BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00019155
         (355 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY03963.1| DNA-directed RNA polymerase ii subunit rpb3-a-lik...    55   1e-07
gb|OAY45617.1| hypothetical protein MANES_07G076700 [Manihot esc...    55   1e-07
gb|PHT33498.1| DNA-directed RNA polymerases II, IV and V subunit...    57   5e-07
ref|XP_016553286.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_018851259.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_019236041.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_015892771.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_013609360.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_009785778.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_009605052.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_013705421.1| DNA-directed RNA polymerases II, IV and V su...    57   5e-07
ref|XP_017256206.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_015076219.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_010488959.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_010467299.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_010518168.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_009119413.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerases II, ...    57   5e-07
ref|NP_179145.1| DNA-directed RNA polymerase family protein [Ara...    57   5e-07

>gb|PNY03963.1| DNA-directed RNA polymerase ii subunit rpb3-a-like protein, partial
           [Trifolium pratense]
          Length = 90

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLS++TVE DDQFGELGAHMRGG
Sbjct: 63  KLDAVRLSEDTVEADDQFGELGAHMRGG 90


>gb|OAY45617.1| hypothetical protein MANES_07G076700 [Manihot esculenta]
          Length = 94

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLS++TVE DDQFGELGAHMRGG
Sbjct: 67  KLDAVRLSEDTVEADDQFGELGAHMRGG 94


>gb|PHT33498.1| DNA-directed RNA polymerases II, IV and V subunit 3 [Capsicum
           baccatum]
 gb|PHU02158.1| DNA-directed RNA polymerases II, IV and V subunit 3 [Capsicum
           chinense]
          Length = 316

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 289 KLDAVRLSDDTVEADDQFGELGAHMRGG 316


>ref|XP_016553286.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Capsicum annuum]
 gb|PHT67433.1| DNA-directed RNA polymerases II, IV and V subunit 3 [Capsicum
           annuum]
          Length = 316

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 289 KLDAVRLSDDTVEADDQFGELGAHMRGG 316


>ref|XP_018851259.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Juglans regia]
          Length = 317

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 290 KLDAVRLSDDTVEADDQFGELGAHMRGG 317


>ref|XP_019236041.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Nicotiana attenuata]
 gb|OIT24251.1| dna-directed rna polymerases ii, iv and v subunit 3 [Nicotiana
           attenuata]
          Length = 318

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 291 KLDAVRLSDDTVEADDQFGELGAHMRGG 318


>ref|XP_015892771.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Ziziphus jujuba]
          Length = 318

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 291 KLDAVRLSDDTVEADDQFGELGAHMRGG 318


>ref|XP_013609360.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Brassica oleracea var. oleracea]
          Length = 318

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 291 KLDAVRLSDDTVEADDQFGELGAHMRGG 318


>ref|XP_009785778.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Nicotiana sylvestris]
 ref|XP_016467048.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Nicotiana tabacum]
          Length = 318

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 291 KLDAVRLSDDTVEADDQFGELGAHMRGG 318


>ref|XP_009605052.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Nicotiana tomentosiformis]
 ref|XP_016515314.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Nicotiana tabacum]
          Length = 318

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 291 KLDAVRLSDDTVEADDQFGELGAHMRGG 318


>ref|XP_013705421.1| DNA-directed RNA polymerases II, IV and V subunit 3 [Brassica
           napus]
 emb|CDY62312.1| BnaCnng39910D [Brassica napus]
          Length = 318

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 291 KLDAVRLSDDTVEADDQFGELGAHMRGG 318


>ref|XP_017256206.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Daucus carota subsp. sativus]
 gb|KZM90637.1| hypothetical protein DCAR_021998 [Daucus carota subsp. sativus]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_015076219.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum pennellii]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_010488959.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Camelina sativa]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_010467299.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Camelina sativa]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_010518168.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Camelina sativa]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_009119413.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Brassica rapa]
 ref|XP_013592961.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Brassica oleracea var. oleracea]
 ref|XP_013742691.1| DNA-directed RNA polymerases II, IV and V subunit 3 [Brassica
           napus]
 ref|XP_013667076.1| DNA-directed RNA polymerases II, IV and V subunit 3 [Brassica
           napus]
 emb|CDY36631.1| BnaA07g04260D [Brassica napus]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
           [Solanum tuberosum]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
           [Solanum lycopersicum]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319


>ref|NP_179145.1| DNA-directed RNA polymerase family protein [Arabidopsis thaliana]
 sp|Q39211.1|NRPB3_ARATH RecName: Full=DNA-directed RNA polymerases II, IV and V subunit 3;
           AltName: Full=DNA-directed RNA polymerase II 36 kDa
           polypeptide A; AltName: Full=DNA-directed RNA polymerase
           II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
           Short=RNA polymerase II subunit B3-A
 gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
 gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
           thaliana]
 gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
           [Arabidopsis thaliana]
 gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
 gb|AEC06400.1| DNA-directed RNA polymerase family protein [Arabidopsis thaliana]
 gb|OAP11363.1| RPB35.5A [Arabidopsis thaliana]
          Length = 319

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -1

Query: 355 KLDAVRLSDETVETDDQFGELGAHMRGG 272
           KLDAVRLSD+TVE DDQFGELGAHMRGG
Sbjct: 292 KLDAVRLSDDTVEADDQFGELGAHMRGG 319