BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00019818
         (2162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023743973.1| RNA polymerase sigma factor sigA-like [Lactu...   546   0.0  
ref|XP_022006580.1| RNA polymerase sigma factor sigA-like [Helia...   545   0.0  
gb|KVI10078.1| RNA polymerase sigma-70 [Cynara cardunculus var. ...   529   e-179
gb|KVI04620.1| RNA polymerase sigma-70 [Cynara cardunculus var. ...   459   e-151
ref|XP_022038093.1| RNA polymerase sigma factor sigA-like [Helia...   439   e-143
gb|PLY90261.1| hypothetical protein LSAT_8X14040 [Lactuca sativa]     423   e-137
ref|XP_023757341.1| RNA polymerase sigma factor sigA-like [Lactu...   423   e-137
gb|KDO48035.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   402   e-130
ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA ...   404   e-130
ref|XP_022861587.1| RNA polymerase sigma factor sigA [Olea europ...   403   e-130
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA ...   402   e-129
gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   402   e-129
ref|XP_006437403.1| RNA polymerase sigma factor sigA [Citrus cle...   401   e-129
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...   398   e-128
ref|NP_001312542.1| RNA polymerase sigma factor sigA-like [Nicot...   400   e-128
ref|XP_009771934.1| PREDICTED: RNA polymerase sigma factor sigA ...   400   e-128
gb|PNS90427.1| hypothetical protein POPTR_019G043300v3 [Populus ...   398   e-128
gb|PNS90422.1| hypothetical protein POPTR_019G043300v3 [Populus ...   398   e-128
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   398   e-128
ref|XP_023877044.1| RNA polymerase sigma factor sigA isoform X1 ...   397   e-127

>ref|XP_023743973.1| RNA polymerase sigma factor sigA-like [Lactuca sativa]
 ref|XP_023743974.1| RNA polymerase sigma factor sigA-like [Lactuca sativa]
 gb|PLY66068.1| hypothetical protein LSAT_2X127081 [Lactuca sativa]
          Length = 498

 Score =  546 bits (1406), Expect = 0.0
 Identities = 288/419 (68%), Positives = 324/419 (77%), Gaps = 7/419 (1%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSRDTQ 1095
            VI LT GKR+L SSSYYS+VN+KLSCSSNLGF +VPTTN+I SKKS  Y+ ++  SRDT 
Sbjct: 7    VIGLTAGKRILCSSSYYSDVNEKLSCSSNLGFTYVPTTNLISSKKSPNYTHSITRSRDTS 66

Query: 1094 PIRAVKEHVDTTIDHPSTDHWVQTFDYFDEDV-------DAXXXXXXXXLEKQWXXXXXX 936
            P+RA+KEHVDTT+  P TD WVQ FD+ DE+V       DA        LEKQW      
Sbjct: 67   PVRALKEHVDTTVAPPITDKWVQGFDHLDEEVSEHDLPVDALLLLHKSLLEKQWTLSTDA 126

Query: 935  XXXXXXTSQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISPELLQNCQ 756
                   S+KVHVTGSG+SARRRR+N+QNK PTVN       G+KQLRSIISPEL+QNCQ
Sbjct: 127  PTKDKS-SRKVHVTGSGVSARRRRINAQNKKPTVNEDGGI--GNKQLRSIISPELVQNCQ 183

Query: 755  KGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAAALKISRV 576
            KGYLKG+KN+ LLTH+EVVALS+KIKIGL               EP+EKQLAA+LKISRV
Sbjct: 184  KGYLKGMKNETLLTHSEVVALSEKIKIGLHLEEEKSRLKERLGSEPSEKQLAASLKISRV 243

Query: 575  ELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXIEKYDSSR 396
            ELQ KQIEC+LAREKLALSN+ LVMSVA KY  MGA+               IEKYDSSR
Sbjct: 244  ELQAKQIECSLAREKLALSNVGLVMSVALKYKHMGADMSDLIQGGLIGLLRGIEKYDSSR 303

Query: 395  GFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGITPSIDRIA 216
            G KISTYVYWWIRQGVTRTFFEN +TLRLPTHLHERL AIRNAKAKLERKGITPSID+IA
Sbjct: 304  GHKISTYVYWWIRQGVTRTFFENSRTLRLPTHLHERLGAIRNAKAKLERKGITPSIDKIA 363

Query: 215  ETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTRHGIDEG 39
            ETLNMSRKKVTNATEAVCKV+SLDK AFPS+NG+PGETLHSYIADDCP+N+  HG+DEG
Sbjct: 364  ETLNMSRKKVTNATEAVCKVFSLDKEAFPSLNGLPGETLHSYIADDCPENDPWHGVDEG 422


>ref|XP_022006580.1| RNA polymerase sigma factor sigA-like [Helianthus annuus]
 gb|OTF99853.1| putative RNA polymerase sigma-F type, RNA polymerase sigma-70 like
            domain protein [Helianthus annuus]
          Length = 497

 Score =  545 bits (1403), Expect = 0.0
 Identities = 293/421 (69%), Positives = 325/421 (77%), Gaps = 7/421 (1%)
 Frame = -1

Query: 1280 NVVIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSRD 1101
            N V+ L  G+RLL SSSYYSEV++KLSCSSN+GFIFVPTT+ I+SKKS+ YS +LVN RD
Sbjct: 5    NAVVGLRAGERLLGSSSYYSEVSEKLSCSSNIGFIFVPTTSSIISKKSTNYSHSLVNKRD 64

