BLASTX nr result
ID: Chrysanthemum22_contig00019912
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00019912
(3873 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_023763421.1| RNA-dependent RNA polymerase 6 [Lactuca sati... 2028 0.0
ref|XP_022029697.1| RNA-dependent RNA polymerase 6-like [Heliant... 1976 0.0
gb|KVH89612.1| RNA-dependent RNA polymerase, eukaryotic-type [Cy... 1929 0.0
ref|XP_011081567.1| RNA-dependent RNA polymerase 6 [Sesamum indi... 1655 0.0
ref|XP_022845194.1| RNA-dependent RNA polymerase 6 [Olea europae... 1649 0.0
ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Z... 1646 0.0
gb|PIN21599.1| RNA-directed RNA polymerase QDE-1 [Handroanthus i... 1644 0.0
ref|XP_019260524.1| PREDICTED: RNA-dependent RNA polymerase 6 [N... 1634 0.0
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1634 0.0
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 1634 0.0
ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1633 0.0
ref|XP_021276585.1| RNA-dependent RNA polymerase 6 [Herrania umb... 1632 0.0
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1632 0.0
ref|XP_016477231.1| PREDICTED: RNA-dependent RNA polymerase 6 [N... 1630 0.0
gb|KVH99831.1| RNA-dependent RNA polymerase, eukaryotic-type [Cy... 1630 0.0
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 1629 0.0
ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [N... 1629 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1628 0.0
ref|NP_001312583.1| RNA-dependent RNA polymerase 6 [Nicotiana ta... 1622 0.0
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1621 0.0
>ref|XP_023763421.1| RNA-dependent RNA polymerase 6 [Lactuca sativa]
gb|PLY85763.1| hypothetical protein LSAT_1X44761 [Lactuca sativa]
Length = 1199
Score = 2028 bits (5254), Expect = 0.0
Identities = 978/1199 (81%), Positives = 1081/1199 (90%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M+S+R+DK+++VTQVS+GG DN +TAK LLDY+EAK G +WRCRLKKSSTPPDTYPEF+A
Sbjct: 1 MESERSDKELVVTQVSIGGFDNNITAKRLLDYIEAKAGQVWRCRLKKSSTPPDTYPEFDA 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
DL+ IQK++DY+KVEPHAFVH+VD DSV + EA + ELVL+N LKVN+GPEN YRMN
Sbjct: 61 DLENIQKLNDYEKVEPHAFVHFVDPDSVNSIKEAEGKCELVLDNNYLKVNLGPENPYRMN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR +TPF+LSNV LE+GLL++RD F VGWRG SG+DFLIDPFD SCKFLFTK+TAFS
Sbjct: 121 QRRRTKTPFKLSNVVLEIGLLASRDKFLVGWRGPSSGLDFLIDPFDCSCKFLFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLN----LVFQLGTPPVIFYRTADDDIHI 3131
FKGT+++AVIKCNYKVEFL RDVN IKEY ++ LVFQL + P+I YRTADDDI I
Sbjct: 181 FKGTKDHAVIKCNYKVEFLARDVNDIKEYMDYSQASQVLVFQLASAPLISYRTADDDIAI 240
Query: 3130 THPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHP 2951
THPSE LDDDDPWIRTTDFTP GAIGRCNTYR+ IRIRDVPK KKAL FLKEQRV I+HP
Sbjct: 241 THPSEMLDDDDPWIRTTDFTPGGAIGRCNTYRILIRIRDVPKVKKALEFLKEQRVHIDHP 300
Query: 2950 KTKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
L+VE EP FG ++D F I Y+ DI FK+LFLVN+V+++CIINQHQFTEKVFDLLR
Sbjct: 301 TRNLKVENEPDFGSPLRDPFFCIQYKMDIPFKVLFLVNAVLNKCIINQHQFTEKVFDLLR 360
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
EEV VAALKHICSYR P+YDGFTR++IVQ+WL+NNPKLI++ Q D IEVRRL+IT
Sbjct: 361 DAKEEVTVAALKHICSYRRPVYDGFTRVKIVQEWLMNNPKLIDEEGGQKDIIEVRRLIIT 420
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
PSKAYCLPPEVELSNRVLRHYR+VSDRFLRVTFMDEGM+ LNN+VLNFYPAPIVKDITSS
Sbjct: 421 PSKAYCLPPEVELSNRVLRHYRDVSDRFLRVTFMDEGMRTLNNHVLNFYPAPIVKDITSS 480
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
IAQKTTMFRRVKNILSQGFYL GRKY FLAFSANQLRDRSAWFFAE K+TCK I+SWM
Sbjct: 481 FIAQKTTMFRRVKNILSQGFYLCGRKYSFLAFSANQLRDRSAWFFAEKDKLTCKDIISWM 540
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
GKF+N+N+AKCAARMGQCFSSTYATVEVPRHEVDLEL+DIKRN YTFSDG+GK+SPELAL
Sbjct: 541 GKFNNKNVAKCAARMGQCFSSTYATVEVPRHEVDLELEDIKRNGYTFSDGVGKISPELAL 600
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKLQL DNQPCAYQIRYAGCKGVVVWWPDKKGD+IKLSLRPSMNKFES+HT+LEICS
Sbjct: 601 EVAEKLQLKDNQPCAYQIRYAGCKGVVVWWPDKKGDNIKLSLRPSMNKFESDHTVLEICS 660
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTRLQPGFLNRQIITLLSAL V+DDIFW+MQMKMV LN ML DTDVAFDV+TASCAESG
Sbjct: 661 WTRLQPGFLNRQIITLLSALNVEDDIFWNMQMKMVKKLNLMLTDTDVAFDVLTASCAESG 720
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTASIML AGFKPQ+EPHLRGMLSSIRVAQLEDLREKSRIFVQ+GRWLMGC DEL VLEQ
Sbjct: 721 NTASIMLGAGFKPQSEPHLRGMLSSIRVAQLEDLREKSRIFVQDGRWLMGCLDELGVLEQ 780
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVSNPS+ENCFAKHGSRF +T RNL VIEG VVIAKNPCLHPGDVRVLKAVNVPG
Sbjct: 781 GQCFIQVSNPSVENCFAKHGSRFCDTDRNLKVIEGNVVIAKNPCLHPGDVRVLKAVNVPG 840
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
LEHL DCL+FPQKGDRPHTDEASGSDLDGDLYFVTWDE LIPPSK SWPPMEYTAAEAK+
Sbjct: 841 LEHLFDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDEMLIPPSKTSWPPMEYTAAEAKQ 900
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
LPRDV+H+DII+FFTKNMVNDSLGTICNAHVVH+DMS+YGALDEKC KLAELAATAVDFP
Sbjct: 901 LPRDVKHSDIIEFFTKNMVNDSLGTICNAHVVHADMSDYGALDEKCVKLAELAATAVDFP 960
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGKIV+MP LRPKLYPD+MGKE+FQSYKS+KILGKLYRQIK+ ++ D S EL I P
Sbjct: 961 KTGKIVSMPPQLRPKLYPDYMGKESFQSYKSKKILGKLYRQIKDVYNDDVMPSSELHILP 1020
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
+H+PYDKDLEI EA NF+K+AWG KLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKH +
Sbjct: 1021 THVPYDKDLEILEASNFIKEAWGSKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHSS 1080
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGEMKERIKHAY+ALRKDFRKVFDHLGPEFDQ+ E ERN ++E+KASAWYQVTYHPDW
Sbjct: 1081 KKQGEMKERIKHAYSALRKDFRKVFDHLGPEFDQLPEEERNVMFERKASAWYQVTYHPDW 1140
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
VK++L LQEPD E +NLSFAWIAADYLARIKI++ G G G S KPIDSLGRYLADRM
Sbjct: 1141 VKESLDLQEPDGGSETVNLSFAWIAADYLARIKIKKRGKGDGNSCKPIDSLGRYLADRM 1199
>ref|XP_022029697.1| RNA-dependent RNA polymerase 6-like [Helianthus annuus]
gb|OTG32623.1| putative RNA-dependent RNA polymerase 6 [Helianthus annuus]
Length = 1201
Score = 1976 bits (5119), Expect = 0.0
Identities = 963/1201 (80%), Positives = 1078/1201 (89%), Gaps = 6/1201 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ND++++V+QVS+GG NEVTAKMLLDYLE+ G I+RCRLKKSSTPP+TYPEF A
Sbjct: 1 MGSEGNDRELVVSQVSIGGFGNEVTAKMLLDYLESTHGQIYRCRLKKSSTPPETYPEFNA 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
DLD+I+ V DY+KVEPHAFVH+VD +SV + LEAA R ELVL+ LKV++GPEN YRMN
Sbjct: 61 DLDQIKIVTDYEKVEPHAFVHFVDPNSVTSVLEAAGRKELVLDKHVLKVSLGPENPYRMN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RRK+T F+LSNV LE+GL+++RD+F VGWRG DSGVDFLIDPFDRSCKFL TK+TAF
Sbjct: 121 QRRRKKTSFKLSNVVLEIGLMTSRDDFVVGWRGPDSGVDFLIDPFDRSCKFLLTKDTAFC 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNH----LNLVFQLGTPPVIFYRTADDDIHI 3131
FKGT+++AVI+CNYKVEFLVRDVN IKEY ++ L LVFQL + P+I YRTADDDI
Sbjct: 181 FKGTKDHAVIRCNYKVEFLVRDVNDIKEYTDYSESCLVLVFQLASSPLISYRTADDDIIN 240
Query: 3130 THPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHP 2951
T+P E LDDDDPWIRTTDFTPSGAIGRCNTYRV IRIRD K KKAL FLKEQRV +EH
Sbjct: 241 TYPFEMLDDDDPWIRTTDFTPSGAIGRCNTYRVMIRIRDGSKVKKALEFLKEQRVHVEHR 300
Query: 2950 KTKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
KTKL+ E EP FG + D FSIHY+ DISFK++FLVNSV+HRCIINQHQFTE VFDLLR
Sbjct: 301 KTKLKAENEPEFGFPIPDPFFSIHYKPDISFKVMFLVNSVLHRCIINQHQFTENVFDLLR 360
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
Q EEVNVAALKHIC+YRHPLYDGF RL+ VQ+WLLN PK IEKPLEQND IEV RL+IT
Sbjct: 361 DQSEEVNVAALKHICAYRHPLYDGFKRLKTVQEWLLNTPKRIEKPLEQNDVIEVGRLIIT 420
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAY LPPEVELSNRVLRHYR+VSDRFLRVTFMDEGM+ LNNNVLNFYPAPIVKD+TS+
Sbjct: 421 PTKAYALPPEVELSNRVLRHYRQVSDRFLRVTFMDEGMRTLNNNVLNFYPAPIVKDVTST 480
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
+AQKTTMFRRVK+ILS GF+LSGR+Y FLAFSANQLRDRSAWFFAE+GK++CK I++WM
Sbjct: 481 FMAQKTTMFRRVKDILSNGFHLSGRQYCFLAFSANQLRDRSAWFFAENGKISCKNIIAWM 540
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+F+N+NIAKCAARMGQCFSSTYATV+VPRHEV+++L+DIKRNNYTFSDGIG++SPELAL
Sbjct: 541 GRFNNKNIAKCAARMGQCFSSTYATVDVPRHEVNMKLEDIKRNNYTFSDGIGRISPELAL 600
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKLQLTDNQPCAYQIRYAGCKGVV WP+K+G++ KLSLR SMNKFES+HT+LEICS
Sbjct: 601 EVAEKLQLTDNQPCAYQIRYAGCKGVVACWPNKEGENFKLSLRRSMNKFESDHTVLEICS 660
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTRLQPGFLNRQIITLLSAL+VKD+IFWDMQMKMV LN ML +T+VAFDVITASCAESG
Sbjct: 661 WTRLQPGFLNRQIITLLSALDVKDEIFWDMQMKMVEKLNLMLENTEVAFDVITASCAESG 720
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTASIML +GF P+TEPHLRGMLSSIRVAQLEDLREKSRIFV +GRWLMGCFDEL VLEQ
Sbjct: 721 NTASIMLGSGFDPKTEPHLRGMLSSIRVAQLEDLREKSRIFVNDGRWLMGCFDELGVLEQ 780
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVSNPS+ENCFAKHGSRF ET NLTVIEG V+IAKNPCLHPGDVRVLKAVNVPG
Sbjct: 781 GQCFIQVSNPSVENCFAKHGSRFSETTSNLTVIEGTVIIAKNPCLHPGDVRVLKAVNVPG 840
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
