BLASTX nr result
ID: Chrysanthemum22_contig00028793
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00028793
(1038 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|OTF95291.1| putative nuclear RNA polymerase D1B [Helianthus a... 258 9e-74
ref|XP_022012121.1| DNA-directed RNA polymerase V subunit 1-like... 258 9e-74
ref|XP_021981591.1| LOW QUALITY PROTEIN: DNA-directed RNA polyme... 174 1e-44
gb|OTG37776.1| putative DNA-directed RNA polymerase, subunit bet... 174 1e-44
ref|XP_023733016.1| DNA-directed RNA polymerase V subunit 1 [Lac... 152 6e-37
gb|PLY74549.1| hypothetical protein LSAT_7X31901 [Lactuca sativa] 152 6e-37
emb|CDY07630.1| BnaA03g18810D [Brassica napus] 148 1e-35
ref|XP_022571716.1| DNA-directed RNA polymerase V subunit 1-like... 145 2e-34
ref|XP_013734544.1| DNA-directed RNA polymerase V subunit 1-like... 143 5e-34
ref|XP_009133402.1| PREDICTED: DNA-directed RNA polymerase V sub... 143 5e-34
ref|XP_019066486.1| PREDICTED: DNA-directed RNA polymerase V sub... 136 1e-31
ref|XP_018476064.1| PREDICTED: DNA-directed RNA polymerase V sub... 136 1e-31
ref|XP_013628526.1| PREDICTED: DNA-directed RNA polymerase V sub... 135 2e-31
ref|XP_013717052.1| DNA-directed RNA polymerase V subunit 1-like... 134 7e-31
ref|XP_018476063.1| PREDICTED: DNA-directed RNA polymerase V sub... 132 3e-30
ref|XP_015056787.1| PREDICTED: DNA-directed RNA polymerase V sub... 132 3e-30
gb|KVH94774.1| Nucleic acid-binding, OB-fold, partial [Cynara ca... 131 6e-30
ref|XP_013628527.1| PREDICTED: DNA-directed RNA polymerase V sub... 129 4e-29
ref|XP_019225779.1| PREDICTED: DNA-directed RNA polymerase V sub... 129 5e-29
ref|XP_019225778.1| PREDICTED: DNA-directed RNA polymerase V sub... 126 3e-28
>gb|OTF95291.1| putative nuclear RNA polymerase D1B [Helianthus annuus]
Length = 2146
Score = 258 bits (659), Expect = 9e-74
Identities = 167/402 (41%), Positives = 212/402 (52%), Gaps = 59/402 (14%)
Frame = -2
Query: 1034 GSNNPQKDVEPSEP-WGTKKDDTA----AAASGWGTKKPDTNTEKGSSWGQKVAKADEAG 870
GS+ QK V EP WG KK++T + + WG +K T T GS WGQK DE+G
Sbjct: 1508 GSSWGQKVVAADEPGWGGKKNETDTNKNSGSGSWG-QKVFTETGLGSGWGQKSVAEDESG 1566
Query: 869 WGSKKSDDTENGSGSVAGSWGQKV-------------VSGIEAGWGAKKMENETEKGSGS 729
WG KKSD N S AGSWGQKV V+ E GWG KK + +T K SG+
Sbjct: 1567 WGGKKSDFNTN-KNSGAGSWGQKVITEDSGSGWGQKAVTADEPGWGKKKSQTDTNKSSGA 1625
Query: 728 GSWGQKAISKNESG--WGT-ERTENEAVWGSKKPETEKGSGSGSWGQKVV---SGK---- 579
G+WGQKAI++ +SG WG E T +E WG KK ET+K SGSG WGQKVV SG
Sbjct: 1626 GTWGQKAITEKDSGSGWGQKEVTADEPGWGGKKSETDKSSGSGMWGQKVVIEDSGSGWGK 1685
Query: 578 ------EGGWGADKLVNDSEKGAGSGSSWGQKVVTP---------SQPQAEVAKDSGQWG 444
E GWG K D+ K +G+G+ WGQKVV S+P + + GQWG
Sbjct: 1686 KVVPADEPGWGGKKSETDTNKSSGAGT-WGQKVVKSDGPGWNSKSSEPVDQTGPNDGQWG 1744
Query: 443 SKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKK------ 282
K+SW A GSS++WG + +T P+WN+G + + E + W+KK ++K
Sbjct: 1745 KKDSWNAAGGSSSSWGIQKTNT---PSWNKGVEAASESENKTEGSDWSKKLEEKTDSQGG 1801
Query: 281 -DQFASQVEDSSKTNQWGKKE------AGSSASSWGKPVQKTDAPSWN--XXXXXXXXXX 129
Q QV + WG+K+ GS+ QK + WN
Sbjct: 1802 WGQKKDQVSGTDTQGGWGQKKDQVSGTDGSTEKGHEDGEQKPGSWGWNRKVEQKGDQGGG 1861
Query: 128 XXXXXXXGPKRDHPARPVGGPNDGPRA-VVPFTATKQRLDIF 6
GPKRD PARPVGGPNDGPR+ VPFTAT+QRLD+F
Sbjct: 1862 WKKKEGWGPKRDRPARPVGGPNDGPRSGGVPFTATRQRLDLF 1903
Score = 222 bits (566), Expect = 3e-61
Identities = 148/356 (41%), Positives = 183/356 (51%), Gaps = 63/356 (17%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGT--KKDDTAAAASGWGTKKPDTNTEKGSS-WGQKVAKADEAGW 867
WG+ Q DVEPS WG+ KKDD SGWG K D TEK S WG KV+K DE W
Sbjct: 1425 WGATKSQNDVEPSGSWGSLGKKDDNQ---SGWGAKS-DNQTEKDSGGWGHKVSKGDEHAW 1480
Query: 866 GSKKS---------------DDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSG 732
G+KKS ++TE GSGS SWGQKVV+ E GWG KK E +T K SG
Sbjct: 1481 GAKKSQNEGDGPGWGGNSSRNNTEKGSGS---SWGQKVVAADEPGWGGKKNETDTNKNSG 1537
Query: 731 SGSWGQKAISKN--ESGWGTER-TENEAVWGSKKPE--TEKGSGSGSWGQKV-------- 591
SGSWGQK ++ SGWG + E+E+ WG KK + T K SG+GSWGQKV
Sbjct: 1538 SGSWGQKVFTETGLGSGWGQKSVAEDESGWGGKKSDFNTNKNSGAGSWGQKVITEDSGSG 1597
Query: 590 -----VSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQP-----QAEVAKDSGQWGS 441
V+ E GWG K D+ K +G+G +WGQK +T Q EV D WG
Sbjct: 1598 WGQKAVTADEPGWGKKKSQTDTNKSSGAG-TWGQKAITEKDSGSGWGQKEVTADEPGWGG 1656
Query: 440 KESWKAQTGSSAAWGKKA--EDT---------PA-VPTW--NQGQKTVEKGEQAGSWTSW 303
K+S ++ S WG+K ED+ PA P W + + K AG+W
Sbjct: 1657 KKSETDKSSGSGMWGQKVVIEDSGSGWGKKVVPADEPGWGGKKSETDTNKSSGAGTWGQK 1716
Query: 302 AKKDDKKDQFASQVEDSSKT----NQWGKKE----AGSSASSWGKPVQKTDAPSWN 159
K D + E +T QWGKK+ AG S+SSWG +QKT+ PSWN
Sbjct: 1717 VVKSDGPGWNSKSSEPVDQTGPNDGQWGKKDSWNAAGGSSSSWG--IQKTNTPSWN 1770
>ref|XP_022012121.1| DNA-directed RNA polymerase V subunit 1-like [Helianthus annuus]
Length = 2083
Score = 258 bits (659), Expect = 9e-74
Identities = 167/402 (41%), Positives = 212/402 (52%), Gaps = 59/402 (14%)
Frame = -2
Query: 1034 GSNNPQKDVEPSEP-WGTKKDDTA----AAASGWGTKKPDTNTEKGSSWGQKVAKADEAG 870
GS+ QK V EP WG KK++T + + WG +K T T GS WGQK DE+G
Sbjct: 1445 GSSWGQKVVAADEPGWGGKKNETDTNKNSGSGSWG-QKVFTETGLGSGWGQKSVAEDESG 1503
Query: 869 WGSKKSDDTENGSGSVAGSWGQKV-------------VSGIEAGWGAKKMENETEKGSGS 729
WG KKSD N S AGSWGQKV V+ E GWG KK + +T K SG+
Sbjct: 1504 WGGKKSDFNTN-KNSGAGSWGQKVITEDSGSGWGQKAVTADEPGWGKKKSQTDTNKSSGA 1562
Query: 728 GSWGQKAISKNESG--WGT-ERTENEAVWGSKKPETEKGSGSGSWGQKVV---SGK---- 579
G+WGQKAI++ +SG WG E T +E WG KK ET+K SGSG WGQKVV SG
Sbjct: 1563 GTWGQKAITEKDSGSGWGQKEVTADEPGWGGKKSETDKSSGSGMWGQKVVIEDSGSGWGK 1622
Query: 578 ------EGGWGADKLVNDSEKGAGSGSSWGQKVVTP---------SQPQAEVAKDSGQWG 444
E GWG K D+ K +G+G+ WGQKVV S+P + + GQWG
Sbjct: 1623 KVVPADEPGWGGKKSETDTNKSSGAGT-WGQKVVKSDGPGWNSKSSEPVDQTGPNDGQWG 1681
Query: 443 SKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKK------ 282
K+SW A GSS++WG + +T P+WN+G + + E + W+KK ++K
Sbjct: 1682 KKDSWNAAGGSSSSWGIQKTNT---PSWNKGVEAASESENKTEGSDWSKKLEEKTDSQGG 1738
Query: 281 -DQFASQVEDSSKTNQWGKKE------AGSSASSWGKPVQKTDAPSWN--XXXXXXXXXX 129
Q QV + WG+K+ GS+ QK + WN
Sbjct: 1739 WGQKKDQVSGTDTQGGWGQKKDQVSGTDGSTEKGHEDGEQKPGSWGWNRKVEQKGDQGGG 1798
Query: 128 XXXXXXXGPKRDHPARPVGGPNDGPRA-VVPFTATKQRLDIF 6
GPKRD PARPVGGPNDGPR+ VPFTAT+QRLD+F
Sbjct: 1799 WKKKEGWGPKRDRPARPVGGPNDGPRSGGVPFTATRQRLDLF 1840
Score = 222 bits (566), Expect = 3e-61
Identities = 148/356 (41%), Positives = 183/356 (51%), Gaps = 63/356 (17%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGT--KKDDTAAAASGWGTKKPDTNTEKGSS-WGQKVAKADEAGW 867
WG+ Q DVEPS WG+ KKDD SGWG K D TEK S WG KV+K DE W
Sbjct: 1362 WGATKSQNDVEPSGSWGSLGKKDDNQ---SGWGAKS-DNQTEKDSGGWGHKVSKGDEHAW 1417
Query: 866 GSKKS---------------DDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSG 732
G+KKS ++TE GSGS SWGQKVV+ E GWG KK E +T K SG
Sbjct: 1418 GAKKSQNEGDGPGWGGNSSRNNTEKGSGS---SWGQKVVAADEPGWGGKKNETDTNKNSG 1474
Query: 731 SGSWGQKAISKN--ESGWGTER-TENEAVWGSKKPE--TEKGSGSGSWGQKV-------- 591
SGSWGQK ++ SGWG + E+E+ WG KK + T K SG+GSWGQKV
Sbjct: 1475 SGSWGQKVFTETGLGSGWGQKSVAEDESGWGGKKSDFNTNKNSGAGSWGQKVITEDSGSG 1534
Query: 590 -----VSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQP-----QAEVAKDSGQWGS 441
V+ E GWG K D+ K +G+G +WGQK +T Q EV D WG
Sbjct: 1535 WGQKAVTADEPGWGKKKSQTDTNKSSGAG-TWGQKAITEKDSGSGWGQKEVTADEPGWGG 1593
Query: 440 KESWKAQTGSSAAWGKKA--EDT---------PA-VPTW--NQGQKTVEKGEQAGSWTSW 303
K+S ++ S WG+K ED+ PA P W + + K AG+W
Sbjct: 1594 KKSETDKSSGSGMWGQKVVIEDSGSGWGKKVVPADEPGWGGKKSETDTNKSSGAGTWGQK 1653
Query: 302 AKKDDKKDQFASQVEDSSKT----NQWGKKE----AGSSASSWGKPVQKTDAPSWN 159
K D + E +T QWGKK+ AG S+SSWG +QKT+ PSWN
Sbjct: 1654 VVKSDGPGWNSKSSEPVDQTGPNDGQWGKKDSWNAAGGSSSSWG--IQKTNTPSWN 1707
>ref|XP_021981591.1| LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1-like
[Helianthus annuus]
Length = 1794
Score = 174 bits (441), Expect = 1e-44
Identities = 116/316 (36%), Positives = 148/316 (46%), Gaps = 47/316 (14%)
Frame = -2
Query: 1037 WGSN-NPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKAD-EAGWG 864
WG+ P+ WG T ++GWGT K + E SW K D E WG
Sbjct: 1307 WGTGPTPEDGTSSGGGWGGAVKTTPTTSAGWGTTKSQKDVEPSGSWSLSGEKEDNEPVWG 1366
Query: 863 SKKSDD-TENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGS---------------- 735
SKKS++ T GSGS GSWGQ VV G GWGAKK +NETE+GS
Sbjct: 1367 SKKSENKTAMGSGS--GSWGQTVVKGDGPGWGAKKSDNETEEGSGAWGQVVAKGDESRWG 1424
Query: 734 ------------GSGSWGQKAISKNESGWGTERTENEA-------------VWGSKKP-- 636
GSG WGQK + ++ SGWG +++ENE VWGSK+
Sbjct: 1425 AKESQNEAAKELGSGLWGQKVVKRDGSGWGGKKSENETGTWVQKASNWDEPVWGSKESVN 1484
Query: 635 ETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDS 456
ET GSGSGSWGQKVV+ E G K V+D+ KG+GS SSWGQKV V D
Sbjct: 1485 ETATGSGSGSWGQKVVTADEPRRGGKKSVDDTNKGSGS-SSWGQKV---------VKSDG 1534
Query: 455 GQWGSKESWKAQTGSSAAWGKKAEDTPAVP-TWNQGQKTVEKGEQAGSWTSWAKKDDKKD 279
W SK + + +K D P +W K +K ++ G W K+D
Sbjct: 1535 PGWNSKPGGPPMDCADGSTDEKGHDAEQKPGSWGWNHKAEQKPDEGGGWKKKEGWGPKRD 1594
Query: 278 QFASQVEDSSKTNQWG 231
+ A V S+ ++ G
Sbjct: 1595 RPARPVGGSNDGSRLG 1610
Score = 164 bits (416), Expect = 3e-41
Identities = 123/367 (33%), Positives = 160/367 (43%), Gaps = 41/367 (11%)
Frame = -2
Query: 980 KDDTAAAASGWGT-KKPDTNTEKGSSWGQ--KVAKADEAGWGSKKSDDTENGSGSVAGSW 810
+D S WGT P+ T G WG K AGWG+ KS SGS + S
Sbjct: 1297 EDGMDVEQSTWGTGPTPEDGTSSGGGWGGAVKTTPTTSAGWGTTKSQKDVEPSGSWSLS- 1355
Query: 809 GQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGTERTENEAVWGSKKPET 630
G+K + E WG+KK EN+T GSGSGSWGQ + + GW G+KK +
Sbjct: 1356 GEKEDN--EPVWGSKKSENKTAMGSGSGSWGQTVVKGDGPGW-----------GAKKSDN 1402
Query: 629 EKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQ 450
E GSG+WGQ V G E WGA + N++ K GSG WGQKVV +D
Sbjct: 1403 ETEEGSGAWGQVVAKGDESRWGAKESQNEAAKELGSGL-WGQKVVK---------RDGSG 1452
Query: 449 WGSKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKK----DDKK 282
WG K+S + +TG+ W +KA + P W + E +GS SW +K D+ +
