BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00018995
         (3226 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_224078.1| N [Taro vein chlorosis nucleorhabdovirus] >gi|8...   106   4e-20
ref|YP_052850.1| N [Maize mosaic nucleorhabdovirus] >gi|81940135...   104   9e-20
dbj|BAX37186.1| nucleocapsid protein [Orchid fleck dichorhavirus]      97   2e-17
ref|YP_001294924.1| nucleocapsid protein [Orchid fleck dichorhav...    97   3e-17
gb|AHM10390.1| nucleocapsid protein, partial [Taro vein chlorosi...    95   4e-17
gb|ATY73943.1| nucleocapsid protein [Maize Iranian mosaic nucleo...    96   5e-17
gb|ATY73945.1| nucleocapsid protein [Maize Iranian mosaic nucleo...    96   5e-17
gb|ATY73946.1| nucleocapsid protein [Maize Iranian mosaic nucleo...    96   5e-17
ref|YP_009444708.1| nucleocapsid protein [Maize Iranian mosaic n...    96   5e-17
gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nucle...    95   1e-16
gb|ABA60884.1| nucleocapsid protein [Maize Iranian mosaic nucleo...    95   2e-16
gb|ATY73944.1| nucleocapsid protein [Maize Iranian mosaic nucleo...    94   3e-16
ref|XP_024169763.1| uncharacterized protein LOC112176178 [Rosa c...    93   5e-16
ref|NP_620496.1| nucleocapsid protein [Rice yellow stunt nucleor...    94   7e-16
dbj|BAH97109.1| nucleocapsid protein [Orchid fleck dichorhavirus]      93   7e-16
ref|YP_004927965.1| nucleocapsid protein [Potato yellow dwarf nu...    91   4e-15
dbj|BAI79326.1| nucleocapsid protein [Rice yellow stunt nucleorh...    91   6e-15
gb|ARJ54291.1| nucleocapsid protein [Potato yellow dwarf nucleor...    89   1e-14
gb|AUY61878.1| nucleocapsid protein [Physostegia chlorotic mottl...    88   3e-14
gb|AOT55656.1| nucleocapsid protein [Physostegia chlorotic mottl...    88   3e-14

>ref|YP_224078.1| N [Taro vein chlorosis nucleorhabdovirus]
 sp|Q5GA90.1|NCAP_TAVCV RecName: Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
            protein; Short=Protein N
 gb|AAV92082.1| N [Taro vein chlorosis nucleorhabdovirus]
          Length = 502

 Score =  106 bits (265), Expect = 4e-20
 Identities = 93/407 (22%), Positives = 164/407 (40%), Gaps = 9/407 (2%)
 Frame = +3

Query: 159  HFNNSDDVLDIFADLDLR---------PNLQSTVIAAEYDNDFFSQENANKTYMVNALTD 311
            + N  DDV+  ++D DL+         P+ +S +    Y     + +   K + V A  D
Sbjct: 3    YINIPDDVVSKYSD-DLKTFTQKAGEIPSSKSLIPQTAYT--IAALKTKLKFWEVTAKDD 59

Query: 312  DAILSNWRSVSEVIKTGKVSPATILQILELAVNAKSVEEDTRLLQWIPRHXXXXXXXXXX 491
              I S+W  V   I  G  S   +  + ELA N +   E   +                 
Sbjct: 60   PTIASDWAGVCTAITAGTFSATNLKTVCELAFNLRKPHETGNVF---------------- 103

Query: 492  XXVRLMTGKMASTIAKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLC 671
              +  +     S+I+  S+       T                   D+   + +A  +LC
Sbjct: 104  --IHTVPSDWTSSISTDSVDTTPIPATESDATLSTVSAAVQSGAAEDAAT-KAKAISFLC 160

Query: 672  LCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLG 851
              ++RL  K+P+  +  ITSI++ F   Y  AS T+    FT   +  I  G+ +     
Sbjct: 161  CALIRLSVKEPSHIMTAITSIRQRFGSLYGLASATLNAITFTRQQLSRIKQGIETYSLAR 220

Query: 852  QTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFL 1031
             T+ Y+V    +      +SY + RF   QH+EL G+H YK+   L   +S+ +P  + L
Sbjct: 221  GTIFYYVRYADTTYGSSDKSYGVCRFLLFQHLELEGMHIYKMILALLTEWST-VPIGLLL 279

Query: 1032 SWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLA 1211
            +W+ N  +  AV  I  II  +D      +  W Y+R ++N +F ++ + R  ++  +LA
Sbjct: 280  TWIRNPKSALAVVEIKNIITNFDK--AGVDKSWKYSRMIDNTFFLNISSRRNVYMCALLA 337

Query: 1212 YLADSQIKKERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSK 1352
             L    + +   + A   ++  ++ M  + K          E  Y K
Sbjct: 338  SLNKRHVPQGVGDYADPRNIAVIKAMDAAVKNQVAIDVTLVERIYEK 384


>ref|YP_052850.1| N [Maize mosaic nucleorhabdovirus]
 sp|Q6E0X1.1|NCAP_MMVR RecName: Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
            protein; Short=Protein N
 gb|AAT66752.1| N [Maize mosaic nucleorhabdovirus]
          Length = 447

 Score =  104 bits (260), Expect = 9e-20
 Identities = 85/394 (21%), Positives = 162/394 (41%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            S+DV D+       P+ +S +    +  D      + K + V       + S+W +++  
Sbjct: 15   SEDVKDLTQKAGSIPSSKSLIPQTAFTPD--ELRRSLKFWQVTTKVAATVASDWTNLATA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRLLQWIPRHXXXXXXXXXXXXVRLMTGKMAST 530
            +  G  S   +  + ELA N K+      +      H                T  + +T
Sbjct: 73   LTNGTFSATHLRTLCELAFNLKAPTGTGTIFI----HEIADPWKGCIDANAPDTVAIPAT 128