Query: 1100 TQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDEDV-------DAXXXXXXXXLEKQWXXXX 942
            T P RAVKEHVDT +D  +TD WV  FDY DE+V       DA        LEKQW    
Sbjct: 65   THPTRAVKEHVDTALDSSTTDQWVHRFDYLDEEVSEHEFPVDALLLLHKSLLEKQWTLTT 124

Query: 941  XXXXXXXXTSQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISPELLQN 762
                     S+KV VTGSG+SARRRRLN+QNKT   N    ++GG+KQLRSIISPELLQ+
Sbjct: 125  EETITTEKKSKKV-VTGSGVSARRRRLNAQNKTLAKNC---QDGGNKQLRSIISPELLQS 180

Query: 761  CQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAAALKIS 582
             QK YLKGVKN+ALLTH+EVVALS+KIKIGLQ              EP+EKQLA  LKIS
Sbjct: 181  YQKAYLKGVKNEALLTHSEVVALSEKIKIGLQLEEEKSSLKERLGTEPSEKQLADFLKIS 240

Query: 581  RVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXIEKYDS 402
            +V+LQTKQ+ECTLAREKL LSNIRLVMSVAQKY  MGA+               IEKYDS
Sbjct: 241  QVDLQTKQMECTLAREKLTLSNIRLVMSVAQKYKHMGADMSDLIQGGLIGLLRGIEKYDS 300

Query: 401  SRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGITPSIDR 222
            SRG KISTYVYWWIRQGVTRTFFEN KTLRLPTHLHERLSAIR+AKAKLERKGITPSIDR
Sbjct: 301  SRGHKISTYVYWWIRQGVTRTFFENSKTLRLPTHLHERLSAIRSAKAKLERKGITPSIDR 360

Query: 221  IAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTRHGIDE 42
            IAETLNMSRKKVTNATEAVCKV+SLDK AFPS+NGIPG+TLHSYIADDCPDNN  HG+D 
Sbjct: 361  IAETLNMSRKKVTNATEAVCKVFSLDKEAFPSLNGIPGDTLHSYIADDCPDNNPWHGVDV 420

Query: 41   G 39
            G
Sbjct: 421  G 421


>gb|KVI10078.1| RNA polymerase sigma-70 [Cynara cardunculus var. scolymus]
          Length = 504

 Score =  529 bits (1363), Expect = e-179
 Identities = 282/422 (66%), Positives = 321/422 (76%), Gaps = 10/422 (2%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSRDTQ 1095
            V+ L   K LL SS YYS+V+DKLSCSSNLGFIFVP TN+I SKKSS Y    + SRDT 
Sbjct: 7    VVGLRAVKMLLGSSPYYSDVSDKLSCSSNLGFIFVPATNLIASKKSSNYGHGFIYSRDTH 66

Query: 1094 PIRAVKEHVDTTIDHPSTDHWVQTFDYFDEDV-------DAXXXXXXXXLEKQWXXXXXX 936
             IRA+KEHVDT +D PSTD WVQ FD+ DE+V       +A        LEKQW      
Sbjct: 67   SIRALKEHVDTALDLPSTDQWVQKFDHLDEEVSEHELSVEALLLLHKSLLEKQWTLSTER 126

Query: 935  XXXXXXT---SQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISPELLQ 765
                  T   S+KVHVTGSGISARRRR+++QNKT + N S ++ GGS+QLRSIISPELLQ
Sbjct: 127  TTTANPTERNSRKVHVTGSGISARRRRIDAQNKTASRNCSVNQVGGSRQLRSIISPELLQ 186

Query: 764  NCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAAALKI 585
            NCQ+GYLKGV+N+ALLTH+EVVALS+KIKIGL               EP+EKQLA +L+I
Sbjct: 187  NCQRGYLKGVRNEALLTHSEVVALSEKIKIGLHLEEEKSRLKERLGTEPSEKQLATSLQI 246

Query: 584  SRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXIEKYD 405
            S+++LQTKQ ECTLAREKLALSN+RLVMSVAQKY  MGA+               IEKYD
Sbjct: 247  SQLDLQTKQTECTLAREKLALSNVRLVMSVAQKYKHMGADMSDLIQGGLIGLLRGIEKYD 306

Query: 404  SSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGITPSID 225
            SSRG KISTYVYWWIRQGVTRTFFEN KTLRLPTHLHERL AIRNAK+KLERKGITPSID
Sbjct: 307  SSRGHKISTYVYWWIRQGVTRTFFENSKTLRLPTHLHERLGAIRNAKSKLERKGITPSID 366

Query: 224  RIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTRHGID 45
            +IAE+L MSRKKVTNATEAV KV+SLDK AFPS+NG+PG+TLHSYIADD P NN  HG+D
Sbjct: 367  KIAESLKMSRKKVTNATEAVYKVFSLDKEAFPSLNGLPGDTLHSYIADDSPQNNPWHGVD 426

Query: 44   EG 39
            EG
Sbjct: 427  EG 428


>gb|KVI04620.1| RNA polymerase sigma-70 [Cynara cardunculus var. scolymus]
          Length = 507

 Score =  459 bits (1180), Expect = e-151
 Identities = 246/425 (57%), Positives = 300/425 (70%), Gaps = 13/425 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSR--- 1104
            V+ L  G+RLL SSSYYS+V++KLSCSS+LGFIFVPT N+I +KKSS Y    +++R   
Sbjct: 7    VVGLRAGERLLGSSSYYSDVSEKLSCSSDLGFIFVPTKNVITAKKSSNYGHGFISNRLNQ 66