LEHL DCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDE+LIPPSKRSWPPMEYTAAEAKE
Sbjct: 841 LEHLFDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKRSWPPMEYTAAEAKE 900
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L RDVR DI+DFFTKNMVNDSLGTICNAHVVH+D+S+ GALDEKC KLAELAATAVDFP
Sbjct: 901 LTRDVRTADIVDFFTKNMVNDSLGTICNAHVVHADLSDDGALDEKCLKLAELAATAVDFP 960
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATT-SPELEID 794
KTGKIVNMP L+PK YPDFMGKENFQSYKSEKILGKLYRQIK+ +++D T ELEI
Sbjct: 961 KTGKIVNMPAQLKPKQYPDFMGKENFQSYKSEKILGKLYRQIKDFYNSDNNTPCSELEIL 1020
Query: 793 PSHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHG 614
PS IPYD+DLE+ ++ +FL DAW CKL YD QLNGLLGQYKV+REEEIVTGHIWSMPKHG
Sbjct: 1021 PSGIPYDEDLEVPDSASFLNDAWDCKLKYDLQLNGLLGQYKVSREEEIVTGHIWSMPKHG 1080
Query: 613 NKKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQIS-EVERNEIYEKKASAWYQVTYHP 437
+KKQGEMK+RIKHAY+ALRK+FRKVFD LG +FDQIS E ERN ++EKKASAWYQVTYHP
Sbjct: 1081 SKKQGEMKDRIKHAYSALRKEFRKVFDQLGVDFDQISEEEERNAVFEKKASAWYQVTYHP 1140
Query: 436 DWVKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADR 257
WVK++LKLQEPD EGE +NLSFAWIAADYLARIKI+R GAG G S KPID LGRY+ADR
Sbjct: 1141 IWVKKSLKLQEPDREGETVNLSFAWIAADYLARIKIKRKGAGPGNSHKPIDMLGRYIADR 1200
Query: 256 M 254
+
Sbjct: 1201 I 1201
>gb|KVH89612.1| RNA-dependent RNA polymerase, eukaryotic-type [Cynara cardunculus
var. scolymus]
Length = 1182
Score = 1929 bits (4996), Expect = 0.0
Identities = 946/1196 (79%), Positives = 1052/1196 (87%), Gaps = 1/1196 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M+++R+DK M +TQVSVGG + V AKMLLDYLE G +WRCR+K SSTPP+TYPEF+A
Sbjct: 1 MEAERSDKDMEITQVSVGGFGDHVKAKMLLDYLEEIVGQVWRCRVKASSTPPNTYPEFDA 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
DL+ IQKVDDY KVEPHAFVH+VD DSV + LE +GELV N KV++GPEN YR+
Sbjct: 61 DLENIQKVDDYKKVEPHAFVHFVDPDSVNSVLEIEGKGELVFLNNPSKVSLGPENPYRI- 119
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
+LSNV LE+G+ ++RDNF VGWRG DSG+DFLIDPFD SCKFLFTK+TAFS
Sbjct: 120 ---------KLSNVVLEIGMFASRDNFLVGWRGPDSGLDFLIDPFDYSCKFLFTKDTAFS 170
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKE-YDNHLNLVFQLGTPPVIFYRTADDDIHITHP 3122
FKGT+N+AVIKCN+KVEFLVR++N IK+ +H+ LVFQL + P+I YRTADDDI ITHP
Sbjct: 171 FKGTKNHAVIKCNFKVEFLVREINDIKDCLQSHMVLVFQLVSAPLISYRTADDDIAITHP 230
Query: 3121 SETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPKTK 2942
+E LDDDDPWIRTTDFTPSGAIGRC+TYRV IRIRDVPKAKKAL FL+ Q V I+ +TK
Sbjct: 231 AEMLDDDDPWIRTTDFTPSGAIGRCHTYRVLIRIRDVPKAKKALDFLRGQSVPIDQFRTK 290
Query: 2941 LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRSQP 2762
L+V+ EP FGI ++D F I YE DISFK+LFLVN+V+HR IINQHQF+EKVFDLLR Q
Sbjct: 291 LKVQNEPEFGIPLRDPFFCIQYEDDISFKVLFLVNAVLHRGIINQHQFSEKVFDLLRDQS 350
Query: 2761 EEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVITPSK 2582
EEVNVAALKHICSYRHPLYDGFTRL+IVQ+WLLNNPKLIEK + Q D EVRRLVITPSK
Sbjct: 351 EEVNVAALKHICSYRHPLYDGFTRLKIVQEWLLNNPKLIEKQIXQKDITEVRRLVITPSK 410
Query: 2581 AYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSSHIA 2402
AYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGM LNN+VLNFYPA IVK IA
Sbjct: 411 AYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMXTLNNHVLNFYPALIVK----GSIA 466
Query: 2401 QKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWMGKF 2222
QKTTMFR+VKNILS+GFYL GR+Y FLAFSANQLRDRSAWFFAE+GK++C I +WMGKF
Sbjct: 467 QKTTMFRKVKNILSEGFYLCGRRYRFLAFSANQLRDRSAWFFAENGKISCTDITAWMGKF 526
Query: 2221 SNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELALEVA 2042
SNRN+AKCAARMGQCFSSTYATV+VPR EVDL L+DIKRN Y FSDGIGKMSPELALEVA
Sbjct: 527 SNRNVAKCAARMGQCFSSTYATVKVPRAEVDLNLEDIKRNGYVFSDGIGKMSPELALEVA 586
Query: 2041 EKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICSWTR 1862
EKLQL DNQPCAYQIRYAGCKGV+VWWP KKGD+IKLSLRPSMNKFES+HT+LEICSWTR
Sbjct: 587 EKLQLKDNQPCAYQIRYAGCKGVIVWWPGKKGDNIKLSLRPSMNKFESDHTVLEICSWTR 646
Query: 1861 LQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESGNTA 1682
LQPGFLNRQIITLLSAL V D+IFW MQ KMV NLNQML DTD+AFDVIT SCAESG+TA
Sbjct: 647 LQPGFLNRQIITLLSALNVGDNIFWKMQTKMVRNLNQMLEDTDMAFDVITTSCAESGSTA 706
Query: 1681 SIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQGQC 1502
SIMLAAGFKP TEPHL GMLSSIRVAQL+DLREKSRIFV +GR LMGC DEL VLEQGQC
Sbjct: 707 SIMLAAGFKPTTEPHLHGMLSSIRVAQLKDLREKSRIFVPKGRLLMGCLDELGVLEQGQC 766
Query: 1501 FIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPGLEH 1322
+IQVSNPS+ENCF KHGSRF ETKRNLTVI+G VVIAKNPCLHPGDVRVL+AV+VPGLEH
Sbjct: 767 YIQVSNPSVENCFVKHGSRFSETKRNLTVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLEH 826
Query: 1321 LVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKELPR 1142
L DCLIFPQKGDRPHTDEASGSDLDGDLYFVTWD++LIPPSK+SWPPMEYTAAEAK LPR
Sbjct: 827 LFDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDKNLIPPSKQSWPPMEYTAAEAKLLPR 886
Query: 1141 DVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFPKTG 962
DV+H+DIIDFFTKNMVND LGTICNA+VVH+DMS+YGAL++ C KLAELAA AVDFPKTG
Sbjct: 887 DVKHSDIIDFFTKNMVNDRLGTICNAYVVHADMSDYGALEKNCIKLAELAAIAVDFPKTG 946
Query: 961 KIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDPSHI 782
KIVNMP +LRPKLYPDFMGKE+FQSYKS+KILGKLY +K+C TD T S EL I PSHI
Sbjct: 947 KIVNMPPALRPKLYPDFMGKESFQSYKSKKILGKLYHHVKDCSATDVTPSSELGILPSHI 1006
Query: 781 PYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGNKKQ 602
YD+DLE+ EA +F+ DAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSM KH +KKQ
Sbjct: 1007 HYDEDLEVREAASFVNDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMSKHTSKKQ 1066
Query: 601 GEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDWVKQ 422
GE+KERIKHAY+ALRK+FRKVFD+LGP+FDQI E ERNE YE+KASAWYQVTYHP WVKQ
Sbjct: 1067 GELKERIKHAYSALRKEFRKVFDYLGPDFDQIPEEERNERYERKASAWYQVTYHPIWVKQ 1126
Query: 421 ALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
+ LQEP + +NLSFAWIAADYLARIKI+R GAG G+SQKPIDSLGRYLADRM
Sbjct: 1127 SQDLQEPGRGDKTVNLSFAWIAADYLARIKIKRRGAGDGRSQKPIDSLGRYLADRM 1182
>ref|XP_011081567.1| RNA-dependent RNA polymerase 6 [Sesamum indicum]
ref|XP_020550370.1| RNA-dependent RNA polymerase 6 [Sesamum indicum]
Length = 1205
Score = 1655 bits (4285), Expect = 0.0
Identities = 799/1206 (66%), Positives = 963/1206 (79%), Gaps = 7/1206 (0%)
Frame = -3
Query: 3850 LETKMDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYP 3671
++ M S+ D ++VTQ+SVGG++N VTAKMLLDY E GL+WRCRLK SSTPP++ P
Sbjct: 1 MKNTMGSEIGDNDLVVTQISVGGLENYVTAKMLLDYFEDNIGLVWRCRLKTSSTPPESNP 60
Query: 3670 EFEADLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENG 3491
+E D + +Q+ DY K+EPHAFVH+ + S + AL+AA RGEL+L K LKV++GP+N
Sbjct: 61 NYEIDAESVQRKTDYVKIEPHAFVHFAVAHSAKAALDAAARGELILGRKPLKVSLGPQNP 120
Query: 3490 YRMNQLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKE 3311
YRMN+ RR TP++LS+V +E+G++ +RD F VGWRG +GVDFL+DPF+ +CK FT+
Sbjct: 121 YRMNERRRTTTPYKLSDVLIEIGVMRSRDEFLVGWRGPRTGVDFLVDPFNGTCKLHFTRN 180
Query: 3310 TAFSFKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLV--FQLGTPPVIFYRTADDDI 3137
TAFSFKG AVIKCN+K+EFL R++N I +Y + +L+ QL + P+++YRTADDDI
Sbjct: 181 TAFSFKGEARSAVIKCNFKIEFLPREINEINQYRDFSSLIVLLQLASSPLVYYRTADDDI 240
Query: 3136 HITHPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVII- 2960
+ P + LDDDDPWIRTTDFTPSGAIGRCNTYR+S R R+ P KAL +L++ RV +
Sbjct: 241 EESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISARPRNGPSLFKALEYLRKLRVPVL 300
Query: 2959 -EHPKTKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVF 2783
E P LRV++EP FG+ M D F + Y++ ISFKI+FLVN+VMH+ IINQHQ +EK F
Sbjct: 301 DESPGRTLRVQDEPDFGMPMSDPFFCLQYKEGISFKIMFLVNAVMHKGIINQHQMSEKFF 360
Query: 2782 DLLRSQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRR 2603
DLLRSQPEE+N+ ALKH+CSY+ P+YD L+ VQKWLLNNPKL+E+P E +D +EVRR
Sbjct: 361 DLLRSQPEELNIVALKHMCSYKRPVYDAIKALDFVQKWLLNNPKLLERPREMDDVVEVRR 420
Query: 2602 LVITPSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKD 2423
L+ITPSKAYCLPPEVELSNRVLR+Y+ ++DRFLRVTFMDE M+ LN NVL +Y +PIV+D
Sbjct: 421 LIITPSKAYCLPPEVELSNRVLRNYKNIADRFLRVTFMDEAMQTLNKNVLMYYASPIVRD 480
Query: 2422 ITSSHIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQI 2243
ITS+ Q+T MF+RVK+IL GFYL GRKY FLAFSANQLRDRSAWFFAED I
Sbjct: 481 ITSNSNPQRTNMFKRVKDILVNGFYLCGRKYTFLAFSANQLRDRSAWFFAEDKNTGVANI 540
Query: 2242 LSWMGKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSP 2063
SWMGKF+ RN+AKCAARMGQCFSSTYAT+EVP +V+ + D++RN Y FSDGIG +S
Sbjct: 541 KSWMGKFTQRNVAKCAARMGQCFSSTYATIEVPLTKVNSQFPDVERNGYVFSDGIGMISA 600
Query: 2062 ELALEVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTIL 1883
+LA+EVAEKLQL N PCAYQIRYAG KGVV WP K D ++L LR SM KFES H L
Sbjct: 601 DLAIEVAEKLQLGSNPPCAYQIRYAGYKGVVARWP-AKDDGVRLYLRRSMKKFESNHKTL 659
Query: 1882 EICSWTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASC 1703
EICSWTR QPGFLNRQI+TLLSALEV+DDIFW MQ MV L+ ML D+D AFDV+TASC
Sbjct: 660 EICSWTRFQPGFLNRQIVTLLSALEVQDDIFWRMQETMVSRLDWMLEDSDTAFDVLTASC 719