Query: 531  IAKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMKKDPNM 710
             +  +++      T  G                +  +++++A  +LC  ++RL  K+P+ 
Sbjct: 129  DSDVNMSTVSSGSTASG---------------TEDAEVKMKAISFLCCTLLRLSVKEPSH 173

Query: 711  FLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVATGMSK 890
             ++ I SI++ F   Y  +S T+    F  + +  I  G+ +      T+ Y+     + 
Sbjct: 174  IMQAINSIRQRFGSLYGVSSPTLNSVTFNRSQLSRIKQGIETYPSARGTVFYYTRYADAT 233

Query: 891  LNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTTIKAVK 1070
                ++ Y + RF   QH+EL G+H YK+   L   +S+ +P  + L+W+ N  +  A+ 
Sbjct: 234  HGYTTKEYGICRFLLFQHLELEGMHIYKMLLALLGEWST-VPIGLLLTWIRNPRSKLAIN 292

Query: 1071 MINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIKKEREN 1250
             I +I+++ D         W YAR +NN +F DL + R  +L  VLA L    + +    
Sbjct: 293  EIVKIVKELDKPEVDKG--WKYARMVNNTFFLDLSSRRNTYLCAVLASLNKKNVPQGSGE 350

Query: 1251 QAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSK 1352
             A   ++  ++ M +S K          E  Y K
Sbjct: 351  YADPTNIAVIKNMDQSVKSQVATDVTLIERIYEK 384


>dbj|BAX37186.1| nucleocapsid protein [Orchid fleck dichorhavirus]
          Length = 450

 Score = 97.4 bits (241), Expect = 2e-17
 Identities = 74/283 (26%), Positives = 134/283 (47%), Gaps = 19/283 (6%)
 Frame = +3

Query: 630  DSQQIEIRAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAV 809
            +S Q + RA  Y+CL +MRL  K    F+KGI  IK+ +S      S  + ++ ++    
Sbjct: 152  ESAQSKARAMVYICLSLMRLAVKPAESFMKGIHQIKQAYSVLVGEHSEFLFNYSYSEGMC 211

Query: 810  YAIADGLRSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYEL 989
              IAD       L  T+ +H A      +   + + L+RF   QHV+L G+  Y ++ ++
Sbjct: 212  RNIADMFNQCDDLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDM 271

Query: 990  DNLFSSKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYD 1169
               F+   P ++ L+WL ++   + + +I +I  +YD  + +  + W Y+R L+ G+F  
Sbjct: 272  RRHFTLLTPGQL-LTWLHDNQVSRPLSVIADINTRYDVSNGADRF-WRYSRGLDPGFFIA 329

Query: 1170 LHTSRCRFLVCVLAYL------------ADSQIKKERENQAGSMDLMELRKMSKSDKESA 1313
            L  S+C  L+  +A++            +D +  K  EN+ G          +++DK   
Sbjct: 330  LQQSKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPG--------LAAEADK--- 378

Query: 1314 IEYAKEFEEQYSKIAATSHIMNRIQ-------RGVQKRKGLST 1421
              +A EF E Y+ ++ +S     +        RG+  R+GL T
Sbjct: 379  --FATEFVEAYNGLSGSSANAGPVSRKLYNQGRGIPTRRGLFT 419


>ref|YP_001294924.1| nucleocapsid protein [Orchid fleck dichorhavirus]
 dbj|BAE93579.1| nucleocapsid protein [Orchid fleck dichorhavirus]
          Length = 450

 Score = 97.1 bits (240), Expect = 3e-17
 Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 19/283 (6%)
 Frame = +3

Query: 630  DSQQIEIRAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAV 809
            +S   + RA  Y+CL +MRL  K    F+KG+  IK+ +S      S  + ++ ++    
Sbjct: 152  ESAMSKARAMVYICLSLMRLAVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMC 211

Query: 810  YAIADGLRSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYEL 989
              IAD       L  T+ +H A      +   + + L+RF   QHV+L G+  Y ++ ++
Sbjct: 212  RNIADMFNQCDDLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDM 271

Query: 990  DNLFSSKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYD 1169
               F+   P ++ L+WL ++   + + +I +I  +YD  + S  + W Y+R L+ G+F  
Sbjct: 272  RRYFTLLTPGQL-LTWLHDNQVSRPLSVIADINTRYDVSNGSDRF-WRYSRGLDPGFFIA 329

Query: 1170 LHTSRCRFLVCVLAYL------------ADSQIKKERENQAGSMDLMELRKMSKSDKESA 1313
            L  S+C  L+  +A++            +D +  K  EN+ G          +++DK   
Sbjct: 330  LQQSKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPG--------LAAEADK--- 378

Query: 1314 IEYAKEFEEQYSKIAATSHIMNRIQ-------RGVQKRKGLST 1421
              +A EF E Y+ ++ +S     +        RG+  R+GL T
Sbjct: 379  --FATEFVEAYNGLSGSSANAGPVSRKLYNQGRGIPTRRGLFT 419


>gb|AHM10390.1| nucleocapsid protein, partial [Taro vein chlorosis nucleorhabdovirus]
          Length = 349

 Score = 95.1 bits (235), Expect = 4e-17
 Identities = 61/234 (26%), Positives = 109/234 (46%)
 Frame = +3

Query: 651  RAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGL 830
            +A  +LC  ++RL  K+P+  +  ITSI++ F   Y  +S T+    FT   +  I  G+
Sbjct: 87   KAISFLCCALIRLSVKEPSHIMTAITSIRQRFGSLYGLSSATLNAITFTRQQLSRIKQGI 146

Query: 831  RSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSK 1010
             +      T+ Y+V    +      +SY + RF   QH+EL G+H YK+   L   +S+ 
Sbjct: 147  ETYSVARGTIFYYVRYADTTYTSSDKSYGVCRFLLFQHLELEGMHIYKMILALLTEWST- 205