Query: 1103 DTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED------VDAXXXXXXXXLEKQWXXXX 942
            D+  IRA+KEHVDT  D  S D WVQ F++ +E+      V+A        LEKQW    
Sbjct: 67   DSHYIRALKEHVDTASDPSSIDQWVQGFEHLEEEGDQDFSVEALLLLQKSFLEKQWNLST 126

Query: 941  XXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISPE 774
                     ++K    ++VTGSG SARRRR+++Q KTP  + S  ++GG KQLRSIISPE
Sbjct: 127  ERTLTTATPTEKNTKKMYVTGSGKSARRRRIDAQRKTPNRSFSPIQDGGKKQLRSIISPE 186

Query: 773  LLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAAA 594
            LLQN  +GY KGV +D LLTHAEVV LS K+KIG                EP+E+QLAA+
Sbjct: 187  LLQNRTRGYFKGVISDTLLTHAEVVVLSKKVKIGQHLEERKSRLKKSLGSEPSEEQLAAS 246

Query: 593  LKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXIE 414
            L+ISR ELQ KQIEC LAREKLA+SN+RLVMS+AQ+YA+MG E               IE
Sbjct: 247  LRISRAELQIKQIECNLAREKLAMSNVRLVMSIAQRYANMGVEIGDLIQGGLIGLLRGIE 306

Query: 413  KYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGITP 234
            KYDSSRGFKISTYVYWWIRQGV++   EN +TLRLP H+HERL AIRNAKAKLE KGI P
Sbjct: 307  KYDSSRGFKISTYVYWWIRQGVSKALIENSRTLRLPIHMHERLGAIRNAKAKLEEKGIIP 366

Query: 233  SIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTRH 54
            SI++IAE+LNMS KKV NATEA CKV+SLD+ AFPS+N  PG+T HSY+AD+ P NN  H
Sbjct: 367  SIEKIAESLNMSTKKVLNATEAKCKVFSLDRPAFPSLNDRPGDTFHSYMADEHPGNNPWH 426

Query: 53   GIDEG 39
            G+D G
Sbjct: 427  GVDHG 431


>ref|XP_022038093.1| RNA polymerase sigma factor sigA-like [Helianthus annuus]
 ref|XP_022038094.1| RNA polymerase sigma factor sigA-like [Helianthus annuus]
 gb|OTG25137.1| putative sigma factor A [Helianthus annuus]
          Length = 508

 Score =  439 bits (1129), Expect = e-143
 Identities = 241/428 (56%), Positives = 293/428 (68%), Gaps = 14/428 (3%)
 Frame = -1

Query: 1280 NVVIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSR- 1104
            N VI L  G+RLL SSSYYS+V +KL  SS LGF+ VPT N+I +KKS+ Y    +  R 
Sbjct: 5    NAVIGLRAGERLLSSSSYYSDVTEKLPSSSELGFVAVPTKNVIAAKKSTNYGHGFIPKRH 64

Query: 1103 --DTQPIRAVKEHVDTTIDHPSTDHWVQTFDYF---DED----VDAXXXXXXXXLEKQWX 951
              DT+ IRA+KEHV+T     S D WVQ F++    D D    V+A        LEKQW 
Sbjct: 65   NQDTRYIRALKEHVNTASGFSSIDQWVQGFEHIVNEDSDQEFSVEALLSLQKSLLEKQWS 124

Query: 950  XXXXXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSII 783
                        ++K    ++V GSG SARRRR+++Q KT     S+++ G  K L+ +I
Sbjct: 125  LSTETTLTKVNPTEKSSKRIYVNGSGKSARRRRIDAQRKTTNKRFSSNEVGTKKPLKFVI 184

Query: 782  SPELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQL 603
            SPELLQN   GY+KG+ +D LLTHAEVV LS KIKIG +              EP+E QL
Sbjct: 185  SPELLQNRASGYVKGITSDTLLTHAEVVVLSKKIKIGQRLEERKSRLKERLGSEPSEVQL 244

Query: 602  AAALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXX 423
            AA+L+ISR ELQ KQIEC LAREKLA+SNIRLVMSVAQKYA+MGAE              
Sbjct: 245  AASLRISRAELQMKQIECKLAREKLAMSNIRLVMSVAQKYANMGAEIGDLIQGGLVGLLR 304

Query: 422  XIEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKG 243
             IEKYDSSRGFKISTYVYWWIRQGV++   EN +TLR+P H+HERLSAIR AKAKLE+KG
Sbjct: 305  GIEKYDSSRGFKISTYVYWWIRQGVSKALIENSRTLRVPVHVHERLSAIRQAKAKLEKKG 364

Query: 242  ITPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNN 63
            ITPSI++IAE+LNMS KKV NATEA CKV+SLD+ AFPS+NG+P +T HSY+ADD P+NN
Sbjct: 365  ITPSIEKIAESLNMSTKKVLNATEAKCKVFSLDRPAFPSLNGLPSDTFHSYMADDHPENN 424

Query: 62   TRHGIDEG 39
              HG+D G
Sbjct: 425  PWHGVDNG 432


>gb|PLY90261.1| hypothetical protein LSAT_8X14040 [Lactuca sativa]
          Length = 497

 Score =  423 bits (1087), Expect = e-137
 Identities = 238/426 (55%), Positives = 285/426 (66%), Gaps = 14/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSR--- 1104
            VI L  G+RLL SSSYYS+VN+KLSCS++LGFI VP  N+I +KKSS Y    +++R   
Sbjct: 6    VIGLKAGERLLGSSSYYSDVNEKLSCSTDLGFISVPNKNMITAKKSSNYGHGFISNRHNQ 65

