEKAKVKHWEHLLEDPVSVNHDAPSHGIAALREQASEVLKKA-TIKNRQFKEL 1055

Query: 315  LQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLGSGIN 136
            + L  K+ + ++++ LCS   + PR LHDI+GSTI GY+N+I++K+D+S+T++KL +   
Sbjct: 1056 ITLGDKNYLRELSENLCSPPVLEPRLLHDIVGSTIPGYVNTILSKVDQSSTLSKLSTTGG 1115

Query: 135  VIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            VI  I  +E  +  Y   ++ +  G     CPTR A   RN +W
Sbjct: 1116 VISNIYESEIKYYLYLTNKIKIGKGHTLSTCPTRDATTLRNTTW 1159


>gb|AGN91973.1| polymerase [Citrus leprosis virus nuclear type]
          Length = 1877

 Score =  546 bits (1406), Expect = e-166
 Identities = 315/886 (35%), Positives = 489/886 (55%), Gaps = 15/886 (1%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXX 2440
            L+N  DK+ ER NI     + +K     IYP+   T +II  GD++I             
Sbjct: 219  LINTLDKLTERVNIMTYLTLCNKTGLSSIYPSVDITLRIIQLGDQLILNEGNNAFRGLAS 278

Query: 2439 LESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQL 2263
             E+I +  II   D   +D GRF N ++Q++   G  +  +  ++L ++Q      ++ L
Sbjct: 279  YEAICVGEIINRGDSSVWDVGRFLNTMLQEVGALGENYKTWSSDVLVILQGLRIQQVSCL 338

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            HG+YR+WGHP VD   G+ K+  +   +K +  +   + +  F+E+FF  Y+++H FYPP
Sbjct: 339  HGMYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPP 398

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
            ++    +            YI   L   +E+DI +  Y+   W +I   K F +P   ++
Sbjct: 399  HTWTGPEGSN---------YIKQVLSLEKELDIHNIRYHLEDWENIRCEKTFEIPATYSL 449

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            AS +KDRA+SP R++L+ M++  G V     RRGVL WL +  I +   L  INE  +GL
Sbjct: 450  ASCIKDRAISPKRSELVSMIIRGGSVMSQSSRRGVLKWLDSTMIPVREFLDGINE--SGL 507

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
              D+  IGLYPKERELK++AR FALMS++MR+YF  TE M + ++L YFP + M+D+ L+
Sbjct: 508  SKDNSIIGLYPKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLE 567

Query: 1542 IQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRT 1363
            + +K  +L+       +  V Y+VNIDF+KWNQQMR ++TV +F D  R+FG + L  RT
Sbjct: 568  LNKKLDTLSRKQITKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRT 627

Query: 1362 YDIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNI 1186
            ++IFK+SY+YL +G Y+P+V + G+L  + P SW  D  GKEGLRQK WTI++A DL  +
Sbjct: 628  HEIFKSSYIYLSSGEYVPQVSLRGRLVHEEPYSWTNDPSGKEGLRQKYWTIMTACDLMYV 687

Query: 1185 CKEHSLTFKIIGGGDNQVLII---TMPKGPNGLAGTHNRME------RFLSDLDEKMKKR 1033
             ++H L   ++GGGDNQVLI+   T   G  G   T  + E       F+S L   M+K+
Sbjct: 688  ARQHGLKIDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKYKMGTFMSHLSNYMEKK 747

Query: 1032 GLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVS 853
            GLPLK  ETW+S +L  + K M +    L S LK ASR F LSN  +MTI NM  T++  
Sbjct: 748  GLPLKTEETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSG 807

Query: 852  YQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQVQL--SGMSHKTT 679
               + SKD        F RL  A     + + HP       E+ ++ + +   G   K  
Sbjct: 808  VTVLSSKDMQIGPAAAFGRLICADLASLVTKDHPLSDGG--EMWSDSINICRGGSRRKVN 865

Query: 678  FKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKHSPGDV 502
             +  L T  R++  + L  +V+GG   ++    + RGFPD L E L+++ +++   P   
Sbjct: 866  VRPDLKTPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWISMIKTKFPQAT 925

Query: 501  KYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKGFK 322
             +    I      +   ++ LLEDP S++ D+   G   LR  AE+ LA++   +N+ F 
Sbjct: 926  NFACMSI-----NTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFM 980

Query: 321  EFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLGSG 142
            +  +  +K  +E +A+ LCS   +  R LHD+MG+++ GY NSI +K++K+ T+ ++   
Sbjct: 981  DLARCCNKSQMEGLAEALCSGKNVDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKS 1040

Query: 141  INVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
             +VI  I   E++ ++Y     +V   +  L CPT TA  +R  SW
Sbjct: 1041 SSVIATIAGQERHCMSYFAASSSVPHDLTPLKCPTATARRYRRLSW 1086


>gb|ARJ35822.1| RNA-dependent RNA polymerase [Citrus leprosis virus N]
          Length = 1879

 Score =  545 bits (1405), Expect = e-165
 Identities = 330/953 (34%), Positives = 516/953 (54%), Gaps = 20/953 (2%)
 Frame = -1

Query: 2802 RLGDEDMKLSYIRNITSGRGHIN---SDNTVVIYSYDDDRWVMYITRELIGWKHDGLLRI 2632
            RLG   + ++  R I +    I+   SDNT   Y    D +V+           DG   I
Sbjct: 156  RLGLTHLVINKNRGIKATEDPISVRVSDNTFSYYF--GDSFVITCNPAWAIVSLDGSEHI 213

Query: 2631 TTPAILLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXXXXXXXX 2455
                 ++N+ DK+ ER+N+ +   + S  S   +YP       +I+ GD ++        
Sbjct: 214  LNMQHVINVLDKITERYNMVVYNRLSSSTSLKSLYPEEDSLIDVISMGDDLVMSEGNEAY 273

Query: 2454 XXXXXLESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHY 2278
                  E+I +  II   D   +D  RF   +I ++   G  ++ ++++LL +++N++  
Sbjct: 274  RGLSAFEAICVGEIISRGDSSVWDVSRFLRTMIDEVSSLGKNYEIWVEKLLDVLRNQNIQ 333

Query: 2277 HIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKH 2098
             ++ LHG+YR+WGHP VD   G++K+  +    K +  +   + +  F+E FF NYY+KH
Sbjct: 334  QLSCLHGIYRIWGHPVVDLEKGLEKLRSVALMDKQISPEFSRNTSNMFKETFFCNYYKKH 393

Query: 2097 GFYPPYSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLP 1918
             FYPPY+              A  YI   L   +EID  +  Y+   WSH+   K F +P
Sbjct: 394  KFYPPYTWIG---------SPATNYIRQNLVLDKEIDRHNIRYHLEDWSHVQCEKTFEIP 444

Query: 1917 TGLNIASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINE 1738
               ++AS +KDRA+SP R++LI M+   G + D   RRGVL WL +  + +   L+ I++
Sbjct: 445  ATYSLASCIKDRAISPKRSELIQMIRERGTIMDQTSRRGVLKWLNSSMVPVREFLEGIDK 504

Query: 1737 RATGLPDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMN 1558
              +GL  DDC IGLYPKERELK +AR F+LMS+ MR+YF  TE + + H+L YFP + M+
Sbjct: 505  --SGLQTDDCIIGLYPKERELKNEARYFSLMSFTMRLYFTITEHLANDHLLEYFPMVTMS 562

Query: 1557 DNFLQIQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSE 1378
            D+ L++Q+K   L+   +   +  + Y+VNIDF+KWNQQMR ++T  +F D  R+FG + 
Sbjct: 563  DSMLELQKKLDMLSRKQSTTREGTLYYVVNIDFRKWNQQMREEMTTDLFYDTDRLFGFTN 622

Query: 1377 LYNRTYDIFKNSYVYLCNGTYLPRVVN-GKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAM 1201
            L  RT++IFK SY+YL +G Y+PR+ + G L  + P SW  D  GKEGLRQK WTI++A 
Sbjct: 623  LVGRTHEIFKKSYIYLSSGEYVPRLSHRGNLTYEKPYSWTNDPSGKEGLRQKYWTIMTAC 682

Query: 1200 DLYNICKEHSLTFKIIGGGDNQVLII------TMPKGPNGLAGTHN---RMERFLSDLDE 1048
            DL  + ++H++   ++GGGDNQVLI+      T P G     G ++   +M  F+  L  
Sbjct: 683  DLMFVARKHNMKVDLVGGGDNQVLIVEVNTDLTNPDGTMSEEGKNDCKQKMASFMRSLSA 742

Query: 1047 KMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFG 868
             M+++GLPLK+ ETW+S  L  + K M F  V L S LK ASR F LSN  +MT+ NM  
Sbjct: 743  YMEEKGLPLKVEETWISPDLLMFFKMMYFNNVTLISPLKQASRVFPLSNDQVMTVGNMAS 802

Query: 867  TLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPF-LGQS-IPEILTNQVQL--S 700
            T++ +   + SKD       +  R         +  +HP   GQ  +  + +  + +   
Sbjct: 803  TVSSAVTVLSSKDMQLGPAIMLGRFVVNDLSCMVVNNHPLSKGQERVRSMWSTHISVCHG 862

Query: 699  GMSHKTTFKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMR 523
            G   +   +  + T+  ++  + L  +V+GG+  ++    + RGFPD L E L+++    
Sbjct: 863  GSRRRVAVRTGVKTVKNIFLSLTLHHKVMGGSAIISPLGMMMRGFPDPLCEHLTWI---S 919

Query: 522  KHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDK 343
            K S  D KY +   +    ++   +S LLEDP S++ D+   G   LR  AER LA +  
Sbjct: 920  KISNEDHKYTVYGSMSINNKT--PWSHLLEDPVSVNHDAPMHGLAVLRREAERALATATN 977

Query: 342  IENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTT 163
             +N  F +     +K+ +E +AD+LCS  TI  R LHDIMG+ + GY NSI +K++K++T
Sbjct: 978  YKNTDFLDLAHSCNKEMMEGLADSLCSGDTIDIRILHDIMGANLGGYFNSIASKVNKTST 1037

Query: 162  INKLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            + ++     V+E I   E   ++Y     T    +    CPT TA  +R+ SW
Sbjct: 1038 VMRMNRTSEVVEIIAGQEAVCMSYLASFPTRDHDLHLTGCPTETARRYRHVSW 1090


>gb|AQN78378.1| RNA-dependent RNA polymerase [Citrus leprosis virus N]
          Length = 1879

 Score =  545 bits (1404), Expect = e-165
 Identities = 315/899 (35%), Positives = 495/899 (55%), Gaps = 17/899 (1%)
 Frame = -1

Query: 2649 DGLLRITTPAILLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXX 2473
            DG   I     ++N+ DK+ ER+N+ +   + S  S   +YP       +I+ GD ++  
Sbjct: 208  DGSEHILNMQHVINVLDKITERYNMVVYNRLSSSTSLQSLYPEEDSLIDVISMGDDLVMS 267

Query: 2472 XXXXXXXXXXXLESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLI 2296
                        E+I +  II   D   +D  RF   +I ++   G  ++ ++++LL ++
Sbjct: 268  EGNEAYRGLSAFEAICVGEIISRGDSSVWDVSRFLRTMIDEVSSLGKNYEIWVEKLLDVL 327

Query: 2295 QNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFV 2116
            +N++   ++ LHG+YR+WGHP VD   G++K+  +    K +  +   + +  F+E FF 
Sbjct: 328  RNQNIQQLSCLHGIYRIWGHPVVDLEKGLEKLRSVALMDKQISPEFSRNTSNMFKETFFC 387

Query: 2115 NYYQKHGFYPPYSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITIN 1936
            NYY+KH FYPPY+              A  YI   L   +EID  +  Y+   WSH+   
Sbjct: 388  NYYKKHKFYPPYTWIG---------SPATNYIRQNLVLDKEIDRHNIRYHLEDWSHVQCE 438