Query: 1011 LPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCR 1190
            +P  + L+W+ N  +  AV  I  II  +D      +  W Y+R ++N +F +  + R  
Sbjct: 206  VPIGLLLTWIRNPKSALAVTEIKNIITNFDK--AGVDKSWKYSRMIDNTFFLNTSSRRNV 263

Query: 1191 FLVCVLAYLADSQIKKERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSK 1352
            ++  +LA L    + +   + A   ++  ++ M  + K          E  Y K
Sbjct: 264  YMCALLASLNKRHVPQGVGDYADPRNIAVIKAMDAAVKNQVAIDVTLVERIYEK 317


>gb|ATY73943.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
          Length = 445

 Score = 96.3 bits (238), Expect = 5e-17
 Identities = 97/448 (21%), Positives = 181/448 (40%), Gaps = 10/448 (2%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            SDDV  +       P+ +S +   E+ +     +   K + V A+ D  +++ W  V   
Sbjct: 15   SDDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRL-LQWIPRHXXXXXXXXXXXXVRLMTGKMAS 527
            +  G  S   + ++ +LA N +   E   + +  IP                +   +  S
Sbjct: 73   LAGGTFSAQNLKELCQLAFNLRKPHEPGHVFIHNIPDSWKAYLEAATPDGTAIPATENES 132

Query: 528  TI----AKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMK 695
            T+    A  +    D T   K                         A  +L   +MRL  
Sbjct: 133  TMSTIGAAAATGSADETAPNKAA-----------------------AIAFLSCTLMRLAI 169

Query: 696  KDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVA 875
            K+P   +  +T+I+  +   Y  +S  +    F  + +  I  GL +      T+ Y+  
Sbjct: 170  KEPKHIMDAMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTR 229

Query: 876  TGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTT 1055
               S     + SY + R+   QH+EL G+H YK+   L   +++ +P ++ L+W+ N  +
Sbjct: 230  HADSTYTYTTPSYGICRYLLFQHLELEGMHIYKMLLALQTEWAT-VPMRLLLTWIRNPRS 288

Query: 1056 IKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIK 1235
              AV  I +I+  +D    + +  W YAR +NN +F +L + R  +L  VLA L    + 
Sbjct: 289  KLAVLEIVKILTNWDK--ANVDKGWKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVP 346

Query: 1236 KERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATSHIMN-----RIQRGVQ 1400
            +   + A   ++  ++ M  + K+      +  E  Y    A+S   +      + RGV+
Sbjct: 347  QGTGDYANPNNIAVIKNMDSAVKKQVSTDVQIVERIYDIFLASSGSDDAGTAFTLSRGVK 406

Query: 1401 KRKGLSTGAAPTKRTRDEGNDASAMDVE 1484
            +          T+++RDE    +AMD +
Sbjct: 407  R--------TSTQQSRDE----NAMDTD 422


>gb|ATY73945.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
          Length = 445

 Score = 96.3 bits (238), Expect = 5e-17
 Identities = 97/448 (21%), Positives = 181/448 (40%), Gaps = 10/448 (2%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            SDDV  +       P+ +S +   E+ +     +   K + V A+ D  +++ W  V   
Sbjct: 15   SDDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRL-LQWIPRHXXXXXXXXXXXXVRLMTGKMAS 527
            +  G  S   + ++ +LA N +   E   + +  IP                +   +  S
Sbjct: 73   LAGGTFSAQNLKELCQLAFNLRKPHEPGHVFIHNIPDSWKAYLEAATPDGTAIPATENES 132

Query: 528  TI----AKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMK 695
            T+    A  +    D T   K                         A  +L   +MRL  
Sbjct: 133  TMSTIGAAAATGSADETAPNKAA-----------------------AIAFLSCTLMRLAI 169

Query: 696  KDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVA 875
            K+P   +  +T+I+  +   Y  +S  +    F  + +  I  GL +      T+ Y+  
Sbjct: 170  KEPKHIMDAMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTR 229

Query: 876  TGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTT 1055
               S     + SY + R+   QH+EL G+H YK+   L   +++ +P ++ L+W+ N  +
Sbjct: 230  HADSTYTYTTPSYGICRYLLFQHLELEGMHIYKMLLALQTEWAT-VPMRLLLTWIRNPRS 288

Query: 1056 IKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIK 1235
              AV  I +I+  +D    + +  W YAR +NN +F +L + R  +L  VLA L    + 
Sbjct: 289  KLAVLEIVKILTNWDK--ANVDKGWKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVP 346

Query: 1236 KERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATSHIMN-----RIQRGVQ 1400
            +   + A   ++  ++ M  + K+      +  E  Y    A+S   +      + RGV+
Sbjct: 347  QGTGDYANPNNIAVIKNMDSAVKKQVSTDVQIVERIYDIFLASSGSDDAGTAFTLSRGVK 406

Query: 1401 KRKGLSTGAAPTKRTRDEGNDASAMDVE 1484
            +          T+++RDE    +AMD +
Sbjct: 407  R--------TSTQQSRDE----NAMDTD 422


>gb|ATY73946.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
          Length = 445

 Score = 96.3 bits (238), Expect = 5e-17
 Identities = 97/448 (21%), Positives = 181/448 (40%), Gaps = 10/448 (2%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            SDDV  +       P+ +S +   E+ +     +   K + V A+ D  +++ W  V   
Sbjct: 15   SDDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRL-LQWIPRHXXXXXXXXXXXXVRLMTGKMAS 527
            +  G  S   + ++ +LA N +   E   + +  IP                +   +  S
Sbjct: 73   LAGGTFSAQNLKELCQLAFNLRKPHEPGHVFIHNIPDSWKAYLEAATPDGTAIPATENES 132

Query: 528  TI----AKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMK 695
            T+    A  +    D T   K                         A  +L   +MRL  
Sbjct: 133  TMSTIGAAAATGSADETAPNKAA-----------------------AIAFLSCTLMRLAI 169