Query: 1103 DTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXXX 945
            DT  IRA+KEHVD T D  S   WVQ  ++  E+       VDA        LEKQW   
Sbjct: 66   DTHYIRALKEHVDITSDPSSIHPWVQGSEHLKEEDSDQDFSVDALLLFQKSLLEKQWNLS 125

Query: 944  XXXXXXXXXT----SQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISP 777
                          S+K++V+GSG SARRRR+++Q KTP            + +R +ISP
Sbjct: 126  NKGALTTVNPTDKSSRKMYVSGSGKSARRRRIDAQKKTPN----------KRCIRFVISP 175

Query: 776  ELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAA 597
            +LLQN     +KG+ +D+LLTHAEVV LS KIKIG                EP+E QLAA
Sbjct: 176  DLLQNRAIANVKGITSDSLLTHAEVVVLSKKIKIGQHLEDQKSRLKERLGCEPSEDQLAA 235

Query: 596  ALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXI 417
            ++KI R ELQ KQIEC LAREKLA+SN+RLVMSVAQKYA+MG E               I
Sbjct: 236  SMKIPRAELQVKQIECKLAREKLAMSNVRLVMSVAQKYANMGVEIGDLIQGGLIGLLRGI 295

Query: 416  EKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGIT 237
            EKYDSSRGFKISTYVYWWIRQGV++   EN +TLRLP H+HERLSAIRNAKAKLE KGIT
Sbjct: 296  EKYDSSRGFKISTYVYWWIRQGVSKALIENSRTLRLPIHMHERLSAIRNAKAKLEEKGIT 355

Query: 236  PSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTR 57
            PSI++IAETL MS KKV NATEA CKV+SLD+ AFPSING PG+T  SY+ADD P N+  
Sbjct: 356  PSIEKIAETLKMSTKKVLNATEAKCKVFSLDRPAFPSINGNPGDTFQSYMADDHPGNDPW 415

Query: 56   HGIDEG 39
            HG+D G
Sbjct: 416  HGVDHG 421


>ref|XP_023757341.1| RNA polymerase sigma factor sigA-like [Lactuca sativa]
 ref|XP_023757342.1| RNA polymerase sigma factor sigA-like [Lactuca sativa]
          Length = 498

 Score =  423 bits (1087), Expect = e-137
 Identities = 238/426 (55%), Positives = 285/426 (66%), Gaps = 14/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSR--- 1104
            VI L  G+RLL SSSYYS+VN+KLSCS++LGFI VP  N+I +KKSS Y    +++R   
Sbjct: 7    VIGLKAGERLLGSSSYYSDVNEKLSCSTDLGFISVPNKNMITAKKSSNYGHGFISNRHNQ 66

Query: 1103 DTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXXX 945
            DT  IRA+KEHVD T D  S   WVQ  ++  E+       VDA        LEKQW   
Sbjct: 67   DTHYIRALKEHVDITSDPSSIHPWVQGSEHLKEEDSDQDFSVDALLLFQKSLLEKQWNLS 126

Query: 944  XXXXXXXXXT----SQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISP 777
                          S+K++V+GSG SARRRR+++Q KTP            + +R +ISP
Sbjct: 127  NKGALTTVNPTDKSSRKMYVSGSGKSARRRRIDAQKKTPN----------KRCIRFVISP 176

Query: 776  ELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAA 597
            +LLQN     +KG+ +D+LLTHAEVV LS KIKIG                EP+E QLAA
Sbjct: 177  DLLQNRAIANVKGITSDSLLTHAEVVVLSKKIKIGQHLEDQKSRLKERLGCEPSEDQLAA 236

Query: 596  ALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXI 417
            ++KI R ELQ KQIEC LAREKLA+SN+RLVMSVAQKYA+MG E               I
Sbjct: 237  SMKIPRAELQVKQIECKLAREKLAMSNVRLVMSVAQKYANMGVEIGDLIQGGLIGLLRGI 296

Query: 416  EKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGIT 237
            EKYDSSRGFKISTYVYWWIRQGV++   EN +TLRLP H+HERLSAIRNAKAKLE KGIT
Sbjct: 297  EKYDSSRGFKISTYVYWWIRQGVSKALIENSRTLRLPIHMHERLSAIRNAKAKLEEKGIT 356

Query: 236  PSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTR 57
            PSI++IAETL MS KKV NATEA CKV+SLD+ AFPSING PG+T  SY+ADD P N+  
Sbjct: 357  PSIEKIAETLKMSTKKVLNATEAKCKVFSLDRPAFPSINGNPGDTFQSYMADDHPGNDPW 416

Query: 56   HGIDEG 39
            HG+D G
Sbjct: 417  HGVDHG 422


>gb|KDO48035.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 443

 Score =  402 bits (1032), Expect = e-130
 Identities = 225/426 (52%), Positives = 288/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFI---FVPTTNIIVSKKSSKYSPNLVNS- 1107
            VI L+ GKRLL SS YYS++++K S  ++LG        T N++ +KKSS Y+P+  +S 
Sbjct: 7    VIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R TQPI+A+KEHVDT     + + W +  +  +E+       V+A        LEKQW  
Sbjct: 67   RQTQPIKALKEHVDTNFAS-TAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQWNL 125

Query: 947  XXXXXXXXXXTSQKVH----VTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                       S+K H    VT SG+SAR+RRLNS+ K  + N S  +  GSKQLRS+IS
Sbjct: 126  SFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMIS 185