Query: 1935 KCFPLPTGLNIASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGL 1756
            K F +P   ++AS +KDRA+SP R++LI M+   G + D   RRGVL WL +  + +   
Sbjct: 439  KTFEIPATYSLASCIKDRAISPKRSELIQMIRERGTIMDQTSRRGVLKWLNSSMVPVREF 498

Query: 1755 LKDINERATGLPDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYF 1576
            L+ I++  +GL  DDC IGLYPKERELK +AR F+LMS+ MR+YF  TE + + H+L YF
Sbjct: 499  LEGIDK--SGLQTDDCIIGLYPKERELKNEARYFSLMSFTMRLYFTITEHLANDHLLEYF 556

Query: 1575 PQIAMNDNFLQIQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGR 1396
            P + M+D+ L++Q+K   L+   +   +  + Y+VNIDF+KWNQQMR ++T  +F D  R
Sbjct: 557  PMVTMSDSMLELQKKLDMLSRKQSTTREGTLYYVVNIDFRKWNQQMREEMTTDLFYDTDR 616

Query: 1395 MFGLSELYNRTYDIFKNSYVYLCNGTYLPRVVN-GKLKAQYPLSWEGDQGGKEGLRQKGW 1219
            +FG + L  RT++IFK SY+YL +G Y+PR+ + G L  + P SW  D  GKEGLRQK W
Sbjct: 617  LFGFTNLVGRTHEIFKKSYIYLSSGEYVPRLSHRGNLTYEKPYSWTNDPSGKEGLRQKYW 676

Query: 1218 TIVSAMDLYNICKEHSLTFKIIGGGDNQVLII------TMPKGPNGLAGTHN---RMERF 1066
            TI++A DL  + ++H++   ++GGGDNQVLI+      T P G     G ++   +M  F
Sbjct: 677  TIMTACDLMFVARKHNMKVDLVGGGDNQVLIVEVNTDLTNPDGTMSEEGKNDCKQKMASF 736

Query: 1065 LSDLDEKMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMT 886
            +  L   M+++GLPLK+ ETW+S  L  + K M F  V L S LK ASR F LSN  +MT
Sbjct: 737  MRSLSAYMEEKGLPLKVEETWISPDLLMFFKMMYFNNVTLISPLKQASRVFPLSNDQVMT 796

Query: 885  IENMFGTLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFL--GQSIPEILTNQ 712
            + NM  T++ +   + SKD       +  R         +  +HP     + +  + +  
Sbjct: 797  VGNMASTVSSAVTVLSSKDMQLGPAIMLGRFVVTDLSCMVVNNHPLSKGKERVRSMWSTH 856

Query: 711  VQL--SGMSHKTTFKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLS 541
            + +   G   +   +  + T+  ++  + L  +V+GG+  ++    + RGFPD L E L+
Sbjct: 857  ISVCHGGSRRRVAVRTGVKTVKNIFLSLTLHHKVMGGSAIISPLGMMMRGFPDPLCEHLT 916

Query: 540  YLYLMRKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERY 361
            ++    K S  D KY +   +    ++   +S LLEDP S++ D+   G   LR  AER 
Sbjct: 917  WI---SKISNEDHKYTVYGSMSINNKT--PWSHLLEDPVSVNHDAPMHGLAVLRREAERA 971

Query: 360  LAESDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAK 181
            LA +   +N  F +     +K+ +E +AD+LCS  TI  R LHDIMG+ + GY NSI +K
Sbjct: 972  LATATNYKNTDFLDLAHSCNKEMMEGLADSLCSGDTIDIRILHDIMGANLGGYFNSIASK 1031

Query: 180  IDKSTTINKLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            ++K++T+ ++     V+E I   E   ++Y     T    +    CPT TA  +R+ SW
Sbjct: 1032 VNKTSTVMRMNRTSEVVEIIAGQEAVCMSYLASFPTRDHDLHLTGCPTETARRYRHVSW 1090


>gb|AQN78377.1| RNA-dependent RNA polymerase [Citrus leprosis virus N]
          Length = 1879

 Score =  544 bits (1402), Expect = e-165
 Identities = 316/899 (35%), Positives = 494/899 (54%), Gaps = 17/899 (1%)
 Frame = -1

Query: 2649 DGLLRITTPAILLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXX 2473
            DG   I     ++N+ DKV ER+N+ +   + S  S   +YP       +I+ GD ++  
Sbjct: 208  DGSEHILNMQHVINVLDKVTERYNMIVYNRLSSSTSLKSLYPEEDSLIDVISMGDDLVMS 267

Query: 2472 XXXXXXXXXXXLESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLI 2296
                        E+I +  II   D   +D  RF   +I ++   G  +  ++++LL ++
Sbjct: 268  EGNEAYRGLSAFEAICVGEIISRGDSSVWDVSRFLRTMIDEVSSLGKNYGAWVEKLLDVL 327

Query: 2295 QNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFV 2116
            +N++   ++ LHG+YR+WGHP VD   G++K+  +    K +  +   + +  F+E FF 
Sbjct: 328  RNQNIQQLSCLHGIYRIWGHPVVDLEKGLEKLRSVALMDKQISPEFSRNTSNMFKETFFC 387

Query: 2115 NYYQKHGFYPPYSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITIN 1936
            NYY+KH FYPPY+              A  YI   L   +EID  +  Y+   WSH+   
Sbjct: 388  NYYKKHKFYPPYTWIG---------SPATNYIRQNLMLDKEIDRHNIRYHLEDWSHVQCE 438

Query: 1935 KCFPLPTGLNIASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGL 1756
            K F +P   ++AS +KDRA+SP R++LI M+   G + D   RRGVL WL +  + +   
Sbjct: 439  KTFEIPATYSLASCIKDRAISPKRSELIQMIRERGTIMDQTSRRGVLKWLNSSMVPVREF 498

Query: 1755 LKDINERATGLPDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYF 1576
            L+ I++  +GL  DDC IGLYPKERELK +AR F+LMS+ MR+YF  TE + + H+L YF
Sbjct: 499  LEGIDK--SGLQTDDCIIGLYPKERELKNEARYFSLMSFTMRLYFTITEHLANDHLLEYF 556

Query: 1575 PQIAMNDNFLQIQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGR 1396
            P + M+D+ L++Q+K   L+   +   +  + Y+VNIDF+KWNQQMR ++T  +F D  R
Sbjct: 557  PMVTMSDSMLELQKKLDMLSRKQSTTREGTLYYVVNIDFRKWNQQMREEMTTDLFYDTDR 616

Query: 1395 MFGLSELYNRTYDIFKNSYVYLCNGTYLPRVVN-GKLKAQYPLSWEGDQGGKEGLRQKGW 1219
            +FG + L  RT++IFK SY+YL +G Y+PR+ + G L  + P SW  D  GKEGLRQK W
Sbjct: 617  LFGFTNLVGRTHEIFKKSYIYLSSGEYVPRLSHRGNLTYEKPYSWTNDPSGKEGLRQKYW 676

Query: 1218 TIVSAMDLYNICKEHSLTFKIIGGGDNQVLII------TMPKGPNGLAGTHN---RMERF 1066
            TI++A DL  + ++H++   ++GGGDNQVLI+      T P G     G ++   +M  F
Sbjct: 677  TIMTACDLMFVARKHNMKVDLVGGGDNQVLIVEVNTDLTNPDGTMSEEGKNDCKQKMASF 736

Query: 1065 LSDLDEKMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMT 886
            +  L   M+++GLPLK+ ETW+S  L  + K M F  V L S LK ASR F LSN  +MT
Sbjct: 737  MRSLSAYMEEKGLPLKVEETWISPDLLMFFKMMYFNNVTLISPLKQASRVFPLSNDQVMT 796

Query: 885  IENMFGTLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFL--GQSIPEILTNQ 712
            + NM  T++ +   + SKD       +  R         +  +HP     + +  + +  
Sbjct: 797  VGNMASTVSSAVTVLSSKDMQLGPAIMLGRFVVNDLSCMVVNNHPLSKGKERVRSMWSTH 856

Query: 711  VQL--SGMSHKTTFKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLS 541
            + +   G   +   +  + T+  ++  + L  +V+GG+  ++    + RGFPD L E L+
Sbjct: 857  ISVCHGGSRRRVAVRTGVKTVKNIFLSLTLHHKVMGGSAIISPLGMMMRGFPDPLCEHLT 916

Query: 540  YLYLMRKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERY 361
            ++    K S  D KY +   +    ++   +S LLEDP S++ D+   G   LR  AER 
Sbjct: 917  WI---SKISKEDHKYTVYGSMSINNKT--PWSHLLEDPVSVNHDAPMHGLAVLRREAERA 971

Query: 360  LAESDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAK 181
            LA +   +N  F +     +K+ +E +AD+LCS  TI  R LHDIMG+ + GY NSI +K
Sbjct: 972  LATATNYKNTDFLDLAHSCNKEMMEGLADSLCSGDTIDIRILHDIMGANLGGYFNSIASK 1031

Query: 180  IDKSTTINKLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            ++K++T+ ++     V+E I   E   ++Y     T    +    CPT TA  +R+ SW
Sbjct: 1032 VNKTSTVMRMNRTSEVVEIIAGQEAVCMSYLASFPTRDHDLHLTGCPTETARRYRHVSW 1090


>gb|AQN78376.1| RNA-dependent RNA polymerase [Citrus leprosis virus N]
          Length = 1879

 Score =  544 bits (1402), Expect = e-165
 Identities = 315/899 (35%), Positives = 495/899 (55%), Gaps = 17/899 (1%)
 Frame = -1

Query: 2649 DGLLRITTPAILLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXX 2473
            DG   I     ++N+ DK+ ER+N+ +   + S  S   +YP       +I+ GD ++  
Sbjct: 208  DGSEHILNMQHVINVLDKITERYNMIVYNRLSSSTSLKSLYPEEDSLIDVISMGDDLVMS 267

Query: 2472 XXXXXXXXXXXLESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLI 2296
                        E+I +  II   D   +D  RF   +I ++   G  ++ ++++LL ++
Sbjct: 268  EGNEAYRGLSAFEAICVGEIISRGDSSVWDVSRFLRTMIDEVSSLGKNYEIWVEKLLDVL 327

Query: 2295 QNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFV 2116
            +N++   ++ LHG+YR+WGHP VD   G++K+  +    K +  +   + +  F+E FF 
Sbjct: 328  RNQNIQQLSCLHGIYRIWGHPVVDLEKGLEKLRSVALMDKQISPEFSRNTSNMFKETFFC 387

Query: 2115 NYYQKHGFYPPYSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITIN 1936
            NYY+KH FYPPY+              A  YI   L   +EID  +  Y+   WSH+   
Sbjct: 388  NYYKKHKFYPPYTWIG---------SPATNYIRQNLMLDKEIDRHNIRYHLEDWSHVQCE 438

Query: 1935 KCFPLPTGLNIASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGL 1756
            K F +P   ++AS +KDRA+SP R++LI M+   G + D   RRGVL WL +  + +   
Sbjct: 439  KTFEIPATYSLASCIKDRAISPKRSELIQMIRERGTIMDQTSRRGVLKWLNSSMVPVREF 498

Query: 1755 LKDINERATGLPDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYF 1576
            L+ I++  +GL  DDC IGLYPKERELK +AR F+LMS+ MR+YF  TE + + H+L YF
Sbjct: 499  LEGIDK--SGLQTDDCIIGLYPKERELKNEARYFSLMSFTMRLYFTITEHLANDHLLEYF 556

Query: 1575 PQIAMNDNFLQIQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGR 1396
            P + M+D+ L++Q+K   L+   +   +  + Y+VNIDF+KWNQQMR ++T  +F D  R
Sbjct: 557  PMVTMSDSMLELQKKLDMLSRKQSTTREGTLYYVVNIDFRKWNQQMREEMTTDLFYDTDR 616

Query: 1395 MFGLSELYNRTYDIFKNSYVYLCNGTYLPRVVN-GKLKAQYPLSWEGDQGGKEGLRQKGW 1219
            +FG + L  RT++IFK SY+YL +G Y+PR+ + G L  + P SW  D  GKEGLRQK W
Sbjct: 617  LFGFTNLVGRTHEIFKKSYIYLSSGEYVPRLSHRGNLTYEKPYSWTNDPSGKEGLRQKYW 676