Query: 696  KDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVA 875
            K+P   +  +T+I+  +   Y  +S  +    F  + +  I  GL +      T+ Y+  
Sbjct: 170  KEPKHIMDAMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTR 229

Query: 876  TGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTT 1055
               S     + SY + R+   QH+EL G+H YK+   L   +++ +P ++ L+W+ N  +
Sbjct: 230  HADSTYTYTTPSYGICRYLLFQHLELEGMHIYKMLLALQTEWAT-VPMRLLLTWIRNPRS 288

Query: 1056 IKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIK 1235
              AV  I +I+  +D    + +  W YAR +NN +F +L + R  +L  VLA L    + 
Sbjct: 289  KLAVLEIVKILTNWDK--ANVDKGWKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVP 346

Query: 1236 KERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATSHIMN-----RIQRGVQ 1400
            +   + A   ++  ++ M  + K+      +  E  Y    A+S   +      + RGV+
Sbjct: 347  QGTGDYANPNNIAVIKNMDSAVKKQVSTDVQIVERIYDIFLASSGSDDAGTAFTLSRGVK 406

Query: 1401 KRKGLSTGAAPTKRTRDEGNDASAMDVE 1484
            +          T+++RDE    +AMD +
Sbjct: 407  R--------TSTQQSRDE----NAMDTD 422


>ref|YP_009444708.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
 gb|ATY38954.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
          Length = 445

 Score = 96.3 bits (238), Expect = 5e-17
 Identities = 97/448 (21%), Positives = 181/448 (40%), Gaps = 10/448 (2%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            SDDV  +       P+ +S +   E+ +     +   K + V A+ D  +++ W  V   
Sbjct: 15   SDDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRL-LQWIPRHXXXXXXXXXXXXVRLMTGKMAS 527
            +  G  S   + ++ +LA N +   E   + +  IP                +   +  S
Sbjct: 73   LAGGTFSAQNLKELCQLAFNLRKPHEPGHVFIHNIPDSWKAYLEAATPDGTAIPATENES 132

Query: 528  TI----AKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMK 695
            T+    A  +    D T   K                         A  +L   +MRL  
Sbjct: 133  TMSTIGAAAATGSADETAPNKAA-----------------------AIAFLSCTLMRLAI 169

Query: 696  KDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVA 875
            K+P   +  +T+I+  +   Y  +S  +    F  + +  I  GL +      T+ Y+  
Sbjct: 170  KEPKHIMDAMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTR 229

Query: 876  TGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTT 1055
               S     + SY + R+   QH+EL G+H YK+   L   +++ +P ++ L+W+ N  +
Sbjct: 230  HADSTYTYTTPSYGICRYLLFQHLELEGMHIYKMLLALQTEWAT-VPMRLLLTWIRNPRS 288

Query: 1056 IKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIK 1235
              AV  I +I+  +D    + +  W YAR +NN +F +L + R  +L  VLA L    + 
Sbjct: 289  KLAVLEIVKILTNWDK--ANVDKGWKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVP 346

Query: 1236 KERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATSHIMN-----RIQRGVQ 1400
            +   + A   ++  ++ M  + K+      +  E  Y    A+S   +      + RGV+
Sbjct: 347  QGTGDYANPNNIAVIKNMDSAVKKQVSTDVQIVERIYDIFLASSGSDDAGTAFTLSRGVK 406

Query: 1401 KRKGLSTGAAPTKRTRDEGNDASAMDVE 1484
            +          T+++RDE    +AMD +
Sbjct: 407  R--------TSTQQSRDE----NAMDTD 422


>gb|AGN91968.1| nucleocapsid protein [Citrus leprosis virus nuclear type]
          Length = 450

 Score = 95.1 bits (235), Expect = 1e-16
 Identities = 72/276 (26%), Positives = 130/276 (47%), Gaps = 19/276 (6%)
 Frame = +3

Query: 651  RAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGL 830
            RA  Y+CL +MRL  K    F+KG+  IK+ +S      S  + ++ ++      IAD  
Sbjct: 159  RAMVYICLSLMRLAVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMCRNIADMF 218

Query: 831  RSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSK 1010
                 L  T+ +H A      +   + + L+RF   QHV+L G+  Y ++ ++   F+  
Sbjct: 219  NQCDDLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDMRRHFTLL 278

Query: 1011 LPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCR 1190
             P ++ L+WL ++   + + +I +I  +YD  + S  + W Y+R L+ G+F  L  S+C 
Sbjct: 279  TPGQL-LTWLHDNQVSRPLSVIADINTRYDVSNGSDRF-WRYSRGLDPGFFIALQQSKCV 336

Query: 1191 FLVCVLAYL------------ADSQIKKERENQAGSMDLMELRKMSKSDKESAIEYAKEF 1334
             L+  +A++            +D +  K  EN+ G          +++DK     +A EF
Sbjct: 337  TLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPG--------LAAEADK-----FATEF 383

Query: 1335 EEQYSKIAATSHIMNRIQ-------RGVQKRKGLST 1421
             E Y+ ++ +S     +        RG+  R+GL T
Sbjct: 384  VEAYNGLSGSSANAGPVSRKLYNQGRGIPTRRGLFT 419


>gb|ABA60884.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
          Length = 493

 Score = 94.7 bits (234), Expect = 2e-16
 Identities = 87/404 (21%), Positives = 162/404 (40%), Gaps = 5/404 (1%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            SDDV  +       P+ +S +   E+ +     +   K + V A+ D  +++ W  V   
Sbjct: 15   SDDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRL-LQWIPRHXXXXXXXXXXXXVRLMTGKMAS 527
            +  G  S   + ++ +LA N +   E   + +  IP                +   +  S
Sbjct: 73   LAGGTFSAQNLKELCQLAFNLRKPHEPGHVFIHNIPDSWKAYLEAATPDGTAIPATENES 132

Query: 528  TI----AKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMK 695
            T+    A  +    D T   K                         A  +L   +MRL  
Sbjct: 133  TMSTIGAAAATGSADETAPNKAA-----------------------AIAFLSCTLMRLAI 169