Sbjct: 1453 WGGKKS-ENETGT---WVQKASNWDE-PVWGSKESVNETATGSGSG-SWGQKVVTADEPR 1506
Query: 281 DQFASQVEDSSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXG- 105
V+D++K GS +SSWG+ V K+D P WN
Sbjct: 1507 RGGKKSVDDTNK---------GSGSSSWGQKVVKSDGPGWNSKPGGPPMDCADGSTDEKG 1557
Query: 104 ---------------------------------PKRDHPARPVGGPNDGPRAVVPFTATK 24
PKRD PARPVGG NDG R +
Sbjct: 1558 HDAEQKPGSWGWNHKAEQKPDEGGGWKKKEGWGPKRDRPARPVGGSNDGSRLGGGPVTAR 1617
Query: 23 QRLDIFT 3
+RLD+FT
Sbjct: 1618 RRLDVFT 1624
>gb|OTG37776.1| putative DNA-directed RNA polymerase, subunit beta-prime [Helianthus
annuus]
Length = 1808
Score = 174 bits (441), Expect = 1e-44
Identities = 116/316 (36%), Positives = 148/316 (46%), Gaps = 47/316 (14%)
Frame = -2
Query: 1037 WGSN-NPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKAD-EAGWG 864
WG+ P+ WG T ++GWGT K + E SW K D E WG
Sbjct: 1321 WGTGPTPEDGTSSGGGWGGAVKTTPTTSAGWGTTKSQKDVEPSGSWSLSGEKEDNEPVWG 1380
Query: 863 SKKSDD-TENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGS---------------- 735
SKKS++ T GSGS GSWGQ VV G GWGAKK +NETE+GS
Sbjct: 1381 SKKSENKTAMGSGS--GSWGQTVVKGDGPGWGAKKSDNETEEGSGAWGQVVAKGDESRWG 1438
Query: 734 ------------GSGSWGQKAISKNESGWGTERTENEA-------------VWGSKKP-- 636
GSG WGQK + ++ SGWG +++ENE VWGSK+
Sbjct: 1439 AKESQNEAAKELGSGLWGQKVVKRDGSGWGGKKSENETGTWVQKASNWDEPVWGSKESVN 1498
Query: 635 ETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDS 456
ET GSGSGSWGQKVV+ E G K V+D+ KG+GS SSWGQKV V D
Sbjct: 1499 ETATGSGSGSWGQKVVTADEPRRGGKKSVDDTNKGSGS-SSWGQKV---------VKSDG 1548
Query: 455 GQWGSKESWKAQTGSSAAWGKKAEDTPAVP-TWNQGQKTVEKGEQAGSWTSWAKKDDKKD 279
W SK + + +K D P +W K +K ++ G W K+D
Sbjct: 1549 PGWNSKPGGPPMDCADGSTDEKGHDAEQKPGSWGWNHKAEQKPDEGGGWKKKEGWGPKRD 1608
Query: 278 QFASQVEDSSKTNQWG 231
+ A V S+ ++ G
Sbjct: 1609 RPARPVGGSNDGSRLG 1624
Score = 164 bits (416), Expect = 3e-41
Identities = 123/367 (33%), Positives = 160/367 (43%), Gaps = 41/367 (11%)
Frame = -2
Query: 980 KDDTAAAASGWGT-KKPDTNTEKGSSWGQ--KVAKADEAGWGSKKSDDTENGSGSVAGSW 810
+D S WGT P+ T G WG K AGWG+ KS SGS + S
Sbjct: 1311 EDGMDVEQSTWGTGPTPEDGTSSGGGWGGAVKTTPTTSAGWGTTKSQKDVEPSGSWSLS- 1369
Query: 809 GQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGTERTENEAVWGSKKPET 630
G+K + E WG+KK EN+T GSGSGSWGQ + + GW G+KK +
Sbjct: 1370 GEKEDN--EPVWGSKKSENKTAMGSGSGSWGQTVVKGDGPGW-----------GAKKSDN 1416
Query: 629 EKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQ 450
E GSG+WGQ V G E WGA + N++ K GSG WGQKVV +D
Sbjct: 1417 ETEEGSGAWGQVVAKGDESRWGAKESQNEAAKELGSGL-WGQKVVK---------RDGSG 1466
Query: 449 WGSKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKK----DDKK 282
WG K+S + +TG+ W +KA + P W + E +GS SW +K D+ +
Sbjct: 1467 WGGKKS-ENETGT---WVQKASNWDE-PVWGSKESVNETATGSGSG-SWGQKVVTADEPR 1520
Query: 281 DQFASQVEDSSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXG- 105
V+D++K GS +SSWG+ V K+D P WN
Sbjct: 1521 RGGKKSVDDTNK---------GSGSSSWGQKVVKSDGPGWNSKPGGPPMDCADGSTDEKG 1571
Query: 104 ---------------------------------PKRDHPARPVGGPNDGPRAVVPFTATK 24
PKRD PARPVGG NDG R +
Sbjct: 1572 HDAEQKPGSWGWNHKAEQKPDEGGGWKKKEGWGPKRDRPARPVGGSNDGSRLGGGPVTAR 1631
Query: 23 QRLDIFT 3
+RLD+FT
Sbjct: 1632 RRLDVFT 1638
>ref|XP_023733016.1| DNA-directed RNA polymerase V subunit 1 [Lactuca sativa]
Length = 1990
Score = 152 bits (383), Expect = 6e-37
Identities = 129/385 (33%), Positives = 168/385 (43%), Gaps = 55/385 (14%)
Frame = -2
Query: 992 WGTKKDDTAAAASGWGTKKPDTNTEKGS-----------SWGQKVAKADEAG-WGSKKSD 849
WG K ++ A WG KKPD++T GS +WG+KV D A WG K D
Sbjct: 1423 WGKKAEEPA-----WGGKKPDSDTGAGSGSVPWGKREETAWGKKVNSGDSAAAWGKK--D 1475
Query: 848 DTENGS---------GSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKA---- 708
DT + + GS WG+K + A WG K + GSGS WG+KA
Sbjct: 1476 DTGDSAPWSKKADTGGSTPAPWGKKADTAAPAPWGKK----DDTGGSGSAPWGKKADTGV 1531
Query: 707 ISKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGA 528
+ + WG + A WG KK +T +GSGS WG+K +G WG + G
Sbjct: 1532 STPAPAPWGKKDDTGSAPWG-KKADT-RGSGSAPWGKKDDTGSVP-WGKKDDTGSAPWGK 1588
Query: 527 --GSGSS-WGQKVVTPSQPQAEVAKD----------SGQWGSKESWKAQTGSSAAWGKKA 387
+GS+ WG+K T S P KD QWG ES S +WGK
Sbjct: 1589 KDDTGSTPWGKKDDTGSAPAPWGRKDVKADEPSQVEESQWGKIES-------SGSWGKSV 1641
Query: 386 EDTPAVPTW----------NQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQ 237
+ +VP W + +K EK E W S ++ K + S ED++ T
Sbjct: 1642 QKPDSVPKWGGNNKSDEGSDWSKKVEEKTESKDGWGSQSQWGAKNPEGGSS-EDTTTTTN 1700
Query: 236 WGKKEAGSSASSWG---KPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPARPVGGP 66
G+K G+ WG KP QK D P+RD PARP GGP
Sbjct: 1701 EGEKPGGA----WGWNRKPEQKPDQGQGGWKKKEGWG----------PRRDRPARPAGGP 1746
Query: 65 NDGPR----AVVPFTATKQRLDIFT 3
NDGPR PFTA++QRLD+FT
Sbjct: 1747 NDGPRPGGGGGGPFTASRQRLDMFT 1771
Score = 124 bits (310), Expect = 3e-27
Identities = 113/334 (33%), Positives = 144/334 (43%), Gaps = 49/334 (14%)
Frame = -2
Query: 1016 KDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQ--KVAKADEAGWGSK-KSDD 846
+D S WG T GWG T T+ SWG K E WG+ K+
Sbjct: 1343 EDGNSSGGWGAAVKTTPT--DGWGAAVKSTPTDSSGSWGAAVKTTPTTEGSWGAAVKTTP 1400
Query: 845 TENGSGSVA-----------GSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISK 699
T GS A WG+K E WG KK +++T GSGS WG+ +
Sbjct: 1401 TTEGSWGAAVKATPATEGSGSGWGKKAE---EPAWGGKKPDSDTGAGSGSVPWGK----R 1453
Query: 698 NESGWG--TERTENEAVWGSK------KPETEKGSGSGS----WGQKVVSGKEGGWGADK 555
E+ WG ++ A WG K P ++K GS WG+K + WG
Sbjct: 1454 EETAWGKKVNSGDSAAAWGKKDDTGDSAPWSKKADTGGSTPAPWGKKADTAAPAPWGK-- 1511
Query: 554 LVNDSEKGAGSGSSWGQK----VVTPSQPQAEVAKDSGQ--WGSKESWKAQTGSSAAWGK 393
D G+GS + WG+K V TP+ D+G WG K + SA WGK
Sbjct: 1512 --KDDTGGSGS-APWGKKADTGVSTPAPAPWGKKDDTGSAPWGKKADTRG--SGSAPWGK 1566
Query: 392 KAEDTPAVPTWNQ----GQKTVEKGEQAGSWTSWAKKDD---------KKDQFA---SQV 261
K +DT +VP W + G K + GS T W KKDD +KD A SQV
Sbjct: 1567 K-DDTGSVP-WGKKDDTGSAPWGKKDDTGS-TPWGKKDDTGSAPAPWGRKDVKADEPSQV 1623
Query: 260 EDSSKTNQWGKKEAGSSASSWGKPVQKTDA-PSW 162
E+S QWGK E S+ SWGK VQK D+ P W
Sbjct: 1624 EES----QWGKIE---SSGSWGKSVQKPDSVPKW 1650
Score = 73.6 bits (179), Expect = 2e-10
Identities = 82/265 (30%), Positives = 106/265 (40%), Gaps = 4/265 (1%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG +KD S PWG K D +A WG KK DT + + WG+K
Sbjct: 1564 WG----KKDDTGSVPWGKKDDTGSAP---WG-KKDDTGS---TPWGKK------------ 1600
Query: 857 KSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES--GW 684
DDT GS WG+K V E ++ E++ K SGSWG K++ K +S W
Sbjct: 1601 --DDT----GSAPAPWGRKDVKADEP---SQVEESQWGKIESSGSWG-KSVQKPDSVPKW 1650
Query: 683 GTERTENEAVWGSKKPE--TEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSW 510
G +E SKK E TE G GS Q EGG D +E G G +W
Sbjct: 1651 GGNNKSDEGSDWSKKVEEKTESKDGWGSQSQWGAKNPEGGSSEDTTTTTNE-GEKPGGAW 1709
Query: 509 GQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKG 330
G +P D GQ G WK + G WG + D PA P G
Sbjct: 1710 GWNRKPEQKP------DQGQGG----WKKKEG----WGPR-RDRPARPAGGPNDGPRPGG 1754
Query: 329 EQAGSWTSWAKKDDKKDQFASQVED 255
G +T+ + D F S ++
Sbjct: 1755 GGGGPFTA---SRQRLDMFTSDEQE 1776
>gb|PLY74549.1| hypothetical protein LSAT_7X31901 [Lactuca sativa]
Length = 2538
Score = 152 bits (383), Expect = 6e-37
Identities = 129/385 (33%), Positives = 168/385 (43%), Gaps = 55/385 (14%)
Frame = -2
Query: 992 WGTKKDDTAAAASGWGTKKPDTNTEKGS-----------SWGQKVAKADEAG-WGSKKSD 849
WG K ++ A WG KKPD++T GS +WG+KV D A WG K D
Sbjct: 1415 WGKKAEEPA-----WGGKKPDSDTGAGSGSVPWGKREETAWGKKVNSGDSAAAWGKK--D 1467
Query: 848 DTENGS---------GSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKA---- 708
DT + + GS WG+K + A WG K + GSGS WG+KA
Sbjct: 1468 DTGDSAPWSKKADTGGSTPAPWGKKADTAAPAPWGKK----DDTGGSGSAPWGKKADTGV 1523
Query: 707 ISKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGA 528
+ + WG + A WG KK +T +GSGS WG+K +G WG + G
Sbjct: 1524 STPAPAPWGKKDDTGSAPWG-KKADT-RGSGSAPWGKKDDTGSVP-WGKKDDTGSAPWGK 1580
Query: 527 --GSGSS-WGQKVVTPSQPQAEVAKD----------SGQWGSKESWKAQTGSSAAWGKKA 387
+GS+ WG+K T S P KD QWG ES S +WGK
Sbjct: 1581 KDDTGSTPWGKKDDTGSAPAPWGRKDVKADEPSQVEESQWGKIES-------SGSWGKSV 1633
Query: 386 EDTPAVPTW----------NQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQ 237
+ +VP W + +K EK E W S ++ K + S ED++ T
Sbjct: 1634 QKPDSVPKWGGNNKSDEGSDWSKKVEEKTESKDGWGSQSQWGAKNPEGGSS-EDTTTTTN 1692
Query: 236 WGKKEAGSSASSWG---KPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPARPVGGP 66
G+K G+ WG KP QK D P+RD PARP GGP
Sbjct: 1693 EGEKPGGA----WGWNRKPEQKPDQGQGGWKKKEGWG----------PRRDRPARPAGGP 1738
Query: 65 NDGPR----AVVPFTATKQRLDIFT 3
NDGPR PFTA++QRLD+FT
Sbjct: 1739 NDGPRPGGGGGGPFTASRQRLDMFT 1763
Score = 124 bits (310), Expect = 3e-27
Identities = 113/334 (33%), Positives = 144/334 (43%), Gaps = 49/334 (14%)
Frame = -2
Query: 1016 KDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQ--KVAKADEAGWGSK-KSDD 846
+D S WG T GWG T T+ SWG K E WG+ K+
Sbjct: 1335 EDGNSSGGWGAAVKTTPT--DGWGAAVKSTPTDSSGSWGAAVKTTPTTEGSWGAAVKTTP 1392
Query: 845 TENGSGSVA-----------GSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISK 699
T GS A WG+K E WG KK +++T GSGS WG+ +
Sbjct: 1393 TTEGSWGAAVKATPATEGSGSGWGKKAE---EPAWGGKKPDSDTGAGSGSVPWGK----R 1445
Query: 698 NESGWG--TERTENEAVWGSK------KPETEKGSGSGS----WGQKVVSGKEGGWGADK 555
E+ WG ++ A WG K P ++K GS WG+K + WG
Sbjct: 1446 EETAWGKKVNSGDSAAAWGKKDDTGDSAPWSKKADTGGSTPAPWGKKADTAAPAPWGK-- 1503
Query: 554 LVNDSEKGAGSGSSWGQK----VVTPSQPQAEVAKDSGQ--WGSKESWKAQTGSSAAWGK 393
D G+GS + WG+K V TP+ D+G WG K + SA WGK
Sbjct: 1504 --KDDTGGSGS-APWGKKADTGVSTPAPAPWGKKDDTGSAPWGKKADTRG--SGSAPWGK 1558
Query: 392 KAEDTPAVPTWNQ----GQKTVEKGEQAGSWTSWAKKDD---------KKDQFA---SQV 261
K +DT +VP W + G K + GS T W KKDD +KD A SQV
Sbjct: 1559 K-DDTGSVP-WGKKDDTGSAPWGKKDDTGS-TPWGKKDDTGSAPAPWGRKDVKADEPSQV 1615
Query: 260 EDSSKTNQWGKKEAGSSASSWGKPVQKTDA-PSW 162
E+S QWGK E S+ SWGK VQK D+ P W
Sbjct: 1616 EES----QWGKIE---SSGSWGKSVQKPDSVPKW 1642
Score = 73.6 bits (179), Expect = 2e-10