Query: 1702 AESGNTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKS---RIFVQEGRWLMGCFD 1532
+ GNTA++ML+AGF+PQTEPHLRGML+SIR AQL DL E++ RIFV GRWLMGC D
Sbjct: 720 TDQGNTAALMLSAGFRPQTEPHLRGMLTSIRAAQLGDLSERATIARIFVPLGRWLMGCLD 779
Query: 1531 ELAVLEQGQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVL 1352
EL LE GQCFIQVSNPSIE+CF KHGS+F ETK+ L V+ G V IAKNPCLHPGDVR+L
Sbjct: 780 ELGKLEHGQCFIQVSNPSIEDCFVKHGSQFSETKKKLQVVTGLVAIAKNPCLHPGDVRIL 839
Query: 1351 KAVNVPGLEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEY 1172
+AV+VP L HL DCL+FPQKGDRPHT+EASGSDLDGDLYFVTWDE+LIPPSKRSW PMEY
Sbjct: 840 EAVDVPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWTPMEY 899
Query: 1171 TAAEAKELPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELA 992
E K+LPR+V+H+DIIDFFTKNMVN+SLG ICNAHVVH+D+SEYGALDEKC KLAELA
Sbjct: 900 APGEVKQLPREVKHSDIIDFFTKNMVNESLGAICNAHVVHADLSEYGALDEKCIKLAELA 959
Query: 991 ATAVDFPKTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTS 812
ATAVDFPKTGKIVNMP L+PK YPDFMGKE FQSY S KILGKLYR+IK+ +D D S
Sbjct: 960 ATAVDFPKTGKIVNMPAELKPKTYPDFMGKEEFQSYNSSKILGKLYRKIKDAYDRDHEAS 1019
Query: 811 PELEIDPSHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIW 632
E I YD+DLE+ + F+ DAW CK SYD QL GLLGQYKV REEE+VTGHIW
Sbjct: 1020 REHTFASDDIIYDQDLEVTGSTGFIGDAWNCKCSYDGQLIGLLGQYKVNREEEVVTGHIW 1079
Query: 631 SMPKHGNKKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQ 452
SMPK+ +KKQGE+KER+KHAY+ LRK+FRKVF+ +GPEFDQ+ + E+N +YE+KASAWYQ
Sbjct: 1080 SMPKYSSKKQGELKERLKHAYSTLRKEFRKVFECMGPEFDQLWDDEKNIMYERKASAWYQ 1139
Query: 451 VTYHPDWVKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGR 272
VTY WVK++ +L D G+ + LSFAWIAADYLARIKI+R S KPIDSLGR
Sbjct: 1140 VTYKDSWVKKSKELHAVDDAGKSVMLSFAWIAADYLARIKIKRRMMENSISTKPIDSLGR 1199
Query: 271 YLADRM 254
YLAD++
Sbjct: 1200 YLADKI 1205
>ref|XP_022845194.1| RNA-dependent RNA polymerase 6 [Olea europaea var. sylvestris]
ref|XP_022845195.1| RNA-dependent RNA polymerase 6 [Olea europaea var. sylvestris]
ref|XP_022845196.1| RNA-dependent RNA polymerase 6 [Olea europaea var. sylvestris]
ref|XP_022845198.1| RNA-dependent RNA polymerase 6 [Olea europaea var. sylvestris]
Length = 1195
Score = 1649 bits (4270), Expect = 0.0
Identities = 797/1199 (66%), Positives = 962/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S +K M++TQ+ VGG ++ VTAKML+DY E GL+WRCRLK SSTPP++YP +E
Sbjct: 1 MASKGGEKDMVITQIGVGGFEDFVTAKMLMDYFEDNIGLVWRCRLKTSSTPPESYPSYEV 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D + +Q+ DY+KV+PHAFVH+ S S +AL+AA R EL+L LKV++GPEN +RMN
Sbjct: 61 DTESVQRKHDYEKVKPHAFVHFALSSSAMSALDAAGRNELILGKNLLKVSLGPENPHRMN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
+ RR P +LSNV +E+GL+ +D+F VGWRG GVDFL+DPF+ +CK LFTKET FS
Sbjct: 121 ERRRTIPPIKLSNVCVEIGLMRGQDDFLVGWRGPRDGVDFLVDPFNATCKLLFTKETVFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
FKG VIKCN+KVEFL R++N IK Y + +L+ QL + P+++YRTADDDI +
Sbjct: 181 FKGESKNTVIKCNFKVEFLPREINEIKRYRDFSSLIILLQLASSPIVYYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPKT 2945
P + LDDDDPWIRTTDFTPSGAIGRCN YR+S+R R+ P+ KALA+L+E R+ + +
Sbjct: 241 PFDLLDDDDPWIRTTDFTPSGAIGRCNIYRISVRPRNGPRFDKALAYLQEHRIPVLNDSP 300
Query: 2944 KLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRSQ 2765
+ RV +EP FG+ + D F I Y++ I+FK+LFLVN++MH+ IINQHQ ++K F LLR +
Sbjct: 301 EPRVRDEPDFGVPLPDPFFCIQYKEGITFKVLFLVNAIMHKGIINQHQMSDKFFHLLRIR 360
Query: 2764 PEEVNVAALKHICSYRHPL-YDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVITP 2588
PE VN+ ALKHI S +H YD L VQKWLL NPKL+E P E +D +EVRRL+ITP
Sbjct: 361 PERVNLVALKHIWSLKHHTWYDACKNLVFVQKWLLKNPKLLEGPQELDDIVEVRRLIITP 420
Query: 2587 SKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSSH 2408
+KAYCLPPEVELSNRVLR+Y+ V+DRFLRVTFMDEGM+KLN NVL +YP+ I++DITS
Sbjct: 421 AKAYCLPPEVELSNRVLRNYKNVADRFLRVTFMDEGMRKLNKNVLTYYPSGILRDITSDS 480
Query: 2407 IAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWMG 2228
Q+T+MF+RVK+ILS GFYL GR+Y FLA+SANQLRD SAWFFAE+ V I+SWMG
Sbjct: 481 NPQRTSMFKRVKDILSNGFYLCGRRYSFLAYSANQLRDSSAWFFAENETVVVPSIMSWMG 540
Query: 2227 KFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELALE 2048
+F+NRN+AKCAARMGQCFSSTYATVEVP EVD EL DI+RN Y FSDGIGK+SP+LA+
Sbjct: 541 RFTNRNVAKCAARMGQCFSSTYATVEVPAAEVDPELPDIQRNGYDFSDGIGKISPDLAMR 600
Query: 2047 VAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICSW 1868
VAEKLQLT N PCAYQIRYAGCKGVV WP + + I L LRPSM KFES HTILEICSW
Sbjct: 601 VAEKLQLTVNPPCAYQIRYAGCKGVVACWP-AENNGIHLYLRPSMKKFESNHTILEICSW 659
Query: 1867 TRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESGN 1688
TR QPGFLNRQIITLLSAL+VKDDIFW MQ MV L++MLVDTD AFD++TASCAE GN
Sbjct: 660 TRFQPGFLNRQIITLLSALDVKDDIFWKMQEIMVSRLDRMLVDTDTAFDILTASCAEQGN 719
Query: 1687 TASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQG 1508
TA+IML+AGF+PQ+EPHL GML+SIR AQL DLRE++RIFV GRWLMGC DEL +L QG
Sbjct: 720 TAAIMLSAGFRPQSEPHLCGMLTSIRAAQLGDLRERARIFVPSGRWLMGCLDELGILRQG 779
Query: 1507 QCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPGL 1328
QCFIQVSNPS+E+CF KHGS+F ET +NL VI+G V IAKNPCLHPGDVR+L+AV++PGL
Sbjct: 780 QCFIQVSNPSLEDCFVKHGSKFSETNKNLRVIKGLVAIAKNPCLHPGDVRILEAVDIPGL 839
Query: 1327 EHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKEL 1148
+HL DCL+FPQ GDRPHT+EASGSDLDGDLYFVTWDE+LIPPSK+SW PMEY+ E K L
Sbjct: 840 KHLYDCLVFPQNGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMEYSTGEVKTL 899
Query: 1147 PRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFPK 968
PRDV+H DIIDFF+KNMVN+SLG ICNAHVVH+D+SE GALD KC +LAELAATAVDFPK
Sbjct: 900 PRDVKHKDIIDFFSKNMVNESLGAICNAHVVHADLSESGALDLKCIRLAELAATAVDFPK 959
Query: 967 TGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDPS 788
TGKIV MP L+PKLYPDFMGKE FQSY+S KILGKLYR+IK+ +D D S L
Sbjct: 960 TGKIVTMPTVLKPKLYPDFMGKEEFQSYRSSKILGKLYRKIKDAYDEDYEGSSGLAFASK 1019
Query: 787 HIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGNK 608
IPYD+DLEI + +F DAW CK +YD QL+ LLGQYKV REEE+VTGHIWSMPK+ +K
Sbjct: 1020 EIPYDQDLEIPGSESFFADAWNCKCAYDGQLSCLLGQYKVNREEEVVTGHIWSMPKYSSK 1079
Query: 607 KQGEMKERIKHAYNALRKDFRKVFDHLG-PEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KQGE+KER+KHAYN+L+KDFRK+FD + +F+ +S+ E+N IYE+KASAWYQVTYHP W
Sbjct: 1080 KQGELKERLKHAYNSLKKDFRKIFDSMNDSDFNDLSDDEKNVIYERKASAWYQVTYHPKW 1139
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V+ K Q PD G+ + LSFAWIAADYLARIK R G +S KPID LGRYLAD++
Sbjct: 1140 VQ---KFQVPDGVGKTVMLSFAWIAADYLARIKFRCRGIKNVESNKPIDYLGRYLADKI 1195
>ref|XP_015885879.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
ref|XP_015885880.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
ref|XP_015885881.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
ref|XP_015885882.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
ref|XP_015885883.1| PREDICTED: RNA-dependent RNA polymerase 6 [Ziziphus jujuba]
Length = 1197
Score = 1646 bits (4262), Expect = 0.0
Identities = 785/1197 (65%), Positives = 979/1197 (81%), Gaps = 2/1197 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S N+K+M+VTQVS+GG D V AK L D+LE + GL++RCRLK SSTPP++YP++
Sbjct: 1 MGSKENEKQMVVTQVSLGGFDRHVRAKDLSDFLEDEIGLVYRCRLKTSSTPPESYPDYTI 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D I++ DDY KVEPHAFVH+ ++S + L+AA R EL+LN++ LKV++GPEN YR+N
Sbjct: 61 DTAAIERKDDYKKVEPHAFVHFALAESAKWILDAAGRCELILNDRPLKVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR TP +LS+V +++G L RD FF+ WRG GVDFL+DPFD +CKF FT++TAFS
Sbjct: 121 QRRRTTTPIKLSDVVVDIGTLVTRDQFFIAWRGPPYGVDFLVDPFDGTCKFCFTRDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDN--HLNLVFQLGTPPVIFYRTADDDIHITH 3125
FKG+ N+AVIKC++K+EFLVRD+N K+Y + +L L+ QL + P I+YRTADDDI +
Sbjct: 181 FKGSLNHAVIKCDFKMEFLVRDINEFKQYTDTSYLVLLLQLNSAPRIWYRTADDDIDDSV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPKT 2945
P + LDDDDPWIRTTDFTPSGAIGR N+YR+S+ R K KKA+++L+E+RV + +
Sbjct: 241 PYDMLDDDDPWIRTTDFTPSGAIGRSNSYRISVPPRHGAKLKKAISYLRERRVHHDSLRW 300
Query: 2944 KLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRSQ 2765
LR+++EP F + M D F IHY++DI F+ +FLVN+V+H+ I NQHQ ++ F+LLR+Q
Sbjct: 301 PLRIQKEPDFDMPMSDPFFCIHYKEDIDFETMFLVNAVIHKGIFNQHQISDGFFNLLRNQ 360
Query: 2764 PEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVITPS 2585
+EVNVAALKHI SY+ P++D RL++VQ+WLL +PKL +KP +D EVRRLVITP+
Sbjct: 361 MKEVNVAALKHISSYKRPVFDACRRLKVVQEWLLRDPKLFKKPKRLDDIAEVRRLVITPT 420
Query: 2584 KAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSSHI 2405
+AYCLPPEVELSNRVLR+Y+EV+DRFLRVTFMDEGM+ +N+NVL ++ A IV++ITS+
Sbjct: 421 RAYCLPPEVELSNRVLRNYKEVADRFLRVTFMDEGMQTINSNVLTYHVASIVREITSNSF 480
Query: 2404 AQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWMGK 2225
QKT +F+R+K+IL+ GFYL GRKY FLAFS+NQLRDRSAWFFAED + ++ SWMG+
Sbjct: 481 PQKTKVFQRIKSILTNGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKNINVFEVKSWMGR 540
Query: 2224 FSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELALEV 2045