Query: 696  KDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVA 875
            K+P   +  +T+I+  +   Y  +S  +    F  + +  I  GL +      T+ Y+  
Sbjct: 170  KEPKHIMDAMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTR 229

Query: 876  TGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTT 1055
               S     + SY + R+   QH+EL G+H YK+   L   +++ +P ++ L+W+ N  +
Sbjct: 230  HADSTYTYTTPSYGICRYLLFQHLELEGMHIYKMLLALQTEWAT-VPMRLLLTWIRNPRS 288

Query: 1056 IKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIK 1235
              AV  I +I+  +D    + +  W YAR +NN +F +L + R  +L  VLA L    + 
Sbjct: 289  KLAVLEIVKILTNWDK--ANVDKGWKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVP 346

Query: 1236 KERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATS 1367
            +   + A   ++  ++ M  + K+      +  E  Y    A+S
Sbjct: 347  QGTGDYANPNNIAVIKNMDSAVKKQVSPDVQIVERIYDIFLASS 390


>gb|ATY73944.1| nucleocapsid protein [Maize Iranian mosaic nucleorhabdovirus]
          Length = 445

 Score = 94.0 bits (232), Expect = 3e-16
 Identities = 95/443 (21%), Positives = 181/443 (40%), Gaps = 5/443 (1%)
 Frame = +3

Query: 171  SDDVLDIFADLDLRPNLQSTVIAAEYDNDFFSQENANKTYMVNALTDDAILSNWRSVSEV 350
            SDDV  +       P+ +S +   E+ +     +   K + V A+ D  +++ W  V   
Sbjct: 15   SDDVKSLTQKASEIPSSKSIIPQTEFSDA--ELKKTLKFWEVTAMDDATMVTQWSGVQSA 72

Query: 351  IKTGKVSPATILQILELAVNAKSVEEDTRLLQWIPRHXXXXXXXXXXXXVRLMTGKMAST 530
            +  G      + ++L+LA++ K   E        PRH                     + 
Sbjct: 73   LAGGPCPNHRLRELLQLALSLKQPHE--------PRHMVIHNIPDPWKAYLEAATPDGTA 124

Query: 531  IAKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMKKDPNM 710
            I     T+ + T +  G                ++   +  A   L   +MRL  ++P  
Sbjct: 125  IPA---TENESTMSTIGAAAATGSAD-------ETAPNKAAAMASLSCTLMRLAIREPKH 174

Query: 711  FLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVATGMSK 890
             +  +T+I+  +   Y  +S  +    F  + +  I  GL +      T+ Y+     S 
Sbjct: 175  IMDAMTNIRSRYGSLYGRSSPFLNSVTFNLSQLSRIKQGLETYAVARGTLFYYTRHADST 234

Query: 891  LNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTTIKAVK 1070
                + SY + R+   QH+EL G+H YK+   L   +++ +P ++ L+W+ N  +  AV 
Sbjct: 235  YTYTTPSYGICRYLLFQHLELEGMHIYKMLLALQTEWAT-VPMRLLLTWIRNPRSKLAVL 293

Query: 1071 MINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLADSQIKKEREN 1250
             I +I+  +D    + +  W YAR +NN +F +L + R  +L  VLA L    + +   +
Sbjct: 294  EIVKILTNWDK--ANVDKGWKYARLVNNTFFLNLSSRRNTYLCAVLAALNKKFVPQGTGD 351

Query: 1251 QAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATSHIMN-----RIQRGVQKRKGL 1415
             A   ++  ++ M  + K+      +  E  Y    A+S   +      + RGV++    
Sbjct: 352  YANPNNIAVIKNMDSAVKKQVSTDVQIVERIYDIFLASSGSDDAGTAFTLSRGVKR---- 407

Query: 1416 STGAAPTKRTRDEGNDASAMDVE 1484
                  T+++RDE    +AMD +
Sbjct: 408  ----TSTQQSRDE----NAMDTD 422


>ref|XP_024169763.1| uncharacterized protein LOC112176178 [Rosa chinensis]
 gb|PRQ18024.1| hypothetical protein RchiOBHm_Chr7g0201361 [Rosa chinensis]
          Length = 441

 Score = 93.2 bits (230), Expect = 5e-16
 Identities = 75/277 (27%), Positives = 131/277 (47%), Gaps = 9/277 (3%)
 Frame = +3

Query: 654  AAGYLCLCMMRLMKKDPNMFLKG-ITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGL 830
            A  ++C  + R   K+    LK  + S+++ +  FY+ +S     F  T   V ++    
Sbjct: 145  AHAFICAWLTRFCIKEAGDQLKNQLASLQKTYLMFYKRSSTVFDTFRPTKEWVNSLRLAF 204

Query: 831  RSNVRLGQTMVYHVATGMS--KLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFS 1004
             S  R   T+  H+  G +  K+N +S++Y+L+RF + Q++E MG+H+Y L  E+ N  S
Sbjct: 205  SSFTRCRHTLALHMGVGETYHKVN-MSRNYNLLRFCYFQNLEFMGMHSYALLVEIMNKLS 263

Query: 1005 SKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDN----EHTSTEYLWLYARYLNNGYFYDL 1172
              L   + L+WL  D    A+  I  I++ YDN    +  S E +W YAR +N  YF  +
Sbjct: 264  --LAPALVLTWLRMDGVTAAIDEIAHILQHYDNGMIPDGLSKERVWKYARLINERYFNRM 321

Query: 1173 HTSRCRFLVCVLAYLADSQIKKERENQAGSMDLMELR--KMSKSDKESAIEYAKEFEEQY 1346
             TS    LV +L+Y+       +       +++  ++   + K+  +       E +EQ 
Sbjct: 322  QTSYNPELVAMLSYIKIFLGLADEIGYRSPLNIAAIKGNNLLKASAKRKATIFIECKEQL 381

