BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00020946
         (437 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [A...   199   2e-63
gb|PLY80482.1| hypothetical protein LSAT_2X67161 [Lactuca sativa]     193   1e-60
gb|OAY44345.1| hypothetical protein MANES_08G141900 [Manihot esc...   190   2e-59
ref|XP_010027764.1| PREDICTED: DNA-directed RNA polymerase II su...   189   2e-59
ref|XP_006847979.1| DNA-directed RNA polymerase II subunit 4 [Am...   189   3e-59
ref|XP_022939401.1| DNA-directed RNA polymerase II subunit 4-lik...   188   4e-59
ref|XP_022011171.1| DNA-directed RNA polymerase II subunit 4 [He...   188   4e-59
gb|OTF94393.1| putative DNA-directed RNA polymerase II subunit r...   190   6e-59
ref|XP_021684994.1| DNA-directed RNA polymerase II subunit 4-lik...   188   6e-59
ref|XP_021619869.1| DNA-directed RNA polymerase II subunit 4 [Ma...   188   6e-59
ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II su...   188   6e-59
ref|XP_022954766.1| DNA-directed RNA polymerase II subunit 4 [Cu...   187   9e-59
ref|XP_022133507.1| DNA-directed RNA polymerase II subunit 4 [Mo...   187   9e-59
gb|PNT27724.1| hypothetical protein POPTR_007G080400v3 [Populus ...   187   1e-58
ref|XP_022751025.1| DNA-directed RNA polymerase II subunit 4-lik...   186   1e-58
ref|XP_023770287.1| DNA-directed RNA polymerase II subunit 4 [La...   187   1e-58
ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II su...   187   1e-58
ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidop...   187   1e-58
ref|XP_020878188.1| DNA-directed RNA polymerase II subunit 4 [Ar...   187   1e-58
ref|XP_024180723.1| DNA-directed RNA polymerase II subunit 4 [Ro...   187   2e-58

>gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
          Length = 138

 Score =  199 bits (507), Expect = 2e-63
 Identities = 99/99 (100%), Positives = 99/99 (100%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 99


>gb|PLY80482.1| hypothetical protein LSAT_2X67161 [Lactuca sativa]
          Length = 166

 Score =  193 bits (491), Expect = 1e-60
 Identities = 97/110 (88%), Positives = 101/110 (91%)
 Frame = -2

Query: 331 FSIYRFK*LFSMSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSN 152
           + I+R K   SMSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP N
Sbjct: 18  YLIFRLKLSLSMSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPLN 77

Query: 151 QVSQVFEKSLQYVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           QVSQVFEKSLQYVKRFSRYKNPDAVRQVRELLSR QLAEFELCVLGNLCP
Sbjct: 78  QVSQVFEKSLQYVKRFSRYKNPDAVRQVRELLSRQQLAEFELCVLGNLCP 127


>gb|OAY44345.1| hypothetical protein MANES_08G141900 [Manihot esculenta]
          Length = 155

 Score =  190 bits (482), Expect = 2e-59
 Identities = 97/112 (86%), Positives = 103/112 (91%), Gaps = 2/112 (1%)
 Frame = -2

Query: 331 FSIYRF--K*LFSMSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDP 158
           F IY F  + + SMSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+HK EQLQ MSDDP
Sbjct: 5   FLIYTFFLQSVPSMSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDP 64

Query: 157 SNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
            NQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 65  MNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 116


>ref|XP_010027764.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Eucalyptus
           grandis]
 ref|XP_010027765.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Eucalyptus
           grandis]
 ref|XP_010027766.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Eucalyptus
           grandis]
 gb|KCW54358.1| hypothetical protein EUGRSUZ_I00318 [Eucalyptus grandis]
 gb|KCW54359.1| hypothetical protein EUGRSUZ_I00318 [Eucalyptus grandis]
          Length = 138

 Score =  189 bits (480), Expect = 2e-59
 Identities = 93/99 (93%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MSDDP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_006847979.1| DNA-directed RNA polymerase II subunit 4 [Amborella trichopoda]
 ref|XP_011624688.1| DNA-directed RNA polymerase II subunit 4 [Amborella trichopoda]
 gb|ERN09560.1| hypothetical protein AMTR_s00029p00159420 [Amborella trichopoda]
          Length = 139