Query: 1218 TIVSAMDLYNICKEHSLTFKIIGGGDNQVLII------TMPKGPNGLAGTHN---RMERF 1066
            TI++A DL  + ++H++   ++GGGDNQVLI+      T P G     G ++   +M  F
Sbjct: 677  TIMTACDLMFVARKHNMKVDLVGGGDNQVLIVEVNTDLTNPDGTMSEEGKNDCKQKMASF 736

Query: 1065 LSDLDEKMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMT 886
            +  L   M+++GLPLK+ ETW+S  L  + K M F  V L S LK ASR F LSN  +MT
Sbjct: 737  MRSLSAYMEEKGLPLKVEETWISPDLLMFFKMMYFNNVTLISPLKQASRVFPLSNDQVMT 796

Query: 885  IENMFGTLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFL--GQSIPEILTNQ 712
            + NM  T++ +   + SKD       +  R         +  +HP     + +  + +  
Sbjct: 797  VGNMASTVSSAVTVLSSKDMQLGPAIMLGRFVVNDLSCMVVNNHPLSKGKERVRSMWSTH 856

Query: 711  VQL--SGMSHKTTFKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLS 541
            + +   G   +   +  + T+  ++  + L  +V+GG+  ++    + RGFPD L E L+
Sbjct: 857  ISVCHGGSRRRVAVRTGVKTVKNIFLSLTLHHKVMGGSAIISPLGMMMRGFPDPLCEHLT 916

Query: 540  YLYLMRKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERY 361
            ++    K S  D KY +   +    ++   +S LLEDP S++ D+   G   LR  AER 
Sbjct: 917  WI---SKISKEDHKYTVYGSMSINNKT--PWSHLLEDPVSVNHDAPMHGLAVLRREAERA 971

Query: 360  LAESDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAK 181
            LA +   +N  F +     +K+ +E +AD+LCS  TI  R LHDIMG+ + GY NSI +K
Sbjct: 972  LATATNYKNTDFLDLAHSCNKEMMEGLADSLCSGDTIDIRILHDIMGANLGGYFNSIASK 1031

Query: 180  IDKSTTINKLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            ++K++T+ ++     V+E I   E   ++Y     T    +    CPT TA  +R+ SW
Sbjct: 1032 VNKTSTVMRMNRTSEVVEIIAGQEAVCMSYLASFPTRDHDLHLTGCPTETARRYRHVSW 1090


>ref|YP_001294929.1| polymerase [Orchid fleck dichorhavirus]
 dbj|BAE93584.1| polymerase [Orchid fleck dichorhavirus]
          Length = 1877

 Score =  543 bits (1399), Expect = e-165
 Identities = 314/886 (35%), Positives = 487/886 (54%), Gaps = 15/886 (1%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXX 2440
            L+N  DK+ ER NI     + +K     IYP+   T KII  GD +I             
Sbjct: 219  LINTLDKLTERVNIMTYLTLCNKTGLSSIYPSVDITLKIIQLGDNLILNEGNDAFRGLAS 278

Query: 2439 LESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQL 2263
             E+I +  II   D   +D GRF N ++Q++   G  +  +  ++L ++Q      ++ L
Sbjct: 279  YEAICVGAIINRGDSSVWDVGRFLNTMVQEVGSLGENYKTWSSDVLVILQGLKIQQVSCL 338

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            HG+YR+WGHP VD   G+ K+  +   +K +  +   + +  F+E+FF  Y+++H FYPP
Sbjct: 339  HGMYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPP 398

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
            ++    +            YI   L   +E+DI +  Y+   W +I   K F +P   ++
Sbjct: 399  HTWTGPEGSN---------YIKQVLSLEKELDIHNIRYHLEDWENIRCEKTFEIPATYSL 449

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            AS +KDRA+SP R++L+ M++  G V     RRGVL WL +  I +   L  I++  +GL
Sbjct: 450  ASCIKDRAISPKRSELVSMIIRGGSVMSQSSRRGVLKWLDSTMIPVREFLDGIDK--SGL 507

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
              D+  IGLYPKERELK++AR FALMS++MR+YF  TE M + ++L YFP + M+D+ L+
Sbjct: 508  SKDNSIIGLYPKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLE 567

Query: 1542 IQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRT 1363
            + +K  +L+       +  V Y+VNIDF+KWNQQMR ++TV +F D  R+FG + L  RT
Sbjct: 568  LNKKLDTLSRKQVTKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRT 627

Query: 1362 YDIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNI 1186
            ++IFK+SY+YL +G Y+P+V + G+L  + P SW  D  GKEGLRQK WTI++A DL  +
Sbjct: 628  HEIFKSSYIYLSSGEYVPQVSLRGRLVQEEPYSWTNDPSGKEGLRQKYWTIMTACDLMYV 687

Query: 1185 CKEHSLTFKIIGGGDNQVLII---TMPKGPNGLAGTHN------RMERFLSDLDEKMKKR 1033
             ++H L   ++GGGDNQVLI+   T   G  G   T        +ME F+  L   M+K+
Sbjct: 688  ARQHGLKIDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKFKMETFMRHLSNYMEKK 747

Query: 1032 GLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVS 853
            GLPLK  ETW+S +L  + K M +    L S LK ASR F LSN  +MTI NM  T++  
Sbjct: 748  GLPLKTEETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSG 807

Query: 852  YQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQVQL--SGMSHKTT 679
               + SKD        F RL  A     + + HP       E+ ++ + +   G   K  
Sbjct: 808  VTVLSSKDMQIGPAAAFGRLICADLASLVTKDHPLSDGG--EMWSDSISICRGGSRRKVN 865

Query: 678  FK-NQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKHSPGDV 502
             K N  T  R++  + L  +V+GG   ++    + RGFPD L E L+++ +++       
Sbjct: 866  VKPNLKTPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWVSMIKSKFSQAA 925

Query: 501  KYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKGFK 322
             +    I      +   ++ LLEDP S++ D+   G   LR  AE+ LA++   +N+ F 
Sbjct: 926  NFACMSI-----NTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFM 980

Query: 321  EFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLGSG 142
            +  +  +K  +E +A+ LCS   +  R LHD+MG+++ GY NSI +K++K+ T+ ++   
Sbjct: 981  DLARCCNKSQMEGLAEALCSGKNVDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKS 1040

Query: 141  INVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
             +VI  I   E++ ++Y     +V   +  L CPT TA  +R  SW
Sbjct: 1041 SSVIATIAGQERHCMSYFAASSSVPHDLTPLRCPTATARRYRRLSW 1086


>dbj|BAX37191.1| polymerase [Orchid fleck dichorhavirus]
          Length = 1877

 Score =  543 bits (1398), Expect = e-164
 Identities = 316/886 (35%), Positives = 485/886 (54%), Gaps = 15/886 (1%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXX 2440
            L+N  DK+ ER NI     +  K     IYP+   T KII  GD +I             
Sbjct: 219  LINTLDKLTERVNIMTYLTLCDKTGLSSIYPSVDITLKIIQLGDNLILNEGNDAFRGLAS 278

Query: 2439 LESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQL 2263
             E+I +  II   D   +D GRF N ++Q++   G  +  +  ++L ++Q      ++ L
Sbjct: 279  YEAICVGEIINRGDSSVWDVGRFLNTMLQEVGSLGENYKTWSSDVLVILQGLKIQQVSCL 338

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            HG+YR+WGHP VD   G+ K+  +   +K +  +   + +  F+E+FF  Y+++H FYPP
Sbjct: 339  HGMYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPP 398

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
            Y+    +            YI   L   +E+DI +  Y+   W +I   K F +P   ++
Sbjct: 399  YTWIGPEGSN---------YIKQVLSLEKELDIHNIRYHLEDWENIRCEKTFEIPATYSL 449

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            AS +KDRA+SP R++L+ M++  G V     RRGVL WL +  I +   L  I+E  +GL
Sbjct: 450  ASCIKDRAISPKRSELVSMIIKGGSVMSQSSRRGVLKWLDSTMIPVREFLDGIDE--SGL 507

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
              D+  IGLYPKERELK++AR FALMS++MR+YF  TE M + ++L YFP + M+D+ L+
Sbjct: 508  SKDNSIIGLYPKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLE 567

Query: 1542 IQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRT 1363
            + +K  +L+       +  V Y+VNIDF+KWNQQMR ++TV +F D  R+FG + L  RT
Sbjct: 568  LNKKLDTLSRKQVTKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRT 627

Query: 1362 YDIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNI 1186
            ++IFK+SY+YL +G Y+P+V + G+L  + P SW  D  GKEGLRQK WTI++A DL  +
Sbjct: 628  HEIFKSSYIYLSSGEYVPQVSLRGRLVHEEPYSWTKDPSGKEGLRQKYWTIMTACDLMYV 687

Query: 1185 CKEHSLTFKIIGGGDNQVLII---TMPKGPNGLAGTHNRME------RFLSDLDEKMKKR 1033
             ++H L   ++GGGDNQVLI+   T   G  G   T  + E       F+  L   M+K+
Sbjct: 688  ARQHGLKIDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKFKMGTFMRHLSNYMEKK 747

Query: 1032 GLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVS 853
            GLPLK  ETW+S +L  + K M +    L S LK ASR F LSN  +MTI NM  T++  
Sbjct: 748  GLPLKTEETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSG 807

Query: 852  YQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQVQL--SGMSHKTT 679
               + SKD        F RL  A     + + HP       E+ ++ + +   G   K  
Sbjct: 808  VTVLSSKDMQIGPAAAFGRLICADLASLVTKDHPLSDGG--EMWSDSISICRGGSRRKVN 865

Query: 678  FKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKHSPGDV 502
             K  L T  R++  + L  +V+GG   ++    + RGFPD L E L+++ +++       
Sbjct: 866  VKPDLKTPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWISMIKSKFSQAA 925

Query: 501  KYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKGFK 322
             +    I      +   ++ LLEDP S++ D+   G   LR  AE+ LA++   +N+ F 
Sbjct: 926  NFACMSI-----NTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFM 980

Query: 321  EFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLGSG 142
            +  +  +K  +E +A+ LCS   I  R LHD+MG+++ GY NSI +K++K+ T+ ++   
Sbjct: 981  DLARCCNKSQMEGLAEALCSGKNIDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKS 1040

Query: 141  INVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
             +VI  I   E++ ++Y     +V   +  L CPT TA  +R  SW
Sbjct: 1041 SSVIATIAGQERHCMSYFAASSSVPHDLTPLKCPTATARRYRRLSW 1086


>gb|ARJ35804.1| RNA-dependent RNA polymerase [Citrus chlorotic spot virus]
          Length = 1874

 Score =  540 bits (1390), Expect = e-163
 Identities = 322/891 (36%), Positives = 487/891 (54%), Gaps = 20/891 (2%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXX 2440
            ++N+ DK+ ER+N  +   +    S   IYP+    + +I+ GD ++             
Sbjct: 219  IVNVLDKLTERYNSIIYNRMCRSTSMSSIYPSDSTLQSVISLGDSLLLAEGNEAYRGLAS 278

Query: 2439 LESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQL 2263
             E++ +  II   D G +D  +F   + Q++ + G  FD +   L ++++  +   I+ L
Sbjct: 279  FEALCVGEIINKGDKGVWDVNKFLRTMKQEVGQLGAQFDHWCTSLCRILEGLNVQQISCL 338

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            HGLYR+WGHP VD   G++K+  +   +K + R   I+ +  F+E FF+NYY+KH FYPP
Sbjct: 339  HGLYRIWGHPVVDLEKGLEKLRSVALVEKFIPRSFSINTSNMFKETFFMNYYKKHKFYPP 398

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
            Y+                 Y+   L   +EID  +  Y+   W  +   K F +P   ++
Sbjct: 399  YTWIG---------PPGSHYLQQNLLLEKEIDRHNIRYHIEDWQSVQCEKTFEIPATYSL 449