Query: 1347 SKIAATSHIMNRIQRGVQKRKGLSTGAAPTKRTRDEG 1457
              +AA + I+ +I     KRK        T +T + G
Sbjct: 382  HSVAADASIIEKI---YAKRKTADLPNFTTIQTMEGG 415


>ref|NP_620496.1| nucleocapsid protein [Rice yellow stunt nucleorhabdovirus]
 sp|Q86523.1|NCAP_RYSV RecName: Full=Nucleoprotein; Short=NP; AltName: Full=Nucleocapsid
            protein; Short=Protein N
 emb|CAA53224.1| nucleocapsid protein [Rice yellow stunt nucleorhabdovirus]
 dbj|BAA25154.1| nucleocapsid protein [Rice yellow stunt nucleorhabdovirus]
          Length = 521

 Score = 93.6 bits (231), Expect = 7e-16
 Identities = 87/416 (20%), Positives = 169/416 (40%), Gaps = 1/416 (0%)
 Frame = +3

Query: 282  KTYMVNALTDDAILSNWRSVSEVIKTGKVSPATILQILELAVNAKSVEEDTRLLQWIPRH 461
            K + + ALTD  I++ W ++   +     S   +  I+++A N + +   +  L      
Sbjct: 52   KLFQIGALTDAEIVAAWTTIKTAMGNNTFSETHMRSIVKIACNLRGITPGSTPL------ 105

Query: 462  XXXXXXXXXXXXVRLMTGKMASTIAKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQ 641
                        +       ++T A    TD  Y+ T                +  +++ 
Sbjct: 106  ------------LVTYNPPQSATWAPAPSTDAIYSGT-PVAGVIIPQNTGAGGEDTETEA 152

Query: 642  IEIRAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIA 821
             + RA  ++C  ++R + K        + ++K  +S+ Y   S T+ ++  + T    + 
Sbjct: 153  SKARAIAFICCYLLRFIVKTEEHLTNSLGNLKLQYSRLYSAQSATLSNWNPSNTWASRVK 212

Query: 822  DGLRSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLF 1001
             G  + + L  T+ Y++A+  + L   + +Y L R    QH+EL GL  YK+   L   F
Sbjct: 213  LGFDTYLTLRATVAYNIASADALLVPENVNYGLCRMLVFQHLELSGLQLYKMAMTLIAHF 272

Query: 1002 SSKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTS 1181
                P K FLSW+ +  +  ++  I +I   YDN ++ T   W YA+     Y+ +    
Sbjct: 273  KLIEPNK-FLSWIYDPLSEASIDQIYKIAVNYDNVNSKTHKHWKYAKLARGQYWLNTTVK 331

Query: 1182 RCRFLVCVLAYLADSQIKKERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAA 1361
            R +FL  +LA L        + + +    +  L  M       A   +K  E+ Y+ I +
Sbjct: 332  RNQFLAYILADLELKYGLAGKSDYSSPKRMKALSGMPVERMTEAETISKAVEQMYTAIES 391

Query: 1362 TSHIMNRIQRGVQKRKGLSTGAAPTKRTRDEGNDASAMDVEIMRRAEA-EKRKKNQ 1526
               +       + K+ G     A ++R ++  N     D +   + +  +KR K+Q
Sbjct: 392  AKRVDAGAAYRLAKKLGPPRANAHSRR-KEPNNSRQHRDKQPNSKQQGRDKRNKHQ 446


>dbj|BAH97109.1| nucleocapsid protein [Orchid fleck dichorhavirus]
          Length = 450

 Score = 92.8 bits (229), Expect = 7e-16
 Identities = 72/283 (25%), Positives = 132/283 (46%), Gaps = 19/283 (6%)
 Frame = +3

Query: 630  DSQQIEIRAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAV 809
            +S   + RA  Y+CL +MRL  K    F+KG+  IK+ +S      S  + ++ ++    
Sbjct: 152  ESAMSKARAMVYICLSLMRLAVKPAESFMKGVHQIKQAYSVLVGEHSEFLFNYSYSEGMC 211

Query: 810  YAIADGLRSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYEL 989
              IAD       L  T+ +H A      +   + + L+RF   QHV+L G+  Y ++ ++
Sbjct: 212  RNIADMFNQCDDLKATLCHHCAIADETHHTNRKRHGLLRFLILQHVDLTGMIPYGMYIDM 271

Query: 990  DNLFSSKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYD 1169
               F+   P ++ L+WL ++   + + +I +I  + D  + S  + W Y+R L+ G+F  
Sbjct: 272  RRHFTLLTPGQL-LTWLHDNQVSRPLSVIADINTRCDVSNGSDRF-WRYSRGLDPGFFIA 329

Query: 1170 LHTSRCRFLVCVLAYL------------ADSQIKKERENQAGSMDLMELRKMSKSDKESA 1313
            L  S+C  L+  +A++            +D +  K  EN+ G          +++DK   
Sbjct: 330  LQQSKCVTLIARMAHILVKGGAVAVNEYSDPRKAKSLENKPG--------LAAEADK--- 378

Query: 1314 IEYAKEFEEQYSKIAATSHIMNRIQ-------RGVQKRKGLST 1421
              +A EF E Y+ ++ +S     +        RG+  R+GL T
Sbjct: 379  --FATEFVEAYNGLSGSSANAGPVSRKLYNQGRGIPTRRGLFT 419


>ref|YP_004927965.1| nucleocapsid protein [Potato yellow dwarf nucleorhabdovirus]
 gb|ABW35154.1| nucleocapsid protein [Potato yellow dwarf nucleorhabdovirus]
 gb|ADE45268.1| nucleocapsid protein [Potato yellow dwarf nucleorhabdovirus]
          Length = 472

 Score = 90.9 bits (224), Expect = 4e-15
 Identities = 90/429 (20%), Positives = 169/429 (39%), Gaps = 4/429 (0%)
 Frame = +3