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            PEL+QN  KGY+KGV ++ LLTHAEVV LS KIK GL               EP+ +QLA
Sbjct: 186  PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
            A+L+ISR ELQ+  +EC+LAREKL +SN+RLVMS+AQ+Y +MGA+               
Sbjct: 246  ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   EN +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 306  IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV 365

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPS+DRIAE LNMS+KKV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+  +NN 
Sbjct: 366  TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP 425

Query: 59   RHGIDE 42
             HG+D+
Sbjct: 426  WHGVDD 431


>ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
 ref|XP_011012458.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
          Length = 509

 Score =  404 bits (1038), Expect = e-130
 Identities = 222/426 (52%), Positives = 289/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTT---NIIVSKKSSKYSPNLVNS- 1107
            VI L+TGKRLL SS YYS++ +KLS  ++ G  + PT    N++V+KKSS Y PN  +S 
Sbjct: 7    VIGLSTGKRLLSSSFYYSDLTEKLSSVNDHGITYCPTATTKNVVVAKKSSNYGPNFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R++  I+A+KEHVDT     +   W +TFD F+E+       V+A        LEKQW  
Sbjct: 67   RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 947  XXXXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                      TS+K    + VT SG+SAR+RR+N++ K    +   S++   K LRS+IS
Sbjct: 127  SFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFLRSVIS 186

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            P+LLQN  KGY+KGV +D +L H EVV LS  I+ GL               EP+++Q+A
Sbjct: 187  PDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIA 246

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
             +L+ISR +LQ K I+C+LAREKLA+SN+RLVMS+AQKY +MGAE               
Sbjct: 247  DSLRISRADLQAKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRG 306

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   +N +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 307  IEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGV 366

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPSIDRIAE+LNMS++KV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+ P+NN 
Sbjct: 367  TPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNP 426

Query: 59   RHGIDE 42
             HG+DE
Sbjct: 427  WHGVDE 432


>ref|XP_022861587.1| RNA polymerase sigma factor sigA [Olea europaea var. sylvestris]
 ref|XP_022861588.1| RNA polymerase sigma factor sigA [Olea europaea var. sylvestris]
 ref|XP_022861589.1| RNA polymerase sigma factor sigA [Olea europaea var. sylvestris]
          Length = 496

 Score =  403 bits (1035), Expect = e-130
 Identities = 229/415 (55%), Positives = 283/415 (68%), Gaps = 4/415 (0%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTTNIIVSKKSSKYSPNLVNSRDTQ 1095
            VI L+TGKRLL S+ YYS+  +KL+ +S    +   T N+I +KKSS Y P  ++ R+ Q
Sbjct: 7    VIGLSTGKRLLSSNFYYSDFVEKLAGTSYQHQVLPSTKNVITAKKSSNYGPTFLSDRNPQ 66

Query: 1094 PIRAVKEHVDTTIDHPSTDHWV-QTFDYFDED--VDAXXXXXXXXLEKQWXXXXXXXXXX 924
             IRAVKEHVDT  +  + +  + Q  +  D D  VDA        LEKQW          
Sbjct: 67   SIRAVKEHVDTASNPYAVEEPLPQGEETSDPDYLVDALLLLQKFMLEKQWNLSTDMPSEK 126

Query: 923  XXTSQKVHVTGSGISARRRRLNSQNKTPTVNSSASKN-GGSKQLRSIISPELLQNCQKGY 747
                +KV VTGSG SARRRR++S+ K     SS +   G SKQLRS+ISPELLQN  KGY
Sbjct: 127  GR--KKVQVTGSGTSARRRRIDSRRKLIFRRSSTTAQIGKSKQLRSVISPELLQNRTKGY 184

Query: 746  LKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAAALKISRVELQ 567
            +KGV ++ LLTH EVV LS KIK GL               +P+++QLA +L+ISR ELQ
Sbjct: 185  IKGVVSEELLTHVEVVQLSKKIKAGLLLEEHKSRLKERLGCDPSDEQLATSLRISRAELQ 244

Query: 566  TKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXIEKYDSSRGFK 387
            ++ +EC+LAREKL +SNIRLVMS+AQ+Y +MGAE               IEK+DSS+G+K
Sbjct: 245  SEFMECSLAREKLTMSNIRLVMSIAQRYDNMGAEMADLIQGGLIGLLRGIEKFDSSKGYK 304

Query: 386  ISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGITPSIDRIAETL 207
            ISTYVYWWIRQGV+R    N +TLRLPTHLHERLS IRNAKAKLE KGITPS+DRIAE L
Sbjct: 305  ISTYVYWWIRQGVSRALVRNSRTLRLPTHLHERLSLIRNAKAKLEEKGITPSVDRIAECL 364

Query: 206  NMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTRHGIDE 42
            NMS+KKV NATEA+ KV+SLD+ AFPS+NG+PGETLHSYIAD   +NN  H +DE
Sbjct: 365  NMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADTRIENNPWHEVDE 419


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA [Citrus sinensis]
 ref|XP_006484699.1| PREDICTED: RNA polymerase sigma factor sigA [Citrus sinensis]
 ref|XP_006484700.1| PREDICTED: RNA polymerase sigma factor sigA [Citrus sinensis]
          Length = 508

 Score =  402 bits (1034), Expect = e-129
 Identities = 225/426 (52%), Positives = 288/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFI---FVPTTNIIVSKKSSKYSPNLVNS- 1107
            VI L+ GKRLL SS YYS++++K S  ++LG        T N++ +KKSS Y+P+  +S 
Sbjct: 7    VIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R TQPI+A+KEHVDT     + + W +  +  +E+       V+A        LEKQW  
Sbjct: 67   RQTQPIKALKEHVDTNFAS-TAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQWNL 125