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            AS +KDRA+SP+R++L  MV ++  V +   RRGVL WL +  I +   L++IN+ +   
Sbjct: 450  ASCIKDRAISPTRSELERMVQSSRSVMNQDARRGVLKWLNSSMIPVRDFLQNINDNSLNF 509

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
              DDC IGLYPKERELKL+AR FALMS+KMR+YF  TE + + H+L YFP + M+D+ L+
Sbjct: 510  --DDCIIGLYPKERELKLEARYFALMSFKMRLYFTITEHLANDHLLEYFPMVTMSDSMLE 567

Query: 1542 IQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRT 1363
            +Q+K  +L+          V Y+VNIDF+KWNQQMR ++TV +F D  R+FG + L  RT
Sbjct: 568  LQKKLDALSRKQTSSKRGVVHYVVNIDFRKWNQQMREEMTVDLFHDTDRLFGFTNLVGRT 627

Query: 1362 YDIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNI 1186
            ++IFK SY+YL +G Y+P +   GKLK + P SW  D  GKEGLRQK WTI++A DL  +
Sbjct: 628  HEIFKRSYIYLSSGEYVPTLNSRGKLKTEAPYSWTNDPSGKEGLRQKYWTIMTACDLMVV 687

Query: 1185 CKEHSLTFKIIGGGDNQVLIITMPK---------GPNGLAGTHNRMERFLSDLDEKMKKR 1033
             ++ ++   ++GGGDNQVLI+ +              G A    +M  F+  L E M+ +
Sbjct: 688  ARKFNMKIDLVGGGDNQVLIVEVSSDRLDHDGTMSQEGKAECQEKMNSFMQSLSEYMEAK 747

Query: 1032 GLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVS 853
            GLPLK+ ETW+S  L  + K M F+ V L S LK ASR F LSN  +MTI NM  T++ +
Sbjct: 748  GLPLKMEETWISPDLLMFFKMMYFRHVTLISPLKQASRVFPLSNDQVMTIGNMASTISSA 807

Query: 852  YQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHP------FLGQSIPEILTNQVQ--LSG 697
               + SKD       +  RL        +  +HP         + +P I    V+  ++ 
Sbjct: 808  VTVLSSKDMQVGPAIMLGRLTVGDLSVMVCNNHPLSLDKRMWSEKVP-ICRGGVRRIINV 866

Query: 696  MSHKTTFKNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKH 517
              H+   K      +++  + L  +VLGG+  ++    L RGFPD L E L+++ ++ + 
Sbjct: 867  PPHRRVPK------KIFLSLTLHHKVLGGSAIISPLGMLMRGFPDPLCEHLTWMSMIIRS 920

Query: 516  SPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIE 337
             P   +Y I   +    +S   +S LLEDP S++ D+   G   LR  AE  LA + K  
Sbjct: 921  RP---EYRIFACMSLNNKS--PWSHLLEDPVSVNHDAPIHGLAVLRREAENALASARKYT 975

Query: 336  NKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTIN 157
            NK F E     +K  +E +AD LCS   I  R LHDIMG+ + GY NSI +K++K++T+ 
Sbjct: 976  NKDFLELAHTCNKQMMEGLADALCSGDNIDIRVLHDIMGANLGGYFNSIASKVNKASTVL 1035

Query: 156  KLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            ++     VIE I   EK  ++Y      +   +    CPT TA  +R  SW
Sbjct: 1036 RMNKTSKVIETITGQEKVCMSYYASYGMIDHDLTPSACPTVTARRYRALSW 1086


>dbj|BAH97108.1| polymerase [Orchid fleck dichorhavirus]
          Length = 1877

 Score =  539 bits (1389), Expect = e-163
 Identities = 313/886 (35%), Positives = 485/886 (54%), Gaps = 15/886 (1%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVS-PLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXX 2440
            L+N  DK+ ER NI     + +K     IYP+   T KII  GD +I             
Sbjct: 219  LINTLDKLTERVNIMTYLTLCNKTGLSSIYPSVDITLKIIKLGDNLILNEGNDAFRGLAS 278

Query: 2439 LESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQL 2263
             E+I +  II   D   +D GRF N ++Q++   G  +  +  ++L ++Q      ++ L
Sbjct: 279  YEAICVGEIINRGDSSVWDVGRFLNTMLQEVGSLGENYKTWSSDVLVILQGLKIQQVSCL 338

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            HG+YR+WGHP VD   G+ K+  +   +K +  +   + +  F+E+FF  Y+++H FYPP
Sbjct: 339  HGMYRIWGHPVVDLEKGLMKLRSVALMEKEIPPECARNTSNMFKEIFFTQYFRRHKFYPP 398

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
            ++    +            YI   L   +E+D  +  Y+   W +I   K F +P   ++
Sbjct: 399  HTWTGPEGSN---------YIKQVLSLEKELDTHNIRYHLEDWENIRCEKTFEIPATYSL 449

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            AS +KDRA+SP R++L+ M++  G V     RRGVL WL +  I +   L  I+E  +GL
Sbjct: 450  ASCIKDRAISPKRSELVSMIIRGGSVMSQSSRRGVLKWLDSTMIPVREFLDGIDE--SGL 507

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
              D+  IGLYPKERELK++AR FALMS++MR+YF  TE M + ++L YFP + M+D+ L+
Sbjct: 508  SKDNSIIGLYPKERELKMEARFFALMSFQMRLYFTITEHMANDNLLDYFPMVTMSDSMLE 567

Query: 1542 IQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRT 1363
            + +K  +L+       +  V Y+VNIDF+KWNQQMR ++TV +F D  R+FG + L  RT
Sbjct: 568  LNKKLDTLSRKQVTKKEGVVHYVVNIDFRKWNQQMREEMTVPMFLDADRLFGYTNLVGRT 627

Query: 1362 YDIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNI 1186
            ++IFK+SY+YL +G Y+P+V + G+L  + P SW  D  GKEGLRQK WTI++A DL  +
Sbjct: 628  HEIFKSSYIYLSSGEYVPQVSLRGRLVHEEPYSWTNDPSGKEGLRQKYWTIMTACDLMYV 687

Query: 1185 CKEHSLTFKIIGGGDNQVLII---TMPKGPNGLAGTHNRME------RFLSDLDEKMKKR 1033
             ++H L   ++GGGDNQVLI+   T   G  G   T  + E       F+  L   M+K+
Sbjct: 688  ARQHGLKIDLVGGGDNQVLIVEVTTDKVGDGGELTTEGKSECKFKMGTFMRHLSNYMEKK 747

Query: 1032 GLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVS 853
            GLPLK  ETW+S +L  + K M +    L S LK ASR F LSN  +MTI NM  T++  
Sbjct: 748  GLPLKTEETWISPNLLMFFKMMYYDHTTLVSPLKQASRVFPLSNDQVMTIGNMAATVSSG 807

Query: 852  YQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQVQL--SGMSHKTT 679
               + SKD        F RL  A     + + HP       E+ ++ + +   G   K  
Sbjct: 808  VTVLSSKDMQIGPAAAFGRLICADLASLVTKDHPLSDGG--EMWSDSISICRGGSRRKVN 865

Query: 678  FKNQL-TLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKHSPGDV 502
             K  L T  R++  + L  +V+GG   ++    + RGFPD L E L+++ +++       
Sbjct: 866  VKPDLKTPMRIFLSLTLLHKVMGGPAIVSPLGMMMRGFPDPLCEHLTWISMIKSKFSQAD 925

Query: 501  KYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKGFK 322
             +    I      +   ++ LLEDP S++ D+   G   LR  AE+ LA++   +N+ F 
Sbjct: 926  NFACMSI-----NTKVPWAHLLEDPVSVNHDAPMHGLAVLRREAEQALAKASGYKNRDFM 980

Query: 321  EFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLGSG 142
            +  +  +K  +E +A+ LCS   +  R LHD+MG+++ GY NSI +K++K+ T+ ++   
Sbjct: 981  DLARCCNKSQMEGLAEALCSGKNVDIRVLHDVMGASLGGYFNSIASKVNKTATVLRMNKS 1040

Query: 141  INVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
             +VI  I   E++ ++Y     +V   +  L CPT TA  +R  SW
Sbjct: 1041 SSVIATIAGQERHCMSYFAASSSVPHDLTPLKCPTATARRYRRLSW 1086


>gb|AHH44830.1| RNA-dependent RNA polymerase [Coffee ringspot dichorhavirus]
          Length = 1864

 Score =  534 bits (1375), Expect = e-161
 Identities = 312/888 (35%), Positives = 495/888 (55%), Gaps = 17/888 (1%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDI-GSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXX 2440
            ++N+ DK+ ER+N  +   +  S     IYP     + +I+ GD ++             
Sbjct: 219  IVNVLDKLTERYNSIIYNRMCRSTTMKSIYPPDNVLQNVISLGDSLVLAEGNEAYRGLAS 278

Query: 2439 LESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQL 2263
             E++ +  II   D G +D  +F   + Q++ + G  F+ +   L ++++  +   I+ L
Sbjct: 279  FEALCVGEIINKGDSGVWDVNKFLRTMRQEVGQLGAQFNHWCTSLCRILEELNVQQISCL 338

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            HG+YR+WGHP VD   G++K+  +   +K + R   ++ +  F+E FF+NYY+KH FYPP
Sbjct: 339  HGIYRIWGHPVVDLEKGLEKLRSVALVEKQIPRSFSLNTSNMFKETFFMNYYKKHKFYPP 398

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
            Y+    +         +H Y+   L   +EID  +  Y+   W ++   K F +P   ++
Sbjct: 399  YTWNGPEG--------SH-YLQQNLMLEKEIDRHNIRYHIEDWQNVQCEKTFEIPATYSL 449

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            AS +KDRA+SP+R++L  M+ ++  V +   RRGVL WL +  + +   L+DIN+  +GL
Sbjct: 450  ASCIKDRAISPTRSELARMIQSSRSVMNQEARRGVLKWLNSSMVPVRNFLRDIND--SGL 507

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
              DDC IGLYPKERELKL+AR FALMS+ MR+YF  TE + + H+L YFP + M+D+ L+
Sbjct: 508  HIDDCIIGLYPKERELKLEARYFALMSFNMRLYFTITEHLANDHLLEYFPMVTMSDSMLE 567

Query: 1542 IQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRT 1363
            +Q+K  +L+          + Y+VNIDF+KWNQQMR ++TV +F D  R+FG + L  RT
Sbjct: 568  LQKKLDALSKKQTSAKRGVIHYVVNIDFRKWNQQMREEMTVDLFHDTDRLFGFTNLVGRT 627

Query: 1362 YDIFKNSYVYLCNGTYLPRVVNGK--LKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYN 1189
            ++IF+ SY+YL +G Y+P  +NG+  LK + P SW  D  GKEGLRQK WTI++A DL  
Sbjct: 628  HEIFRKSYIYLSSGEYVP-TLNGRGGLKTETPYSWTNDPSGKEGLRQKYWTIMTACDLMV 686

Query: 1188 ICKEHSLTFKIIGGGDNQVLIITMPKGPNGLAGT---------HNRMERFLSDLDEKMKK 1036
            + ++ ++   ++GGGDNQVLI+ +        GT           +M  F++ L E M+ 
Sbjct: 687  VARKFNMKIDLVGGGDNQVLIVEVSTDRVNHDGTMSDEGKMECQEKMTSFMTSLSEYMED 746

Query: 1035 RGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAV 856
            +GLPLK+ ETW+S  L  + K M F+ V L S LK ASR F LSN  +MT+ NM  T++ 
Sbjct: 747  KGLPLKVEETWISPDLLMFFKMMYFRHVTLVSPLKQASRVFPLSNDQVMTVGNMASTISS 806

Query: 855  SYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQ---VQLSGMSHK 685
            +   + SKD       +  RL+       +  +HP    S+ + + ++   +   G+   
Sbjct: 807  AVTVLSSKDMQVGPAIMVGRLSVGDLSVMVCNNHPL---SVDKKMWSEKVPICRGGIRRM 863