Query: 156  EHFNNSDDVLDIFADLDLRPNLQSTVIAAEY-DNDFFSQENANKTYMVNALTDDAILSNW 332
            E +N+ DD+          P     ++  EY D DF+S+      Y ++ L    +++ W
Sbjct: 20   EDWNSRDDI----------PAADGKLVQIEYSDADFWSK--LTTIYSLDDLGPSDLVAAW 67

Query: 333  RSVSEVIKTGKVSPATILQILELAVNAKSVEEDTRLL--QWIPRHXXXXXXXXXXXXVRL 506
              + E I    +S + I +I  +A + K VE+ T  +   + P                +
Sbjct: 68   TRIRESIDNSTISESIIGEIFRVAAHIKKVEDKTSRIIGSFAPPTARGVVTKTGLDTAPI 127

Query: 507  MTGKMASTIAKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMR 686
            + G+  +  A   IT ++   T +                 D+    + +A YLC+ ++R
Sbjct: 128  VFGQSVTVGA--DITVQNTAPTVR---------------TTDAGDAVV-SAPYLCMALLR 169

Query: 687  LMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVY 866
            LM K    F + +T+I+  + +FY   S  V +F     ++  ++ GL +      TM +
Sbjct: 170  LMTKPVESFNRSLTTIRTSYGRFYGMQSAEVTNFSAPLNSLQQLSTGLDTYPTCNSTMAW 229

Query: 867  HVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTN 1046
             +      + R ++++  MRF   QH E+ G+  YK+         +  P + FL  +  
Sbjct: 230  MMGFAEGSILRNNKNHGFMRFLIFQHAEMRGMQIYKMILTALAGLPAITPAQ-FLRAIEI 288

Query: 1047 DTTIKAVKMINEIIRKYDNE-HTSTEYLWLYARYLNNGYFYDLHTSRCRFLVCVLAYLAD 1223
               +KA+K + +I    D        Y W Y +Y+   YF DL   R      ++A + +
Sbjct: 289  PDAVKAIKTVMKIATTLDKPGRQDPTYWWKYGKYIEPSYFVDLSVGRNTKFAYLMACILN 348

Query: 1224 SQIKKERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAATSHIMNRIQRGVQK 1403
                         M L+   + +      A+E  K   E  +     S   + + R ++ 
Sbjct: 349  ------------EMSLINGPEYANPKNIKALESIKNNIELTNYYEGLSRNFSILYRSLET 396

Query: 1404 RKGLSTGAA 1430
              G+  G A
Sbjct: 397  ESGIGIGIA 405


>dbj|BAI79326.1| nucleocapsid protein [Rice yellow stunt nucleorhabdovirus]
          Length = 513

 Score = 90.5 bits (223), Expect = 6e-15
 Identities = 77/364 (21%), Positives = 148/364 (40%)
 Frame = +3

Query: 282  KTYMVNALTDDAILSNWRSVSEVIKTGKVSPATILQILELAVNAKSVEEDTRLLQWIPRH 461
            K + + ALTD  I++ W ++   +     S   +  I+++A N + +   +  L      
Sbjct: 52   KLFQIGALTDAEIVAAWTTIKTAMGNNTFSETHMRSIVKIACNLRGITPGSTPL------ 105

Query: 462  XXXXXXXXXXXXVRLMTGKMASTIAKQSITDEDYTKTFKGXXXXXXXXXXXXXKIVDSQQ 641
                        +       ++T A    TD  Y+ T                +  +++ 
Sbjct: 106  ------------LVTYNPPQSATWAPAPSTDAIYSGT-PVAGVIIPQNTGAGGEDTETEA 152

Query: 642  IEIRAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIA 821
             + RA  ++C  ++R + K        + ++K  +S+ Y   S T+ ++  + T    + 
Sbjct: 153  SKARAIAFICCYLLRFIVKTEEHLTNSLGNLKLQYSRLYSAQSATLSNWNPSNTWASRVK 212

Query: 822  DGLRSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLF 1001
             G  + + L  T+ Y++A+  + L   + +Y L R    QH+EL GL  YK+   L   F
Sbjct: 213  LGFDTYLTLRATVAYNIASADALLVPENVNYGLCRMLVFQHLELSGLQLYKMAMTLIAHF 272

Query: 1002 SSKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDNEHTSTEYLWLYARYLNNGYFYDLHTS 1181
                P K FLSW+ +  +  ++  I +I   YDN ++ T   W YA+     Y+ +    
Sbjct: 273  KLIEPNK-FLSWIYDPLSEASIDQIYKIAVNYDNVNSKTHKHWKYAKLARGQYWLNTTVK 331

Query: 1182 RCRFLVCVLAYLADSQIKKERENQAGSMDLMELRKMSKSDKESAIEYAKEFEEQYSKIAA 1361
            R +FL  +LA L        + + +    +  L  M       A   +K  E+ Y+ I +
Sbjct: 332  RNQFLAYILADLELKYGLAGKSDYSSPKRMKALSGMPVERMTEAETISKAVEQMYTAIES 391

Query: 1362 TSHI 1373
               +
Sbjct: 392  AKRV 395


>gb|ARJ54291.1| nucleocapsid protein [Potato yellow dwarf nucleorhabdovirus]
          Length = 473

 Score = 89.4 bits (220), Expect = 1e-14
 Identities = 74/338 (21%), Positives = 138/338 (40%), Gaps = 6/338 (1%)
 Frame = +3

Query: 213  PNLQSTVIAAEY-DNDFFSQENANKTYMVNALTDDAILSNWRSVSEVIKTGKVSPATILQ 389
            P     ++  +Y D+DF+++      Y +  +    ++++W+S+ + I    +S   I  
Sbjct: 29   PAADGKLVQIKYSDDDFWTK--LKTIYNLGEMASGDLVTSWKSIKDSIDNSTISEEIIGS 86

