BLASTX nr result

ID: Chrysanthemum22_contig00029556 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00029556
         (506 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_022039444.1| DNA polymerase I B, chloroplastic/mitochondr...    93   1e-18
gb|PLY79518.1| hypothetical protein LSAT_1X29100 [Lactuca sativa]      92   3e-18
ref|XP_023771518.1| DNA polymerase I A, chloroplastic/mitochondr...    92   3e-18
gb|KVH99126.1| 3'-5' exonuclease domain-containing protein [Cyna...    90   9e-18

>ref|XP_022039444.1| DNA polymerase I B, chloroplastic/mitochondrial [Helianthus annuus]
 gb|OTG26474.1| putative DNA-directed DNA-polymerase, family A, mitochondria, DNA
           polymerase A [Helianthus annuus]
          Length = 1142

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 20/122 (16%)
 Frame = +3

Query: 180 MALTTPTNSL-------WFCHXXXXXXXXXXXXXX-------------WQLQSPNSTRDR 299
           MA T+PTN+        W CH                           WQLQ+ +  ++R
Sbjct: 1   MAFTSPTNTFKKPPPYFWLCHSPPRSSSSSSSCRSIWSSSVSKKALQRWQLQNTHGKKER 60

Query: 300 FCNVTMVFNPFGVNSRSNFNTMGFDESERYARMKLQTSPSDYRLRIDSTRGNSYARMIPF 479
           FCN+ M F+PFG NSR N +TM FD S+RYA M    S +D+RL ++S+RGNSYARM+  
Sbjct: 61  FCNIAMGFSPFGYNSRLNISTMAFDGSQRYANMAHNQSCADFRLHVESSRGNSYARMLRR 120

Query: 480 GT 485
           G+
Sbjct: 121 GS 122


>gb|PLY79518.1| hypothetical protein LSAT_1X29100 [Lactuca sativa]
          Length = 1076

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 49/124 (39%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
 Frame = +3

Query: 180 MALTTPTNSL-------WFCHXXXXXXXXXXXXXX---------------WQLQSPNSTR 293
           MA  TPTN+        WFCH                             WQ+Q+ ++T+
Sbjct: 3   MAFATPTNTFKKPPSYFWFCHPCPRSPTSIVTSSSCRSMRSSDSNKSLYRWQVQNLHTTK 62

Query: 294 DRFCNVTMVFNPFGVNSRSNFNTMGFDESERYARMKLQTSPSDYRLRIDSTRGNSYARMI 473
           DRFC+ +M   PFG NS SN +TM FDES RYA  +   S +D+RL ++S  GNSYARM+
Sbjct: 63  DRFCSTSMALTPFGFNSWSNVSTMSFDESRRYAYTRNNQSYADFRLLVESKSGNSYARMV 122

Query: 474 PFGT 485
           P G+
Sbjct: 123 PHGS 126


>ref|XP_023771518.1| DNA polymerase I A, chloroplastic/mitochondrial-like [Lactuca
           sativa]
          Length = 1107

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 49/124 (39%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
 Frame = +3

Query: 180 MALTTPTNSL-------WFCHXXXXXXXXXXXXXX---------------WQLQSPNSTR 293
           MA  TPTN+        WFCH                             WQ+Q+ ++T+
Sbjct: 3   MAFATPTNTFKKPPSYFWFCHPCPRSPTSIVTSSSCRSMRSSDSNKSLYRWQVQNLHTTK 62

Query: 294 DRFCNVTMVFNPFGVNSRSNFNTMGFDESERYARMKLQTSPSDYRLRIDSTRGNSYARMI 473
           DRFC+ +M   PFG NS SN +TM FDES RYA  +   S +D+RL ++S  GNSYARM+
Sbjct: 63  DRFCSTSMALTPFGFNSWSNVSTMSFDESRRYAYTRNNQSYADFRLLVESKSGNSYARMV 122

Query: 474 PFGT 485
           P G+
Sbjct: 123 PHGS 126


>gb|KVH99126.1| 3'-5' exonuclease domain-containing protein [Cynara cardunculus
           var. scolymus]
          Length = 992

 Score = 90.1 bits (222), Expect = 9e-18
 Identities = 55/145 (37%), Positives = 71/145 (48%), Gaps = 37/145 (25%)
 Frame = +3

Query: 180 MALTTPTNS-------LWFCHXXXXXXXXXXXXXX----------------------WQL 272
           MA TTPTN+       LWFCH                                    WQ 
Sbjct: 1   MAFTTPTNTFKKPPSYLWFCHSCPRSTTSMVSSSSSYSPSSCRSVWSSSDSNKPLYRWQS 60

Query: 273 QSPNSTRDRFCNVTMVFNPFGVNSRSNFNTMGFDESERYARMKLQTSPSDYRLRIDSTRG 452
           Q+P S +DRFCN++MVF+ +  NS SN +TM FDES RY       S +D+RL ++S RG
Sbjct: 61  QNPLSKKDRFCNISMVFSRY--NSWSNISTMSFDESRRYVNSMNNQSCADFRLHVESRRG 118

Query: 453 NSYARMIPFG--------TPKTEAH 503
           NSYA+M+P+G        TP  +AH
Sbjct: 119 NSYAQMVPWGNKDGNTYITPVLDAH 143


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