Query: 684  TTF-KNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKHSPG 508
             +   ++    +++  + L  +VLGG+  ++    L RGFPD L E L++L ++ +  P 
Sbjct: 864  VSVPPHRKVPSKIFLSLTLHHKVLGGSAIISPLGMLMRGFPDPLCEHLTWLSMLVRSRP- 922

Query: 507  DVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKG 328
              +Y +   +    ++   +S LLEDP S++ D+   G   LR  AE  LA + +  NK 
Sbjct: 923  --EYKVFSCMSMNNKT--PWSHLLEDPVSVNHDAPIHGLAVLRREAENALASASRYTNKD 978

Query: 327  FKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLG 148
            F E     +K  VE +AD LCS   I  R LHDIMG+ + GY NSI +K++K++T+ ++ 
Sbjct: 979  FLELAHTCNKQMVEGLADALCSGDNIDIRILHDIMGANLGGYFNSIASKVNKASTVLRMN 1038

Query: 147  SGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
                VIE I   EK  ++Y      +   +    CPT +A  +R  SW
Sbjct: 1039 KTSKVIETITGQEKVCMSYYVSYGMIDHDLTPSDCPTVSARRYRAISW 1086


>ref|NP_042286.1| polymerase [Sonchus yellow net nucleorhabdovirus]
 sp|P31332.1|L_SYNV RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=GDP
            polyribonucleotidyltransferase; Includes: RecName:
            Full=Cap-specific mRNA
            (nucleoside-2'-O-)-methyltransferase 2
 gb|AAA47896.1| ORF [Sonchus yellow net nucleorhabdovirus]
 gb|AAA50385.1| polymerase [Sonchus yellow net nucleorhabdovirus]
          Length = 2116

 Score =  532 bits (1370), Expect = e-159
 Identities = 333/1005 (33%), Positives = 519/1005 (51%), Gaps = 57/1005 (5%)
 Frame = -1

Query: 2847 YLQKAVYVYNYLLSKRLGDEDMKLSYIRNITSGRGHINSDNTVVIYSYDDDRWVMYITRE 2668
            +L  A+ V N+  +  + D  ++L+ +            +  V++  Y++   + Y+ + 
Sbjct: 169  FLNLALIVLNHTDADSMPDRRVELNGVT--------FKLEEGVILCEYNEYLKI-YVLKG 219

Query: 2667 LIGWKHDGLLRITTPAILLNLCDKVQERFNIQMITDIGSKVSPLIYPTWQDTK------- 2509
             + W      ++    + L +CDK+ ER NI +   I   ++ L + T  D         
Sbjct: 220  AVIWDMPAYRQVLQKDLFLTICDKISERINIVIGATI---ITALSHKTNLDDPDSHLYDA 276

Query: 2508 --KIIAWGDKVIXXXXXXXXXXXXXLESIMISRIIKSEDDG-FDQGRFQNNIIQD--ILE 2344
               +I  GD ++              E+  ++ I+  +D   ++   F NN+I+D  I +
Sbjct: 277  CINMIKIGDNILVNHGNRGFDLLGKFEAYCVACILTYDDQRIWNPLEFLNNLIEDDRINQ 336

Query: 2343 DGIYFDPYIKELLQLIQNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDR 2164
              +Y D     L+  ++ +    +A+LHGL+R+WGHP +D   GMKK+     ++  V  
Sbjct: 337  PDLYNDA--NNLVAFLRKQPIVILAELHGLWRIWGHPIIDLEGGMKKMEATCTKQSPVSV 394

Query: 2163 QLEIDCNMTFREVFFVNYYQKHGFYPPYSCP----------------KYDEIKDAKIRKA 2032
            +    C  T +  FF NYY KH  YP  +                  K + + +  I   
Sbjct: 395  EETRVCERTMKLTFFTNYYDKHHHYPLSTLTHPDHFNLYSQYLSERDKIEYLANKDIAFE 454

Query: 2031 HVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNIASFLKDRAVSPSRTDLI 1852
            H YI+  +   ++I   S  YN   W  + I + F +P  +N+A+ +KD+A+S +R++LI
Sbjct: 455  HSYIMRCIRRNKKIFQRSSLYNHKDWDQVVILQSFQIPKSVNLATMIKDKAISMTRSELI 514

Query: 1851 HMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLPDDDCTIGLYPKERELK 1672
              V     V D  KRRG+L WL  Q   I   L  I+++  GL +DDC IGLYPKERE+K
Sbjct: 515  ESVNTKNSVFDSTKRRGILKWLNEQSDKIYNFLMRIDDK--GLDEDDCIIGLYPKEREMK 572

Query: 1671 LQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQIQQKFVSLTTPMAKDHD 1492
             +AR F+LMSYK+R+Y  +TEE+L  +VL YFP I M+DN L +  +   +TT +  D  
Sbjct: 573  TKARFFSLMSYKLRMYVTSTEELLGKYVLKYFPMITMSDNLLSMVIRLFDMTT-LIGDKG 631

Query: 1491 THVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRTYDIFKNSYVYLCNGTYL 1312
              VTY +NIDF KWNQ MR     G+F +L R+ G   L +RT+ IFK  Y+YLC+G Y+
Sbjct: 632  VAVTYSMNIDFSKWNQNMRERTNAGIFDNLDRILGFRSLISRTHSIFKACYLYLCSGEYV 691

Query: 1311 PRVVNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNICKEHSLTFKIIGGGDNQV 1132
            P + N +L AQ P S  GD+ GKEGLRQKGWTI +  D+ ++  +++   ++IGGGDNQV
Sbjct: 692  PVISNNQLTAQSPWSRTGDESGKEGLRQKGWTITTVCDILSLAFKYNARIQLIGGGDNQV 751

Query: 1131 LIITMPKG--------PNGLAGTHNRMERFLSDLDEKMKKRGLPLKIGETWVSSSLFAYN 976
            L +TM            + L     RM  F + L +KM KRGLPLK+ ETW+S +L  YN
Sbjct: 752  LTVTMLPSESMQSQGRDSQLLKVRERMTSFRNALAKKMVKRGLPLKLEETWISHNLLMYN 811

Query: 975  KYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVSYQSIISKDHSCLVGWIFSR 796
            K M + GV L   LK+ SR F  SN  + ++  +  TL   +QSI +KD++  + W+ SR
Sbjct: 812  KIMYYSGVPLRGRLKVISRLFSNSNVGVTSLGGITSTLGTGFQSISTKDYTPTLAWLISR 871

Query: 795  LNAAYYLKALWEHHPFLG---------QSIPEILTNQVQLSGMSHKTTFK---------- 673
            +    Y+      +P  G          S   I   + +L G +                
Sbjct: 872  VFTDIYISTYHLLNPISGTQRLDKQVLMSRGNIRQGRNELGGETSVPIINKIRNHAALAT 931

Query: 672  -NQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKHSPGD-VK 499
             + L L  L   +L + ++LGG G     +Y+ +GFPD LSE L++ YL+  +   +  K
Sbjct: 932  DHTLDLDSLLICVLYYHKILGGPGIGPPTAYVMKGFPDPLSEGLTFNYLVITNVLNERTK 991

Query: 498  YVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESDKIENKGFKE 319
              I  + +  K     +  LLEDP S++ D+   G  ALR  AE  +  S KI N GFK 
Sbjct: 992  RKIISVTKVMKNRNQHWEHLLEDPVSVNHDAPPHGIAALRAQAEAVM-RSAKITNIGFKN 1050

Query: 318  FLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKSTTINKLGSGI 139
             + +     +  +++ LCS   + PR LHDI+GSTI G++NS+++++D+STTINK+    
Sbjct: 1051 LIDIGDNQYLRDLSEKLCSPNDLEPRLLHDIVGSTIPGFVNSVLSRVDQSTTINKIAGNS 1110

Query: 138  NVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            +V+  I  +E ++  Y   ++  Q G     CPTR ++  RN +W
Sbjct: 1111 DVVTSIYLSEMSYYLYLSKKVNTQDGHAIGSCPTRDSKMLRNWTW 1155


>ref|YP_052849.1| L [Maize fine streak nucleorhabdovirus]
 gb|AAT66751.1| L [Maize fine streak nucleorhabdovirus]
          Length = 1944

 Score =  521 bits (1341), Expect = e-156
 Identities = 310/897 (34%), Positives = 469/897 (52%), Gaps = 25/897 (2%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXXL 2437
            LLN+ DK+ ER N  + + I ++V  ++  +     +++AWGD VI              
Sbjct: 207  LLNITDKLGERLNCFIFSSISNQVQDMLSVSMNCLDRVMAWGDTVIKNHGSAGFQLLSNY 266

Query: 2436 ESIMISRIIKSEDDG-FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQLH 2260
            E +++  ++   DD  +D  RF  N+I DI E+  +   Y+ ELL+L+   S   +  +H
Sbjct: 267  EPLVVGVLLSRGDDRLWDTTRFLTNVISDIKEELSWAVFYVDELLELLSGLSIDQLCDIH 326

Query: 2259 GLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPPY 2080
            GLYR+WGHPEV    G++K+  +    K +D++        F+E+FF NY + H  YP +
Sbjct: 327  GLYRIWGHPEVQLKQGLEKMFKISMADKVIDQENINISGRMFKELFFRNYKKIHKHYPNF 386

Query: 2079 SCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNIA 1900
            +    DE +  ++     Y++  L   QEI I    Y    W  ++I K F +P   N+A
Sbjct: 387  TFNVIDESELNELLLTD-YVMKCLNDNQEIRIDEARYELNSWDRVSILKNFEIPYSWNLA 445

Query: 1899 SFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLP 1720
              +KD+AVSP R +L   V           RR VL WL    + +   L +I+    G+ 
Sbjct: 446  HNIKDKAVSPDREELKTSVRRGLGAIWQDARRTVLKWLNLNILSMRDFLSNIDR--FGMD 503

Query: 1719 DDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQI 1540
                 IGLY KERELK   R F+LMS+ +R+Y V+TE+++S ++L YFPQI M  + L +
Sbjct: 504  VKHLIIGLYAKERELKYYPRFFSLMSFYLRLYVVSTEQLISDNLLQYFPQITMTSDLLSM 563

Query: 1539 QQKFVSLTTPMAKDHDT---------HVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFG 1387
             +K + L+  M +  D           V+Y +NIDFKKWNQQMR +IT  VFT +   FG
Sbjct: 564  TKKILKLSGKMKEKDDDFNTNETRKKEVSYSINIDFKKWNQQMRYEITEPVFTQIDATFG 623

Query: 1386 LSELYNRTYDIFKNSYVYLCNGTYLPRVVNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVS 1207
             + +  RT+  F+  YVYLC+G Y P +       + P SW  D  GKEGLRQKGWTI++
Sbjct: 624  FTNVIRRTHQFFQGCYVYLCSGEYTPEISGDSFILEPPWSWTNDGSGKEGLRQKGWTIMT 683

Query: 1206 AMDLYNICKEHSLTFKIIGGGDNQVLIITMPKGPNGLAGT---------HNRMERFLSDL 1054
               +  + ++H+   ++IGGGDNQVL++T+        GT           RME+ L DL
Sbjct: 684  VCMIEYVMRQHAARSQLIGGGDNQVLVVTLETESLNNDGTITNEGKRELKERMEKILKDL 743

Query: 1053 DEKMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENM 874
            D      GLPLKI ETWVSS LF YNK M ++G  L S LK ASR F  S+    T+  +
Sbjct: 744  DSFFTSVGLPLKINETWVSSELFMYNKIMCYRGRTLRSCLKTASRSFPFSDDAATTLHGI 803

Query: 873  FGTLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLG---QSIPEILTNQVQL 703
              TL  S +S+ SKD S L  ++FSR         ++  HP +     ++P I +    +
Sbjct: 804  MSTLGTSVKSLCSKDFSHLPAYVFSRWLVLIASYLVFYFHPLIPGGINNLPSIQSRYGNM 863

Query: 702  SGMSHKTTFKNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMR 523
                     ++ +T+ +L    L + R+ GG G      ++ RGFPD L+  ++++    
Sbjct: 864  GSFVKMQVQRSNMTIKKLITRCLFYFRIFGGYGIGVPSDWVMRGFPDPLTSAIAWINRCL 923