Query: 390  ILELAVNAKSVEEDTRLLQWIPRHXXXXXXXXXXXXVRLMTGKMASTIAKQSITDEDYTK 569
            I  +A + KSVE  T+ +                   +    K +  I + S    + T 
Sbjct: 87   IFRVAAHVKSVENKTQAII-----SNFTPPVERNIGTKSGLDKASIVIGQTSAIGSNITV 141

Query: 570  TFKGXXXXXXXXXXXXXKIVDSQQIEIRAAGYLCLCMMRLMKKDPNMFLKGITSIKRGFS 749
               G               V++    + AA YLC+ ++RLM K    F + ++++K  F 
Sbjct: 142  PAAGTEAPS----------VNADDAAV-AAPYLCMALLRLMTKPVESFSRSLSTLKTSFG 190

Query: 750  QFYETASVTVLDFEFTPTAVYAIADGLRSNVRLGQTMVYHVATGMSKLNRLSQSYHLMRF 929
            +FY   S  + +F     ++  +A GL +      T+ + +      + R ++++  +RF
Sbjct: 191  RFYGMQSSIITEFTAPVNSLQQLATGLDTYPTCSSTIAWMLGYAELNVPRNNKNHGFLRF 250

Query: 930  TFCQHVELMGLHAYKLFYELDNLFSSKLPTKVFLSWLTNDTTIKAVKMINEIIRKYDNE- 1106
               QH E+ G+  YK+         +  P + FL  +     +KA+K    I   +D   
Sbjct: 251  LIFQHAEMRGMQIYKMILTALVGLPAITPAQ-FLRAIETPDAVKAIKTALLIATTHDKPG 309

Query: 1107 HTSTEYLWLYARYLNNGYFYDLHTSR----CRFLVCVL 1208
                 Y W Y +Y+   YF DL   R      FL C+L
Sbjct: 310  RQDPTYWWKYGKYIEPAYFVDLSVGRNAKFAFFLACIL 347


>gb|AUY61878.1| nucleocapsid protein [Physostegia chlorotic mottle virus]
          Length = 476

 Score = 88.2 bits (217), Expect = 3e-14
 Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 3/273 (1%)
 Frame = +3

Query: 663  YLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNV 842
            Y+C+ ++RL+ K    F + +T++K  F +FY   S  V DF     ++  I  GL +  
Sbjct: 163  YICMALLRLIAKTVESFQRSLTTLKANFGRFYGVQSQAVNDFAPPTQSLMQIIQGLDTYT 222

Query: 843  RLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTK 1022
               QT+ + +    + + R  +++  MR+   QH E+ G+  YK+         +  P K
Sbjct: 223  AASQTLSWMLGQAETTVPRSDKNHGFMRYLIYQHAEMRGMQVYKMLLTTLAGLPAITPAK 282

Query: 1023 VFLSWLTNDTTIKAVKMINEIIRKYD-NEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLV 1199
             FL  +     +  +K I  I++K D      T+Y W YA+Y++  YF +L  SR    +
Sbjct: 283  -FLRAIEIPDAVTTIKTIVNIVQKLDLPPERVTDYHWKYAKYVDQSYFVNLSASRNAKFI 341

Query: 1200 CVLAYLADSQIKKERENQAGSMDLMELRKMSKSDKESAI--EYAKEFEEQYSKIAATSHI 1373
             ++A + + +        A   ++  L  +  +   SA   + A  F   Y  +   S  
Sbjct: 342  YLIACIMEKEGLVTGPAYANPKNIKVLEALKNNPSTSAYFEKMADNFHMVYEGLEGLS-- 399

Query: 1374 MNRIQRGVQKRKGLSTGAAPTKRTRDEGNDASA 1472
                  GV     +S    P KR   E    SA
Sbjct: 400  ----GEGVGVVMRMSNPHRPMKRPAQETATPSA 428


>gb|AOT55656.1| nucleocapsid protein [Physostegia chlorotic mottle virus]
          Length = 476

 Score = 88.2 bits (217), Expect = 3e-14
 Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 3/273 (1%)
 Frame = +3

Query: 663  YLCLCMMRLMKKDPNMFLKGITSIKRGFSQFYETASVTVLDFEFTPTAVYAIADGLRSNV 842
            Y+C+ ++RL+ K    F + +T++K  F +FY   S  V DF     ++  I  GL +  
Sbjct: 163  YICMALLRLIAKTVESFQRSLTTLKANFGRFYGVQSQAVNDFAPPTQSLMQIIQGLDTYT 222

Query: 843  RLGQTMVYHVATGMSKLNRLSQSYHLMRFTFCQHVELMGLHAYKLFYELDNLFSSKLPTK 1022
               QT+ + +    + + R  +++  MR+   QH E+ G+  YK+         +  P K
Sbjct: 223  AASQTLSWMLGQAETTVPRSDKNHGFMRYLIYQHAEMRGMQVYKMLLTTLAGLPAITPAK 282

Query: 1023 VFLSWLTNDTTIKAVKMINEIIRKYD-NEHTSTEYLWLYARYLNNGYFYDLHTSRCRFLV 1199
             FL  +     +  +K I  I++K D      T+Y W YA+Y++  YF +L  SR    +
Sbjct: 283  -FLRAIEIPDAVTTIKTIVNIVQKLDLPPERVTDYHWKYAKYVDQSYFVNLSASRNAKFI 341

Query: 1200 CVLAYLADSQIKKERENQAGSMDLMELRKMSKSDKESAI--EYAKEFEEQYSKIAATSHI 1373
             ++A + + +        A   ++  L  +  +   SA   + A  F   Y  +   S  
Sbjct: 342  YLIACIMEKEGLVTGPAYANPKNIKVLEALKNNPSTSAYFEKMADNFHMVYEGLEGLS-- 399

Query: 1374 MNRIQRGVQKRKGLSTGAAPTKRTRDEGNDASA 1472
                  GV     +S    P KR   E    SA
Sbjct: 400  ----GEGVGVVMRMSNPHRPMKRPAQETATPSA 428