F+NRN+AKCAARMG CFSSTYA+VEVP +V+ DIKRN YTFSDGIGK++P+LALEV
Sbjct: 541 FTNRNVAKCAARMGLCFSSTYASVEVPSTQVNRGFPDIKRNGYTFSDGIGKITPDLALEV 600
Query: 2044 AEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICSWT 1865
A+KL+L N PCAYQIRYAG KGVV W D +LSLRPSM+KF+S HTILEICSWT
Sbjct: 601 AQKLKLERNPPCAYQIRYAGFKGVVACWKPTDDDGARLSLRPSMDKFQSNHTILEICSWT 660
Query: 1864 RLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESGNT 1685
R QPGFLNRQI+TLLSAL V D+IFW+MQ M+ LNQML+DTD+AFDV+TASCAE GN
Sbjct: 661 RFQPGFLNRQIVTLLSALNVSDEIFWNMQETMIFKLNQMLIDTDIAFDVLTASCAEQGNV 720
Query: 1684 ASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQGQ 1505
A+IML+AGF PQ EPHLRGML+ IR AQL LREK+RIFV GRWLMGC DEL VLEQGQ
Sbjct: 721 AAIMLSAGFSPQKEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780
Query: 1504 CFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPGLE 1325
CFIQVSNPS+ENCF+KHGSRF E NL VI+G+VVIAKNPCLHPGDVR+L+AV+VP L
Sbjct: 781 CFIQVSNPSLENCFSKHGSRFNERNDNLEVIKGFVVIAKNPCLHPGDVRILEAVDVPDLH 840
Query: 1324 HLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKELP 1145
HL DCL+FPQKG+RPHT+EASGSDLDGDLYFVTWDE+LIPPSK+SW PM+Y AAE K+L
Sbjct: 841 HLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMQYDAAETKQLT 900
Query: 1144 RDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFPKT 965
R V DII+FF+KNMVN++LGTICNAHVVH+D+SE+GALDEKC KLA+LAATAVDFPKT
Sbjct: 901 RPVTQEDIIEFFSKNMVNENLGTICNAHVVHADLSEHGALDEKCLKLADLAATAVDFPKT 960
Query: 964 GKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDPSH 785
GKIV MP +L+PKLYPDFMGK+ +QSYKS KILGKLYR+IK+ +D D T S E+ PS
Sbjct: 961 GKIVTMPFNLKPKLYPDFMGKDEYQSYKSNKILGKLYRKIKDAYDEDVTASSEINFLPSD 1020
Query: 784 IPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGNKK 605
IPYD DLE++ A +F+ DAW K SYD QLNGLLGQYKV REEE+VTGHIWSMPK+ ++K
Sbjct: 1021 IPYDIDLEVSGASDFIVDAWEQKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSSRK 1080
Query: 604 QGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDWVK 425
QGE+KER+KH+Y+AL+K+FR++F+ + +F+++S+ E+N IYE+KASAWYQVTYHP+WVK
Sbjct: 1081 QGELKERLKHSYSALKKEFRQIFEKMEEKFEELSDDEKNIIYEQKASAWYQVTYHPEWVK 1140
Query: 424 QALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
++L LQEPD + LSFAWIAADYL RIKIR G G KPI++LG+YL+DRM
Sbjct: 1141 KSLDLQEPDGSRYAVMLSFAWIAADYLTRIKIRCRGVGNVDCDKPINALGKYLSDRM 1197
>gb|PIN21599.1| RNA-directed RNA polymerase QDE-1 [Handroanthus impetiginosus]
Length = 1204
Score = 1644 bits (4258), Expect = 0.0
Identities = 796/1199 (66%), Positives = 968/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ +D +IVTQ+SVGG++ VTAKMLLDY E GL+WRCRLK SSTPPD+YP +E
Sbjct: 8 MGSEISDTDLIVTQISVGGLEKFVTAKMLLDYFEDNVGLVWRCRLKTSSTPPDSYPNYEI 67
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +R+Q+ ++Y KVEPHAFVH+ + S +ALEAA RG+L+L + LKV++GP+N +R+N
Sbjct: 68 DTERVQRKNEYVKVEPHAFVHFAVAGSANSALEAAGRGDLILG-RPLKVSLGPQNPHRLN 126
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
+ RR TP++LS+V +E+G++ + D F VGW G GVDFL+DPF+ +CK FTK+TAFS
Sbjct: 127 ERRRTTTPYKLSDVFVEIGVMRSPDEFIVGWSGPRRGVDFLVDPFNGTCKLHFTKDTAFS 186
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
FKG AVI CN+ +EFL R++N IK Y + +LV QL + P+++YRTADDDI +
Sbjct: 187 FKGEARPAVINCNFMIEFLPREINEIKHYKDFTSLVVIVQLASSPLVYYRTADDDIEESV 246
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEH--P 2951
P + LDDDDPWIRTTDFTPSGAIGRCNTYR+S+R R+ KAL +L+ +RV + P
Sbjct: 247 PFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRNGSHLSKALGYLRNRRVTVLDGCP 306
Query: 2950 KTKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
+ +L+V +EP FG+ M D F I Y++ ISFKI+FLVN+VMH+ IINQHQ +EK FDLLR
Sbjct: 307 RQQLQVRDEPDFGMPMSDPFFCIQYKEGISFKIMFLVNAVMHKGIINQHQMSEKFFDLLR 366
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
SQPEE+ ALK + S++HP+ D F L+ +Q+WLLNNPK++E+P E +D +EVRRL+IT
Sbjct: 367 SQPEELTTVALKRMYSFKHPVDDAFKALKNLQQWLLNNPKILERPREMDDIVEVRRLIIT 426
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPPEVELSNRVLR+YR ++DRFLRVTFMDE M+ LN NVL ++ PIV+DITS+
Sbjct: 427 PAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMQTLNKNVLTYFVTPIVRDITSN 486
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+TTMF+RVK+IL+ GFYL GRKY FLAFSANQLRDRSAWFFAED + I SWM
Sbjct: 487 SGPQRTTMFKRVKDILTNGFYLCGRKYSFLAFSANQLRDRSAWFFAEDKNIGVATIKSWM 546
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
GKF+NRN+AKCAARMGQCFSSTYATVEVP EV+ +L DI+RN+Y FSDGIG +S +LA+
Sbjct: 547 GKFTNRNVAKCAARMGQCFSSTYATVEVPSTEVNSKLPDIERNDYVFSDGIGMISADLAM 606
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKLQL+ PCAYQIRYAG KGVV WP K D +L LRPSM KFES HTILEICS
Sbjct: 607 EVAEKLQLSTKPPCAYQIRYAGYKGVVAGWP-AKNDGFRLYLRPSMKKFESNHTILEICS 665
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQIITLLSAL+V+DDIFW MQ MV L+QML DTD+AFDV+TASC + G
Sbjct: 666 WTRFQPGFLNRQIITLLSALDVQDDIFWRMQETMVSRLDQMLEDTDMAFDVLTASCTDQG 725
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA+IML+AGFKPQTEPHLRGML+SIR AQL DLREK+RIFV GRWLMGC DEL VLE
Sbjct: 726 NTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLADLREKARIFVPNGRWLMGCLDELGVLES 785
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVSNPS+E+CF KHGS F E+++ L VI+G V IAKNPCLHPGDVR+L+AV+VPG
Sbjct: 786 GQCFIQVSNPSLEDCFVKHGSHFSESEKRLQVIKGLVAIAKNPCLHPGDVRILEAVDVPG 845
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCLIFPQKG+RPHT+EASGSDLDGDLYFVTWDE+L+PPSKRSW PMEY E K+
Sbjct: 846 LHHLYDCLIFPQKGERPHTNEASGSDLDGDLYFVTWDENLLPPSKRSWTPMEYAPGEIKQ 905
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
LPR+V+H+DII+FF KNMVN+SLG ICNAHVVH+D+SEYGALDEKC KLAELAATAVDFP
Sbjct: 906 LPREVKHSDIIEFFAKNMVNESLGAICNAHVVHADLSEYGALDEKCIKLAELAATAVDFP 965
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGKIV+MP L+PK+YPDFMGKE FQ+Y S KILGKLYR++++ +D D S +
Sbjct: 966 KTGKIVSMPADLKPKMYPDFMGKEEFQTYNSSKILGKLYRKVRDAYDKDYEASSQHAFAW 1025
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
YD DLEI + +F+ DAW CK SYD QL GLLGQYKV REEE+VTGHIWSMPK+ +
Sbjct: 1026 ESSTYDGDLEIPGSTSFITDAWDCKCSYDGQLIGLLGQYKVNREEEVVTGHIWSMPKYKS 1085
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAY+ LRKDFRKVF+ + PEFDQ+S+ E+N +YE+KASAWY VTYH +
Sbjct: 1086 KKQGELKERLKHAYSTLRKDFRKVFECMDPEFDQLSDDEKNILYERKASAWYHVTYHESY 1145
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
VK++ +LQ D G+ + LSFAWIAADYLARIKIR S KPIDSLGRYLAD++
Sbjct: 1146 VKKSKELQLLDDSGKTVMLSFAWIAADYLARIKIRHRRMENDISTKPIDSLGRYLADKI 1204
>ref|XP_019260524.1| PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana attenuata]
gb|OIT39130.1| rna-dependent rna polymerase 6 [Nicotiana attenuata]
Length = 1197
Score = 1634 bits (4232), Expect = 0.0
Identities = 791/1199 (65%), Positives = 968/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K ++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK SSTPPD+YP F+
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +R+Q++ DY+KV PHAFVH+ S+S + AL AA EL+L K L V++GPEN YR+N
Sbjct: 61 DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PF+ S+V +E+G+L ++D+F VGWRG +GVDFL+DPF+ +CK LFTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EFLVR++N IK+ + +LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV +EP FG+ M D F E ISFK++FLVN+V+H+ I+NQHQ T + F LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S EEVN+AALKH+ SY+ P+ D +L ++KWLL NPKL+E+ E +D +EVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA+IML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VPG
Sbjct: 779 GQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
+ R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 MGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ DT+ S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
+ IPYD LEI + F+ DAW K SYD QL+GLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 NDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTY+P W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARIKIR G Y S KPI+SLGRYL D++
Sbjct: 1139 VARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gb|PNS92354.1| hypothetical protein POPTR_018G028100v3 [Populus trichocarpa]
Length = 1200
Score = 1634 bits (4232), Expect = 0.0
Identities = 781/1201 (65%), Positives = 970/1201 (80%), Gaps = 6/1201 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFE- 3662
M+++ + K+ +VTQVSVGG D VTAK LL+YL+ GL+WRCRLK S TPP++YP FE
Sbjct: 1 MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 3661 ADLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRM 3482
D+ +I++ +DY +V PHAFVH+ S A+ A+ R EL LNNK LKV++GP+N + +
Sbjct: 61 TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120
Query: 3481 NQLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAF 3302
NQ RR TPF+LS+VG E+G L +RD FFVGWRG SGVDFL+DPFD +CKF F++ TAF
Sbjct: 121 NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180
Query: 3301 SFKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNH--LNLVFQLGTPPVIFYRTADDDIHIT 3128
S K T +AVIKC++KVEFLVRD+N I +Y L L+ QL + P ++YRTADDDI
Sbjct: 181 SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240