Identities = 82/265 (30%), Positives = 106/265 (40%), Gaps = 4/265 (1%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG +KD S PWG K D +A WG KK DT + + WG+K
Sbjct: 1556 WG----KKDDTGSVPWGKKDDTGSAP---WG-KKDDTGS---TPWGKK------------ 1592
Query: 857 KSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES--GW 684
DDT GS WG+K V E ++ E++ K SGSWG K++ K +S W
Sbjct: 1593 --DDT----GSAPAPWGRKDVKADEP---SQVEESQWGKIESSGSWG-KSVQKPDSVPKW 1642
Query: 683 GTERTENEAVWGSKKPE--TEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSW 510
G +E SKK E TE G GS Q EGG D +E G G +W
Sbjct: 1643 GGNNKSDEGSDWSKKVEEKTESKDGWGSQSQWGAKNPEGGSSEDTTTTTNE-GEKPGGAW 1701
Query: 509 GQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKG 330
G +P D GQ G WK + G WG + D PA P G
Sbjct: 1702 GWNRKPEQKP------DQGQGG----WKKKEG----WGPR-RDRPARPAGGPNDGPRPGG 1746
Query: 329 EQAGSWTSWAKKDDKKDQFASQVED 255
G +T+ + D F S ++
Sbjct: 1747 GGGGPFTA---SRQRLDMFTSDEQE 1768
>emb|CDY07630.1| BnaA03g18810D [Brassica napus]
Length = 2292
Score = 148 bits (374), Expect = 1e-35
Identities = 123/393 (31%), Positives = 178/393 (45%), Gaps = 48/393 (12%)
Frame = -2
Query: 1037 WGSNNPQK-DVEPSE---PWGT---KKDDTAAAASGWGTK-KPDTNTEKG---SSWG--- 900
WGS K ++E WGT KK +T + WG++ K ++ TE G S+WG
Sbjct: 1851 WGSQAKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGACASTWGAWD 1910
Query: 899 ----QKVAKADEAGWGSKKSDDTENGSGSVAGSWGQKVVS----GIEAGWGAKKMEN-ET 747
+ + D A WGS+ +++E SGS A +WG+K G A WG++ N ET
Sbjct: 1911 KKKPETESGGDGAAWGSQAKNNSETESGSGAAAWGKKKPETESGGGGAAWGSQAKNNSET 1970
Query: 746 EKGSGSGSWGQKAISKNESG---WGTERTENE--------AVWGSKKPETEKGSGSGSWG 600
E GSG+ +WG+K G WG++ N A WG KKPETE G G+ +WG
Sbjct: 1971 ESGSGAAAWGKKKPETESGGGAAWGSQAKNNSETESGSGAAAWGKKKPETESGGGA-AWG 2029
Query: 599 QKVVSGKE-------GGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGS 441
+ + E WG K +S G G++WG + S+ Q A WGS
Sbjct: 2030 SQAKNNSETESGSGAAAWGKKKPETES---GGGGAAWGSQAKKNSESQLGAAN----WGS 2082
Query: 440 KESWKAQTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQ 264
K++ ++ GS SAAWGKK +++ A PT + +W SW + +Q
Sbjct: 2083 KDTNNSENGSDSAAWGKK-KNSEAEPT-------------SVAWGSWGQPSPPASDKDAQ 2128
Query: 263 VED-----SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPK 99
+D S K G+KE G+ S WG P ++ + K
Sbjct: 2129 EDDGNPWVSLKATNSGEKE-GNETSQWGVPNKRYPSAGSQSQGGGGGADW---------K 2178
Query: 98 RDHPARPVGGPND-GPRAVVPFTATKQRLDIFT 3
R+ P R G + GP FTAT+QR+D+FT
Sbjct: 2179 RNRPPRTPGSESILGPM----FTATRQRVDMFT 2207
Score = 98.2 bits (243), Expect = 1e-18
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 34/235 (14%)
Frame = -2
Query: 782 AGWGAK-KMENETEKGSGSGSWG--QKAISKNESG---WGTERTENE-----------AV 654
A WG++ K ++E E GSG+ +WG K S+ ESG WG++ +N
Sbjct: 1849 AAWGSQAKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGACASTWGA 1908
Query: 653 WGSKKPETEKGSGSGSWGQKVVSGKE-------GGWGADKLVNDSEKGAGSGSSWGQKVV 495
W KKPETE G +WG + + E WG K +S G G++WG +
Sbjct: 1909 WDKKKPETESGGDGAAWGSQAKNNSETESGSGAAAWGKKKPETES---GGGGAAWGSQAK 1965
Query: 494 TPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWGKKA------EDTPAVPTWNQGQKTVEK 333
S + E + WG K+ + ++G AAWG +A E W + + E
Sbjct: 1966 NNS--ETESGSGAAAWGKKKP-ETESGGGAAWGSQAKNNSETESGSGAAAWGKKKPETES 2022
Query: 332 GEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKK----EAGSSASSWGKPVQK 180
G A +W S AK + S+ E S WGKK E+G ++WG +K
Sbjct: 2023 GGGA-AWGSQAKNN-------SETESGSGAAAWGKKKPETESGGGGAAWGSQAKK 2069
Score = 71.2 bits (173), Expect = 1e-09
Identities = 58/208 (27%), Positives = 86/208 (41%), Gaps = 10/208 (4%)
Frame = -2
Query: 764 KMENETEKGSGSGSWGQKAISKNE-------SGWGTERTENEAVWGSKKPETEKGSGSGS 606
K + ETE SG +WG +A +K+E + WGT W KK ETE G G+
Sbjct: 1839 KSKFETE--SGGAAWGSQAKNKSEIESGSGAAAWGT--------WDKKKSETESGGGA-- 1886
Query: 605 WGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWK 426
WG+ N + S+WG +P+ E D WGS+
Sbjct: 1887 ------------WGSQAKKNSETESGACASTWG--AWDKKKPETESGGDGAAWGSQAKNN 1932
Query: 425 AQTGS---SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVED 255
++T S +AAWGKK +T E G +W SQ ++
Sbjct: 1933 SETESGSGAAAWGKKKPET----------------ESGGGGAAWG----------SQAKN 1966
Query: 254 SSKTNQWGKKEAGSSASSWGKPVQKTDA 171
+S+T E+GS A++WGK +T++
Sbjct: 1967 NSET------ESGSGAAAWGKKKPETES 1988
>ref|XP_022571716.1| DNA-directed RNA polymerase V subunit 1-like isoform X1 [Brassica
napus]
Length = 2059
Score = 145 bits (365), Expect = 2e-34
Identities = 121/405 (29%), Positives = 173/405 (42%), Gaps = 60/405 (14%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEP----WGTKKDD-----------------TAAAASGWGTKKPDTNT 921
WGS K+ EP+ WG K + T + A GW ++ P T
Sbjct: 1487 WGSGAKNKETEPAPAAWGSWGKKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSLET 1546
Query: 920 EKG-SSWGQKVAKADE-----AGWGSKKSDDTENGSGSVAGSWGQKVVSGIEAG--WGAK 765
+ G ++WG + E A WGS+ ++ E+ SGS A +WG+K G WG++
Sbjct: 1547 QSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWGKKKPETESGGAAWGSQ 1606
Query: 764 -KMENETEKGSGSGSWG--QKAISKNESG---WGTERTENE-----------AVWGSKKP 636
K ++E E GSG+ +WG K S+ ESG WG++ +N W KKP
Sbjct: 1607 AKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGACASTWGAWDKKKP 1666
Query: 635 ETEKGSGSGSWGQKVVSGKE-------GGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQ 477
ETE G +WG + + E WG K E +G G++WG + S+ Q
Sbjct: 1667 ETESGGDGAAWGSQAKNNSETESGSGAAAWGKKK----PETESGGGAAWGSQAKKNSESQ 1722
Query: 476 AEVAKDSGQWGSKESWKAQTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWA 300
A WGSK++ ++ GS SAAWGKK ++T A PT + +W SW
Sbjct: 1723 LGAA----NWGSKDTNNSENGSDSAAWGKK-KNTEAEPT-------------SVAWGSWG 1764
Query: 299 KKDDKKDQFASQVED-----SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXX 135
+ +Q +D S K G+KE G+ S WG P N
Sbjct: 1765 QPSPPASDKDAQEDDGNPWVSLKATNSGEKE-GNETSQWGVP---------NKRYPSAGS 1814
Query: 134 XXXXXXXXXGPKRDHPARPVGGPN-DGPRAVVPFTATKQRLDIFT 3
KR+ P R G + GP FTAT+QR+D+FT
Sbjct: 1815 QSQGGGGGADWKRNRPPRTPGSESIMGPM----FTATRQRVDMFT 1855
Score = 89.7 bits (221), Expect = 9e-16
Identities = 82/337 (24%), Positives = 124/337 (36%), Gaps = 50/337 (14%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGT-KKPDTNTEKGSSWGQKVAKADEAGWGSKK 855
+ +P++D EP K DD+A + K ++ + GS W + E WG K
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSE--WGVSK 1333
Query: 854 SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES---GW 684
+ E + S G +GW +KK E G+WG K E+ W
Sbjct: 1334 NAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNW 1393
Query: 683 GTERTENEAV---------------------WGSKKPETEKGSGSGSWGQKVVSGKEGGW 567
GT+ +N++V WG K ETE + W
Sbjct: 1394 GTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAW 1453
Query: 566 GADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWG--- 396
G+ N + +G WG + ++ E D+G WGS K + AAWG
Sbjct: 1454 GSTNKKNTGTESDAAG--WG----STNKKNPETESDAGAWGSGAKNKETEPAPAAWGSWG 1507
Query: 395 -KKAEDTPAVPTW-NQGQKTVEKGEQAGSWTS-------------WAKKDDKKDQFASQV 261
K +E W N+G++ E AG W S W +D S+
Sbjct: 1508 KKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSLETQSGGATWGSRD------KSKF 1561
Query: 260 EDSSKTNQWG-------KKEAGSSASSWGKPVQKTDA 171
E S WG + E+GS A++WGK +T++
Sbjct: 1562 ETESGGAAWGSQAKNNFESESGSGAAAWGKKKPETES 1598
>ref|XP_013734544.1| DNA-directed RNA polymerase V subunit 1-like isoform X2 [Brassica
napus]
Length = 2059
Score = 143 bits (361), Expect = 5e-34
Identities = 120/405 (29%), Positives = 173/405 (42%), Gaps = 60/405 (14%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEP----WGTKKDD-----------------TAAAASGWGTKKPDTNT 921
WGS K+ EP+ WG K + T + A GW ++ P T
Sbjct: 1487 WGSGAKNKETEPAPAAWGSWGKKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSLET 1546
Query: 920 EKG-SSWGQKVAKADE-----AGWGSKKSDDTENGSGSVAGSWGQKVVSGIEAG--WGAK 765
+ G ++WG + E A WGS+ ++ E+ SGS A +WG+K G WG++
Sbjct: 1547 QSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWGKKKPETESGGAAWGSQ 1606
Query: 764 -KMENETEKGSGSGSWG--QKAISKNESG---WGTERTENE-----------AVWGSKKP 636
K ++E E GSG+ +WG K S+ ESG WG++ +N W KKP
Sbjct: 1607 AKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGACASTWGAWDKKKP 1666
Query: 635 ETEKGSGSGSWGQKVVSGKE-------GGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQ 477
ETE G +WG + + E WG K E +G G++WG + S+ Q
Sbjct: 1667 ETESGGDGAAWGSQAKNNSETESGSGAAAWGKKK----PETESGGGAAWGSQAKKNSESQ 1722
Query: 476 AEVAKDSGQWGSKESWKAQTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWA 300
A WGSK++ ++ GS SAAWGKK +++ A PT + +W SW
Sbjct: 1723 LGAA----NWGSKDTNNSENGSDSAAWGKK-KNSEAEPT-------------SVAWGSWG 1764
Query: 299 KKDDKKDQFASQVED-----SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXX 135
+ +Q +D S K G+KE G+ S WG P N
Sbjct: 1765 QPSPPASDKDAQEDDGNPWVSLKATNSGEKE-GNETSQWGVP---------NKRYPSAGS 1814
Query: 134 XXXXXXXXXGPKRDHPARPVGGPN-DGPRAVVPFTATKQRLDIFT 3
KR+ P R G + GP FTAT+QR+D+FT
Sbjct: 1815 QSQGGGGGADWKRNRPPRTPGSESIMGPM----FTATRQRVDMFT 1855
Score = 89.7 bits (221), Expect = 9e-16
Identities = 82/337 (24%), Positives = 124/337 (36%), Gaps = 50/337 (14%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGT-KKPDTNTEKGSSWGQKVAKADEAGWGSKK 855
+ +P++D EP K DD+A + K ++ + GS W + E WG K
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSE--WGVSK 1333
Query: 854 SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES---GW 684
+ E + S G +GW +KK E G+WG K E+ W
Sbjct: 1334 NAGGEENTQSGWGKAANIEKEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNW 1393
Query: 683 GTERTENEAV---------------------WGSKKPETEKGSGSGSWGQKVVSGKEGGW 567
GT+ +N++V WG K ETE + W
Sbjct: 1394 GTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAW 1453
Query: 566 GADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWG--- 396
G+ N + +G WG + ++ E D+G WGS K + AAWG
Sbjct: 1454 GSTNKKNTGTESDAAG--WG----STNKKNPETESDAGAWGSGAKNKETEPAPAAWGSWG 1507
Query: 395 -KKAEDTPAVPTW-NQGQKTVEKGEQAGSWTS-------------WAKKDDKKDQFASQV 261
K +E W N+G++ E AG W S W +D S+
Sbjct: 1508 KKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSLETQSGGATWGSRD------KSKF 1561
