BLASTX nr result
ID: Chrysanthemum22_contig00018718
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00018718
(399 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDY27413.1| BnaC03g64530D [Brassica napus] 64 3e-09
emb|CAD89518.2| RNA polymerase II second largest subunit, partia... 56 3e-07
gb|ACB70020.1| RNA polymerase II second largest subunit, partial... 53 1e-06
gb|ACB69980.1| RNA polymerase II second largest subunit, partial... 53 1e-06
ref|XP_009339281.1| PREDICTED: DNA-directed RNA polymerase II su... 56 2e-06
gb|AAT69110.1| RNA polymerase II, partial [Convolvulus sabatius ... 55 3e-06
emb|CAD89687.1| RNA polymerase II, second largest subunit, parti... 55 5e-06
gb|AAT69127.1| RNA polymerase II, partial [Erycibe hellwigii] 54 5e-06
gb|AAT69118.1| RNA polymerase II, partial [Falkia repens] 54 5e-06
gb|AAT69128.1| RNA polymerase II, partial [Erycibe glomerata] 54 5e-06
gb|AAT69104.1| RNA polymerase II, partial [Ipomoea batatas] 54 5e-06
gb|AAT69122.1| RNA polymerase II, partial [Rapona tiliifolia] 54 5e-06
gb|AAT69108.1| RNA polymerase II, partial [Merremia vitifolia] 54 6e-06
gb|AAT69107.1| RNA polymerase II, partial [Ipomoea pes-tigridis] 54 6e-06
gb|AAT69125.1| RNA polymerase II, partial [Dicranostyles mildbra... 54 6e-06
gb|ABS50284.1| RNA polymerase II, partial [Uebelinia rotundifolia] 52 6e-06
gb|AAT69115.1| RNA polymerase II, partial [Seddera hirsuta] 54 6e-06
emb|CAD91515.1| RNA polymerase II second largest subunit, partia... 55 6e-06
gb|AAS86834.1| RNA polymerase II second largest subunit, partial... 55 6e-06
gb|ACP41872.1| RNA polymerase II, partial [Heliosperma alpestre]... 52 6e-06
>emb|CDY27413.1| BnaC03g64530D [Brassica napus]
Length = 624
Score = 64.3 bits (155), Expect = 3e-09
Identities = 41/88 (46%), Positives = 51/88 (57%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTVV*IVFIS 252
+ I+ SSID GF + +F YRDEEKKMGTL+KEDFG DR NT+V
Sbjct: 410 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLIKEDFGRPDRGNTLV------ 456
Query: 253 SLYLFKIYTEANFDPYLLKDMRHGSYLK 336
+L I++ F LL+ MRHGSY K
Sbjct: 457 -RHLRFIFSVLLFVKILLQGMRHGSYEK 483
>emb|CAD89518.2| RNA polymerase II second largest subunit, partial [Tephrosia
purpurea]
Length = 423
Score = 56.2 bits (134), Expect(2) = 3e-07
Identities = 38/88 (43%), Positives = 44/88 (50%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTVV*IVFIS 252
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+V
Sbjct: 180 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTMV------ 226
Query: 253 SLYLFKIYTEANFDPYLLKDMRHGSYLK 336
+ MRHGSY K
Sbjct: 227 ------------------RGMRHGSYDK 236
Score = 25.8 bits (55), Expect(2) = 3e-07
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 335 SLMYSRRDHSTSLCH 379
SL Y+RRDHS SL H
Sbjct: 271 SLRYTRRDHSISLRH 285
>gb|ACB70020.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
Length = 91
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = +1
Query: 91 SSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 1 SSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 40
>gb|ACB69980.1| RNA polymerase II second largest subunit, partial [Melaleuca
acacioides]
gb|ACB69981.1| RNA polymerase II second largest subunit, partial [Melaleuca
acacioides]
gb|ACB69982.1| RNA polymerase II second largest subunit, partial [Melaleuca
acacioides]
gb|ACB69983.1| RNA polymerase II second largest subunit, partial [Melaleuca
cornucopiae]
gb|ACB69984.1| RNA polymerase II second largest subunit, partial [Melaleuca
glomerata]
gb|ACB69985.1| RNA polymerase II second largest subunit, partial [Melaleuca
glomerata]
gb|ACB69986.1| RNA polymerase II second largest subunit, partial [Melaleuca
glomerata]
gb|ACB69987.1| RNA polymerase II second largest subunit, partial [Melaleuca
arcana]
gb|ACB69988.1| RNA polymerase II second largest subunit, partial [Melaleuca
arcana]
gb|ACB69989.1| RNA polymerase II second largest subunit, partial [Melaleuca
arcana]
gb|ACB69990.1| RNA polymerase II second largest subunit, partial [Melaleuca
argentea]
gb|ACB69991.1| RNA polymerase II second largest subunit, partial [Melaleuca
argentea]
gb|ACB69992.1| RNA polymerase II second largest subunit, partial [Melaleuca
argentea]
gb|ACB69993.1| RNA polymerase II second largest subunit, partial [Melaleuca
argentea]
gb|ACB69994.1| RNA polymerase II second largest subunit, partial [Melaleuca
argentea]
gb|ACB69995.1| RNA polymerase II second largest subunit, partial [Melaleuca
cajuputi]
gb|ACB69996.1| RNA polymerase II second largest subunit, partial [Melaleuca
leucadendra]
gb|ACB69997.1| RNA polymerase II second largest subunit, partial [Melaleuca
leucadendra]
gb|ACB69998.1| RNA polymerase II second largest subunit, partial [Melaleuca
leucadendra]
gb|ACB69999.1| RNA polymerase II second largest subunit, partial [Melaleuca
leucadendra]
gb|ACB70000.1| RNA polymerase II second largest subunit, partial [Melaleuca
nervosa]
gb|ACB70001.1| RNA polymerase II second largest subunit, partial [Melaleuca
nervosa]
gb|ACB70002.1| RNA polymerase II second largest subunit, partial [Melaleuca
nervosa]
gb|ACB70003.1| RNA polymerase II second largest subunit, partial [Melaleuca
nervosa]