Query: 3127 HPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVII---E 2957
P + LDDDDPWIRTTDFT SGAIGRC++YRVSI R K +KA+ +LKE+RV + E
Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300
Query: 2956 HPKTKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDL 2777
+ + ++R+ +EP FG+ M D F IH+++ I+F++LFLVN+VMH+ I NQHQ + FDL
Sbjct: 301 NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360
Query: 2776 LRSQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLV 2597
LR+Q EVNV+ALKHIC+YR P+++ + RL+ VQ+WLL NP L + P + D +E+RRLV
Sbjct: 361 LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420
Query: 2596 ITPSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDIT 2417
ITP+KAYCLPPEVELSNRVLR Y++V+DRFLRVTFMDEG++++N+NVLN+Y APIV+DIT
Sbjct: 421 ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480
Query: 2416 SSHIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILS 2237
S+ QKT +F+RV++IL++GFYL GR+Y FLAFSANQLRD+SAWFF+E+ ++ + S
Sbjct: 481 SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540
Query: 2236 WMGKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPEL 2057
WMGKF+NRNIAKCAARMGQCFSSTYAT+EVP EV+ +L DI+RN Y FSDGIG ++P+L
Sbjct: 541 WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600
Query: 2056 ALEVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEI 1877
A EVAEKL+L + PCAYQIRYAGCKGVV WP K GD ++LSLRPSMNKF+S HT LEI
Sbjct: 601 AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGK-GDGVRLSLRPSMNKFQSNHTTLEI 659
Query: 1876 CSWTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAE 1697
CSWTR QPGFLNRQIITLLS L V D +FW MQ MV LNQM V++DVAFDV+TASCA+
Sbjct: 660 CSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCAD 719
Query: 1696 SGNTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVL 1517
GN A+IML+AGFKP EPHLRGML+ +R AQL DLREK+RIFV GRWLMGC DEL +L
Sbjct: 720 QGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGML 779
Query: 1516 EQGQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNV 1337
EQGQCFIQVSN S+E CF KHG++F E ++NL VI+G VVIAKNPCLHPGDVRVL+AV+V
Sbjct: 780 EQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDV 839
Query: 1336 PGLEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEA 1157
PGL HL DCL+FPQKG+RPHT+EASGSDLDGDLYFVTWDE+LIPPSKRSW PM+Y AAEA
Sbjct: 840 PGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEA 899
Query: 1156 KELPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVD 977
K L R V H DII+FF KNMVND+LG ICNAHVVH+D+SEYGA D+ C LAELAATAVD
Sbjct: 900 KLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVD 959
Query: 976 FPKTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEI 797
FPKTGK+V+MP L+PK+YPDFMGKE +QSYKSEKILG+LYRQIK+ +D D S EL +
Sbjct: 960 FPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNL 1019
Query: 796 DPSHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKH 617
P IPYD DLE+ A +++ DAW K SYD QLNGLL QYKV REEE+VTGHIWSMPK+
Sbjct: 1020 VPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKY 1079
Query: 616 GNKKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHP 437
++KQGE+K+R+KH+YN+L+K+FR++F+ + EF+Q+ + E+N++YE+KASAWYQV YHP
Sbjct: 1080 SSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHP 1139
Query: 436 DWVKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADR 257
WVK++L+LQ+PD G + LSFAWIAADYLARIKIR G S KP++SL +YLADR
Sbjct: 1140 HWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADR 1199
Query: 256 M 254
M
Sbjct: 1200 M 1200
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 1634 bits (4230), Expect = 0.0
Identities = 791/1199 (65%), Positives = 967/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K ++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK SSTPPD+YP F+
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +R+Q++ DY+KV PHAFVH+ S+S + AL AA EL+L K L V++GPEN YR+N
Sbjct: 61 DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PF+ S+V +E+G+L ++D+F VGWRG +GVDFL+DPF+ +CK LFTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EFLVR++N IK+ + +LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV +EP FG+ M D F E ISFK++FLVN+V+H+ I+NQHQ T + F LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S EEVN+AALKH+ SY+ P+ D +L ++KWLL NPKL+E+ E +D +EVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA+IML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VPG
Sbjct: 779 GQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
+ R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 MGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ DT+ S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
+ IPYD LEI + F+ DAW K SYD QL+GLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 NDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTY+P W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARIKIR G Y S KPI+SLGRYL D +
Sbjct: 1139 VARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1633 bits (4229), Expect = 0.0
Identities = 794/1201 (66%), Positives = 969/1201 (80%), Gaps = 6/1201 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M+S+ ++K M+VTQ+S+GG D VTA L YLE G + RCRLK SSTPP++YP+FE
Sbjct: 1 MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60
Query: 3658 -DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRM 3482
D +I++ +DY KVEPHAFVH+V ++ AL+AA + EL L+ K LKV++GPE + +
Sbjct: 61 IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120
Query: 3481 NQLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAF 3302
NQ RR PF+ +V LE+G+L +RD +F GWRG SGVDFL+DPFD +CKFLFTK+TAF
Sbjct: 121 NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180
Query: 3301 SFKGTRNYAVIKCNYKVEFLVRDVNVIKEYDN--HLNLVFQLGTPPVIFYRTADDDIHIT 3128
SFKG +AVIKCN+KVEFLVR++N +++ + L L+ QL + P ++YRTADDDI T
Sbjct: 181 SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240
Query: 3127 HPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVII--EH 2954
P + LDDDDPWIRTTDFT SGAIGRCN+YR+SI R K KKA+ +L+ +RV + +
Sbjct: 241 VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300
Query: 2953 PKTKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLL 2774
PK +LRV +EP FG+ M D F I +++ I F+++FLVN+VMH+ IINQHQ ++K FDLL
Sbjct: 301 PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360
Query: 2773 RSQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVI 2594
RSQ +++N+AALKHICSYRHP++D + RL++V KWLL NPKL++ P E +D +EVRRLVI
Sbjct: 361 RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420
Query: 2593 TPSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITS 2414
TPSKAYCLPPEVELSNRVLR+Y+EVSDRFLRVTFMDEGM+ +N NVLN+Y APIVK ITS
Sbjct: 421 TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480
Query: 2413 SHIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSW 2234
+ QKT +F+RVK IL+ GFYL GRKY FLAFS+NQLRDRSAWFFAED K + + I SW
Sbjct: 481 NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540
Query: 2233 MGKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELA 2054
MGKF+NRN+AKCAARMGQCFSSTYATVEVP EV EL DIKRN Y FSDGIGK+ P+LA
Sbjct: 541 MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599
Query: 2053 LEVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEIC 1874
+EVAEKL+L + P AYQIRYAGCKGVV WP D I+LS RPSMNKF S+HTILEIC
Sbjct: 600 MEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDN-DGIRLSWRPSMNKFLSDHTILEIC 657
Query: 1873 SWTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAES 1694
SWTR QPGFLNRQI+TLLSAL V D IFW MQ M+ LNQML DTDVAFDV+ ASCAE
Sbjct: 658 SWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQ 717
Query: 1693 GNTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLE 1514
GNTA+IML+AGFKPQTEPHL+GML+ IR AQ LREK+RIFV GRWLMGC DEL VLE
Sbjct: 718 GNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLE 777
Query: 1513 QGQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVP 1334
QGQCFIQVS+PS+ENCF KHGSRF ++NL VI+G V IAKNPCLHPGDVR+L+AV+ P
Sbjct: 778 QGQCFIQVSSPSLENCFLKHGSRF-SAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAP 836
Query: 1333 GLEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAK 1154
GLEHLVDCL+FPQKGDRPH++EASGSDLDGDLYFVTW+E LIPPSK+SWPPM+Y +AEAK
Sbjct: 837 GLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAK 896
Query: 1153 ELPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDF 974
L R+V DIIDFFTKNMVN++LG ICNAHVVH+D SEYGALDE C LAE AATAVDF
Sbjct: 897 ALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDF 956
Query: 973 PKTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEID 794
PKTGK+V +P L+PK+YPDFMGKE FQ+Y+S KILGK+YRQIK+ ++ D + S E
Sbjct: 957 PKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFG 1016
Query: 793 PSHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHG 614
+P+D+DL I + +F+ DAW K SYD QLNGLLGQYKV REEE+VTGH+WSMPK+
Sbjct: 1017 ADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYK 1076
Query: 613 NKKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPD 434
++KQGE+ ER+KHAY++L+K+FR++F+ + +FDQ+++ E+N +YE+KASAWYQVTYHP