 Score =  189 bits (479), Expect = 3e-59
 Identities = 92/99 (92%), Positives = 97/99 (97%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIG+EFLKAKCLMNCEV+LILDHK EQLQ MSDDPSNQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGEEFLKAKCLMNCEVALILDHKYEQLQQMSDDPSNQISQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREVLSRNQLAEFELCVLGNLCP 99


>ref|XP_022939401.1| DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata]
 ref|XP_022939402.1| DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata]
 ref|XP_022993195.1| DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima]
 ref|XP_022993196.1| DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima]
 ref|XP_023549816.1| DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo
           subsp. pepo]
 ref|XP_023549818.1| DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo
           subsp. pepo]
          Length = 138

 Score =  188 bits (478), Expect = 4e-59
 Identities = 92/99 (92%), Positives = 97/99 (97%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP+NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_022011171.1| DNA-directed RNA polymerase II subunit 4 [Helianthus annuus]
 ref|XP_022011172.1| DNA-directed RNA polymerase II subunit 4 [Helianthus annuus]
          Length = 138

 Score =  188 bits (478), Expect = 4e-59
 Identities = 93/99 (93%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRELLSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVRELLSRYQLAEFELCVLGNLCP 99


>gb|OTF94393.1| putative DNA-directed RNA polymerase II subunit rpb4 [Helianthus
           annuus]
          Length = 190

 Score =  190 bits (482), Expect = 6e-59
 Identities = 94/100 (94%), Positives = 97/100 (97%)
 Frame = -2

Query: 301 SMSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSL 122
           SMSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP NQVSQVFEKSL
Sbjct: 52  SMSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSL 111

Query: 121 QYVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           QYVKRFSRYKNPDAVRQVRELLSR+QLAEFELCVLGNLCP
Sbjct: 112 QYVKRFSRYKNPDAVRQVRELLSRYQLAEFELCVLGNLCP 151


>ref|XP_021684994.1| DNA-directed RNA polymerase II subunit 4-like [Hevea brasiliensis]
          Length = 138

 Score =  188 bits (477), Expect = 6e-59
 Identities = 91/99 (91%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENA+ELKIGDEFLKAKCLMNCEV+LILDHK EQLQ MSDDP NQ+SQVFEKSLQ
Sbjct: 1   MSGEEEENASELKIGDEFLKAKCLMNCEVALILDHKYEQLQQMSDDPMNQISQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_021619869.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021619871.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021619872.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021619873.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021619874.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021619875.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021619876.1| DNA-directed RNA polymerase II subunit 4 [Manihot esculenta]
 ref|XP_021678660.1| DNA-directed RNA polymerase II subunit 4 [Hevea brasiliensis]
 ref|XP_021678661.1| DNA-directed RNA polymerase II subunit 4 [Hevea brasiliensis]
 gb|OAY44344.1| hypothetical protein MANES_08G141900 [Manihot esculenta]
 gb|OAY44346.1| hypothetical protein MANES_08G141900 [Manihot esculenta]
          Length = 138

 Score =  188 bits (477), Expect = 6e-59
 Identities = 92/99 (92%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+HK EQLQ MSDDP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis
           sativus]
 ref|XP_008456795.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis melo]
 ref|XP_011656444.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cucumis
           sativus]
 gb|KGN45845.1| hypothetical protein Csa_6G014650 [Cucumis sativus]
          Length = 138

 Score =  188 bits (477), Expect = 6e-59
 Identities = 92/99 (92%), Positives = 97/99 (97%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP+NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCP 99


>ref|XP_022954766.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata]
 ref|XP_022954773.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata]
 ref|XP_022954778.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita moschata]
 ref|XP_022990067.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima]
 ref|XP_022990068.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima]
 ref|XP_022990070.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita maxima]
 ref|XP_023536652.1| DNA-directed RNA polymerase II subunit 4 [Cucurbita pepo subsp.
           pepo]
          Length = 138

