BLASTX nr result

ID: Chrysanthemum22_contig00022921 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00022921
         (394 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_021745324.1| replication factor A protein 1-like [Chenopo...    55   3e-06
ref|XP_021839607.1| replication protein A 70 kDa DNA-binding sub...    55   5e-06

>ref|XP_021745324.1| replication factor A protein 1-like [Chenopodium quinoa]
          Length = 248

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
 Frame = +1

Query: 19  ISDLSAVRDNIVLRVRIIRAWMQPVHSKPKVIN-LELIIMDEQGAKMQATVRMSLVPR 189
           ISDL+ ++++  ++ RI+R W QP +S  K IN LELI++DE+G+ +QAT+  SL+ R
Sbjct: 6   ISDLTPLKESWRIKARIVRLWYQPDYSNIKKINSLELILVDEKGSNLQATIEESLIRR 63


>ref|XP_021839607.1| replication protein A 70 kDa DNA-binding subunit C-like, partial
           [Spinacia oleracea]
          Length = 360

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 23/58 (39%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = +1

Query: 19  ISDLSAVRDNIVLRVRIIRAWMQPVHSKPKVIN-LELIIMDEQGAKMQATVRMSLVPR 189
           I D++ V++N  ++VRI+  W+ P  + PKV N +E++++DE+G+K+QA+++ SL+ R
Sbjct: 6   ICDITPVKENWRIKVRIVGLWLAPEWNNPKVTNSIEMVLIDEKGSKIQASIKKSLIER 63


Top