Sbjct: 1077 SRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPT 1136
Query: 433 WVKQALKLQEPD-TEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADR 257
WVK++L+LQ PD GE + LSFAWI ADYLARIKIRR G G S KPI+SL R+L DR
Sbjct: 1137 WVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDR 1196
Query: 256 M 254
+
Sbjct: 1197 I 1197
>ref|XP_021276585.1| RNA-dependent RNA polymerase 6 [Herrania umbratica]
Length = 1197
Score = 1632 bits (4227), Expect = 0.0
Identities = 785/1198 (65%), Positives = 965/1198 (80%), Gaps = 3/1198 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M+S ++K +VTQVSVGG VTAK L++YL+ + G++WRCRLK S TPP++YP FE
Sbjct: 1 MESKGSEKDTVVTQVSVGGFGRHVTAKDLMEYLDNEVGVVWRCRLKTSWTPPESYPNFEI 60
Query: 3658 -DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRM 3482
D IQ+ DDY KVEPHAFVH+ +V A++AA R ELV NN+ LKV++GPEN Y +
Sbjct: 61 LDSTVIQRTDDYKKVEPHAFVHFASPLTVTWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120
Query: 3481 NQLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAF 3302
N+ RR TPF+LS+V L++G + ++D FFVGWRG GVDFL+DPFD +CKF F+++TAF
Sbjct: 121 NRRRRNTTPFKLSDVCLDIGGMVSQDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180
Query: 3301 SFKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLV--FQLGTPPVIFYRTADDDIHIT 3128
SFKGT YAVIKC++KVEFLVRD+N IK+Y LV QL + P ++YRTADD+I +
Sbjct: 181 SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPWVWYRTADDEIEES 240
Query: 3127 HPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPK 2948
P + LDDDD WIRTTDFTPSGAIGRCNTYRV IR R K KKAL +L+EQRV ++ +
Sbjct: 241 VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPPDYVR 300
Query: 2947 TKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRS 2768
LR+ +EP FG+ M D + I+Y++ I F+I+FLVN+VMH+ I QHQ +E F+LLR
Sbjct: 301 WPLRIRDEPDFGMSMSDPFYCINYKEGIPFEIMFLVNAVMHKGIFYQHQLSEDFFNLLRD 360
Query: 2767 QPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVITP 2588
QP EVNVAALKHI SYR P++D + RL+ V WLL NPKL + P + +D +E+RRLVITP
Sbjct: 361 QPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPKLFKSPKQLDDIVEIRRLVITP 420
Query: 2587 SKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSSH 2408
+KAYCL PEVELSNRVLR Y+EV+DRFLRVTFMDEGM+ +N NVL +Y A IV+D+TS+
Sbjct: 421 TKAYCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTS 480
Query: 2407 IAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWMG 2228
+QKT +F+RV++IL+ GFYL GRKY FLAFSANQLRDRSAWFFAEDGK + QIL WMG
Sbjct: 481 FSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDRSAWFFAEDGKTSVLQILRWMG 540
Query: 2227 KFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELALE 2048
KF+NRNIAKCAARMGQCFSSTYATVEVP EVD L DI+RN Y FSDGIGK++P+LA+E
Sbjct: 541 KFTNRNIAKCAARMGQCFSSTYATVEVPSTEVDPCLPDIERNGYLFSDGIGKITPDLAME 600
Query: 2047 VAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICSW 1868
VA+KL+L N PCAYQIRYAGCKGVV WP++ GD ++LSLRPSMNKF S HT LEICSW
Sbjct: 601 VAQKLKLDLNPPCAYQIRYAGCKGVVACWPEE-GDGVRLSLRPSMNKFCSNHTTLEICSW 659
Query: 1867 TRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESGN 1688
TR QPGFLNRQIITLLS L V DD+FW+MQ MV LN++LVD D AF+V+T+SCAE GN
Sbjct: 660 TRFQPGFLNRQIITLLSTLHVPDDVFWEMQNTMVSKLNKILVDADAAFEVLTSSCAEQGN 719
Query: 1687 TASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQG 1508
TA+IML+AGFKPQ EPHLRG+L+ +R +QL LREK+RIFV GRWLMG FDEL VLEQG
Sbjct: 720 TAAIMLSAGFKPQIEPHLRGILTCVRASQLSGLREKARIFVPSGRWLMGVFDELGVLEQG 779
Query: 1507 QCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPGL 1328
QCFIQV+NPS+ENCF KHGSRF ETK+N VI+G VVIAKNPCLHPGD+R+L+AV+ PGL
Sbjct: 780 QCFIQVANPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGL 839
Query: 1327 EHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKEL 1148
HL DCL+FPQKG+RPHT+EASGSDLDGDLYFVTW++ LIPP K+SWPPM+Y E K+L
Sbjct: 840 HHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGEPKQL 899
Query: 1147 PRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFPK 968
R+V H DIIDFF KNMVN+ LGTICNAHVVH+D+SEYGALDEKC LAELAATAVDFPK
Sbjct: 900 QREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPK 959
Query: 967 TGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDPS 788
TG+IV+MP +L+PKLYPDFMGKE +QSYKS KILG+LYR IK+ +D D + S ++ ++
Sbjct: 960 TGRIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDAYDEDLSESSKINLEAP 1019
Query: 787 HIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGNK 608
I YD DLEI + +++ DAW K SYD QL GLLGQYKV REEE+VTGHIWSMPK+ ++
Sbjct: 1020 DINYDTDLEITGSADYIDDAWVKKCSYDGQLIGLLGQYKVKREEEVVTGHIWSMPKYTSR 1079
Query: 607 KQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDWV 428
K G++KE++ H+Y ALRK+FR++F+ + E +Q++E ERNE+YE+KASAWYQVTYHP WV
Sbjct: 1080 KLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWV 1139
Query: 427 KQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
++ L+LQ+ D ++ LSFAWIAADYLARIKIR G G KP++SL +YLAD++
Sbjct: 1140 EKKLELQKSDDADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1632 bits (4226), Expect = 0.0
Identities = 789/1199 (65%), Positives = 966/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K+++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK SSTPPD+YP ++
Sbjct: 1 MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +R+Q++++Y+KV PHAFVH+ S+S + AL AA ELVL K L V++GPEN YR+N
Sbjct: 61 DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PF+ S+V +E+G+L ++ +F VGWRG +GVDFL+DPF+ +CK LFTK+T FS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EFLVR++N IK+ + ++LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV +EP FG+ M D F E ISFK+LFL N+V+H+ I+NQHQ + F LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S EEVN+AALKH+ SY+ P+ D +L +QKWLL NPKL+E+ E +D +EVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA++ML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHGS+F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VP
Sbjct: 779 GQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE++IPPSK+SW PM Y AE K+
Sbjct: 839 LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ D + S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
IPYD LEI + F+ DAW K SYD QLNGLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 KDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTYHP W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARIKIR G Y S KPI+SLGRYLAD++
Sbjct: 1139 VARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197
>ref|XP_016477231.1| PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1630 bits (4220), Expect = 0.0
Identities = 787/1199 (65%), Positives = 968/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K ++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK S+TPPD+YP ++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +R+ ++ DY+KV PHAFVH+ S+S + AL AA EL+L K L V++GPEN YR+N
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PFR S+V +E+G+L ++D+F VGWRG +GVDF +DPF+ +C+ LFTK+TAFS
Sbjct: 121 QRRRTTMPFRFSDVSVELGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACRILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EF+VR++N IK+ + +LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ +RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV +EP FG+ M D F E ISFK++FLVN+V+H+ I+NQHQ T + F LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S+ EEVN+AALKH+ SY+ P+ D +L +QKWLL NPKL+E+ E +D +EVRRLVIT
Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA++ML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VPG
Sbjct: 779 GQCFIQVSSPSLENCFIKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ DT+ S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
+ IPYD LEI + F+ DAW K SYD QL+GLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 NDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTY+P W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARIKIR G Y S KPI+SLGRYL D++
Sbjct: 1139 VARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>gb|KVH99831.1| RNA-dependent RNA polymerase, eukaryotic-type [Cynara cardunculus
var. scolymus]
Length = 1373
Score = 1630 bits (4220), Expect = 0.0
Identities = 810/1016 (79%), Positives = 886/1016 (87%), Gaps = 6/1016 (0%)
Frame = -3
Query: 3283 NYAVIKCNYKVEFLVRD-VNVIKEYDNHLNLVF-----QLGTPPVIFYRTADDDIHITHP 3122
+Y ++ + V F+ D VN E + LVF +L + P+I YRTADDDI ITH
Sbjct: 366 DYEKVEPHAFVHFVDXDSVNSXLEIEGKGELVFLNNPLKLVSAPLISYRTADDDIAITHX 425
Query: 3121 SETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPKTK 2942
SE LDD DPWIRTTDFTPSGAIGRC+TYRV IR RDV KAKKALAF +EQ V I+ +TK
Sbjct: 426 SEMLDDXDPWIRTTDFTPSGAIGRCHTYRVLIRXRDVXKAKKALAFXREQSVPIDQXRTK 485
Query: 2941 LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRSQP 2762
+V+ EP FGI ++ F I YE DISF +LFLVN+ +HR IINQHQF+EKVFDLLR Q
Sbjct: 486 XKVQNEPEFGIPLRXPFFCIQYEDDISFXVLFLVNACLHRGIINQHQFSEKVFDLLRDQS 545
Query: 2761 EEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVITPSK 2582
EVNVAALKHICS RHPLYDGFTRL+IVQ+WLLNNP LIEK +EQ D EVRRLVITPSK