Query: 947  XXXXXXXXXXTSQKVH----VTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                       S+K H    VT SG+SAR+RRLNS+ K  + N S  +  GSKQLRS+IS
Sbjct: 126  SFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQNGSKQLRSMIS 185

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            PEL+QN  KGY+KGV ++ LLTHAEVV LS KIK GL               EP+ +QLA
Sbjct: 186  PELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
            A+L+ISR ELQ+  +EC+LAREKL +SN+RLVMS+AQ+Y +MGA+               
Sbjct: 246  ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   EN +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 306  IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV 365

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPS+DRIAE LNMS+KKV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+  +NN 
Sbjct: 366  TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP 425

Query: 59   RHGIDE 42
             HG+D+
Sbjct: 426  WHGVDD 431


>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
 gb|KDO48033.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score =  402 bits (1032), Expect = e-129
 Identities = 225/426 (52%), Positives = 288/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFI---FVPTTNIIVSKKSSKYSPNLVNS- 1107
            VI L+ GKRLL SS YYS++++K S  ++LG        T N++ +KKSS Y+P+  +S 
Sbjct: 7    VIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R TQPI+A+KEHVDT     + + W +  +  +E+       V+A        LEKQW  
Sbjct: 67   RQTQPIKALKEHVDTNFAS-TAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQWNL 125

Query: 947  XXXXXXXXXXTSQKVH----VTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                       S+K H    VT SG+SAR+RRLNS+ K  + N S  +  GSKQLRS+IS
Sbjct: 126  SFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMIS 185

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            PEL+QN  KGY+KGV ++ LLTHAEVV LS KIK GL               EP+ +QLA
Sbjct: 186  PELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
            A+L+ISR ELQ+  +EC+LAREKL +SN+RLVMS+AQ+Y +MGA+               
Sbjct: 246  ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG 305

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   EN +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 306  IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV 365

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPS+DRIAE LNMS+KKV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+  +NN 
Sbjct: 366  TPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP 425

Query: 59   RHGIDE 42
             HG+D+
Sbjct: 426  WHGVDD 431


>ref|XP_006437403.1| RNA polymerase sigma factor sigA [Citrus clementina]
 ref|XP_024041065.1| RNA polymerase sigma factor sigA [Citrus clementina]
 ref|XP_024041066.1| RNA polymerase sigma factor sigA [Citrus clementina]
 ref|XP_024041067.1| RNA polymerase sigma factor sigA [Citrus clementina]
 gb|ESR50643.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  401 bits (1030), Expect = e-129
 Identities = 224/426 (52%), Positives = 288/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFI---FVPTTNIIVSKKSSKYSPNLVNS- 1107
            VI L+ GKRLL SS YYS++++K S  ++LG        T N++ +KKSS Y+P+  +S 
Sbjct: 7    VIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R TQPI+A+KEHVDT     + + W +  +  +E+       V+A        LEKQW  
Sbjct: 67   RQTQPIKALKEHVDTNFAS-TAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEKQWNL 125

Query: 947  XXXXXXXXXXTSQKVH----VTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                       S+K H    VT SG+SAR+RRLNS+ K  + N S  +  GSKQLRS+IS
Sbjct: 126  SFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQNGSKQLRSMIS 185

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            PEL+QN  KGY+KGV ++ LLTHAEVV LS KIK GL               EP+ +QLA
Sbjct: 186  PELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLA 245

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
            A+L+ISR ELQ+  +EC+LAREKL +SN+RLVMS+AQ+Y +MGA+               
Sbjct: 246  ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLIGLLRG 305

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   EN +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 306  IEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGV 365

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TP++DRIAE LNMS+KKV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+  +NN 
Sbjct: 366  TPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP 425

Query: 59   RHGIDE 42
             HG+D+
Sbjct: 426  WHGVDD 431


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
 gb|PNS90426.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
          Length = 451

 Score =  398 bits (1023), Expect = e-128
 Identities = 220/426 (51%), Positives = 289/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTT---NIIVSKKSSKYSPNLVNS- 1107
            VI L++GKRLL SS YYS++ +KLS  ++ G  + PT    N+IV+KKSS Y P+  +S 
Sbjct: 7    VIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R++  I+A+KEHVDT     +   W +TFD F+E+       V+A        LEKQW  
Sbjct: 67   RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 947  XXXXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                      TS+K    + VT SG+SAR+RR+N++ K    +   S++   K LRS+ S
Sbjct: 127  SFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFLRSVSS 186

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            P+LLQN  KGY+KGV +D +L H EVV LS  I+ GL               EP+++Q+A
Sbjct: 187  PDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIA 246

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
             +L+ISR +LQ+K I+C+LAREKLA+SN+RLVMS+AQKY +MGAE               
Sbjct: 247  DSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRG 306

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   +N +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 307  IEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGV 366

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPSIDRIAE+LNMS++KV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+ P+NN 
Sbjct: 367  TPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNP 426

Query: 59   RHGIDE 42
             HG+DE
Sbjct: 427  WHGVDE 432


>ref|NP_001312542.1| RNA polymerase sigma factor sigA-like [Nicotiana tabacum]
 ref|XP_016474122.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nicotiana tabacum]
 dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  400 bits (1028), Expect = e-128
 Identities = 220/424 (51%), Positives = 288/424 (67%), Gaps = 14/424 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSN--LGFIFVPTT-NIIVSKKSSKYSPNLVNSR 1104
            VI L+ GKRLL SS YYS++N+KL+C+S+  L    VP+  N+I +KKSS YSP+ V+SR
Sbjct: 7    VIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPSCVSSR 66