Query: 260 EDSSKTNQWG-------KKEAGSSASSWGKPVQKTDA 171
E S WG + E+GS A++WGK +T++
Sbjct: 1562 ETESGGAAWGSQAKNNFESESGSGAAAWGKKKPETES 1598
>ref|XP_009133402.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Brassica rapa]
Length = 2059
Score = 143 bits (361), Expect = 5e-34
Identities = 120/405 (29%), Positives = 173/405 (42%), Gaps = 60/405 (14%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEP----WGTKKDD-----------------TAAAASGWGTKKPDTNT 921
WGS K+ EP+ WG K + T + A GW ++ P T
Sbjct: 1487 WGSGAKNKETEPAPAAWGSWGKKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSLET 1546
Query: 920 EKG-SSWGQKVAKADE-----AGWGSKKSDDTENGSGSVAGSWGQKVVSGIEAG--WGAK 765
+ G ++WG + E A WGS+ ++ E+ SGS A +WG+K G WG++
Sbjct: 1547 QSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWGKKKPETESGGAAWGSQ 1606
Query: 764 -KMENETEKGSGSGSWG--QKAISKNESG---WGTERTENE-----------AVWGSKKP 636
K ++E E GSG+ +WG K S+ ESG WG++ +N W KKP
Sbjct: 1607 AKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGAGASTWGAWDKKKP 1666
Query: 635 ETEKGSGSGSWGQKVVSGKE-------GGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQ 477
ETE G +WG + + E WG K E +G G++WG + S+ Q
Sbjct: 1667 ETESGGDGAAWGSQAKNNSETESGSGAAAWGKKK----PETESGGGAAWGSQAKKNSESQ 1722
Query: 476 AEVAKDSGQWGSKESWKAQTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWA 300
A WGSK++ ++ GS SAAWGKK +++ A PT + +W SW
Sbjct: 1723 LGAA----NWGSKDTNNSENGSDSAAWGKK-KNSEAEPT-------------SVAWGSWG 1764
Query: 299 KKDDKKDQFASQVED-----SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXX 135
+ +Q +D S K G+KE G+ S WG P N
Sbjct: 1765 QPSPPASDKDAQEDDGNPWVSLKATNSGEKE-GNETSQWGVP---------NKRYPSAGS 1814
Query: 134 XXXXXXXXXGPKRDHPARPVGGPN-DGPRAVVPFTATKQRLDIFT 3
KR+ P R G + GP FTAT+QR+D+FT
Sbjct: 1815 QSQGGGGGADWKRNRPPRTPGSESIMGPM----FTATRQRVDMFT 1855
Score = 89.7 bits (221), Expect = 9e-16
Identities = 82/337 (24%), Positives = 124/337 (36%), Gaps = 50/337 (14%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGT-KKPDTNTEKGSSWGQKVAKADEAGWGSKK 855
+ +P++D EP K DD+A + K ++ + GS W + E WG K
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSE--WGVSK 1333
Query: 854 SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES---GW 684
+ E + S G +GW +KK E G+WG K E+ W
Sbjct: 1334 NAGGEENTQSGWGKAANIEKEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNW 1393
Query: 683 GTERTENEAV---------------------WGSKKPETEKGSGSGSWGQKVVSGKEGGW 567
GT+ +N++V WG K ETE + W
Sbjct: 1394 GTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAW 1453
Query: 566 GADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWG--- 396
G+ N + +G WG + ++ E D+G WGS K + AAWG
Sbjct: 1454 GSTNKKNTGTESDAAG--WG----STNKKNPETESDAGAWGSGAKNKETEPAPAAWGSWG 1507
Query: 395 -KKAEDTPAVPTW-NQGQKTVEKGEQAGSWTS-------------WAKKDDKKDQFASQV 261
K +E W N+G++ E AG W S W +D S+
Sbjct: 1508 KKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSLETQSGGATWGSRD------KSKF 1561
Query: 260 EDSSKTNQWG-------KKEAGSSASSWGKPVQKTDA 171
E S WG + E+GS A++WGK +T++
Sbjct: 1562 ETESGGAAWGSQAKNNFESESGSGAAAWGKKKPETES 1598
>ref|XP_019066486.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Solanum
lycopersicum]
ref|XP_019066488.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Solanum
lycopersicum]
Length = 1984
Score = 136 bits (343), Expect = 1e-31
Identities = 119/333 (35%), Positives = 157/333 (47%), Gaps = 42/333 (12%)
Frame = -2
Query: 1034 GSNNPQKDV-EPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
GSN Q V E SE WG KK +T +S WG K T+ GSSWG+K + WG K
Sbjct: 1367 GSNTQQSGVTEQSESWG-KKGETDGGSS-WGKKG---ETDGGSSWGKKAETDGGSSWGKK 1421
Query: 857 KSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGT 678
+T+ GS SWG+K + + WG K ET+ GS SWG+KA + S WG
Sbjct: 1422 --GETDGGS-----SWGKKGETDGGSSWGEKP---ETDGGS---SWGKKAETDGGSSWGK 1468
Query: 677 E-RTENEAVWGSKKPETEKGSGSG--------SWGQKV-------VSGKE---GGWGA-D 558
+ T+ + WG KK + + GS G SWG+KV +SGKE G W +
Sbjct: 1469 KAETDGGSSWG-KKVDKDGGSSLGKKVDKDGASWGKKVESENFPQLSGKEEQSGSWSSWG 1527
Query: 557 KLVNDSEKGAGSGSSWGQKVVTPSQ---------------PQAEVAKDSGQWGSK----E 435
K V GSSWG+KV P + +V KD G WG K +
Sbjct: 1528 KQVEKD-----GGSSWGKKVDEPEKNLHQSGNGEQSGFVSSWGKVEKDGGSWGKKIESHQ 1582
Query: 434 SWKAQ-TGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKD-QFASQV 261
S K + +GS ++WGKK E T +W K V+K +SW KK DK + ++
Sbjct: 1583 SGKGEESGSLSSWGKKVE-TDGGSSWG---KKVDKDS-----SSWGKKVDKDGGSWGKKI 1633
Query: 260 EDSSKTNQWGKKEAGSSASSWGKPVQKTDAPSW 162
E + GK+E S SSWGK V+K SW
Sbjct: 1634 ETENTPQLSGKEEQSGSLSSWGKKVEKDGGSSW 1666
Score = 128 bits (321), Expect = 9e-29
Identities = 103/314 (32%), Positives = 144/314 (45%), Gaps = 25/314 (7%)
Frame = -2
Query: 1028 NNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNT------EKGSSWGQKVAKADEAGW 867
N ++ V S+ W S WG K +NT E+ SWG+K + W
Sbjct: 1346 NGAEEGVNQSDSW-----------SAWGKKVDGSNTQQSGVTEQSESWGKKGETDGGSSW 1394
Query: 866 GSKKSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESG 687
G K +T+ GS SWG+K + + WG K ET+ GS SWG+K + S
Sbjct: 1395 GKK--GETDGGS-----SWGKKAETDGGSSWGKK---GETDGGS---SWGKKGETDGGSS 1441
Query: 686 WGTE-RTENEAVWGSKKPETEKGS---------GSGSWGQKVVSGKEGGWGADKLVNDSE 537
WG + T+ + WG KK ET+ GS G SWG+KV K+GG K V+
Sbjct: 1442 WGEKPETDGGSSWG-KKAETDGGSSWGKKAETDGGSSWGKKV--DKDGGSSLGKKVDK-- 1496
Query: 536 KGAGSGSSWGQKVVTPSQPQAEVAKD-SGQWGSKESWKAQTGSSAAWGKKAEDTPAVPTW 360
G+SWG+KV + + PQ ++ SG W S + G S +WGKK ++ P
Sbjct: 1497 ----DGASWGKKVESENFPQLSGKEEQSGSWSSWGKQVEKDGGS-SWGKKVDE----PEK 1547
Query: 359 NQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQV--------EDSSKTNQWGKKEAGSSAS 204
N Q GEQ+G +SW K + + ++ E+S + WGKK S
Sbjct: 1548 NLHQS--GNGEQSGFVSSWGKVEKDGGSWGKKIESHQSGKGEESGSLSSWGKKVETDGGS 1605
Query: 203 SWGKPVQKTDAPSW 162
SWGK V K D+ SW
Sbjct: 1606 SWGKKVDK-DSSSW 1618
Score = 118 bits (295), Expect = 2e-25
Identities = 104/317 (32%), Positives = 142/317 (44%), Gaps = 38/317 (11%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAK--------- 885
WG P+ D S WG K + S WG K T+ GSSWG+KV K
Sbjct: 1442 WGEK-PETDGGSS--WGKKAETDGG--SSWGKK---AETDGGSSWGKKVDKDGGSSLGKK 1493
Query: 884 --ADEAGWGSKKSDDT-------ENGSGSVAGSWGQKVVSGIEAGWGAKKMENET---EK 741
D A WG K + E SGS + SWG++V + WG K E E +
Sbjct: 1494 VDKDGASWGKKVESENFPQLSGKEEQSGSWS-SWGKQVEKDGGSSWGKKVDEPEKNLHQS 1552
Query: 740 GSGS---------------GSWGQKAISKNESGWGTERTENEAVWGSKKPETEKGSGSGS 606
G+G GSWG+K I ++SG G E + + + WG KK ET+ GS S
Sbjct: 1553 GNGEQSGFVSSWGKVEKDGGSWGKK-IESHQSGKG-EESGSLSSWG-KKVETDGGS---S 1606
Query: 605 WGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESW- 429
WG+KV WG +K G SWG+K+ T + PQ ++ Q GS SW
Sbjct: 1607 WGKKV-DKDSSSWG--------KKVDKDGGSWGKKIETENTPQLSGKEE--QSGSLSSWG 1655
Query: 428 -KAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDS 252
K + ++WGKK ++ P N+ Q GEQ+GSW+SW KK +K + +
Sbjct: 1656 KKVEKDGGSSWGKKVDE----PENNRQQS--GSGEQSGSWSSWGKKVEKDGGSWDEPKQL 1709
Query: 251 SKTNQWGKKEAGSSASS 201
+ + WGK G S
Sbjct: 1710 NSESSWGKAPNGGGLGS 1726
Score = 111 bits (277), Expect = 5e-23
Identities = 106/405 (26%), Positives = 158/405 (39%), Gaps = 60/405 (14%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASG---------WGTKKPDTN----------TEK 915
WG + + + WG K D ++ G WG K N +
Sbjct: 1466 WGK---KAETDGGSSWGKKVDKDGGSSLGKKVDKDGASWGKKVESENFPQLSGKEEQSGS 1522
Query: 914 GSSWGQKVAKADEAGWGSKKSDDTEN----GSGSVAG---SWGQKVVSGIEAGWGAKKME 756
SSWG++V K + WG K + +N G+G +G SWG+ G WG K
Sbjct: 1523 WSSWGKQVEKDGGSSWGKKVDEPEKNLHQSGNGEQSGFVSSWGKVEKDG--GSWGKKIES 1580
Query: 755 NETEKGSGSGS---WGQKAISKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKV-- 591
+++ KG SGS WG+K + S WG + ++ + WG K + GSWG+K+
Sbjct: 1581 HQSGKGEESGSLSSWGKKVETDGGSSWGKKVDKDSSSWGKKVDKD-----GGSWGKKIET 1635
Query: 590 -----VSGKE------GGWGADKLVNDSEKGAGSGSSWGQKVVTP--SQPQAEVAKDSGQ 450
+SGKE WG K+ D GSSWG+KV P ++ Q+ + SG
Sbjct: 1636 ENTPQLSGKEEQSGSLSSWGK-KVEKDG------GSSWGKKVDEPENNRQQSGSGEQSGS 1688
Query: 449 WGS--------KESWKA--QTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWA 300
W S SW Q S ++WGK +G K ++ + W+S
Sbjct: 1689 WSSWGKKVEKDGGSWDEPKQLNSESSWGKAPNGGGLGSATAEGNKRLD--QSVNDWSSSV 1746
Query: 299 KKDDKKDQFASQVEDSSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXX 120
+D + ++ +DS+K W G S + P W
Sbjct: 1747 SRDGQLNEPTH--DDSTKNGGWNSSNVGGWNSQKVGVEESDKTPQWGQRRRNAKGDFKEN 1804
Query: 119 XXXXGP------KRDHPARPVGGPNDGPRAVVPFTATKQRLDIFT 3
G K + PAR N G FTAT+Q++D+FT
Sbjct: 1805 SRGWGSASGGEWKNNRPARSADDSNRGGH----FTATRQKIDLFT 1845
Score = 95.9 bits (237), Expect = 8e-18
Identities = 90/269 (33%), Positives = 119/269 (44%), Gaps = 12/269 (4%)
Frame = -2
Query: 932 DTNTEKGSSWGQKVAKADEAGWGSKKSDDTENGSGSVAGSWGQKVVSGIE-----AGWGA 768
D GS+W ++A GS KS GS +AG G+ + WG
Sbjct: 1315 DEGKPSGSAW-------EKASSGSVKS----GGSWDMAGKTQNGAEEGVNQSDSWSAWG- 1362
Query: 767 KKMENETEKGSG----SGSWGQKAISKNESGWGTE-RTENEAVWGSKKPETEKGSGSGSW 603
KK++ + SG S SWG+K + S WG + T+ + WG KK ET+ GS SW
Sbjct: 1363 KKVDGSNTQQSGVTEQSESWGKKGETDGGSSWGKKGETDGGSSWG-KKAETDGGS---SW 1418
Query: 602 GQKVVSGKEGGWGADKLVNDSEKG-AGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWK 426
G+K + WG +KG GSSWG+K T WG K
Sbjct: 1419 GKKGETDGGSSWG--------KKGETDGGSSWGEKPETDG---------GSSWGKK---- 1457
Query: 425 AQTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKD-QFASQVEDSS 249
A+T ++WGKKAE T +W K V+K GS S KK DK + +VE +
Sbjct: 1458 AETDGGSSWGKKAE-TDGGSSWG---KKVDK--DGGS--SLGKKVDKDGASWGKKVESEN 1509
Query: 248 KTNQWGKKEAGSSASSWGKPVQKTDAPSW 162
GK+E S SSWGK V+K SW
Sbjct: 1510 FPQLSGKEEQSGSWSSWGKQVEKDGGSSW 1538
>ref|XP_018476064.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2
[Raphanus sativus]
Length = 2041
Score = 136 bits (343), Expect = 1e-31
Identities = 118/378 (31%), Positives = 170/378 (44%), Gaps = 33/378 (8%)
Frame = -2
Query: 1037 WGSNNPQKDVEPS-EPWGTK---KDDTAAAASGWGTK-KPDTNTEKGS------SWGQKV 891
W S N + + WG++ K +T + S WG++ + + TE GS SW +K