Sbjct: 546 XEVNVAALKHICSXRHPLYDGFTRLKIVQEWLLNNPMLIEKKIEQKDITEVRRLVITPSK 605
Query: 2581 AYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSSHIA 2402
AYCLPPEVELSNRVLRHYR+VSDRFLRVTFMDEGM+ LNN+VLNFYPA IVK IA
Sbjct: 606 AYCLPPEVELSNRVLRHYRKVSDRFLRVTFMDEGMRTLNNHVLNFYPAXIVK----GSIA 661
Query: 2401 QKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWMGKF 2222
QKTTMFRRV NILS+GFYL GR Y FLAFSANQLRDRSAWFFAE+ K++C+ I +WMGKF
Sbjct: 662 QKTTMFRRVXNILSEGFYLCGRXYRFLAFSANQLRDRSAWFFAENXKISCRXIXAWMGKF 721
Query: 2221 SNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELALEVA 2042
SNRN+AKCAARMGQCFSSTYATVEVPR EVDL+L DIKRN Y FSDGIGKMSPELALEVA
Sbjct: 722 SNRNVAKCAARMGQCFSSTYATVEVPRTEVDLBLXDIKRNGYVFSDGIGKMSPELALEVA 781
Query: 2041 EKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICSWTR 1862
EKLQL DNQPCAYQIRYAGCKGV+VWWP KKGD+IKLSLRPSMNKFES HT+LEICSWTR
Sbjct: 782 EKLQLKDNQPCAYQIRYAGCKGVIVWWPGKKGDNIKLSLRPSMNKFESXHTVLEICSWTR 841
Query: 1861 LQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESGNTA 1682
LQPGFLNRQIITLLSAL V DDIFW+MQ KMV NL+QML DTD+AFDVIT SCAE G+ A
Sbjct: 842 LQPGFLNRQIITLLSALNVGDDIFWEMQTKMVRNLBQMLEDTDMAFDVITTSCAEXGSXA 901
Query: 1681 SIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQGQC 1502
SIMLAAGFKP TEPHLR MLSSIRVAQLEDLREKSRIFV EGRWLMGC DEL VLEQGQC
Sbjct: 902 SIMLAAGFKPTTEPHLRXMLSSIRVAQLEDLREKSRIFVPEGRWLMGCLDELGVLEQGQC 961
Query: 1501 FIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPGLEH 1322
+IQVSNPS+ENCF KHGSRF ETKRNLTVI+G VVIAKNPCLHPGDVRVL+AV+VPGLEH
Sbjct: 962 YIQVSNPSVENCFVKHGSRFSETKRNLTVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLEH 1021
Query: 1321 LVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKELPR 1142
L DCLIFPQKGDRPHTDEASGSDLDGDLYFVTWD +LIPPSK+SWPPMEYTAAEAK LPR
Sbjct: 1022 LFDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDXNLIPPSKQSWPPMEYTAAEAKLLPR 1081
Query: 1141 DVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFPKTG 962
D DIIDFFTKNMVNDSLGTICNAHVVH+DMS+ GAL++KC KLAELAATAVDFPKTG
Sbjct: 1082 D----DIIDFFTKNMVNDSLGTICNAHVVHADMSDDGALEKKCIKLAELAATAVDFPKTG 1137
Query: 961 KIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDPSHI 782
KIVNMP +LRPKLYPDFMGKE+FQSYKS+KILGKLYR +K+C TD T S EL I PS I
Sbjct: 1138 KIVNMPPALRPKLYPDFMGKESFQSYKSKKILGKLYRHVKDCRATDVTPSSELLILPSXI 1197
Query: 781 PYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGNKKQ 602
PYD+DLE+ EA +F+ DAWGCKLSYDR+LNGLLGQYKVAREEEIVTGHIWSMPKH +KKQ
Sbjct: 1198 PYDEDLEVREAASFVNDAWGCKLSYDRRLNGLLGQYKVAREEEIVTGHIWSMPKHASKKQ 1257
Query: 601 GEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDWVKQ 422
GE+KERIKHAY+ALRK+FRKVFD+LGP+FDQI E ERNE YE+KASAWYQVTYHP WV++
Sbjct: 1258 GELKERIKHAYSALRKEFRKVFDYLGPDFDQIPEEERNERYERKASAWYQVTYHPIWVRK 1317
Query: 421 ALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
+L LQEP EGE +NLSFAWIAADYLARIKI+R GAG G+SQKPIDSLGRYLADRM
Sbjct: 1318 SLALQEPGREGETVNLSFAWIAADYLARIKIKRRGAGDGRSQKPIDSLGRYLADRM 1373
Score = 423 bits (1087), Expect = e-122
Identities = 210/297 (70%), Positives = 244/297 (82%), Gaps = 1/297 (0%)
Frame = -3
Query: 3484 MNQLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETA 3305
MNQ RR + PF+ SNV LE+G+ ++RDNF VGWRG SGVDFLIDPFD SCKFLFTK+ A
Sbjct: 1 MNQRRRTKVPFKFSNVVLEIGMFASRDNFLVGWRGPASGVDFLIDPFDYSCKFLFTKDNA 60
Query: 3304 FSFKGTRNYAVIKCNYKVEFLVRDVNVIKE-YDNHLNLVFQLGTPPVIFYRTADDDIHIT 3128
FSFKGT+N+AVIKCN+KVEFL R+VN IK+ +H L+FQL + P+I YRTADDDI IT
Sbjct: 61 FSFKGTKNHAVIKCNFKVEFLAREVNDIKDCLQSHRVLIFQLVSAPLISYRTADDDIAIT 120
Query: 3127 HPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPK 2948
H SE LDD DPWIRTTDFTPSGAIGRC+TYRV IR RDV KAKKALAF +EQ V I+ +
Sbjct: 121 HSSEMLDDVDPWIRTTDFTPSGAIGRCHTYRVLIRSRDVRKAKKALAFFREQSVPIDQLR 180
Query: 2947 TKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRS 2768
TK +V+ EP FGI ++ F I YE DISF++LFLVN+ +HR IINQHQF+EKVFDLLR
Sbjct: 181 TKPKVQNEPEFGIPLRYPFFCIQYEDDISFRVLFLVNACLHRGIINQHQFSEKVFDLLRD 240
Query: 2767 QPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLV 2597
Q EVNVAALKHICS+RHPLYDGFTRL+IVQ+WLLNNP LIEK +EQ D EVRRL+
Sbjct: 241 QSVEVNVAALKHICSHRHPLYDGFTRLKIVQEWLLNNPMLIEKKIEQKDITEVRRLM 297
Score = 153 bits (387), Expect = 1e-33
Identities = 73/118 (61%), Positives = 89/118 (75%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M+++R+DK M +TQVSVGG + V AKMLLDYLE G +WRCR+K SSTPPDTYP F+A
Sbjct: 297 MEAERSDKDMEITQVSVGGFGDHVKAKMLLDYLEETVGRVWRCRVKASSTPPDTYPXFDA 356
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYR 3485
+L+ IQKVDDY+KVEPHAFVH+VD DSV + LE +GELV N LK+ P YR
Sbjct: 357 BLENIQKVDDYEKVEPHAFVHFVDXDSVNSXLEIEGKGELVFLNNPLKLVSAPLISYR 414
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 1629 bits (4219), Expect = 0.0
Identities = 789/1199 (65%), Positives = 963/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K ++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK S+TPPD+YP ++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D R+ ++ DY+KV PHAFVH+ S+S + AL AA L+L K L V++GPEN YR+N
Sbjct: 61 DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PF+ S+V +E+G+L ++D+F VGWRG +GVDF +DPF+ +CK LFTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EF+VR++N IK++ + +LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV +EP FG+ M D F E ISFK++FLVN+V+H+ I+NQHQ T + F LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S EEVN+AALKH+ SY+ P+ D +L +QKWLL NPKL+E+ E +D +EVRRLVIT
Sbjct: 360 SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LAL
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGILLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ LN+MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA+IML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VPG
Sbjct: 779 GQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ DT+ S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
+ IPYD LEI + F+ DAW CK SYD QL+GLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 NDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTY+P W
Sbjct: 1079 KKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARI IR G Y S KPI+SLGRYL D +
Sbjct: 1139 VARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>ref|XP_009758053.1| PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana sylvestris]
Length = 1197
Score = 1629 bits (4219), Expect = 0.0
Identities = 787/1199 (65%), Positives = 967/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K ++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK S+TPPD+YP ++
Sbjct: 1 MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +R+ ++ DY+KV PHAFVH+ S+S + AL AA EL+L K L V++GPEN YR+N
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PFR S+V +E+G+L ++D+F VGWRG +GVDF +DPF+ +C+ LFTK+TAFS
Sbjct: 121 QRRRTTMPFRFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACRILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EF+VR++N IK+ + +LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV +EP FG+ M D F E ISFK++FLVN+V+H+ I+NQHQ T + F LLR
Sbjct: 301 RKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S+ EEVN+AALKH+ SY+ P+ D +L +QKWL+ NPKL+E+ E +D +EVRRLVIT
Sbjct: 360 SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLMKNPKLLERTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA+IML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VPG
Sbjct: 779 GQCFIQVSSPSLENCFIKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ DT+ S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
+ IPYD LEI + F+ DAW K SYD QL+GLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 NDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTY+P W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARIKIR G Y S KPI+SLGRYL D++
Sbjct: 1139 VARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gb|PNT33711.1| hypothetical protein POPTR_006G253500v3 [Populus trichocarpa]
Length = 1198
Score = 1628 bits (4217), Expect = 0.0
Identities = 782/1199 (65%), Positives = 963/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFE- 3662
M+++ + K+ +VTQVS+GG D VTAK LL+YLE + GL+WRCRLK S TPP++YP FE
Sbjct: 1 METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60
Query: 3661 ADLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRM 3482
D+ +I + +DY +VEPHAFVH+ S A++AA R EL LNNK LK ++GPEN + +
Sbjct: 61 TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120
Query: 3481 NQLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAF 3302
NQ RRK TPF+LS VG+E+G L +RD FFVGWRG +GVDFL+DPFD +C+F F++ TAF
Sbjct: 121 NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180
Query: 3301 SFKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNH--LNLVFQLGTPPVIFYRTADDDIHIT 3128
SFK T +AVIKC++KVEFLVRD+N IK+Y L L+ QL + P ++YRTADDDI ++
Sbjct: 181 SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240
Query: 3127 HPSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRVIIEHPK 2948
P + LDDDDPWIRTTDFT SGAIGRC++YRVSI R PK +KA+ FLKE+RV E+ +