Query: 1103 DTQPIRAVKEHVDTTIDHPSTDHWVQTFDYF-------DEDVDAXXXXXXXXLEKQWXXX 945
             +Q  +++KEHVD T D      W + ++         DE V+         LEKQW   
Sbjct: 67   KSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEKQWNLS 126

Query: 944  XXXXXXXXXT----SQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISP 777
                          S+K+H+T SG SARRRR++S+ +    +SSA+    +K LRSII P
Sbjct: 127  LEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLRSIIGP 186

Query: 776  ELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAA 597
            ELLQN  KGY+KGV ++ LLTHAEV+ LS KI++GL               EP++ QLA 
Sbjct: 187  ELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAV 246

Query: 596  ALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXI 417
            +LK+SR +LQ+  IEC+LARE+LA+SN+RLVMS+AQ+Y ++GAE               I
Sbjct: 247  SLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLLRGI 306

Query: 416  EKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGIT 237
            EK+D S+G+KISTYVYWWIRQGV+R   EN +TLRLPT+LHERLS IRNAKA+LE KGIT
Sbjct: 307  EKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEKGIT 366

Query: 236  PSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTR 57
            PS++ IA +LNMS+KKV NATEA  K+YSLD+ AFPS+NG+PGETLHSYIAD+  +NN  
Sbjct: 367  PSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLENNPW 426

Query: 56   HGID 45
            HG+D
Sbjct: 427  HGVD 430


>ref|XP_009771934.1| PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris]
          Length = 508

 Score =  400 bits (1028), Expect = e-128
 Identities = 220/424 (51%), Positives = 288/424 (67%), Gaps = 14/424 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSN--LGFIFVPTT-NIIVSKKSSKYSPNLVNSR 1104
            VI L+ GKRLL SS YYS++N+KL+C+S+  L    VP+  N+I +KKSS YSP+ V+SR
Sbjct: 7    VIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPSCVSSR 66

Query: 1103 DTQPIRAVKEHVDTTIDHPSTDHWVQTFDYF-------DEDVDAXXXXXXXXLEKQWXXX 945
             +Q  +++KEHVD T D      W + ++         DE V+         LEKQW   
Sbjct: 67   KSQSTKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEKQWNLS 126

Query: 944  XXXXXXXXXT----SQKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIISP 777
                          S+K+H+T SG SARRRR++S+ +    +SSA+    +K LRSII P
Sbjct: 127  LEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLRSIIGP 186

Query: 776  ELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLAA 597
            ELLQN  KGY+KGV ++ LLTHAEV+ LS KI++GL               EP++ QLA 
Sbjct: 187  ELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAV 246

Query: 596  ALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXXI 417
            +LK+SR +LQ+  IEC+LARE+LA+SN+RLVMS+AQ+Y ++GAE               I
Sbjct: 247  SLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLLRGI 306

Query: 416  EKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGIT 237
            EK+D S+G+KISTYVYWWIRQGV+R   EN +TLRLPT+LHERLS IRNAKA+LE KGIT
Sbjct: 307  EKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLEEKGIT 366

Query: 236  PSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNTR 57
            PS++ IA +LNMS+KKV NATEA  K+YSLD+ AFPS+NG+PGETLHSYIAD+  +NN  
Sbjct: 367  PSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHLENNPW 426

Query: 56   HGID 45
            HG+D
Sbjct: 427  HGVD 430


>gb|PNS90427.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
          Length = 474

 Score =  398 bits (1023), Expect = e-128
 Identities = 220/426 (51%), Positives = 289/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTT---NIIVSKKSSKYSPNLVNS- 1107
            VI L++GKRLL SS YYS++ +KLS  ++ G  + PT    N+IV+KKSS Y P+  +S 
Sbjct: 7    VIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R++  I+A+KEHVDT     +   W +TFD F+E+       V+A        LEKQW  
Sbjct: 67   RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 947  XXXXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                      TS+K    + VT SG+SAR+RR+N++ K    +   S++   K LRS+ S
Sbjct: 127  SFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFLRSVSS 186

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            P+LLQN  KGY+KGV +D +L H EVV LS  I+ GL               EP+++Q+A
Sbjct: 187  PDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIA 246

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
             +L+ISR +LQ+K I+C+LAREKLA+SN+RLVMS+AQKY +MGAE               
Sbjct: 247  DSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRG 306

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   +N +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 307  IEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGV 366

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPSIDRIAE+LNMS++KV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+ P+NN 
Sbjct: 367  TPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNP 426

Query: 59   RHGIDE 42
             HG+DE
Sbjct: 427  WHGVDE 432


>gb|PNS90422.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
 gb|PNS90425.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
          Length = 508

 Score =  398 bits (1023), Expect = e-128
 Identities = 220/426 (51%), Positives = 289/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTT---NIIVSKKSSKYSPNLVNS- 1107
            VI L++GKRLL SS YYS++ +KLS  ++ G  + PT    N+IV+KKSS Y P+  +S 
Sbjct: 7    VIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R++  I+A+KEHVDT     +   W +TFD F+E+       V+A        LEKQW  
Sbjct: 67   RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 947  XXXXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                      TS+K    + VT SG+SAR+RR+N++ K    +   S++   K LRS+ S
Sbjct: 127  SFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFLRSVSS 186

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            P+LLQN  KGY+KGV +D +L H EVV LS  I+ GL               EP+++Q+A
Sbjct: 187  PDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIA 246

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
             +L+ISR +LQ+K I+C+LAREKLA+SN+RLVMS+AQKY +MGAE               
Sbjct: 247  DSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRG 306