 Score =  187 bits (476), Expect = 9e-59
 Identities = 92/99 (92%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_022133507.1| DNA-directed RNA polymerase II subunit 4 [Momordica charantia]
          Length = 138

 Score =  187 bits (476), Expect = 9e-59
 Identities = 92/99 (92%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>gb|PNT27724.1| hypothetical protein POPTR_007G080400v3 [Populus trichocarpa]
          Length = 119

 Score =  187 bits (474), Expect = 1e-58
 Identities = 91/99 (91%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGD+FLKAKCLMNCEV+LIL+HK EQLQ MSDDP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_022751025.1| DNA-directed RNA polymerase II subunit 4-like isoform X2 [Durio
           zibethinus]
          Length = 114

 Score =  186 bits (473), Expect = 1e-58
 Identities = 91/99 (91%), Positives = 96/99 (96%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIG+EFLKAKCLMNCEV+LIL+HK EQLQ MSDDP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGEEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCP 99


>ref|XP_023770287.1| DNA-directed RNA polymerase II subunit 4 [Lactuca sativa]
 ref|XP_023770288.1| DNA-directed RNA polymerase II subunit 4 [Lactuca sativa]
          Length = 138

 Score =  187 bits (475), Expect = 1e-58
 Identities = 93/99 (93%), Positives = 95/99 (95%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MS+DP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPLNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRELLSR QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVRELLSRQQLAEFELCVLGNLCP 99


>ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cicer
           arietinum]
 ref|XP_004510223.1| PREDICTED: DNA-directed RNA polymerase II subunit 4 [Cicer
           arietinum]
          Length = 138

 Score =  187 bits (475), Expect = 1e-58
 Identities = 92/99 (92%), Positives = 95/99 (95%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHK EQLQ  SDDP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKYEQLQQSSDDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+L+R+QLAEFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCP 99


>ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
 sp|O48890.1|NRPB4_ARATH RecName: Full=DNA-directed RNA polymerase II subunit 4; AltName:
           Full=15.9 kDa subunit of RNA polymerase II; AltName:
           Full=DNA-directed RNA polymerase II subunit D
 gb|AAB95261.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
 dbj|BAB09413.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
 gb|AAM63291.1| 15.9 kDa subunit of RNA polymerase II [Arabidopsis thaliana]
 gb|ABF58918.1| At5g09920 [Arabidopsis thaliana]
 dbj|BAH19801.1| AT5G09920 [Arabidopsis thaliana]
 gb|AED91467.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
 gb|OAO93495.1| RPB15.9.9 [Arabidopsis thaliana]
          Length = 138

 Score =  187 bits (475), Expect = 1e-58
 Identities = 91/99 (91%), Positives = 95/99 (95%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ +S+DP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSRHQL EFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCP 99


>ref|XP_020878188.1| DNA-directed RNA polymerase II subunit 4 [Arabidopsis lyrata subsp.
           lyrata]
 gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
          Length = 138

 Score =  187 bits (475), Expect = 1e-58
 Identities = 91/99 (91%), Positives = 95/99 (95%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ +S+DP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAVRQVRE+LSRHQL EFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCP 99


>ref|XP_024180723.1| DNA-directed RNA polymerase II subunit 4 [Rosa chinensis]
 gb|PRQ49004.1| putative DNA-directed RNA polymerase [Rosa chinensis]
          Length = 138

 Score =  187 bits (474), Expect = 2e-58
 Identities = 91/99 (91%), Positives = 95/99 (95%)
 Frame = -2

Query: 298 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 119
           MSGEEEENAAELKIGDEFLKAKCLMNCEVSLIL+HK EQLQ MSDDP NQVSQVFEKSLQ
Sbjct: 1   MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQMSDDPRNQVSQVFEKSLQ 60

Query: 118 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCP 2
           YVKRFSRYKNPDAV+QVRE+LSR+QL EFELCVLGNLCP
Sbjct: 61  YVKRFSRYKNPDAVKQVREILSRYQLTEFELCVLGNLCP 99