Sbjct: 1528 WASRNKSLETQSGGATWGSRDKSKFETESGGSAWGSQGRNNRETESGSGGAAWGSWDKKK 1587
Query: 890 AKADEAG--WGS--KKSDDTENGSGSVA--GSWGQK---VVSGIEAGWGAKKMEN-ETEK 741
+ + G WGS K + +TE+GS A G+W +K SG A WG++ N ETE
Sbjct: 1588 PETESGGAAWGSQAKNNSETESGSSGAAAWGTWDKKKPETESGGGAAWGSQAKNNSETES 1647
Query: 740 GSGSGSWGQKAISKNESGWGTERTENE---AVWGSKKPETEKGSGSGSWGQKVVSGKEGG 570
GSG+ WG W ++ E E A WGS+ ETE GSG+ +WG+K
Sbjct: 1648 GSGAAVWGT---------WDKKKPETESGGAGWGSQASETEAGSGASAWGKK-------- 1690
Query: 569 WGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGS-SAAWGK 393
SE +G G++WG + S+ Q A WGSKE+ ++ G+ SAAWGK
Sbjct: 1691 --------KSETESGGGAAWGSRDKNNSESQVGAAN----WGSKETNNSENGTDSAAWGK 1738
Query: 392 KAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGS 213
K K VE +G+W SW + D +Q +D N W +A S
Sbjct: 1739 K--------------KNVEAEPASGAWGSWGQPTPTAD---AQEDDG---NPWVSLKATS 1778
Query: 212 SA-------SSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPARPVGGPND-G 57
SA S WG P ++ + + + KR+ P R G + G
Sbjct: 1779 SADKDGNETSQWGVPTKRYPSTTGSQGGGGADW-----------KRNRPPRTPGSESILG 1827
Query: 56 PRAVVPFTATKQRLDIFT 3
P FTAT+QR+D+FT
Sbjct: 1828 PM----FTATRQRVDMFT 1841
Score = 88.2 bits (217), Expect = 3e-15
Identities = 90/344 (26%), Positives = 132/344 (38%), Gaps = 54/344 (15%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSKKS 852
+ +P++D EP K DD+A + K + + G S WG K+
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEDKTSSLWDNGGS-----------EWGVSKN 1324
Query: 851 DDTENGSGSVAGSWGQKVVSGIE-----AGWGAKKMENETEKGSGSGSWGQKAISKNES- 690
E + S G K + +E +GW KK E K G+WG K E+
Sbjct: 1325 TGGEENTQS-----GWKKTANVEKEDASSGWNVKKDAQEATKSDSWGAWGSKTKDDAENA 1379
Query: 689 --GWGTERTENEAV---------------------WGSKKPETEKGSGS-GSWGQKVVSG 582
WGT +N++V WG K ETE + GSWG+K
Sbjct: 1380 TPNWGTTPAQNDSVVIENGEPASDVWGPKAVSDKPWGKKNSETEPAPAAWGSWGKKNPET 1439
Query: 581 KEG--GWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQT-GS 411
+ G WG+ N ++WG + P E D+ WGS +T +
Sbjct: 1440 ESGAAAWGSSDKNNPGTN--SDAAAWGS--TNKNNPGTE--SDASAWGSGTKMNKETEPA 1493
Query: 410 SAAWGKKAEDT-PAVPTWNQGQKTVEKGEQ-AGSWTSWAKKDDKKDQFA-------SQVE 258
SAAWGKK+ +T W K V + E AG W S K + + A S+ E
Sbjct: 1494 SAAWGKKSSETVSGGADWGNRSKRVSETESGAGGWASRNKSLETQSGGATWGSRDKSKFE 1553
Query: 257 DSSKTNQWGKK-------EAGSSASSWG-----KPVQKTDAPSW 162
S + WG + E+GS ++WG KP ++ +W
Sbjct: 1554 TESGGSAWGSQGRNNRETESGSGGAAWGSWDKKKPETESGGAAW 1597
>ref|XP_013628526.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
[Brassica oleracea var. oleracea]
Length = 2056
Score = 135 bits (341), Expect = 2e-31
Identities = 119/394 (30%), Positives = 171/394 (43%), Gaps = 49/394 (12%)
Frame = -2
Query: 1037 WGS--NNPQKDVEPSEPWGTKK---DDTAAAASGWGTKKPDT-NTEKGSSWGQKVAKADE 876
WGS + V WG + +T + A GW ++ N G++WG + E
Sbjct: 1504 WGSWGKKSSETVSGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFE 1563
Query: 875 -----AGWGS--KKSDDTENGSGSVA-GSWGQKV----VSGIEAGWGAKKMEN-ETEKGS 735
A WGS K + +TE GSG+ A G+W +K G A WG++ N ETE GS
Sbjct: 1564 TESGGAAWGSQAKNNSETEPGSGAAAWGTWDKKKPETETGGGGAAWGSQAKNNSETESGS 1623
Query: 734 GSGSWGQKAISKNES-----GWGTERTENE-----------AVWGSKKPETEKGSGSGSW 603
+ +WG K+E+ WG++ +N W KKPETE G G +W
Sbjct: 1624 SAAAWGTWDKKKSETELVDGAWGSQAKKNSETESGAGASTWGAWDKKKPETETGGGGAAW 1683
Query: 602 GQKVVSGKE-----GG--WGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWG 444
G + + E GG WG K SE +G G++WG + S+ Q A WG
Sbjct: 1684 GSQAKNNSETESGSGGAAWGKKK----SETDSGGGAAWGSQAKKNSESQLGAAN----WG 1735
Query: 443 SKESWKAQTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFAS 267
SK + ++ GS SAAWGKK +++ A PT + +W SW + +
Sbjct: 1736 SKNTNNSENGSDSAAWGKK-KNSEAEPT-------------SVAWGSWGQPSPPASDKDA 1781
Query: 266 QVED-----SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGP 102
Q +D S K G+KE G+ S WG P ++ +
Sbjct: 1782 QEDDGNPWVSLKATNSGEKE-GNETSQWGVPNKRYPSAGSQSQGGGGGADW--------- 1831
Query: 101 KRDHPARPVGGPND-GPRAVVPFTATKQRLDIFT 3
KR+ P R G + GP FTAT+QR+D+FT
Sbjct: 1832 KRNRPPRTPGSESILGPM----FTATRQRVDMFT 1861
Score = 80.9 bits (198), Expect = 8e-13
Identities = 81/332 (24%), Positives = 127/332 (38%), Gaps = 53/332 (15%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGT-KKPDTNTEKGSSWGQKVAKADEAGWGSKK 855
+ +P++D EP K DD+A + K ++ + GS W + E WG K
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSE--WGVSK 1333
Query: 854 SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES---GW 684
+ E + S G +GW +KK E G+WG K E+ W
Sbjct: 1334 NAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNW 1393
Query: 683 GTERTENEAV---------------------WGSKKPETEKGSGSGSWGQKVVSGKE--G 573
GT+ +N++V WG K ETE +WG+K +
Sbjct: 1394 GTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETE--PAPAAWGKKNSESESAAA 1451
Query: 572 GWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAA--- 402
WG+ N + +G WG P+ E+ ++ WGS +T + A
Sbjct: 1452 AWGSSDKKNTGTESDAAG--WGS--AYKKNPETEL--NAAAWGSGAKMNKETEPAPAAWG 1505
Query: 401 -WGKKAEDT-PAVPTWN-QGQKTVEKGEQAGSWTS-------------WAKKDDKKDQ-- 276
WGKK+ +T W +G++ E AG W S W +D K +
Sbjct: 1506 SWGKKSSETVSGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETE 1565
Query: 275 -----FASQVEDSSKTNQWGKKEAGSSASSWG 195
+ SQ +++S+T E GS A++WG
Sbjct: 1566 SGGAAWGSQAKNNSET------EPGSGAAAWG 1591
>ref|XP_013717052.1| DNA-directed RNA polymerase V subunit 1-like [Brassica napus]
Length = 2032
Score = 134 bits (337), Expect = 7e-31
Identities = 120/388 (30%), Positives = 168/388 (43%), Gaps = 43/388 (11%)
Frame = -2
Query: 1037 WGS--NNPQKDVEPSEPWGTKK---DDTAAAASGWGTKKPDT-NTEKGSSWGQKVAKADE 876
WGS + V WG + +T + A GW ++ N G++WG + E
Sbjct: 1504 WGSWGKKSSETVSGGADWGNRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFE 1563
Query: 875 -----AGWGS--KKSDDTENGSGSVA-GSWGQKV----VSGIEAGWGAKKMEN-ETEKGS 735
A WGS K + +TE GSG+ A G+W +K G A WG++ N ETE GS
Sbjct: 1564 TESGGAAWGSQAKNNSETEPGSGAAALGTWDKKKPETETGGGGAAWGSQAKNNSETESGS 1623
Query: 734 GSGSWG--QKAISKNESG---WGTERTENE-----------AVWGSKKPETEKGSGSGSW 603
G+ +WG K S+ ESG WG++ +N W KKPETE G G +W
Sbjct: 1624 GAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGAGASTWGAWDKKKPETESGGGGAAW 1683
Query: 602 GQKVVSGKEGGWGADKLVNDSEKGAGSG-SSWGQKVVTPSQPQAEVAKDSGQWGSKESWK 426
G + N+SE +GSG ++WG + S+ Q A WGSK++
Sbjct: 1684 GSQA-------------KNNSETESGSGAAAWGSQAKKNSESQLGAA----NWGSKDTNN 1726
Query: 425 AQTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVED-- 255
++ GS SAAWGKK +++ A PT + +W SW + +Q +D
Sbjct: 1727 SENGSDSAAWGKK-KNSEAEPT-------------SVAWCSWGQPSPPASDKDAQEDDGN 1772
Query: 254 ---SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPA 84
S K G KE G+ S WG P N KR+ P
Sbjct: 1773 PWVSLKATSSGDKE-GNETSQWGVP---------NKRYPSAGSQSQGGGGGADWKRNRPP 1822
Query: 83 RPVGGPND-GPRAVVPFTATKQRLDIFT 3
R G + GP FTAT+QR+D+FT
Sbjct: 1823 RTPGSESILGPM----FTATRQRVDMFT 1846
Score = 80.5 bits (197), Expect = 1e-12
Identities = 80/343 (23%), Positives = 125/343 (36%), Gaps = 64/343 (18%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGT-KKPDTNTEKGSSWGQKVAKADEAGWGSKK 855
+ +P++D EP K DD+A + K ++ + GS W + E WG K
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSE--WGVSK 1333
Query: 854 SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES---GW 684
+ E + S G +GW +KK E G+WG K E+ W
Sbjct: 1334 NAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNW 1393
Query: 683 GTERTENEAV---------------------WGSKKPETEKGSGSGSWGQKVVSGKEGGW 567
GT+ +N++V WG K ETE + W
Sbjct: 1394 GTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAW 1453
Query: 566 GADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAA----W 399
G+D N + +G WG P+ E+ ++ WGS +T + A W
Sbjct: 1454 GSDDEKNTGTESDAAG--WGS--TYKKNPETEL--NAAAWGSGAKMNKETEPAPAAWGSW 1507
Query: 398 GKKAEDTPA--VPTWNQGQKTVEKGEQAGSWTS-------------WAKKDDKKDQ---- 276
GKK+ +T + N+G++ E AG W S W +D K +
Sbjct: 1508 GKKSSETVSGGADWGNRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETESG 1567
Query: 275 ---FASQVEDSSKT---------NQWGKK----EAGSSASSWG 195
+ SQ +++S+T W KK E G ++WG
Sbjct: 1568 GAAWGSQAKNNSETEPGSGAAALGTWDKKKPETETGGGGAAWG 1610
>ref|XP_018476063.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
[Raphanus sativus]
Length = 2041
Score = 132 bits (332), Expect = 3e-30
Identities = 128/421 (30%), Positives = 185/421 (43%), Gaps = 76/421 (18%)
Frame = -2
Query: 1037 WGS---NNPQKDVEPSEPWGT---KKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADE 876
WGS NNP + + S WG+ +T A++ WG K +T G+ WG + + E
Sbjct: 1463 WGSTNKNNPGTESDASA-WGSGTKMNKETEPASAAWGKKSSET-VSGGADWGNRSKRVSE 1520
Query: 875 A-----GWGSK-KSDDTENGSGSVAGSWGQKVVSGIE-----AGWGAKKMEN-ETEKGSG 732
GW S+ KS +T++G + WG + S E + WG++ N ETE GSG
Sbjct: 1521 TESGAGGWASRNKSLETQSGGAT----WGSRDKSKFETESGGSAWGSQGRNNRETESGSG 1576
Query: 731 SGSWGQ--KAISKNESG---WGTERTENE---------AVWGS---KKP----------- 636
+WG K + ESG WG++ N A WG+ KKP
Sbjct: 1577 GAAWGSWDKKKPETESGGAAWGSQAKNNSETESGSSGAAAWGTWDKKKPETESGGGAAWG 1636
Query: 635 -------ETEKGSGSGSWGQKVVSGKEGG--WGADKLVNDSEKGAGSG-SSWGQKVV--- 495
ETE GSG+ +WG+K + GG WG+ + N+SE AGSG S+WG+K
Sbjct: 1637 SQAKNNSETESGSGAAAWGKKKSETESGGAAWGS-QAKNNSETEAGSGASAWGKKKSETE 1695
Query: 494 --------TPSQPQAEVAKDSGQWGSKESWKAQTGS-SAAWGKKAEDTPAVPTWNQGQKT 342
+ + +E + WGSKE+ ++ G+ SAAWGKK K
Sbjct: 1696 SGGGAAWGSRDKNNSESQVGAANWGSKETNNSENGTDSAAWGKK--------------KN 1741
Query: 341 VEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGSSA-------SSWGKPVQ 183
VE +G+W SW + D +Q +D N W +A SSA S WG P +
Sbjct: 1742 VEAEPASGAWGSWGQPTPTAD---AQEDDG---NPWVSLKATSSADKDGNETSQWGVPTK 1795
Query: 182 KTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPARPVGGPND-GPRAVVPFTATKQRLDIF 6
+ + + + KR+ P R G + GP FTAT+QR+D+F
Sbjct: 1796 RYPSTTGSQGGGGADW-----------KRNRPPRTPGSESILGPM----FTATRQRVDMF 1840
Query: 5 T 3
T
Sbjct: 1841 T 1841
Score = 88.2 bits (217), Expect = 3e-15
Identities = 90/344 (26%), Positives = 132/344 (38%), Gaps = 54/344 (15%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSKKS 852
