BLASTX nr result

ID: Chrysanthemum22_contig00022046 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00022046
         (632 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVI01913.1| Histone deacetylase superfamily [Cynara carduncul...    67   2e-10
ref|XP_022028029.1| histone deacetylase 6 [Helianthus annuus] >g...    63   6e-09
ref|XP_023771909.1| histone deacetylase 6 [Lactuca sativa] >gi|1...    56   3e-06

>gb|KVI01913.1| Histone deacetylase superfamily [Cynara cardunculus var. scolymus]
          Length = 164

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 32/49 (65%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
 Frame = -1

Query: 146 MADKQKTVCDXXXXSTHDQSKLDEEQE-ALLAIYGSEPGWVEARTHCDH 3
           M DK+KTVCD     + DQSK++EE+E AL+A+YGSE GWVEAR HCDH
Sbjct: 1   MGDKEKTVCDSSSS-SRDQSKVEEEEEEALMALYGSESGWVEARIHCDH 48


>ref|XP_022028029.1| histone deacetylase 6 [Helianthus annuus]
 gb|OTG30940.1| putative histone deacetylase, Zinc finger, UBP-type, Zinc finger,
           RING/FYVE/PHD-type [Helianthus annuus]
          Length = 160

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 30/48 (62%), Positives = 37/48 (77%)
 Frame = -1

Query: 146 MADKQKTVCDXXXXSTHDQSKLDEEQEALLAIYGSEPGWVEARTHCDH 3
           MADK+K VCD     +HDQSK +E+   L+A+YGS+ GWVEARTHCDH
Sbjct: 1   MADKEKKVCDSSS--SHDQSKQEED---LMALYGSDSGWVEARTHCDH 43


>ref|XP_023771909.1| histone deacetylase 6 [Lactuca sativa]
 gb|PLY79241.1| hypothetical protein LSAT_9X112460 [Lactuca sativa]
          Length = 166

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/48 (60%), Positives = 33/48 (68%)
 Frame = -1

Query: 146 MADKQKTVCDXXXXSTHDQSKLDEEQEALLAIYGSEPGWVEARTHCDH 3
           MADK+K V D     + DQS + EE   L+A YGSE GWVEARTHCDH
Sbjct: 1   MADKEKMVYDSSSS-SRDQSNVGEED--LMAFYGSESGWVEARTHCDH 45


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