Sbjct: 241 VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300
Query: 2947 TKLRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLRS 2768
+R+ +EP FG+ M D F IH+++ I+F +LFLVN+VMH+ I NQHQ + FDLLR+
Sbjct: 301 RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360
Query: 2767 QPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVITP 2588
QP EVNVAALKHI YR P++D + +L++ Q+WLL NPK + + +D E+RRLVITP
Sbjct: 361 QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420
Query: 2587 SKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSSH 2408
+KAYCLPPEVELSNRVLR Y++V+DRFLRVTFMDEG++ +N+N LN++ APIV+ ITS
Sbjct: 421 TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480
Query: 2407 IAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWMG 2228
QKT +F+RV++IL++GFYL GR+Y FLAFS+NQLRDRSAWFFAED + I SWMG
Sbjct: 481 FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540
Query: 2227 KFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELALE 2048
KF+N+NIAKCAARMGQCFSSTYAT+EVP EV+ +L DIKRN Y FSDGIG ++P+LA E
Sbjct: 541 KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600
Query: 2047 VAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICSW 1868
VAEKL+ + PCAYQIRYAGCKGVV WP++ GD I+LSLR SMNKF+S HTILEICSW
Sbjct: 601 VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQ-GDGIRLSLRSSMNKFQSNHTILEICSW 659
Query: 1867 TRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESGN 1688
TR QPGFLNRQIITLLSAL V D +FW MQ MV LNQMLVD+DVAFDV+TASCAE GN
Sbjct: 660 TRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGN 719
Query: 1687 TASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQG 1508
A+IML+AGFKPQ EPHLRGML+ +R AQL LREK+RIFV GRWLMGC DEL VLEQG
Sbjct: 720 VAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQG 779
Query: 1507 QCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPGL 1328
QCFIQVSN +ENCF KHGS+F ETK+NL V++G VVIAKNPCLHPGD+R+L+AV+ PGL
Sbjct: 780 QCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGL 839
Query: 1327 EHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKEL 1148
HL DCL+FPQKG+RPH +EASGSDLDGDLYFVTWDE+LIPPSKRSW PM+Y AAEAK+L
Sbjct: 840 HHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQL 899
Query: 1147 PRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFPK 968
R V H DI++FF KNM N++LG ICNAHVV +D+SEYGALDEKC LAELAATAVDFPK
Sbjct: 900 TRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPK 959
Query: 967 TGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECF-DTDATTSPELEIDP 791
TGKIV+MP L+PK+YPDFMGKE QSYKS+KILG+LYRQIK+ + D D S EL
Sbjct: 960 TGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVR 1019
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
IPYD DLE+ A +F+ DAW K SYD QLNGLL QYKV REEE+VTGH+WSMPK +
Sbjct: 1020 GDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSS 1079
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
+KQG++KER+KH+YN L+++FR+VF+ + +F Q+ + E+N +YE+KASAWYQVTYHP W
Sbjct: 1080 RKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHW 1139
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
++++L+LQ+ D G + LSFAWIAADYLARIKIR + G S KP++SL +YLADRM
Sbjct: 1140 IQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|NP_001312583.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1622 bits (4199), Expect = 0.0
Identities = 784/1199 (65%), Positives = 964/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ ++K+++VTQ+S GG DN+V AKML +YLE + G +WRCRLK SSTPPD+YP ++
Sbjct: 1 MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +++Q++++Y+KV PHAFVH+ S+S + AL AA EL+L K L V++GPEN YR+N
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PF+ S+V +E+G+L ++D+F VGWRG +GVDF +DPF+ +CK LFTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLVF--QLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EF+VR++N IK+ + +LV QL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV++EP FG+ M D F E ISFK++FLVN+V+H+ I+NQHQ T + F LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S+ EEVN AALKH+ SY+ P+ D +L +QKWLL NPKL+++ E +D +EVRRLVIT
Sbjct: 360 SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA+IML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VP
Sbjct: 779 GQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ D + S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
IPYD LEI + F+ DAW K SYD QL+GLLGQYKV REEE+VTGHIWSMPK+
Sbjct: 1019 KDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTYHP W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ PD + LSFAWIAADYLARIKIR Y S KPI+SLGRYL D +
Sbjct: 1139 VARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1621 bits (4198), Expect = 0.0
Identities = 785/1199 (65%), Positives = 964/1199 (80%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3838 MDSDRNDKKMIVTQVSVGGIDNEVTAKMLLDYLEAKTGLIWRCRLKKSSTPPDTYPEFEA 3659
M S+ +K+++VTQ+SVGG DN+V AKML +YLE + G +WRCRLK SSTPPD+YP ++
Sbjct: 1 MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60
Query: 3658 DLDRIQKVDDYDKVEPHAFVHYVDSDSVRTALEAARRGELVLNNKTLKVNIGPENGYRMN 3479
D +++Q++++Y+KV PHAFVH+ S+S + AL AA EL+L K L V++GPEN YR+N
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 3478 QLRRKETPFRLSNVGLEVGLLSNRDNFFVGWRGADSGVDFLIDPFDRSCKFLFTKETAFS 3299
Q RR PF+ S+V +E+G+L ++D+F VGWRG +GVDFL+DPF+ +CK LFTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 3298 FKGTRNYAVIKCNYKVEFLVRDVNVIKEYDNHLNLV--FQLGTPPVIFYRTADDDIHITH 3125
F+G +A+IKCN+K+EFLVR++N IK+ + +LV FQL + P++FYRTADDDI +
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 3124 PSETLDDDDPWIRTTDFTPSGAIGRCNTYRVSIRIRDVPKAKKALAFLKEQRV-IIEHPK 2948
+ LDDDD WIRTTD T SGAIGRCNTYR+SIR R+ P +KA+A+ +RV ++E
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 2947 TK-LRVEEEPGFGILMQDALFSIHYEQDISFKILFLVNSVMHRCIINQHQFTEKVFDLLR 2771
K LRV++EP FG+ M D F E ISF++LFLVN+V+H+ I+NQHQ + F LLR
Sbjct: 301 RKMLRVKDEPDFGVSMSDPFFCFQNE-GISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359
Query: 2770 SQPEEVNVAALKHICSYRHPLYDGFTRLEIVQKWLLNNPKLIEKPLEQNDSIEVRRLVIT 2591
S EEVN AALKH+ SY+ P+ D +L +QKWLL NPKL+++ E +D +EVRRLVIT
Sbjct: 360 SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419
Query: 2590 PSKAYCLPPEVELSNRVLRHYREVSDRFLRVTFMDEGMKKLNNNVLNFYPAPIVKDITSS 2411
P+KAYCLPP VELSNRVLR+Y+ V+DRFLRVTFMDEGM+ LN NVL +Y A IV++ITS+
Sbjct: 420 PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479
Query: 2410 HIAQKTTMFRRVKNILSQGFYLSGRKYFFLAFSANQLRDRSAWFFAEDGKVTCKQILSWM 2231
Q+T +F+RVK+ILS+GF+L GRKY FLAFSANQLRDRSAWFFAED K+ I+SWM
Sbjct: 480 SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539
Query: 2230 GKFSNRNIAKCAARMGQCFSSTYATVEVPRHEVDLELKDIKRNNYTFSDGIGKMSPELAL 2051
G+FSNRN+AKCAARMGQCFSSTYATVEVP EV+ EL DI+RN Y FSDGIG +S +LA+
Sbjct: 540 GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599
Query: 2050 EVAEKLQLTDNQPCAYQIRYAGCKGVVVWWPDKKGDSIKLSLRPSMNKFESEHTILEICS 1871
EVAEKL L+ N P AYQIRYAGCKGVV WP K D I+LSLRPSM KF+S HTILEICS
Sbjct: 600 EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKN-DGIRLSLRPSMKKFDSNHTILEICS 658
Query: 1870 WTRLQPGFLNRQIITLLSALEVKDDIFWDMQMKMVMNLNQMLVDTDVAFDVITASCAESG 1691
WTR QPGFLNRQI+TLLS+L+VKD IFW+MQ +M+ L++MLVD+DVAFDVITASCAE+G
Sbjct: 659 WTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAG 718
Query: 1690 NTASIMLAAGFKPQTEPHLRGMLSSIRVAQLEDLREKSRIFVQEGRWLMGCFDELAVLEQ 1511
NTA++ML+AGFKPQ+EPHLRGMLSSIR +QL DLR K+RIFV GRWLMGC DEL LEQ
Sbjct: 719 NTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQ 778
Query: 1510 GQCFIQVSNPSIENCFAKHGSRFVETKRNLTVIEGYVVIAKNPCLHPGDVRVLKAVNVPG 1331
GQCFIQVS+PS+ENCF KHG +F + K+NL V++G VVIAKNPCLHPGDVR+L+AV+VP
Sbjct: 779 GQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPS 838
Query: 1330 LEHLVDCLIFPQKGDRPHTDEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMEYTAAEAKE 1151
L HL DCL+FPQKGDRPH++EASGSDLDGDLYFVTWDE+LIPPSK+SW PM Y AE K+
Sbjct: 839 LSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQ 898
Query: 1150 LPRDVRHTDIIDFFTKNMVNDSLGTICNAHVVHSDMSEYGALDEKCTKLAELAATAVDFP 971
L R V H DIIDFF+KNMV +SLG ICNAHVVH+D+SE+GALDEKC KLAELAA AVDFP
Sbjct: 899 LGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFP 958
Query: 970 KTGKIVNMPHSLRPKLYPDFMGKENFQSYKSEKILGKLYRQIKECFDTDATTSPELEIDP 791
KTGK+V MP L+PK+YPDFMGKE FQSYKS+KILGKLYRQ+K+ D + S LE+ P
Sbjct: 959 KTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVP 1018
Query: 790 SHIPYDKDLEINEAGNFLKDAWGCKLSYDRQLNGLLGQYKVAREEEIVTGHIWSMPKHGN 611
IPYD LEI + F+ DAW K SYD QLNGLLGQYKV REEE+VTG+IWSMPK+
Sbjct: 1019 KDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNA 1078
Query: 610 KKQGEMKERIKHAYNALRKDFRKVFDHLGPEFDQISEVERNEIYEKKASAWYQVTYHPDW 431
KKQGE+KER+KHAYN LRK+FR VF+ + P+FD + + E+N++YE+KASAWYQVTYHP W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138
Query: 430 VKQALKLQEPDTEGEMINLSFAWIAADYLARIKIRRTGAGYGKSQKPIDSLGRYLADRM 254
V ++L+LQ D + LSFAWIAADYLARIKIR Y S KPI+SLGRYL D +
Sbjct: 1139 VARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197