+ +P++D EP K DD+A + K + + G S WG K+
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEDKTSSLWDNGGS-----------EWGVSKN 1324
Query: 851 DDTENGSGSVAGSWGQKVVSGIE-----AGWGAKKMENETEKGSGSGSWGQKAISKNES- 690
E + S G K + +E +GW KK E K G+WG K E+
Sbjct: 1325 TGGEENTQS-----GWKKTANVEKEDASSGWNVKKDAQEATKSDSWGAWGSKTKDDAENA 1379
Query: 689 --GWGTERTENEAV---------------------WGSKKPETEKGSGS-GSWGQKVVSG 582
WGT +N++V WG K ETE + GSWG+K
Sbjct: 1380 TPNWGTTPAQNDSVVIENGEPASDVWGPKAVSDKPWGKKNSETEPAPAAWGSWGKKNPET 1439
Query: 581 KEG--GWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQT-GS 411
+ G WG+ N ++WG + P E D+ WGS +T +
Sbjct: 1440 ESGAAAWGSSDKNNPGTN--SDAAAWGS--TNKNNPGTE--SDASAWGSGTKMNKETEPA 1493
Query: 410 SAAWGKKAEDT-PAVPTWNQGQKTVEKGEQ-AGSWTSWAKKDDKKDQFA-------SQVE 258
SAAWGKK+ +T W K V + E AG W S K + + A S+ E
Sbjct: 1494 SAAWGKKSSETVSGGADWGNRSKRVSETESGAGGWASRNKSLETQSGGATWGSRDKSKFE 1553
Query: 257 DSSKTNQWGKK-------EAGSSASSWG-----KPVQKTDAPSW 162
S + WG + E+GS ++WG KP ++ +W
Sbjct: 1554 TESGGSAWGSQGRNNRETESGSGGAAWGSWDKKKPETESGGAAW 1597
>ref|XP_015056787.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Solanum
pennellii]
ref|XP_015056795.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Solanum
pennellii]
Length = 2044
Score = 132 bits (332), Expect = 3e-30
Identities = 119/374 (31%), Positives = 159/374 (42%), Gaps = 83/374 (22%)
Frame = -2
Query: 1034 GSNNPQKDV-EPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
GSN Q V E SE WG KK +T +S WG K T+ GSSWG+K + WG K
Sbjct: 1367 GSNPQQSGVTEQSESWG-KKGETDGGSS-WGKKG---ETDVGSSWGKKAEMDGGSSWGKK 1421
Query: 857 KSDDT-----ENGSGSVAGSWGQKVVSGIEAGWGAK-KMENETEKGS-----GSGSWGQK 711
D + G SWG+K + + WG K +M+ + G G SWG+K
Sbjct: 1422 AETDGGSSWGKKGETDGGSSWGKKGETDGGSSWGKKAEMDGGSSWGKKAETDGGSSWGKK 1481
Query: 710 AISKNESGWGTE-RTENEAVWGSK-----------KPETEKGS---------GSGSWGQK 594
A + S WG + T+ + WG K KPET+ GS G SWG+K
Sbjct: 1482 AETDAGSSWGKKGETDGGSSWGKKGETDGGSSWGEKPETDGGSSWGKKAETDGGSSWGKK 1541
Query: 593 VVSGKEGGWG--ADK---------------LVNDSEKGAGS------------GSSWGQK 501
V WG DK ++ E+ +GS GSSWG+K
Sbjct: 1542 VDKDGGSSWGKKVDKDGASWGKKVESENFPQLSGKEEQSGSWSSWGKQVEKDGGSSWGKK 1601
Query: 500 VVTPSQ---------------PQAEVAKDSGQWGSK----ESWKAQ-TGSSAAWGKKAED 381
V P + +V KD G WG K +S K + +GS ++WGKK E
Sbjct: 1602 VDEPEKNLHQSGNGEQSGFVSSWGKVEKDGGSWGKKIESHQSGKGEESGSLSSWGKKVE- 1660
Query: 380 TPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKD-QFASQVEDSSKTNQWGKKEAGSSAS 204
T +W K V+K +SW KK DK + ++E + GK+E S S
Sbjct: 1661 TDGGSSWG---KKVDKDS-----SSWGKKVDKDGGSWGKKIETENTPQLSGKEEQSGSLS 1712
Query: 203 SWGKPVQKTDAPSW 162
SWGK V+K SW
Sbjct: 1713 SWGKKVEKDGGSSW 1726
Score = 121 bits (304), Expect = 2e-26
Identities = 105/306 (34%), Positives = 140/306 (45%), Gaps = 27/306 (8%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG P+ D S WG K + S WG K + + GSSWG+KV K D A WG K
Sbjct: 1514 WGEK-PETDGGSS--WGKKAETDGG--SSWGKK---VDKDGGSSWGKKVDK-DGASWGKK 1564
Query: 857 KSDDT-------ENGSGSVAGSWGQKVVSGIEAGWGAKKMENET---EKGSGS------- 729
+ E SGS + SWG++V + WG K E E + G+G
Sbjct: 1565 VESENFPQLSGKEEQSGSWS-SWGKQVEKDGGSSWGKKVDEPEKNLHQSGNGEQSGFVSS 1623
Query: 728 --------GSWGQKAISKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEG 573
GSWG+K I ++SG G E + + + WG KK ET+ GS SWG+KV
Sbjct: 1624 WGKVEKDGGSWGKK-IESHQSGKG-EESGSLSSWG-KKVETDGGS---SWGKKV-DKDSS 1676
Query: 572 GWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESW--KAQTGSSAAW 399
WG +K G SWG+K+ T + PQ ++ Q GS SW K + ++W
Sbjct: 1677 SWG--------KKVDKDGGSWGKKIETENTPQLSGKEE--QSGSLSSWGKKVEKDGGSSW 1726
Query: 398 GKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEA 219
GKK D P T G GEQ+GSW+SW KK +K + S+ + WGK
Sbjct: 1727 GKKV-DEPENNTQQSGS-----GEQSGSWSSWGKKVEKDGGSWDGPKQSNSESSWGKAPN 1780
Query: 218 GSSASS 201
G S
Sbjct: 1781 GGGLGS 1786
Score = 113 bits (283), Expect = 9e-24
Identities = 107/396 (27%), Positives = 156/396 (39%), Gaps = 51/396 (12%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTN----------TEKGSSWGQKVA 888
WG + D + WG K D A+ WG K N + SSWG++V
Sbjct: 1538 WGK---KVDKDGGSSWGKKVDKDGAS---WGKKVESENFPQLSGKEEQSGSWSSWGKQVE 1591
Query: 887 KADEAGWGSKKSDDTEN----GSGSVAG---SWGQKVVSGIEAGWGAKKMENETEKGSGS 729
K + WG K + +N G+G +G SWG+ G WG K +++ KG S
Sbjct: 1592 KDGGSSWGKKVDEPEKNLHQSGNGEQSGFVSSWGKVEKDG--GSWGKKIESHQSGKGEES 1649
Query: 728 GS---WGQKAISKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKV-------VSGK 579
GS WG+K + S WG + ++ + WG K + GSWG+K+ +SGK
Sbjct: 1650 GSLSSWGKKVETDGGSSWGKKVDKDSSSWGKKVDKD-----GGSWGKKIETENTPQLSGK 1704
Query: 578 E------GGWGADKLVNDSEKGAGSGSSWGQKVVTPSQ--PQAEVAKDSGQWGS------ 441
E WG K+ D GSSWG+KV P Q+ + SG W S
Sbjct: 1705 EEQSGSLSSWGK-KVEKDG------GSSWGKKVDEPENNTQQSGSGEQSGSWSSWGKKVE 1757
Query: 440 --KESWKA--QTGSSAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQF 273
SW Q+ S ++WGK +G K ++ + W+S +D + ++
Sbjct: 1758 KDGGSWDGPKQSNSESSWGKAPNGGGLGSATAEGNKRLD--QSVNDWSSSVSRDGQLNEP 1815
Query: 272 ASQVEDSSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGP--- 102
+DS+K W G S + P W G
Sbjct: 1816 TH--DDSTKNGGWNSSTVGGWNSQKVGVEESDKTPQWGQRRRNAKGDFKENSRGWGSASG 1873
Query: 101 ---KRDHPARPVGGPNDGPRAVVPFTATKQRLDIFT 3
K + PAR N G FTAT+Q++D+FT
Sbjct: 1874 GEWKNNRPARSADDSNRGGH----FTATRQKIDLFT 1905
Score = 104 bits (259), Expect = 1e-20
Identities = 91/305 (29%), Positives = 129/305 (42%), Gaps = 14/305 (4%)
Frame = -2
Query: 1034 GSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSW---GQKVAKADE---- 876
GS P + + D+ + S W K + + G SW G+ A+E
Sbjct: 1296 GSEMPTFEDRAEFDYNENLDEGKPSGSAW-EKASSGSVKSGGSWDMAGKTQNGAEEGVNQ 1354
Query: 875 ----AGWGSKK--SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQ 714
+ WG K S+ ++G + SWG+K + + WG K ET+ GS SWG+
Sbjct: 1355 SDSWSAWGKKVDGSNPQQSGVTEQSESWGKKGETDGGSSWGKK---GETDVGS---SWGK 1408
Query: 713 KAISKNESGWGTE-RTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSE 537
KA S WG + T+ + WG KK ET+ GS SWG+K + WG ++
Sbjct: 1409 KAEMDGGSSWGKKAETDGGSSWG-KKGETDGGS---SWGKKGETDGGSSWGKKAEMD--- 1461
Query: 536 KGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWGKKAEDTPAVPTWN 357
GSSWG+K T WG K A+T + ++WGKK E T +W
Sbjct: 1462 ----GGSSWGKKAETDG---------GSSWGKK----AETDAGSSWGKKGE-TDGGSSWG 1503
Query: 356 QGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGSSASSWGKPVQKT 177
+ KGE G +SW +K + + + WGKK SSWGK V K
Sbjct: 1504 K------KGETDGG-SSWGEKPE-----------TDGGSSWGKKAETDGGSSWGKKVDKD 1545
Query: 176 DAPSW 162
SW
Sbjct: 1546 GGSSW 1550
>gb|KVH94774.1| Nucleic acid-binding, OB-fold, partial [Cynara cardunculus var.
scolymus]
Length = 2111
Score = 131 bits (330), Expect = 6e-30
Identities = 95/302 (31%), Positives = 117/302 (38%), Gaps = 26/302 (8%)
Frame = -2
Query: 992 WGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSKKSDDTENGSGSVAGS 813
WG K D A+SG G+ + G SWGQK + WG K SD G S GS
Sbjct: 1809 WGQKNSDGGGASSGGGSWGQKNSGGGGGSWGQKNSGGGGGSWGQKNSD---GGGESGGGS 1865
Query: 812 WGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGTERTENEAVWGSKKPE 633
WGQK G WG K + G G GSWGQ KN G G + WG K +
Sbjct: 1866 WGQKNNGGGGGSWGQKNSDGGGASGGGGGSWGQ----KNSDGGGASGGGGGS-WGQKNSD 1920
Query: 632 TEKGSGSGSWGQK------VVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQP--Q 477
SG GSWGQK G G WG G G SWGQK +
Sbjct: 1921 GGGASGGGSWGQKNSNGGGASGGGGGSWGQKNSDGGGASSGGGGGSWGQKNXQKNSDGGG 1980
Query: 476 AEVAKDSGQWGSKES--WKAQTGSSAAWGKKAEDTPAVP-----TWNQ----------GQ 348
A G WG K S A +G +WG+K D +W Q GQ
Sbjct: 1981 ASSGGGGGSWGQKNSDGGGASSGGGGSWGQKNSDGGGASSGGGGSWGQKNSGGGGGNWGQ 2040
Query: 347 KTVE-KGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGSSASSWGKPVQKTDA 171
K + G G SW +K+ + + WG+K +G S+S G + D+
Sbjct: 2041 KNSDGGGASGGGGGSWGQKNSEGGGVS-----GGGGGSWGQKSSGGSSSGAGDANKDADS 2095
Query: 170 PS 165
S
Sbjct: 2096 SS 2097
Score = 114 bits (285), Expect = 5e-24
Identities = 90/297 (30%), Positives = 108/297 (36%), Gaps = 31/297 (10%)
Frame = -2
Query: 992 WGTKKDDTAAAASG---------WGTKKPDTNTEKGSSWGQK-----VAKADEAGWGSKK 855
WG K +D A+ G WG K + G SWGQK A + WG K
Sbjct: 1727 WGQKSNDGGGASGGGGASGGGGSWGQKN---SAGGGGSWGQKNSDGGGASSGGGSWGQKN 1783
Query: 854 SD-----------DTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKA 708
SD G+ S GSWGQK G A G + G G GSWGQ
Sbjct: 1784 SDGGGXXXXXXXXXXGGGASSGGGSWGQKNSDGGGASSGGGSW-GQKNSGGGGGSWGQ-- 1840
Query: 707 ISKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGA 528
KN G G WG K + SG GSWGQK G G WG K +
Sbjct: 1841 --KNSGGGG-------GSWGQKNSDGGGESGGGSWGQKNNGGGGGSWG-QKNSDGGGASG 1890
Query: 527 GSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWGKKAEDTPAVP-----T 363
G G SWGQK S G WG K S +WG+K + +
Sbjct: 1891 GGGGSWGQK---NSDGGGASGGGGGSWGQKNSDGGGASGGGSWGQKNSNGGGASGGGGGS 1947
Query: 362 WNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEA-GSSASSWG 195
W Q G SW +K+ +K+ WG+K + G ASS G
Sbjct: 1948 WGQKNSDGGGASSGGGGGSWGQKNXQKNSDGGGASSGGGGGSWGQKNSDGGGASSGG 2004
Score = 103 bits (258), Expect = 2e-20
Identities = 98/318 (30%), Positives = 118/318 (37%), Gaps = 27/318 (8%)
Frame = -2
Query: 1034 GSNNPQKDVEPSEPWGTKKDDTAAAASGWG---TKKPDTNTEKGSS--WGQK----VAKA 882
GS + KD + S G+KK A GW + D G WGQK A
Sbjct: 1570 GSGDANKDADSSGWGGSKKSSQAGGGGGWSGGASGGGDGGASGGGDGGWGQKNTTGSGDA 1629
Query: 881 DEA-GWG-SKKSDDTE------NGSGSVAGSWGQKVVSGIEAGWGA-----KKMENETEK 741
+ A GWG SKKS + E G S GSWGQK G +A G +K
Sbjct: 1630 NHAIGWGGSKKSTEAEAIGGWSGGGASGGGSWGQKNSDGGDASGGGGGSWGQKNSGGGAS 1689
Query: 740 GSGSGSWGQKAISKNESGWGTERTENEAVWGSKKPET--EKGSGSGSWGQKVVSG--KEG 573
G G GSWGQK + + G G+ WG K + G G GSWGQK G G
Sbjct: 1690 GGGGGSWGQK--NSGDGGGGS--------WGQKNSDGGGASGGGGGSWGQKSNDGGGASG 1739
Query: 572 GWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSA-AWG 396
G GA +G G SWGQK A G WG K S S +WG
Sbjct: 1740 GGGA----------SGGGGSWGQK---------NSAGGGGSWGQKNSDGGGASSGGGSWG 1780
Query: 395 KKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAG 216
+K D G SW +K+ SS WG+K +G
