BLASTX nr result
ID: Chrysanthemum22_contig00017729
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum22_contig00017729
(3774 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera] 867 0.0
emb|CAN74229.1| hypothetical protein VITISV_000584 [Vitis vinifera] 828 0.0
gb|KZV23217.1| Cysteine-rich RLK (receptor-like protein kinase) ... 830 0.0
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera] 842 0.0
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo... 827 0.0
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo... 829 0.0
gb|PRQ29719.1| putative RNA-directed DNA polymerase [Rosa chinen... 813 0.0
gb|PNX95813.1| retrovirus-related Pol polyprotein from transposo... 810 0.0
ref|XP_024196177.1| uncharacterized protein LOC112199378 [Rosa c... 830 0.0
gb|PNY12226.1| retrovirus-related Pol polyprotein from transposo... 804 0.0
dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subt... 799 0.0
gb|PRQ38882.1| putative RNA-directed DNA polymerase [Rosa chinen... 813 0.0
gb|OMO88956.1| Integrase, catalytic core [Corchorus capsularis] 789 0.0
gb|KYP42321.1| Copia protein [Cajanus cajan] 789 0.0
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 773 0.0
dbj|GAU15708.1| hypothetical protein TSUD_307180 [Trifolium subt... 786 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 784 0.0
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 780 0.0
gb|PNX93614.1| retrovirus-related Pol polyprotein from transposo... 782 0.0
dbj|GAU38852.1| hypothetical protein TSUD_154140 [Trifolium subt... 784 0.0
>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
Length = 1461
Score = 867 bits (2239), Expect = 0.0
Identities = 491/1197 (41%), Positives = 665/1197 (55%), Gaps = 39/1197 (3%)
Frame = +2
Query: 233 RRSKFFCTNCRVWGHCLERCFKVH--PV------INESTPDVPVSQKNS----PNVVVFN 376
+++ C+ C H +E+C+ +H P+ N P+ S N+ N V
Sbjct: 292 QKTPLHCSYCDRDYHSIEKCYYLHGFPIGHKLHGKNVKPPNQRHSNANNVKVETNKAVET 351
Query: 377 QAQM--------------DQLYAMMSQYKLAPQ----DGTGIDLSAAYLAGKRFCFLSSH 502
+A++ +QL AM+ + + TGI++S++ + H
Sbjct: 352 EAKLLPTNDGPRLTTEEYNQLMAMIRKNNGGNSQHFANATGINMSSSKIIPN-----CPH 406
Query: 503 LDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKN 682
+ W+IDSGATDH+T + LD L K + +PNG +A + +GS+ + HI L +
Sbjct: 407 SNMCWIIDSGATDHVTSSAEL-LDPKNLPKTTTISLPNGGQAHIESIGSLHVTPHIKLDD 465
Query: 683 VFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFVGTSDK 862
V VP FQ NLLSV K+ + F CV+ T R+ I LG LY++
Sbjct: 466 VLKVPQFQVNLLSVSKLTRALQCIVMFFFDFCVVQDATTRKTIGLGKQHNGLYYLAQDQN 525
Query: 863 TATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHCTRSNPSF------ICNTCPK 1024
A WH RLGH + + + NP +C+ CP
Sbjct: 526 PALA------YAIHKHSDLWHQRLGHPSSGPLQVL-----AKVNPKIYFDSKHVCDICPL 574
Query: 1025 ARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATK 1204
A+ R+SFPSS I + A F+LIH DIWGP+ +H+G YFLTIVDD +R TW HL++ K
Sbjct: 575 AKQTRLSFPSSFISSHAPFDLIHCDIWGPHRINSHSGAXYFLTIVDDHTRYTWIHLMSFK 634
Query: 1205 GNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQN 1384
L +FI+++E F +K +R+DNG E + ++ KGI + SC TPQQN
Sbjct: 635 SETQGILQSFISWVETQFNRCIKTLRTDNGTEISSMK--QYLDTKGINYHHSCAYTPQQN 692
Query: 1385 GVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKA 1564
GVVERKH+HLL RAL FQANLP+ +WG+SI TA +LINR P+ +L +K+PY++L NK
Sbjct: 693 GVVERKHRHLLNVGRALRFQANLPLKFWGESIQTACYLINRLPTPLLSHKSPYQLLXNKL 752
Query: 1565 PSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDV 1744