Query: 522  KHSPGDVKY---VIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAE 352
                G   Y   +   I   TK   P Y  L+ DP S++ D    G   LR  AE+ + E
Sbjct: 924  SLISGTNPYRDELTSFISMSTKPGDPSYLHLISDPVSINHDGPIHGLARLREEAEKAIVE 983

Query: 351  SDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDK 172
            S  ++N   KE  ++    + + + + +CS+  + P+ LHDI  +T+YGY NSI++++DK
Sbjct: 984  SPLVKNHNLKEIAKVCYSQNSQSLLNAMCSSNVLEPKFLHDIFSATLYGYFNSIVSRVDK 1043

Query: 171  STTINKLGSGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESWE 1
            S TI +L    NV+E +R TE  +I Y   R +  + MK   C   TAE +R+ SW+
Sbjct: 1044 SATITRLNKKANVMEALRITEIEYILYSLERSSHHYDMKPATCSRITAEIYRSTSWK 1100


>gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdovirus 1]
          Length = 2071

 Score =  492 bits (1266), Expect = e-145
 Identities = 311/899 (34%), Positives = 470/899 (52%), Gaps = 28/899 (3%)
 Frame = -1

Query: 2616 LLNLCDKVQERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXXL 2437
            L ++ D   ERF + +   +GS  +P  YPTW     ++ WGD V+              
Sbjct: 195  LRSVVDVCTERFLVCLGLTLGSSYNPDHYPTWDRLLPVLTWGDDVLKKHGNSGFKLLKAF 254

Query: 2436 ESIMISRI-IKSEDDGFDQGRFQNNIIQDILEDGIYFDPYIKELLQLI-QNKSHYHIAQL 2263
            E+I++  +  KS     D  RF NN + D++++ + F    K L+  I Q +S +H+ QL
Sbjct: 255  EAIVLGVLQTKSTGTFVDNHRFLNNTLADLIDENVDFGVRAKSLVSYISQFESPHHLTQL 314

Query: 2262 HGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPP 2083
            +GL+R+WGHP VD   GM K+  +  +       L     + F+++F  +Y  K+G YP 
Sbjct: 315  YGLHRIWGHPIVDPAKGMIKMITIGQKDIIEPGPLPEVLGVHFKKMFIKSYKDKNGVYP- 373

Query: 2082 YSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNI 1903
                        K+R     +   L   Q+  + S       WS +   K F +P   N+
Sbjct: 374  ------------KVRDQGTTLEQLLLGNQDWGLCSSLDLEGQWSTLKFEKNFEIPESFNL 421

Query: 1902 ASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGL 1723
            +  + D++VSP+  +L   V+  G V +   RRGVL W+ ++ ID    LKD  E     
Sbjct: 422  SMIVADKSVSPTLNELKANVLTRGTVMNSELRRGVLRWINSESIDPREFLKDTAEGK--F 479

Query: 1722 PDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQ 1543
            P D   IGL  KEREL    RMFALMS+ MRVY V TE MLS H+LP+FPQI M D+ L 
Sbjct: 480  PHDHKIIGLRSKERELNPTPRMFALMSHLMRVYVVITESMLSEHILPHFPQITMTDDLLS 539

Query: 1542 IQQK-FVSLTTPMAKDHDTHV----TYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSE 1378
            + +K + ++    A    + +    T  +++DF+KWN  MR++ T+ VF  LG +FGL +
Sbjct: 540  LTKKTYTTVRNQSANKAKSRLMASKTVCMSLDFEKWNGHMRQEATLHVFKSLGELFGLDD 599

Query: 1377 LYNRTYDIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAM 1201
            LY+ TYDIFK SY YL +G+Y+P    NG    + PLS+ G +GG+EGLRQKGWTI + +
Sbjct: 600  LYHVTYDIFKESYFYLADGSYVPVFNANGDFAPEPPLSFTGHKGGQEGLRQKGWTIFTVV 659

Query: 1200 DLYNICKEHSLTFKIIGGGDNQVLIITMPKGP---------NGLAGTHNRMERFLSDLDE 1048
             L  IC EH+ ++KI+G GDNQVL +TM              G+      ++   SDL E
Sbjct: 660  GLDKICSEHNCSYKIMGMGDNQVLQLTMYTNKVDIQGAPTEQGMKDMQRTLKNVFSDLLE 719

Query: 1047 KMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFG 868
                 GLPLK  ETW+S  LF Y KY ++KGV L   +K   R F  SN ++MT ENMF 
Sbjct: 720  TFNSLGLPLKPLETWISEDLFVYGKYPVWKGVPLSMDIKKIMRIFSNSNQEMMTAENMFN 779

Query: 867  TLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQVQ-LSGMS 691
            T+  + Q+         V ++      +     L ++HP LG+ + + L +Q + +  + 
Sbjct: 780  TVGGNAQAATQASPVLGVSYMIGLFMMSVCADDLLDYHPLLGEGLLKSLADQPEWVITIK 839

Query: 690  HKTTFKNQLTLYRLYYMIL-----LFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLM 526
             +   K +L  +R   M++     + PRVLGG  + N+F  L RGFPD +S  LS LY  
Sbjct: 840  KEKPRKTKLGTWRPSRMLIRRLMSMVPRVLGGYVSFNLFGLLMRGFPDPVSLALSQLYAY 899

Query: 525  RKHSPGD--VKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAE 352
                  D  +  ++++   P          L+ED  S++L +    +  LR + E+YLAE
Sbjct: 900  GVKDADDDALLVILKRWCDPIYMPDVSLKLLIEDVSSVNLLAPVTPTAGLRRVVEKYLAE 959

Query: 351  SDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDK 172
               I N+ FK+ ++    D  + +AD LC   T+  R LHDIM +TI+GY+ SI++K+ K
Sbjct: 960  GRAIRNQEFKDLMKTRVADVEDVIADQLCKGDTLHIRLLHDIMEATIFGYIKSIVSKVTK 1019

Query: 171  STTINKLG---SGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            S+TI  +    S  + + K+   E+N+  +  +R +V+ G     CPT  A++ R   W
Sbjct: 1020 SSTILSIAVDKSTRDPLAKVIEDERNYFKFFVWRCSVEGGNLLPDCPTDLAKSMRLNGW 1078


>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
 dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
          Length = 2089

 Score =  492 bits (1266), Expect = e-145
 Identities = 306/897 (34%), Positives = 478/897 (53%), Gaps = 35/897 (3%)
 Frame = -1

Query: 2589 ERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXXLESIMISRII 2410
            +RF + + T IG+K++ ++YP W   K +I WGD V+              E+I I  ++
Sbjct: 212  QRFLLNLSTLIGNKLNSVVYPKWALVKDLIEWGDTVLKICGNEGYKLIKNYEAICIGELL 271

Query: 2409 KSEDDG--FDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQ-NKSHYHIAQLHGLYRVWG 2239
               D     D  RF NN + D+  +   F    +EL+Q+++ + S +HI Q++GL+R+WG
Sbjct: 272  SRGDPDSIVDNFRFLNNTVSDLYLESHIFGSKAEELIQILRGHASPHHITQVYGLHRLWG 331

Query: 2238 HPEVDSLAGMKKVGDLLHQKKNVDRQLEID--CNMTFREVFFVNYYQKHGFYPPYSCPKY 2065
            HP VD+  GM+KV  +   +K V R + I    +  F+  F   Y +K+  YP     + 
Sbjct: 332  HPIVDNRKGMEKVKII--GRKEVTRDINIGKIASRYFKINFCKEYRKKYRKYPNIQPSES 389

Query: 2064 DEIKDAKIRKAHVYIVSKLESCQEIDILS-PYYNRCGWSHITINKCFPLPTGLNIASFLK 1888
            +              + KL +  +   LS  + +   W  I   K F +P   N++  + 
Sbjct: 390  N--------------LGKLINSNDPGALSVSHVDEQEWDEINFGKTFVIPETFNLSMIVS 435

Query: 1887 DRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLPDDDC 1708
            D+A+S +R++L+  V +   V +P KRRGVL W+ +  ++    L+ +N+    + DD  
Sbjct: 436  DKAISLTRSELVKNVRSKKSVMNPEKRRGVLRWINDVTLNPKEFLQKVNDGQ--MEDDHK 493

Query: 1707 TIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQIQQKF 1528
             IGL PKEREL    RMFALMS+ +R+Y V TE+MLS H+LP FPQI M D+ L + +K 
Sbjct: 494  IIGLTPKERELNPTPRMFALMSHPLRIYVVVTEQMLSEHILPMFPQITMTDSLLDLTKKT 553

Query: 1527 VS--------LTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELY 1372
             S        L  P         T  +++DF+KWN  MR++ T  +FT LG +FG+ ELY
Sbjct: 554  YSIARRQSPTLKLPSKGKLWASRTVCMSLDFEKWNGHMRKESTEPIFTCLGDLFGMKELY 613

Query: 1371 NRTYDIFKNSYVYLCNGTYLPRVVNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLY 1192
            N TYD+F  SY+YL +G+Y+P V NG+L  +  LS+ G +GG EGLRQKGWTI +   L 
Sbjct: 614  NVTYDLFSESYLYLADGSYVPIVKNGELIEEGTLSFSGHKGGMEGLRQKGWTIFTVCCLD 673

Query: 1191 NICKEHSLTFKIIGGGDNQVLIITM------------PKGPNGLAGTHNRMERFLSDLDE 1048
             IC +++ T+KI+G GDNQVL IT+             KG   + G    +     DL  
Sbjct: 674  MICSKYNCTYKIMGMGDNQVLQITVFTYSVDGAGVATDKGKREMRGI---IYTLFDDLVS 730

Query: 1047 KMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFG 868
               K GLPLK  ETW+S  L  Y KY +++GV L   LK   R F  SN D+MT+EN  G
Sbjct: 731  TFGKLGLPLKPLETWMSEDLHLYGKYPVWRGVPLCMDLKKIMRMFAYSNDDIMTLENALG 790

Query: 867  TLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQV--QLSGM 694
            T+  +  S       CL+ +I   + ++  +    ++HPFLG+ + + + + +   LSG 
Sbjct: 791  TIYGNAASATQGTCFCLLPYIVGIMMSSLCVMDFMDYHPFLGEGLNKHMASDMAWNLSGK 850

Query: 693  SHKTT----FKNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLM 526
              KT+     ++ +    +  MI + PR LGG  +LNM+  + RGFPDNLS  LSY+Y +
Sbjct: 851  DIKTSKIKIGEHGMNNSMIRLMIQIVPRTLGGYNSLNMYELMMRGFPDNLSRDLSYIYKI 910

Query: 525  RKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAESD 346
               SP   +  ++  L P       Y  L+ED  S+++ S       ++   E+++++  
Sbjct: 911  LMGSPPGFENCLKNWLAPLYMPTKNYQLLIEDVSSVNVISPRTPLAGIKQTVEKFISDPK 970

Query: 345  KIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDKST 166
            +I N  F+  +    +D  +++A +LC    +  R LHDI  +TI GY++SI++K+ KS+
Sbjct: 971  RIRNPEFRGLMSGKIRDQAQELAASLCEGDDLHIRLLHDIYEATIIGYIDSILSKVTKSS 1030

Query: 165  TINKLGSGINVIEKIRATEKNWIN---YCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            TI +L    +  + + A  K+ IN   +  +R +V+       CPT  A+  R +SW
Sbjct: 1031 TIQRLAVSKSKFDSMSAVYKDEINCFRFFLWRCSVRSDEAISPCPTTHAKKMREKSW 1087


>ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
 gb|AJG39191.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
          Length = 2079

 Score =  489 bits (1260), Expect = e-144
 Identities = 314/899 (34%), Positives = 468/899 (52%), Gaps = 37/899 (4%)
 Frame = -1

Query: 2589 ERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXXLESIMISRI- 2413
            +RF I + + +G KV+  +YP       II+WGD V+              E+I+I  + 
Sbjct: 203  QRFLIFLTSRLGQKVNQFVYPGVDLISSIISWGDDVLFNFKNEGYKLLKTYEAIVIGVLQ 262