gb|ACB70004.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70005.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70006.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70007.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70008.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70009.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70010.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70011.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70012.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70013.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70014.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70015.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70016.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70017.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70018.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70019.1| RNA polymerase II second largest subunit, partial [Melaleuca
quinquenervia]
gb|ACB70021.1| RNA polymerase II second largest subunit, partial [Melaleuca
viridiflora]
gb|ACB70022.1| RNA polymerase II second largest subunit, partial [Melaleuca
viridiflora]
gb|ACB70023.1| RNA polymerase II second largest subunit, partial [Melaleuca
viridiflora]
Length = 92
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = +1
Query: 91 SSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 1 SSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 40
>ref|XP_009339281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Pyrus
x bretschneideri]
Length = 1193
Score = 56.2 bits (134), Expect = 2e-06
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SS+D GF + +FL + YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 801 SVIMNQSSVDRGFFRSLFLRY-------YRDEEKKMGTLVKEDFGRPDRANTM 846
>gb|AAT69110.1| RNA polymerase II, partial [Convolvulus sabatius subsp.
mauritanicus]
Length = 219
Score = 54.7 bits (130), Expect = 3e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 6 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGCPDRANTM 51
>emb|CAD89687.1| RNA polymerase II, second largest subunit, partial [Ilex x
meserveae]
Length = 322
Score = 54.7 bits (130), Expect = 5e-06
Identities = 31/53 (58%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + IF YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 66 SVIMNQSSIDRGFFRSIFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 111
>gb|AAT69127.1| RNA polymerase II, partial [Erycibe hellwigii]
Length = 210
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 5 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 50
>gb|AAT69118.1| RNA polymerase II, partial [Falkia repens]
Length = 210
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 17 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 62
>gb|AAT69128.1| RNA polymerase II, partial [Erycibe glomerata]
Length = 211
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 14 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 59
>gb|AAT69104.1| RNA polymerase II, partial [Ipomoea batatas]
Length = 211
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 4 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 49
>gb|AAT69122.1| RNA polymerase II, partial [Rapona tiliifolia]
Length = 212
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 6 SVIMNHSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 51
>gb|AAT69108.1| RNA polymerase II, partial [Merremia vitifolia]
Length = 213
Score = 53.9 bits (128), Expect = 6e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 8 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 53
>gb|AAT69107.1| RNA polymerase II, partial [Ipomoea pes-tigridis]
Length = 215
Score = 53.9 bits (128), Expect = 6e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 11 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 56
>gb|AAT69125.1| RNA polymerase II, partial [Dicranostyles mildbraediana]
Length = 215
Score = 53.9 bits (128), Expect = 6e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 17 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 62
>gb|ABS50284.1| RNA polymerase II, partial [Uebelinia rotundifolia]
Length = 124
Score = 52.4 bits (124), Expect = 6e-06
Identities = 28/53 (52%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTL+KEDFG DR+NT+
Sbjct: 29 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLIKEDFGRPDRSNTM 74
>gb|AAT69115.1| RNA polymerase II, partial [Seddera hirsuta]
Length = 219
Score = 53.9 bits (128), Expect = 6e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 12 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 57
>emb|CAD91515.1| RNA polymerase II second largest subunit, partial [Hedera helix]
Length = 541
Score = 54.7 bits (130), Expect = 6e-06
Identities = 31/53 (58%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + IF YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 285 SVIMNQSSIDRGFFRSIFF-------RSYRDEEKKMGTLVKEDFGRPDRANTM 330
>gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia
japonica]
Length = 559
Score = 54.7 bits (130), Expect = 6e-06
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTLVKEDFG DRANT+
Sbjct: 304 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLVKEDFGCPDRANTM 349
>gb|ACP41872.1| RNA polymerase II, partial [Heliosperma alpestre]
gb|ACP41874.1| RNA polymerase II, partial [Heliosperma alpestre]
Length = 125
Score = 52.4 bits (124), Expect = 6e-06
Identities = 28/53 (52%), Positives = 35/53 (66%)
Frame = +1
Query: 73 NAILAISSIDGGFLQIIFLPFTQVIHELYRDEEKKMGTLVKEDFGVLDRANTV 231
+ I+ SSID GF + +F YRDEEKKMGTL+KEDFG DR+NT+
Sbjct: 17 SVIMNQSSIDRGFFRSLFF-------RSYRDEEKKMGTLIKEDFGRPDRSNTM 62