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   +N +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 307  IEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGV 366

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPSIDRIAE+LNMS++KV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+ P+NN 
Sbjct: 367  TPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNP 426

Query: 59   RHGIDE 42
             HG+DE
Sbjct: 427  WHGVDE 432


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
 gb|PNS90423.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
 gb|PNS90424.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
 gb|PNS90428.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
 gb|PNS90430.1| hypothetical protein POPTR_019G043300v3 [Populus trichocarpa]
          Length = 509

 Score =  398 bits (1023), Expect = e-128
 Identities = 220/426 (51%), Positives = 289/426 (67%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFIFVPTT---NIIVSKKSSKYSPNLVNS- 1107
            VI L++GKRLL SS YYS++ +KLS  ++ G  + PT    N+IV+KKSS Y P+  +S 
Sbjct: 7    VIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPSFPSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R++  I+A+KEHVDT     +   W +TFD F+E+       V+A        LEKQW  
Sbjct: 67   RNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLEKQWNL 126

Query: 947  XXXXXXXXXXTSQK----VHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                      TS+K    + VT SG+SAR+RR+N++ K    +   S++   K LRS+ S
Sbjct: 127  SFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFLRSVSS 186

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            P+LLQN  KGY+KGV +D +L H EVV LS  I+ GL               EP+++Q+A
Sbjct: 187  PDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIA 246

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
             +L+ISR +LQ+K I+C+LAREKLA+SN+RLVMS+AQKY +MGAE               
Sbjct: 247  DSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRG 306

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+GFKISTYVYWWIRQGV+R   +N +TLRLP HLHERL  IRNAK +LE KG+
Sbjct: 307  IEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRLEEKGV 366

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPSIDRIAE+LNMS++KV NATEA+ KV+SLD+ AFPS+NG+PGET HSYIAD+ P+NN 
Sbjct: 367  TPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRPENNP 426

Query: 59   RHGIDE 42
             HG+DE
Sbjct: 427  WHGVDE 432


>ref|XP_023877044.1| RNA polymerase sigma factor sigA isoform X1 [Quercus suber]
 ref|XP_023877045.1| RNA polymerase sigma factor sigA isoform X1 [Quercus suber]
 gb|POE80414.1| rna polymerase sigma factor siga [Quercus suber]
          Length = 509

 Score =  397 bits (1019), Expect = e-127
 Identities = 223/426 (52%), Positives = 278/426 (65%), Gaps = 15/426 (3%)
 Frame = -1

Query: 1274 VIVLTTGKRLLHSSSYYSEVNDKLSCSSNLGFI---FVPTTNIIVSKKSSKYSPNLVNS- 1107
            VI L+ GKRLL SS YYS++ DKLS  ++          T  +I SKKSS YSP++ +S 
Sbjct: 7    VIGLSAGKRLLSSSYYYSDLTDKLSYVNDHALAHNQITSTKKVISSKKSSNYSPSITSSN 66

Query: 1106 RDTQPIRAVKEHVDTTIDHPSTDHWVQTFDYFDED-------VDAXXXXXXXXLEKQWXX 948
            R TQ I+AVKEHVD T    + + WVQ     +E+       V+A        LEKQW  
Sbjct: 67   RQTQSIKAVKEHVDITSSPSAEEPWVQRHTSLEEESSDLNYSVEALLLLQKSMLEKQWNL 126

Query: 947  XXXXXXXXXXTS----QKVHVTGSGISARRRRLNSQNKTPTVNSSASKNGGSKQLRSIIS 780
                            +K+ VT SG+SAR+RR+ ++ K    N    +   SKQ+RS+IS
Sbjct: 127  SFEQTVLTDSPRGRILKKIPVTCSGVSARQRRMTTRKKNLNKNGYMMQPCTSKQMRSMIS 186

Query: 779  PELLQNCQKGYLKGVKNDALLTHAEVVALSDKIKIGLQXXXXXXXXXXXXXXEPTEKQLA 600
            PELLQN  KGY+KGV ++  LTH++VV LS KIK G+               EP++ QLA
Sbjct: 187  PELLQNRSKGYVKGVLSEYSLTHSDVVCLSKKIKTGISLEEHRLRLKERLGCEPSDDQLA 246

Query: 599  AALKISRVELQTKQIECTLAREKLALSNIRLVMSVAQKYASMGAEXXXXXXXXXXXXXXX 420
             AL+I R ELQ+K IECTLAREKLA+ NIRLVMS+A +Y +MGAE               
Sbjct: 247  TALRIPRAELQSKLIECTLAREKLAMGNIRLVMSIAHRYENMGAEMADLVQGGLIGLLRG 306

Query: 419  IEKYDSSRGFKISTYVYWWIRQGVTRTFFENCKTLRLPTHLHERLSAIRNAKAKLERKGI 240
            IEK+DSS+G+KISTYVYWWIRQGV+R   EN +TLRLPTHLHERL  I+NAK KL+ KGI
Sbjct: 307  IEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIKNAKIKLQEKGI 366

Query: 239  TPSIDRIAETLNMSRKKVTNATEAVCKVYSLDKAAFPSINGIPGETLHSYIADDCPDNNT 60
            TPSIDRIAE LNMS+KKV NATEA+ KV+SLD+  FPS+NG+PGET HSYIAD+C +NN 
Sbjct: 367  TPSIDRIAECLNMSKKKVKNATEAISKVFSLDREVFPSLNGLPGETHHSYIADNCLENNP 426

Query: 59   RHGIDE 42
             HG+DE
Sbjct: 427  WHGVDE 432