Sbjct: 1781 QKNSDGGGXXXXXXXXXXGGGASSGGG--SWGQKNSDGGGA------SSGGGSWGQKNSG 1832
Query: 215 SSASSWGKPVQKTDAPSW 162
SWG+ SW
Sbjct: 1833 GGGGSWGQKNSGGGGGSW 1850
Score = 101 bits (252), Expect = 9e-20
Identities = 85/287 (29%), Positives = 104/287 (36%), Gaps = 20/287 (6%)
Frame = -2
Query: 992 WGTKKDDTAAAAS---GWGTKKPDTNTEKGSSWGQKVAKADEAGWGSKKSDDTENGSGSV 822
WG K + A+ GWG K T E W A WG K SD + SG
Sbjct: 1618 WGQKNTTGSGDANHAIGWGGSKKSTEAEAIGGWSGGGASGG-GSWGQKNSDGGD-ASGGG 1675
Query: 821 AGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGTERTENEAVWGSK 642
GSWGQK G +G G + G GSWGQ KN G G + WG K
Sbjct: 1676 GGSWGQKNSGGGASGGGGGSWGQKNSGDGGGGSWGQ----KNSDGGGASGGGGGS-WGQK 1730
Query: 641 KPETEKGS-------GSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQK------ 501
+ S G GSWGQK +G G WG +D + G SWGQK
Sbjct: 1731 SNDGGGASGGGGASGGGGSWGQKNSAGGGGSWGQKN--SDGGGASSGGGSWGQKNSDGGG 1788
Query: 500 ---VVTPSQPQAEVAKDSGQWGSKES-WKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVEK 333
+ G WG K S + +WG+K +W GQK
Sbjct: 1789 XXXXXXXXXXGGGASSGGGSWGQKNSDGGGASSGGGSWGQK-NSGGGGGSW--GQK---- 1841
Query: 332 GEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGSSASSWGK 192
G SW +K+ S S WG+K G SWG+
Sbjct: 1842 -NSGGGGGSWGQKN-------SDGGGESGGGSWGQKNNGGGGGSWGQ 1880
Score = 96.7 bits (239), Expect = 4e-18
Identities = 76/227 (33%), Positives = 85/227 (37%), Gaps = 29/227 (12%)
Frame = -2
Query: 992 WGTKKDDTAAAASG----WGTKKPDTN-TEKGSSWGQKVAKADEAG------WGSKKSDD 846
WG K D A+ G WG K D G SWGQK + A WG K SD
Sbjct: 1896 WGQKNSDGGGASGGGGGSWGQKNSDGGGASGGGSWGQKNSNGGGASGGGGGSWGQKNSDG 1955
Query: 845 TENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQK------AISKNESGW 684
SG GSWGQK G GA G G GSWGQK A S W
Sbjct: 1956 GGASSGGGGGSWGQKNXQKNSDGGGASS-------GGGGGSWGQKNSDGGGASSGGGGSW 2008
Query: 683 GTERTENEAV-------WGSKKPETEKGSGSGSWGQKVVSG--KEGGWGADKLVNDSEKG 531
G + ++ WG K G G G+WGQK G GG G +SE G
Sbjct: 2009 GQKNSDGGGASSGGGGSWGQKN----SGGGGGNWGQKNSDGGGASGGGGGSWGQKNSEGG 2064
Query: 530 A---GSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAW 399
G G SWGQK S A A S + G+S W
Sbjct: 2065 GVSGGGGGSWGQKSSGGSSSGAGDANKDADSSSGWGGSKKAGASGGW 2111
Score = 94.4 bits (233), Expect = 3e-17
Identities = 86/311 (27%), Positives = 109/311 (35%), Gaps = 32/311 (10%)
Frame = -2
Query: 1028 NNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSKKSD 849
N Q + WG+K DD A+A GW + G SWG G S S
Sbjct: 1491 NEKQDSGYGGQKWGSK-DDNDASAGGW--------SGGGGSWG---------GGASGGSG 1532
Query: 848 DTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGTERT 669
D G G+ GS G G G G GSWG+K + SG +
Sbjct: 1533 DGSWGGGASGGSGGGSWSGGASGG--------------GGGSWGEKNNGASGSGDANKDA 1578
Query: 668 ENEAVWGSKKPET------------------EKGSGSGSWGQKVVSGKEG-----GWGAD 558
++ GSKK G G G WGQK +G GWG
Sbjct: 1579 DSSGWGGSKKSSQAGGGGGWSGGASGGGDGGASGGGDGGWGQKNTTGSGDANHAIGWGGS 1638
Query: 557 KLVNDSEK-------GAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKES-WKAQTGSSAA 402
K ++E GA G SWGQK S G WG K S A G +
Sbjct: 1639 KKSTEAEAIGGWSGGGASGGGSWGQK---NSDGGDASGGGGGSWGQKNSGGGASGGGGGS 1695
Query: 401 WGKKAEDTPAVPTWNQGQKTVE-KGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKK 225
WG+K +W GQK + G G SW +K + + S WG+K
Sbjct: 1696 WGQKNSGDGGGGSW--GQKNSDGGGASGGGGGSWGQKSNDGGGASGGGGASGGGGSWGQK 1753
Query: 224 EAGSSASSWGK 192
+ SWG+
Sbjct: 1754 NSAGGGGSWGQ 1764
>ref|XP_013628527.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2
[Brassica oleracea var. oleracea]
Length = 2041
Score = 129 bits (324), Expect = 4e-29
Identities = 115/387 (29%), Positives = 165/387 (42%), Gaps = 42/387 (10%)
Frame = -2
Query: 1037 WGS--NNPQKDVEPSEPWGTKK---DDTAAAASGWGTKKPDT-NTEKGSSWGQKVAKADE 876
WGS + V WG + +T + A GW ++ N G++WG + E
Sbjct: 1504 WGSWGKKSSETVSGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFE 1563
Query: 875 -----AGWGS--KKSDDTENGSGSVA-GSWGQKV----VSGIEAGWGAKKMEN-ETEKGS 735
A WGS K + +TE GSG+ A G+W +K G A WG++ N ETE GS
Sbjct: 1564 TESGGAAWGSQAKNNSETEPGSGAAAWGTWDKKKPETETGGGGAAWGSQAKNNSETESGS 1623
Query: 734 GSGSWGQKAISKNES-----GWGTERTENE-----------AVWGSKKPETEKGSGSGSW 603
+ +WG K+E+ WG++ +N W KKPETE G G +W
Sbjct: 1624 SAAAWGTWDKKKSETELVDGAWGSQAKKNSETESGAGASTWGAWDKKKPETETGGGGAAW 1683
Query: 602 GQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKA 423
G + + E +E G+G G++WG + S+ Q A WGSK + +
Sbjct: 1684 GSQAKNNSE-----------TESGSG-GAAWGSQAKKNSESQLGAA----NWGSKNTNNS 1727
Query: 422 QTGS-SAAWGKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVED--- 255
+ GS SAAWGKK +++ A PT + +W SW + +Q +D
Sbjct: 1728 ENGSDSAAWGKK-KNSEAEPT-------------SVAWGSWGQPSPPASDKDAQEDDGNP 1773
Query: 254 --SSKTNQWGKKEAGSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPAR 81
S K G+KE G+ S WG P N KR+ P R
Sbjct: 1774 WVSLKATNSGEKE-GNETSQWGVP---------NKRYPSAGSQSQGGGGGADWKRNRPPR 1823
Query: 80 PVGGPND-GPRAVVPFTATKQRLDIFT 3
G + GP FTAT+QR+D+FT
Sbjct: 1824 TPGSESILGPM----FTATRQRVDMFT 1846
Score = 80.9 bits (198), Expect = 8e-13
Identities = 81/332 (24%), Positives = 127/332 (38%), Gaps = 53/332 (15%)
Frame = -2
Query: 1031 SNNPQKDVEPSEPWGTKKDDTAAAASGWGT-KKPDTNTEKGSSWGQKVAKADEAGWGSKK 855
+ +P++D EP K DD+A + K ++ + GS W + E WG K
Sbjct: 1279 AESPERDSALGEP---KFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSE--WGVSK 1333
Query: 854 SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNES---GW 684
+ E + S G +GW +KK E G+WG K E+ W
Sbjct: 1334 NAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNW 1393
Query: 683 GTERTENEAV---------------------WGSKKPETEKGSGSGSWGQKVVSGKE--G 573
GT+ +N++V WG K ETE +WG+K +
Sbjct: 1394 GTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETE--PAPAAWGKKNSESESAAA 1451
Query: 572 GWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAA--- 402
WG+ N + +G WG P+ E+ ++ WGS +T + A
Sbjct: 1452 AWGSSDKKNTGTESDAAG--WGS--AYKKNPETEL--NAAAWGSGAKMNKETEPAPAAWG 1505
Query: 401 -WGKKAEDT-PAVPTWN-QGQKTVEKGEQAGSWTS-------------WAKKDDKKDQ-- 276
WGKK+ +T W +G++ E AG W S W +D K +
Sbjct: 1506 SWGKKSSETVSGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETE 1565
Query: 275 -----FASQVEDSSKTNQWGKKEAGSSASSWG 195
+ SQ +++S+T E GS A++WG
Sbjct: 1566 SGGAAWGSQAKNNSET------EPGSGAAAWG 1591
>ref|XP_019225779.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2
[Nicotiana attenuata]
Length = 1983
Score = 129 bits (323), Expect = 5e-29
Identities = 118/348 (33%), Positives = 156/348 (44%), Gaps = 56/348 (16%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDT--------NTEKG---SSWGQKV 891
WG + D P + T + + + S WG K +T N E+ SSWG+KV
Sbjct: 1389 WGGKAKEVDSNPQQSGNTAQ---SGSWSAWGKKVDETGNSPRQSGNEEQSGSLSSWGKKV 1445
Query: 890 AKADEAGWGSKKSDDTENG---------SGSVAGSWGQKVVSGIEAGWGAKKMENETEKG 738
K D WG KK ++TEN SGS++ SWG+KV ++ WG KK+E +
Sbjct: 1446 EK-DGGSWG-KKVEETENHNHQSGKDEKSGSLS-SWGKKVEKDGDSSWG-KKVEID---- 1497
Query: 737 SGSGSWGQKAISKNESGWG--TERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWG 564
G SWG+K S WG E EN + K+ EK SWG+KV + WG
Sbjct: 1498 -GGSSWGKKVEIDGGSSWGKKVEEAENHSHRSGKE---EKSESLSSWGKKVENNGVSSWG 1553
Query: 563 ADKLVNDSEKGAGS-----GSSWGQKVVTPSQPQAEVAKDSGQWGSKE------SWKAQT 417
K+ ND G G SWG+KV QAE+ S Q G +E SW +
Sbjct: 1554 K-KVENDGVSSWGKKVEKDGGSWGKKV-----EQAEI--HSHQSGKEEKSESLSSWGKKV 1605
Query: 416 GSSAAWGKKAEDTPAVPTWNQGQKTVE-------KGEQAGSWTSWAK--KDDKKDQFASQ 264
+WGKK E +W G+ E KGEQ+GSW+SW K K+D + +
Sbjct: 1606 EKDGSWGKKVEKDGG-SSWG-GKVEAENTPRPSGKGEQSGSWSSWGKQVKEDGGASWGKK 1663
Query: 263 VEDSSKTNQWGKK--------------EAGSSASSWGKPVQKTDAPSW 162
VE ++ WGKK E S SSWGK V+K D SW
Sbjct: 1664 VEKDGGSS-WGKKVDEPEDKPHQSGNGEQSGSWSSWGKKVEK-DGGSW 1709
Score = 124 bits (311), Expect = 2e-27
Identities = 99/292 (33%), Positives = 137/292 (46%), Gaps = 10/292 (3%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG +KD + S WG K + S WG K + GSSWG+KV +A+ S
Sbjct: 1478 WGKK-VEKDGDSS--WGKKVE--IDGGSSWGKK---VEIDGGSSWGKKVEEAENHSHRSG 1529
Query: 857 KSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGT 678
K + +E+ S SWG+KV + + WG KK+EN+ G SWG+K + K+ WG
Sbjct: 1530 KEEKSESLS-----SWGKKVENNGVSSWG-KKVEND-----GVSSWGKK-VEKDGGSWG- 1576
Query: 677 ERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKV 498
++ E + + + EK SWG+KV K+G WG K+ D GSSWG KV
Sbjct: 1577 KKVEQAEIHSHQSGKEEKSESLSSWGKKVE--KDGSWGK-KVEKDG------GSSWGGKV 1627
Query: 497 VTPSQPQAE-VAKDSGQWGSKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVE----- 336
+ P+ + SG W S + G A+WGKK E +W G+K E
Sbjct: 1628 EAENTPRPSGKGEQSGSWSSWGKQVKEDGG-ASWGKKVEKDGG-SSW--GKKVDEPEDKP 1683
Query: 335 ----KGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGSSASSWGK 192
GEQ+GSW+SW KK +K WG + +S SSWGK
Sbjct: 1684 HQSGNGEQSGSWSSWGKKVEKDG------------GSWGGPKQSNSESSWGK 1723
Score = 106 bits (264), Expect = 3e-21
Identities = 88/315 (27%), Positives = 129/315 (40%), Gaps = 40/315 (12%)
Frame = -2
Query: 992 WGTKKDDTAAAASGWGTKKPDTNTEKG-------SSWGQKVAKADE-------------- 876
W + + W K EK SSWG+KV +A+
Sbjct: 1327 WEKASSENVKSGGSWDMAKTQNGAEKAVNQSDSWSSWGRKVDEAENNPRESGNGEQLESW 1386
Query: 875 AGWGSKK----SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKA 708
+ WG K S+ ++G+ + +GSW E G ++ NE + GS S SWG+K
Sbjct: 1387 SAWGGKAKEVDSNPQQSGNTAQSGSWSAWGKKVDETGNSPRQSGNEEQSGSLS-SWGKK- 1444
Query: 707 ISKNESGWG--TERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEK 534
+ K+ WG E TEN + + EK SWG+KV + WG K+ D
Sbjct: 1445 VEKDGGSWGKKVEETENH---NHQSGKDEKSGSLSSWGKKVEKDGDSSWGK-KVEIDGGS 1500
Query: 533 GAGS------GSSWGQKVVTPSQPQAEVAKDSGQWGSKESW--KAQTGSSAAWGKKAEDT 378
G GSSWG+KV K+ S SW K + ++WGKK E+
Sbjct: 1501 SWGKKVEIDGGSSWGKKVEEAENHSHRSGKEEKS-ESLSSWGKKVENNGVSSWGKKVEND 1559
Query: 377 PAVPTWNQ-----GQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGS 213
V +W + G +K EQA + + K++K + +S + K WGKK
Sbjct: 1560 -GVSSWGKKVEKDGGSWGKKVEQAEIHSHQSGKEEKSESLSSWGKKVEKDGSWGKKVEKD 1618
Query: 212 SASSWGKPVQKTDAP 168
SSWG V+ + P
Sbjct: 1619 GGSSWGGKVEAENTP 1633