Query: 2412 IKSEDDGFDQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSH-YHIAQLHGLYRVWGH 2236
             +  D   + G F  N + DIL +      +  +L+++++  S+ +H+ QL+GL+R WGH
Sbjct: 263  ARGNDSITNPGAFLGNTLTDILMENPKMHNFAMKLVRILETVSNPHHMTQLYGLHRAWGH 322

Query: 2235 PEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPPYSCPKYDEI 2056
            P VDS  GM KV  +  +   +   L  D    F+ +F   +  ++G YPP         
Sbjct: 323  PIVDSTKGMDKVIRIGRKDIVMRTDLSEDSGRMFKRLFAKEFKARNGMYPP--------- 373

Query: 2055 KDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNIASFLKDRAV 1876
                I   H  + +KL+           +    W  +   K F +P   N++  + D+++
Sbjct: 374  ----IYNGHTLLHTKLQEGDSSATDLRVHPLIEWDRVKFKKVFDIPETFNLSMIVADKSI 429

Query: 1875 SPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLPDDDCTIGL 1696
            SPSRT+L+ ++   G V D  KRRGV  WL +  +     LKDINE     P+D   IGL
Sbjct: 430  SPSRTELVSIIKRKGTVMDAGKRRGVNRWLNDNSLRPKEFLKDINEGK--FPEDHQIIGL 487

Query: 1695 YPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQIQQK-FVSL 1519
             PKEREL    RMFALMS+ MRVY V TE+MLS HVL  FPQI M D  L + +K +V++
Sbjct: 488  TPKERELNPTPRMFALMSHLMRVYVVITEQMLSDHVLNMFPQITMTDTLLDLTKKMYVTV 547

Query: 1518 TTPMAKDHDTHVTY-------IVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELYNRTY 1360
                     T V +        +++DF+KWN  MR+ +T  VFT LG +FGLSELYN TY
Sbjct: 548  KQQSNVGRKTGVKHRWASRVVCMSLDFEKWNGHMRKTMTKPVFTSLGDLFGLSELYNMTY 607

Query: 1359 DIFKNSYVYLCNGTYLPRV-VNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMDLYNIC 1183
            DIF+ SY YL +GTY+P+V  +G L+   P S+ G +GG EGLRQKGWT+ +   L  I 
Sbjct: 608  DIFEGSYYYLADGTYIPKVDSSGNLEVTEPYSFTGHKGGMEGLRQKGWTLYTVCCLEVIL 667

Query: 1182 KEHSLTFKIIGGGDNQVLIITMPKGP---------NGLAGTHNRMERFLSDLDEKMKKRG 1030
             +++ T+KI+G GDNQVL IT+              GL+     +     DL       G
Sbjct: 668  SKYNCTYKIMGMGDNQVLQITLYTNKIDLRGSPTVEGLSDMKTTLGLIFDDLINSFTLSG 727

Query: 1029 LPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGTLAVSY 850
            LPLK  ETW+S  L+ Y K  ++KGV L   +K   R F  SN D+MT+EN  GT++ + 
Sbjct: 728  LPLKPLETWLSEDLYLYGKTPLWKGVPLSMDMKKLMRTFPWSNADVMTLENALGTISGNA 787

Query: 849  QSIISKDHSC-----LVGWIFSRLNAAYYLKALWEHHPFLGQSIPEI-------LTNQVQ 706
             S  ++  SC     L+G I S L    +L     +HP +G S+          +    +
Sbjct: 788  SSA-TQSTSCVWLPYLIGLIMSSLCITDFLS----YHPLIGSSLSRRGSELGHWILAMSK 842

Query: 705  LSGMSHKTTFKNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLM 526
            L+   ++T  +  L+   +  +I + PR L G   LN++ ++ RGFPDNL+  +SYL  +
Sbjct: 843  LNKKKYRTEMRG-LSTDHIRLVIQIMPRTLTGHNGLNLYEFMMRGFPDNLTRDVSYLTAV 901

Query: 525  RK--HSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAE 352
             K   +P  +K VIE  L P       YS LL+D  S++L S    +  ++   ERY+ +
Sbjct: 902  LKCPSAPKWLKSVIENWLSPIFMPDTNYSTLLQDVTSVNLMSPRAPTAGIKQTVERYMTD 961

Query: 351  SDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDK 172
               I+NK F++ +    K+  E +++ LC    +  R LHDI  +TIYGY+NSI++K+ K
Sbjct: 962  ERLIKNKEFRDLMATKVKEHEEYLSECLCEGKILHIRLLHDIYEATIYGYVNSILSKVTK 1021

Query: 171  STTINKLG---SGINVIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            ++TI  L    S  +V + I   E N  NY  +R + +    +L CPT   +  R   W
Sbjct: 1022 TSTIQNLAMAKSSFDVFDVICRDEVNCYNYVIWRSSAKGMQLSLSCPTEFCKEIRLIGW 1080


>ref|YP_009362280.1| RNA-dependent RNA polymerase [Colocasia bobone disease-associated
            virus]
 gb|ALU34427.1| RNA-dependent RNA polymerase [Colocasia bobone disease-associated
            virus]
          Length = 2068

 Score =  481 bits (1239), Expect = e-142
 Identities = 331/1091 (30%), Positives = 536/1091 (49%), Gaps = 28/1091 (2%)
 Frame = -1

Query: 3189 GQFHLQSAILPVNAMLPSRTLSKYQEKMINHIKSEAECDSAEYDQISVFKDYIGYVEQSY 3010
            G FHL+SA++P+N         +++E+       +A  D +  D   +  + +       
Sbjct: 18   GDFHLRSALVPINLERLKLGEGRWRERRAFTQMRQAFDDISVGDPAKLLSEIMSISRYEE 77

Query: 3009 PLQLSEDIKMMAMTIIASECEIFAELFQEPE---MRSCVRKVIDRSMLSSQYTYHIKYL- 2842
            P    E++ ++  T+   + EI    F       +   ++++ D     +   Y  K L 
Sbjct: 78   P----ENLPLIEETVELLQMEIDGLSFLTSPGDPLAKVLKRLKDPQTRPTSSLYGPKILF 133

Query: 2841 QKAVYVYNYLLSKRLGDEDMKLSYIRNITSGRGHINSDNTVVIYSYDDDRWVMYITRELI 2662
            Q+ +   N + S+R    D     + +  SG   I      +I   D       +   +I
Sbjct: 134  QRGLMCLNAMTSER----DYSFFDLPHDESGFPMIEIGPLRLILGGD-------LFGSII 182

Query: 2661 GWKHDGLLRITTPAILLNLCDKVQERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKV 2482
            G K    L I +  +   + DK+ ER N+ + + +G  + P +YP  ++  +I    D+ 
Sbjct: 183  GMKS---LEIFSLDVFRMIVDKLTERDNVLVASLLGRSIFPQVYPNPRNLIEIFTIFDEW 239

Query: 2481 IXXXXXXXXXXXXXLESIMISRIIKSEDDGF-DQGRFQNNIIQDILEDGIYFDPYIKELL 2305
            +              E++    ++  E   F D   F  N +  + ED          LL
Sbjct: 240  LMAKGNAGYALLKTFEALTTGVLLSHESSLFNDTELFLKNTLIGLEEDERKVALSYITLL 299

Query: 2304 QLIQNKSHYHIAQLHGLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREV 2125
            + I+N + +HI Q+ GL+R+WGHP VD+  GMKKV  +  ++K +            +E+
Sbjct: 300  RSIKNLTPHHITQIMGLFRLWGHPVVDAKKGMKKVRTIGSKRKIISDHTAKTAGRKLKEI 359

Query: 2124 FFVNYYQKHGFYPPYSCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHI 1945
            F   YY+    YP YS    D            +I+  LE+   I++  P Y+   W  I
Sbjct: 360  FMSEYYRARHQYPEYSVLDSDN-----------WIIKLLETQLPINLSDPRYHLSDWDSI 408

Query: 1944 TINKCFPLPTGLNIASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDI 1765
             I K F  P   N++  + D A+SP+R +++        VTDP  RRGVL W+ +  I+ 
Sbjct: 409  QIEKTFVSPNTFNLSMIVSDTAISPTREEILKCQAEGKPVTDPMVRRGVLKWMKDGVINC 468

Query: 1764 PGLLKDINERATGLPDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVL 1585
              LLK+I++   GL  ++  IGLYPKEREL   ARMFALMS KMR Y V TE MLS +VL
Sbjct: 469  DELLKEIDKSPLGLDLNNRIIGLYPKERELNPTARMFALMSLKMRSYVVVTENMLSENVL 528

Query: 1584 PYFPQIAMNDNFLQIQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTD 1405
             Y P + M  N L + ++ +  T+       T  T+ +N+DF+KWN  MR++ T  VF +
Sbjct: 529  RYIPGVTMTYNLLDLAKEMIHSTSSQRLQGATSRTFCINMDFEKWNLNMRKESTQYVFEN 588

Query: 1404 LGRMFGLSELYNRTYDIFKNSYVYLCNGTYLPRVVNGK--LKAQYPLSWEGDQGGKEGLR 1231
            LGRMFGL  LYN+TYDIF+NS +YL +G+Y P++  G   ++    L++ G  GG EGLR
Sbjct: 589  LGRMFGLPSLYNKTYDIFRNSLIYLADGSYTPKLSEGLECMEKDPDLAYTGHIGGFEGLR 648

Query: 1230 QKGWTIVSAMDLYNICKEHSLTFKIIGGGDNQVLIITMPK---------GPNGLAGTHNR 1078
            QKGWTI + + +  +C E  + +K++G GDNQVL++T+            P  ++   + 
Sbjct: 649  QKGWTIFTVVLIAYVCDELGIHYKLMGQGDNQVLMVTIYSQHAKLSGLDSPGSISEITSS 708

Query: 1077 MERFLSDLDEKMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNT 898
            ++   + L E     GLPLK  ETWVS + F+Y K+ I+KGV L S+LK  SR F+ SN 
Sbjct: 709  LQTLQTXLIEVFGDVGLPLKPLETWVSDTFFSYGKFPIYKGVPLCSSLKRISRVFYFSNE 768

Query: 897  DLMTIENMFGTLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILT 718
            DLMT++N  G +  + QS    D    V +  ++      L    ++HP +G   P +L 
Sbjct: 769  DLMTVDNALGAVTANSQSASMADVHPAVPYAIAKWQQLQCLNVFSKYHPLVG-GPPAVLG 827

Query: 717  NQVQLSGMSHKTTF--------KNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPD 562
                 S  +    F        +NQ +L +++  I   P+ LGG   +  F  + RGF D
Sbjct: 828  APFSFSMRTKAGEFLKFYGEPIENQRSLIKVFATI---PKTLGGLNIITYFDMIMRGFSD 884

Query: 561  NLSEWLSYLYLMRKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGAL 382
                   +L L+  HSP D++  +             Y  LL+DP S+++ S    +  +
Sbjct: 885  PPCRDYQWLSLLVDHSPADIRPYLRNWHHLLLNDSVDYLHLLQDPTSINIFSPPNSNTII 944

Query: 381  RNIAERYLAESDKIEN--KGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIY 208
            + + ++ +A+  K       F+E + +S+   VE + + L ++  I  R  HDI+GST++
Sbjct: 945  KRMIQQTIAKLPKDSEFASWFQELMGISADKAVEPIVEKLTASAEINVRLCHDILGSTLF 1004

Query: 207  GYMNSIIAKIDKSTTINKLGSG-INVIEKIRATEKNWINYCGYRLTVQFG-MKALICPTR 34
            GY +SI +K+DK+ T++++  G  +VIE +   E+   NY G+R T   G      CP+ 
Sbjct: 1005 GYADSIASKVDKTVTLSRMTVGKEDVIEALVMGERRRWNYLGWRSTSSAGEAPPSSCPSF 1064

