BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00024746
         (436 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVH87043.1| RNA-processing protein, HAT helix [Cynara cardunc...    78   6e-14
ref|XP_022035507.1| pre-mRNA-processing factor 39 isoform X4 [He...    60   2e-07
ref|XP_022035506.1| pre-mRNA-processing factor 39 isoform X3 [He...    60   2e-07
ref|XP_022035505.1| pre-mRNA-processing factor 39 isoform X2 [He...    60   2e-07
ref|XP_022035504.1| pre-mRNA-processing factor 39 isoform X1 [He...    60   2e-07

>gb|KVH87043.1| RNA-processing protein, HAT helix [Cynara cardunculus var. scolymus]
          Length = 897

 Score = 78.2 bits (191), Expect = 6e-14
 Identities = 52/126 (41%), Positives = 66/126 (52%), Gaps = 15/126 (11%)
 Frame = -3

Query: 347  PVSLESLSLCTREEEPNDLNHKSSTALEDTMNPSTANQNFATDSPKRPDVTDEHGSE--- 177
            PVSLESLSL TRE+ PN L     +   +  + ST N   AT+S K+ + T+EHGSE   
Sbjct: 654  PVSLESLSLLTREKGPNVLEDTVPSVNNENPSTSTRNPFSATESAKKQNGTEEHGSESLS 713

Query: 176  -----------TDPPQIPSQYVET-CKTNHMLTASELVSPEPTAHIVTIAQLPNKDYPTV 33
                       TDP Q  SQ  ET CKTNHMLTASE  S E         + P++ +P +
Sbjct: 714  FSPGHRNLREQTDPQQYSSQNPETCCKTNHMLTASEDASAESDGQPRQHHRQPHQGFPLI 773

Query: 32   PNAPQN 15
              +  N
Sbjct: 774  HESTAN 779


>ref|XP_022035507.1| pre-mRNA-processing factor 39 isoform X4 [Helianthus annuus]
 ref|XP_022035508.1| pre-mRNA-processing factor 39 isoform X4 [Helianthus annuus]
          Length = 903

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 46/119 (38%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
 Frame = -3

Query: 338 LESLSLCTREEEPNDLNHKSSTALEDTMNPSTANQNF------ATDSPKRPDVTDEHGSE 177
           LE L    R    ND  H S    + T NPS ++QN       AT   K  ++  E   E
Sbjct: 612 LEGLKHQPRNLSQNDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPE 671

Query: 176 TDPPQIPSQYVETCKTNHMLTASELV----SPEPTA-----HIVTIAQLPNKDYPTVPN 27
           TDP QIPS+  ETC+TN+MLTASE V     P+  A     H+ T    P   YP   N
Sbjct: 672 TDPHQIPSRNTETCETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 730


>ref|XP_022035506.1| pre-mRNA-processing factor 39 isoform X3 [Helianthus annuus]
          Length = 920

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 46/119 (38%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
 Frame = -3

Query: 338 LESLSLCTREEEPNDLNHKSSTALEDTMNPSTANQNF------ATDSPKRPDVTDEHGSE 177
           LE L    R    ND  H S    + T NPS ++QN       AT   K  ++  E   E
Sbjct: 629 LEGLKHQPRNLSQNDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPE 688

Query: 176 TDPPQIPSQYVETCKTNHMLTASELV----SPEPTA-----HIVTIAQLPNKDYPTVPN 27
           TDP QIPS+  ETC+TN+MLTASE V     P+  A     H+ T    P   YP   N
Sbjct: 689 TDPHQIPSRNTETCETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 747


>ref|XP_022035505.1| pre-mRNA-processing factor 39 isoform X2 [Helianthus annuus]
 gb|OTG29091.1| putative tetratricopeptide-like helical domain-containing protein
           [Helianthus annuus]
          Length = 925

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 46/119 (38%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
 Frame = -3

Query: 338 LESLSLCTREEEPNDLNHKSSTALEDTMNPSTANQNF------ATDSPKRPDVTDEHGSE 177
           LE L    R    ND  H S    + T NPS ++QN       AT   K  ++  E   E
Sbjct: 634 LEGLKHQPRNLSQNDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPE 693

Query: 176 TDPPQIPSQYVETCKTNHMLTASELV----SPEPTA-----HIVTIAQLPNKDYPTVPN 27
           TDP QIPS+  ETC+TN+MLTASE V     P+  A     H+ T    P   YP   N
Sbjct: 694 TDPHQIPSRNTETCETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 752


>ref|XP_022035504.1| pre-mRNA-processing factor 39 isoform X1 [Helianthus annuus]
          Length = 926

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 46/119 (38%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
 Frame = -3

Query: 338 LESLSLCTREEEPNDLNHKSSTALEDTMNPSTANQNF------ATDSPKRPDVTDEHGSE 177
           LE L    R    ND  H S    + T NPS ++QN       AT   K  ++  E   E
Sbjct: 635 LEGLKHQPRNLSQNDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPE 694

Query: 176 TDPPQIPSQYVETCKTNHMLTASELV----SPEPTA-----HIVTIAQLPNKDYPTVPN 27
           TDP QIPS+  ETC+TN+MLTASE V     P+  A     H+ T    P   YP   N
Sbjct: 695 TDPHQIPSRNTETCETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 753