Score = 89.7 bits (221), Expect = 9e-16
Identities = 81/307 (26%), Positives = 122/307 (39%), Gaps = 19/307 (6%)
Frame = -2
Query: 1025 NPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSKKSDD 846
+P++D +P +D A +G + D GS+W +K + + GS
Sbjct: 1290 SPERDSGSDKP---TFEDRAEFDNGIENENLDEGKLSGSAW-EKASSENVKSGGSWDMAK 1345
Query: 845 TENGSGSVAG------SWGQKVVSGIEAGWGAKKMENETEKGSGS-----GSWGQKAI-- 705
T+NG+ SWG+KV + N E G+G +WG KA
Sbjct: 1346 TQNGAEKAVNQSDSWSSWGRKV---------DEAENNPRESGNGEQLESWSAWGGKAKEV 1396
Query: 704 -SKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGA 528
S + T ++ + + WG K ET G+ G + SG WG +K
Sbjct: 1397 DSNPQQSGNTAQSGSWSAWGKKVDET--GNSPRQSGNEEQSGSLSSWG--------KKVE 1446
Query: 527 GSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESW--KAQTGSSAAWGKKAEDTPAVPTWNQ 354
G SWG+KV + KD GS SW K + ++WGKK E
Sbjct: 1447 KDGGSWGKKVEETENHNHQSGKDEKS-GSLSSWGKKVEKDGDSSWGKKVEI--------D 1497
Query: 353 GQKTVEKGEQAGSWTSWAKKDDKKDQFA---SQVEDSSKTNQWGKKEAGSSASSWGKPVQ 183
G + K + +SW KK ++ + + + E S + WGKK + SSWGK V+
Sbjct: 1498 GGSSWGKKVEIDGGSSWGKKVEEAENHSHRSGKEEKSESLSSWGKKVENNGVSSWGKKVE 1557
Query: 182 KTDAPSW 162
SW
Sbjct: 1558 NDGVSSW 1564
Score = 81.3 bits (199), Expect = 6e-13
Identities = 95/372 (25%), Positives = 141/372 (37%), Gaps = 27/372 (7%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG Q ++ + + K++ + + S WG K EK SWG+KV K + WG K
Sbjct: 1575 WGKKVEQAEIHSHQ---SGKEEKSESLSSWGKK-----VEKDGSWGKKVEKDGGSSWGGK 1626
Query: 857 ---KSDDTENGSGSVAGSW---------------GQKVVSGIEAGWGAKKMENET---EK 741
++ +G G +GSW G+KV + WG K E E +
Sbjct: 1627 VEAENTPRPSGKGEQSGSWSSWGKQVKEDGGASWGKKVEKDGGSSWGKKVDEPEDKPHQS 1686
Query: 740 GSGS-----GSWGQKAISKNESGWGTERTEN-EAVWGSKKPETEKGSGSGSWGQKVVSGK 579
G+G SWG+K + K+ WG + N E+ WG +T KG G GS +
Sbjct: 1687 GNGEQSGSWSSWGKK-VEKDGGSWGGPKQSNSESSWG----KTTKGGGFGS------AAA 1735
Query: 578 EGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAW 399
EG D+LVN G S S +++ ++P ++ A G W S
Sbjct: 1736 EGNRRVDQLVN----GWSSSISGDEQL---NEPTSDDATKVGGWNSS------------- 1775
Query: 398 GKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEA 219
V WN + VE+ ++ W ++ + + F D+S+ WG
Sbjct: 1776 --------TVGGWNSQKVGVEESDKQPQWGQ--RRRNPRGDF----RDNSR--GWG---- 1815
Query: 218 GSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPARPVGGPNDGPRAVVP 39
SS W K + PAR N G
Sbjct: 1816 SSSGGEW--------------------------------KGNRPARSADDSNRGGN---- 1839
Query: 38 FTATKQRLDIFT 3
FTAT+QR+DIFT
Sbjct: 1840 FTATRQRMDIFT 1851
>ref|XP_019225778.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
[Nicotiana attenuata]
gb|OIT32449.1| dna-directed rna polymerase v subunit 1 [Nicotiana attenuata]
Length = 2036
Score = 126 bits (317), Expect = 3e-28
Identities = 116/335 (34%), Positives = 152/335 (45%), Gaps = 58/335 (17%)
Frame = -2
Query: 992 WGTKKDDTAAAAS--GWGTKKPDT--------NTEKG---SSWGQKVAKADEAGWGSKKS 852
WG + +TA + S WG K + N E+ SSWG+KV K D WG KK
Sbjct: 1452 WGKQSGNTAQSGSWSAWGKKVDEAGNSPRQSGNEEQSGSLSSWGKKVEK-DGGSWG-KKV 1509
Query: 851 DDTENG---------SGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISK 699
++TEN SGS++ SWG+KV ++ WG KK+E + G SWG+K
Sbjct: 1510 EETENHNHQSGKDEKSGSLS-SWGKKVEKDGDSSWG-KKVEID-----GGSSWGKKVEID 1562
Query: 698 NESGWG--TERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAG 525
S WG E EN + K+ EK SWG+KV + WG K+ ND G
Sbjct: 1563 GGSSWGKKVEEAENHSHRSGKE---EKSESLSSWGKKVENNGVSSWGK-KVENDGVSSWG 1618
Query: 524 S-----GSSWGQKVVTPSQPQAEVAKDSGQWGSKE------SWKAQTGSSAAWGKKAEDT 378
G SWG+KV QAE+ S Q G +E SW + +WGKK E
Sbjct: 1619 KKVEKDGGSWGKKV-----EQAEI--HSHQSGKEEKSESLSSWGKKVEKDGSWGKKVEKD 1671
Query: 377 PAVPTWNQGQKTVE-------KGEQAGSWTSWAK--KDDKKDQFASQVEDSSKTNQWGKK 225
+W G+ E KGEQ+GSW+SW K K+D + +VE ++ WGKK
Sbjct: 1672 GG-SSWG-GKVEAENTPRPSGKGEQSGSWSSWGKQVKEDGGASWGKKVEKDGGSS-WGKK 1728
Query: 224 --------------EAGSSASSWGKPVQKTDAPSW 162
E S SSWGK V+K D SW
Sbjct: 1729 VDEPEDKPHQSGNGEQSGSWSSWGKKVEK-DGGSW 1762
Score = 124 bits (311), Expect = 2e-27
Identities = 99/292 (33%), Positives = 137/292 (46%), Gaps = 10/292 (3%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG +KD + S WG K + S WG K + GSSWG+KV +A+ S
Sbjct: 1531 WGKK-VEKDGDSS--WGKKVE--IDGGSSWGKK---VEIDGGSSWGKKVEEAENHSHRSG 1582
Query: 857 KSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKAISKNESGWGT 678
K + +E+ S SWG+KV + + WG KK+EN+ G SWG+K + K+ WG
Sbjct: 1583 KEEKSESLS-----SWGKKVENNGVSSWG-KKVEND-----GVSSWGKK-VEKDGGSWG- 1629
Query: 677 ERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSEKGAGSGSSWGQKV 498
++ E + + + EK SWG+KV K+G WG K+ D GSSWG KV
Sbjct: 1630 KKVEQAEIHSHQSGKEEKSESLSSWGKKVE--KDGSWGK-KVEKDG------GSSWGGKV 1680
Query: 497 VTPSQPQAE-VAKDSGQWGSKESWKAQTGSSAAWGKKAEDTPAVPTWNQGQKTVE----- 336
+ P+ + SG W S + G A+WGKK E +W G+K E
Sbjct: 1681 EAENTPRPSGKGEQSGSWSSWGKQVKEDGG-ASWGKKVEKDGG-SSW--GKKVDEPEDKP 1736
Query: 335 ----KGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAGSSASSWGK 192
GEQ+GSW+SW KK +K WG + +S SSWGK
Sbjct: 1737 HQSGNGEQSGSWSSWGKKVEKDG------------GSWGGPKQSNSESSWGK 1776
Score = 119 bits (298), Expect = 1e-25
Identities = 98/316 (31%), Positives = 141/316 (44%), Gaps = 26/316 (8%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDT--------NTEKG---SSWGQKV 891
WG + D P + T + + + S WG K +T N E+ SSWG+KV
Sbjct: 1389 WGGKAKEVDSNPQQSGNTAQ---SGSWSAWGKKVDETGNSPRQSGNEEQSGSLSSWGKKV 1445
Query: 890 AKADEAGWGSKKSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQK 711
K D WG + + ++GS S +WG+KV EAG ++ NE + GS S SWG+K
Sbjct: 1446 EK-DGGSWGKQSGNTAQSGSWS---AWGKKVD---EAGNSPRQSGNEEQSGSLS-SWGKK 1497
Query: 710 AISKNESGWG--TERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVNDSE 537
+ K+ WG E TEN + + EK SWG+KV + WG K+ D
Sbjct: 1498 -VEKDGGSWGKKVEETENH---NHQSGKDEKSGSLSSWGKKVEKDGDSSWGK-KVEIDGG 1552
Query: 536 KGAGS------GSSWGQKVVTPSQPQAEVAKDSGQWGSKESW--KAQTGSSAAWGKKAED 381
G GSSWG+KV K+ S SW K + ++WGKK E+
Sbjct: 1553 SSWGKKVEIDGGSSWGKKVEEAENHSHRSGKEEKS-ESLSSWGKKVENNGVSSWGKKVEN 1611
Query: 380 TPAVPTWNQ-----GQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEAG 216
V +W + G +K EQA + + K++K + +S + K WGKK
Sbjct: 1612 D-GVSSWGKKVEKDGGSWGKKVEQAEIHSHQSGKEEKSESLSSWGKKVEKDGSWGKKVEK 1670
Query: 215 SSASSWGKPVQKTDAP 168
SSWG V+ + P
Sbjct: 1671 DGGSSWGGKVEAENTP 1686
Score = 106 bits (265), Expect = 2e-21
Identities = 84/255 (32%), Positives = 119/255 (46%), Gaps = 13/255 (5%)
Frame = -2
Query: 887 KADEAGWGSKKSDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKA 708
K + W S++ ++G GSW GA+K N+++ S SWG+K
Sbjct: 1321 KLSGSAWEKASSENVKSG-----GSWDMAKTQN-----GAEKAVNQSDSWS---SWGRKV 1367
Query: 707 I----SKNESGWGTERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWG--ADKLVN 546
+ ESG G E+ E+ + WG K E + S G SG WG D+ N
Sbjct: 1368 DEAENNPRESGNG-EQLESWSAWGGKAKEVD--SNPQQSGNTAQSGSWSAWGKKVDETGN 1424
Query: 545 D-----SEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAWGKKAED 381
+E+ +GS SSWG+KV KD G WG + AQ+GS +AWGKK ++
Sbjct: 1425 SPRQSGNEEQSGSLSSWGKKV----------EKDGGSWGKQSGNTAQSGSWSAWGKKVDE 1474
Query: 380 TPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKK-DQFASQVEDSSKTN-QWGKKEAGSSA 207
P + + EQ+GS +SW KK +K + +VE++ N Q GK E S
Sbjct: 1475 AGNSPRQSGNE------EQSGSLSSWGKKVEKDGGSWGKKVEETENHNHQSGKDEKSGSL 1528
Query: 206 SSWGKPVQKTDAPSW 162
SSWGK V+K SW
Sbjct: 1529 SSWGKKVEKDGDSSW 1543
Score = 103 bits (258), Expect = 2e-20
Identities = 84/312 (26%), Positives = 125/312 (40%), Gaps = 35/312 (11%)
Frame = -2
Query: 992 WGTKKDDTAAAASGWGTKKPDTNTEKG-------SSWGQKVAKADE-------------- 876
W + + W K EK SSWG+KV +A+
Sbjct: 1327 WEKASSENVKSGGSWDMAKTQNGAEKAVNQSDSWSSWGRKVDEAENNPRESGNGEQLESW 1386
Query: 875 AGWGSKK----SDDTENGSGSVAGSWGQKVVSGIEAGWGAKKMENETEKGSGSGSWGQKA 708
+ WG K S+ ++G+ + +GSW E G ++ NE + GS S SWG+K
Sbjct: 1387 SAWGGKAKEVDSNPQQSGNTAQSGSWSAWGKKVDETGNSPRQSGNEEQSGSLS-SWGKK- 1444
Query: 707 ISKNESGWG-----TERTENEAVWGSKKPETEKGSGSGSWGQKVVSGKEGGWGADKLVND 543
+ K+ WG T ++ + + WG K E G+ G + SG WG
Sbjct: 1445 VEKDGGSWGKQSGNTAQSGSWSAWGKKVDEA--GNSPRQSGNEEQSGSLSSWG------- 1495
Query: 542 SEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESW--KAQTGSSAAWGKKAEDTPAV 369
+K G SWG+KV + KD GS SW K + ++WGKK E
Sbjct: 1496 -KKVEKDGGSWGKKVEETENHNHQSGKDEKS-GSLSSWGKKVEKDGDSSWGKKVEI---- 1549
Query: 368 PTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFA---SQVEDSSKTNQWGKKEAGSSASSW 198
G + K + +SW KK ++ + + + E S + WGKK + SSW
Sbjct: 1550 ----DGGSSWGKKVEIDGGSSWGKKVEEAENHSHRSGKEEKSESLSSWGKKVENNGVSSW 1605
Query: 197 GKPVQKTDAPSW 162
GK V+ SW
Sbjct: 1606 GKKVENDGVSSW 1617
Score = 81.3 bits (199), Expect = 6e-13
Identities = 95/372 (25%), Positives = 141/372 (37%), Gaps = 27/372 (7%)
Frame = -2
Query: 1037 WGSNNPQKDVEPSEPWGTKKDDTAAAASGWGTKKPDTNTEKGSSWGQKVAKADEAGWGSK 858
WG Q ++ + + K++ + + S WG K EK SWG+KV K + WG K
Sbjct: 1628 WGKKVEQAEIHSHQ---SGKEEKSESLSSWGKK-----VEKDGSWGKKVEKDGGSSWGGK 1679
Query: 857 ---KSDDTENGSGSVAGSW---------------GQKVVSGIEAGWGAKKMENET---EK 741
++ +G G +GSW G+KV + WG K E E +
Sbjct: 1680 VEAENTPRPSGKGEQSGSWSSWGKQVKEDGGASWGKKVEKDGGSSWGKKVDEPEDKPHQS 1739
Query: 740 GSGS-----GSWGQKAISKNESGWGTERTEN-EAVWGSKKPETEKGSGSGSWGQKVVSGK 579
G+G SWG+K + K+ WG + N E+ WG +T KG G GS +
Sbjct: 1740 GNGEQSGSWSSWGKK-VEKDGGSWGGPKQSNSESSWG----KTTKGGGFGS------AAA 1788
Query: 578 EGGWGADKLVNDSEKGAGSGSSWGQKVVTPSQPQAEVAKDSGQWGSKESWKAQTGSSAAW 399
EG D+LVN G S S +++ ++P ++ A G W S
Sbjct: 1789 EGNRRVDQLVN----GWSSSISGDEQL---NEPTSDDATKVGGWNSS------------- 1828
Query: 398 GKKAEDTPAVPTWNQGQKTVEKGEQAGSWTSWAKKDDKKDQFASQVEDSSKTNQWGKKEA 219
V WN + VE+ ++ W ++ + + F D+S+ WG
Sbjct: 1829 --------TVGGWNSQKVGVEESDKQPQWGQ--RRRNPRGDF----RDNSR--GWG---- 1868
Query: 218 GSSASSWGKPVQKTDAPSWNXXXXXXXXXXXXXXXXXGPKRDHPARPVGGPNDGPRAVVP 39
SS W K + PAR N G
Sbjct: 1869 SSSGGEW--------------------------------KGNRPARSADDSNRGGN---- 1892
Query: 38 FTATKQRLDIFT 3
FTAT+QR+DIFT
Sbjct: 1893 FTATRQRMDIFT 1904