Query: 33   TAEAWRNESWE 1
                +R++ W+
Sbjct: 1065 NIRYYRDKGWK 1075


>ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
 gb|AJG39185.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
          Length = 2098

 Score =  481 bits (1239), Expect = e-141
 Identities = 302/899 (33%), Positives = 469/899 (52%), Gaps = 31/899 (3%)
 Frame = -1

Query: 2607 LCDKVQERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXXLESI 2428
            + D   ERF + + +  G  ++P  YP+    +K+  WGD V+              E++
Sbjct: 205  ISDVYTERFLLSVGSGFGHHMNPDHYPSQSIIEKLWLWGDSVLAEFGNDGFKLLKAYEAL 264

Query: 2427 MISRIIKSEDDGFDQGR-FQNNIIQDILEDGIYFDPYIKELLQLIQN-KSHYHIAQLHGL 2254
             I  I           R F  N I D+L +   ++ ++  LL+L ++ +S +H+ QL+G+
Sbjct: 265  CIGTIQSRHSSQIIGCRTFLENTINDLLLEDSRYEHHVILLLELFESVESPHHMTQLYGM 324

Query: 2253 YRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQ--LEIDCNMTFREVFFVNYYQKHGFYPPY 2080
            +R+WGHP VDS  GM KV  +L  +K + R   + +D   +F+ +F   Y +K+G YP +
Sbjct: 325  HRIWGHPIVDSTKGMSKV--MLIGRKEISRSGVVAVDVGRSFKIMFCREYRKKNGVYPKF 382

Query: 2079 SCPKYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTGLNIA 1900
                  ++ +A  +     + S+L S  E            W  ++ +KCF +P   N++
Sbjct: 383  -VDNGSQLCEAMKKNDGSILDSRLMSNAE------------WDELSFDKCFEIPETFNLS 429

Query: 1899 SFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERATGLP 1720
              + D+++S +R++L   V     V +  KRRGVL W+ +Q I     LK +N+     P
Sbjct: 430  MVVADKSISLTRSELRENVRRRKTVMNQEKRRGVLRWINDQSIHPREFLKQVNDG--DFP 487

Query: 1719 DDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDNFLQI 1540
            DD   IGL PKEREL    RMFALMS+ MR+Y V TE+MLS  VL  FPQI M D+ L +
Sbjct: 488  DDHKIIGLTPKERELNPTPRMFALMSHLMRIYVVVTEQMLSDEVLGMFPQITMTDSLLDL 547

Query: 1539 QQKFVSLTTPMAKDHD--------THVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGL 1384
             +K  S   P +            T  T  +++DF+KWN  MR + T  VF  LG +FGL
Sbjct: 548  TKKLYSTVKPQSDGASVRRRNKTWTSKTVCISLDFEKWNGHMRYESTYHVFKALGELFGL 607

Query: 1383 SELYNRTYDIFKNSYVYLCNGTYLPRVVNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSA 1204
              LYNRTY+IF+ S +YL +G+YLPR    ++  + PLS+ G +GG EGLRQKGWTI + 
Sbjct: 608  PNLYNRTYEIFQESLIYLADGSYLPRYSGNEMIMEEPLSFTGHKGGMEGLRQKGWTIFTV 667

Query: 1203 MDLYNICKEHSLTFKIIGGGDNQVLIITM------PKGPNGLAGTHN---RMERFLSDLD 1051
              L  +C +++ T+KI+G GDNQVL IT+        G    AG++     +E   +DL 
Sbjct: 668  CGLNMVCSKYNCTYKIMGMGDNQVLQITLYTYKVAASGEATEAGSYEMKLTLESLFADLI 727

Query: 1050 EKMKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMF 871
               ++ GLPLK  ETW+S  L+ Y KY + +GV L   LK   R FH SN D+MTIEN  
Sbjct: 728  YTFRQLGLPLKPLETWMSEDLYLYGKYPLLRGVPLSMDLKKIMRMFHNSNDDVMTIENGM 787

Query: 870  GTLAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEIL----TNQVQL 703
            GT+  +  S        +V ++     A+Y      E+HP LG  I + +    T  + +
Sbjct: 788  GTVYGNAASATQLSCCSIVPYMVGMFMASYCASCFLEYHPLLGHGILKEVEAKSTWDLFM 847

Query: 702  SGMSHK--TTFKNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLY- 532
             G   +     +    +  L  ++ L PR LGG  +LN+F  + RGFPDNLS  L+Y+Y 
Sbjct: 848  PGKPRQFIPIGRRTFNIQCLRLLMQLVPRTLGGYNSLNIFEIIMRGFPDNLSRDLTYIYQ 907

Query: 531  LMRKHSPGDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAE 352
            ++R      +   +   + P       +  L+ED  S++L S    S  +R   E+++  
Sbjct: 908  IVRLDKRDALDEALTNWIHPIYMPDKNFKLLIEDVSSVNLLSPRSPSSGIRQAVEKFIGS 967

Query: 351  SDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDK 172
               ++N  FK+ +    K   + +A+ LCS   I  R +HDI  STI GY++ I++K+ K
Sbjct: 968  GRTVKNLEFKDLMNSKIKHQADMLAEKLCSGSDIHIRLMHDIYASTIIGYVDGILSKVTK 1027

Query: 171  STTINKLGSGIN---VIEKIRATEKNWINYCGYRLTVQFGMKALICPTRTAEAWRNESW 4
            ++TI +L    N   +++ +   E N+  +  +R + +   +   CPT  A+  R+ESW
Sbjct: 1028 ASTIQRLAVATNEKDIMQVVVNDEINFFRFFLWRSSTRPNNEISECPTEMAKRLRSESW 1086


>gb|ARJ54297.1| RNA-dependent RNA polymerase [Potato yellow dwarf nucleorhabdovirus]
          Length = 1944

 Score =  472 bits (1215), Expect = e-139
 Identities = 284/867 (32%), Positives = 462/867 (53%), Gaps = 26/867 (2%)
 Frame = -1

Query: 2613 LNLCDKVQERFNIQMITDIGSKVSPLIYPTWQDTKKIIAWGDKVIXXXXXXXXXXXXXLE 2434
            +N  DKVQER NI + T +   + P + P+ Q   +++   D+++              E
Sbjct: 224  INASDKVQERHNIMVYTAVCHPIMPTLSPSTQLVMRVLEVFDRLLQHLGNDGYSDVSTFE 283

Query: 2433 SIMISRIIKSEDDGF--DQGRFQNNIIQDILEDGIYFDPYIKELLQLIQNKSHYHIAQLH 2260
            ++++  II  ++     + G F  +I+ D    G    PY++E+  L+ + S   +A LH
Sbjct: 284  AMIVGIIIDRDEPDLVLEPGEFSRSILDDTSAQG---RPYVEEMKSLLMDLSVDQLADLH 340

Query: 2259 GLYRVWGHPEVDSLAGMKKVGDLLHQKKNVDRQLEIDCNMTFREVFFVNYYQKHGFYPPY 2080
            GLYR+WGHP +D   G+ K+ ++  ++K  D  L       F+E+FF NY  KHGFYPP+
Sbjct: 341  GLYRIWGHPVIDIDGGLAKMRNVSLKQKITDASLGRTVGQKFKEMFFKNYRSKHGFYPPH 400

Query: 2079 SCP----KYDEIKDAKIRKAHVYIVSKLESCQEIDILSPYYNRCGWSHITINKCFPLPTG 1912
            S P    + DE +D ++  +  Y+ + L + +     +  Y+   W  +TI K F +P  
Sbjct: 401  SLPGDQTESDE-EDDEMGISSTYLTTCLATGKPFSTSNIGYSLEDWDLVTIKKTFEIPYS 459

Query: 1911 LNIASFLKDRAVSPSRTDLIHMVVNNGRVTDPFKRRGVLMWLANQPIDIPGLLKDINERA 1732
             NI   +KD+A+SP+R++L H +V  G V +   RR +L  +A     +   L  +   A
Sbjct: 460  WNIVHTIKDKAISPNRSELYHNLVAKGHVFNQNMRRVILKTIATPMKPMREFLGSV--AA 517

Query: 1731 TGLPDDDCTIGLYPKERELKLQARMFALMSYKMRVYFVTTEEMLSHHVLPYFPQIAMNDN 1552
             GL      IGLYPKERELK+  R F+LMS+++R+YF  TE++L+  +L YFP+I M+ N
Sbjct: 518  VGLALIFLIIGLYPKERELKVLPRFFSLMSHELRLYFTATEQLLNDKILKYFPEITMSLN 577

Query: 1551 FLQIQQKFVSLTTPMAKDHDTHVTYIVNIDFKKWNQQMRRDITVGVFTDLGRMFGLSELY 1372
             L +Q+K   ++    KD+ T VTY+VN+DF KWNQQMR++I   VF  LG +FGL  L+
Sbjct: 578  LLDMQKKMGKMSGKQ-KDNSTTVTYVVNMDFVKWNQQMRKEICTHVFRPLGELFGLPRLF 636

Query: 1371 NRTYDIFKNSYVYLCNG--TYLPRVVNGKLKAQYPLSWEGDQGGKEGLRQKGWTIVSAMD 1198
             RT+++ +   +YL +G    +P    G +      SW  D  GKEGLRQKGWTI++  D
Sbjct: 637  ERTHELLEQCVIYLSSGERDLIPDPETG-IVIDRIYSWCRDGSGKEGLRQKGWTIMTDCD 695

Query: 1197 LYNICKEHSLTFKIIGGGDNQVLIITMPK---------GPNGLAGTHNRMERFLSDLDEK 1045
            +  I     L   ++GGGDNQVL +T+              G      +M  F+ +L   
Sbjct: 696  IKLIADRLGLNASLVGGGDNQVLTVTLTTADIDENGNISAEGKRKIKEKMRTFMEELQRH 755

Query: 1044 MKKRGLPLKIGETWVSSSLFAYNKYMIFKGVQLPSTLKLASRCFHLSNTDLMTIENMFGT 865
              +RGLPLK  ETW S+SLF YNK+M   G  L + LK  SRCF  SN+ +M+   M  +
Sbjct: 756  FDRRGLPLKTSETWTSTSLFMYNKHMYHNGRPLRTVLKQVSRCFPFSNSSIMSTALMCNS 815

Query: 864  LAVSYQSIISKDHSCLVGWIFSRLNAAYYLKALWEHHPFLGQSIPEILTNQVQLSGMSHK 685
            ++ + ++ + K+H  +       L   Y  +     +P    +   IL+ +  ++    +
Sbjct: 816  VSTTLKATMQKEHYLMGVLTLKTLWGLYISELAVNMNPLFYSTRGCILSGKYVITRDGRE 875

Query: 684  ----TTFKNQLTLYRLYYMILLFPRVLGGAGTLNMFSYLSRGFPDNLSEWLSYLYLMRKH 517
                 T +N+ T +     IL  P V+GG G +N F+   RGFPD ++E   +L+L R +
Sbjct: 876  EESSVTERNRETFWA---KILYLPSVMGGPGIVNCFNLTQRGFPDPVTE--GFLFLQRLY 930

Query: 516  SP-----GDVKYVIEQILRPTKRSMPKYSKLLEDPCSLSLDSAEIGSGALRNIAERYLAE 352
            S        +   I  +L  + +  P + KL+EDP SLS D+    +  +R  A   + +
Sbjct: 931  SEVHMINPRLGAAIHTLLGMSFKKEPNFEKLVEDPASLSHDAPSHSTAVMREKARSAVMD 990

Query: 351  SDKIENKGFKEFLQLSSKDDVEKMADTLCSNVTIIPRELHDIMGSTIYGYMNSIIAKIDK 172
                 NK F + ++++ K+   +   +LCS   + P+ LH+I  +++YG  NS+++++DK
Sbjct: 991  MAAGVNKEFVDLMKVADKNKELEFYKSLCSGEELDPKVLHEIAKASMYGVTNSLLSRVDK 1050

Query: 171  STTINKLGSGINVIEKIRATEKNWINY 91
            + TI ++   ++V+  +   E+N+I Y
Sbjct: 1051 TRTIKRMNETVSVVSDMAKAEENYIGY 1077