PSY H+R+FGCLCY + L KF+ RA C+F+GYP G+K Y+ DL T + S DV
Sbjct: 753 PSYHHLRTFGCLCYATNLLPTH-KFDQRARRCIFVGYPLGQKGYRVYDLXTNKFFSSXDV 811
Query: 1745 VFHEQHYPFHYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSESISDASNTSPLQDVXX 1924
VFHE +PFH P+ V LPL S+ P T T+P PL
Sbjct: 812 VFHEHIFPFHTNPQEEQHDVVVLPLPQTSYE--PITTETTKPQAD----DQPPPLLSSLE 865
Query: 1925 XXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGSKSTTPRH 2104
I PP P T A + S + RH
Sbjct: 866 STSNERTLXLDTIVSPP--PPTTRRSDRIKQPNVHLRNFHLYHTAKVASSQSSSLSGTRH 923
Query: 2105 -WCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEAC 2281
+S++ L ++ F +T EP +Y +A +P W EAM E+ AL+ N TW
Sbjct: 924 PLTRYISYAQLSPKYRNFVCAITTLVEPTTYEQAVLDPKWQEAMAAELHALEQNHTWTLT 983
Query: 2282 DLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVRS 2461
LP G + +G +WVYKIK SDG++ER+K RLV +G QREG+DY +TFSPV K+ TVR
Sbjct: 984 PLPYGHRPIGCKWVYKIKYNSDGTVERYKARLVAKGFTQREGIDYKETFSPVAKLTTVRC 1043
Query: 2462 ILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPDNK--VCRLRKSLYGLKQA 2635
+LAIAA + W +HQMDV NAFLHGDL EEVYM++PLG VCRL KSLYGLKQA
Sbjct: 1044 LLAIAAVRHWSLHQMDVQNAFLHGDLLEEVYMQLPLGFRQQGETPMVCRLNKSLYGLKQA 1103
Query: 2636 SRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKA 2815
SR WF+K SA +Q GF QS+ DYSLF K T V +YVDD+++TG+D I+ LK
Sbjct: 1104 SRSWFRKFSATIQQDGFHQSRADYSLFTKISGNSFTAVLIYVDDMIITGNDENVIAALKE 1163
Query: 2816 FLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQHM 2995
LH +F IKDLG L YFLG+EV +GI ++QRK+T ++L + G L AKP TP+ ++
Sbjct: 1164 SLHTKFRIKDLGQLRYFLGIEVARSTDGISISQRKYTLDILDEAGLLGAKPLSTPMEENN 1223
Query: 2996 KFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLH 3175
K LK+ S YR L+G+L +LT TRP+++++V LSQF+Q P++ HL VHHLL
Sbjct: 1224 KLLPTVGDLLKNPSTYRRLVGQLIYLTITRPEISYSVHILSQFMQEPRKPHLHAVHHLLR 1283
Query: 3176 YLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXXX 3355
YLKG GQG+ L L + D+DWA C I+RRSVTGY I G+ ISW
Sbjct: 1284 YLKGAPGQGLYFPAKGNLLLRGFCDADWARCSITRRSVTGYCIFLXGAXISWKTKKQTTV 1343
Query: 3356 XXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERTK 3535
LTWL LL++L V +P L CD+++ALHIA NPV+HERTK
Sbjct: 1344 SRSSXESEYRAMASITCELTWLRYLLDDLKVEHSQPAKLFCDSKAALHIAANPVYHERTK 1403
Query: 3536 HIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLGMSKSHPP 3706
HIEIDCH R+++ G I +++P+ QLAD+ TK L S+ F LLSK G+ H P
Sbjct: 1404 HIEIDCHVVRERIQSGAIVTAHVPSSCQLADLFTKPLNSSIFHSLLSKFGVLDIHAP 1460
>emb|CAN74229.1| hypothetical protein VITISV_000584 [Vitis vinifera]
Length = 1039
Score = 828 bits (2138), Expect = 0.0
Identities = 452/1068 (42%), Positives = 602/1068 (56%), Gaps = 4/1068 (0%)
Frame = +2
Query: 515 WVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVFHV 694
W+IDSGATDH+T + LD +L K + +P+G +A + +GS+ + HI L +V V
Sbjct: 3 WIIDSGATDHVTSSAEL-LDPKILPKTTTISLPDGGQAHIESIGSLHVTPHIKLDDVLKV 61
Query: 695 PDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFVGTSDKTATV 874
P FQ NLLSV K+ + F + CV+ T R+ LG LY++ A
Sbjct: 62 PQFQVNLLSVSKLTRALQCIVMFXSDFCVVQDATTRKTXGLGKQHNGLYYLAQDQNPALA 121
Query: 875 PXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHCT-RSNPSFICNTCPKARMNRISFP 1051
WH RLGH + + ++ + +C+ P A+ R+SFP
Sbjct: 122 ------YAIHKHSDLWHQRLGHPSSGPLQVLAKVNXEIYFDSKHVCDIXPLAKQTRLSFP 175
Query: 1052 SSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKGNAFQTLTA 1231
SS I + A F+LIH DIWGP+ +H+G RYFLTIVDD +R TW HL++ K L +
Sbjct: 176 SSFISSHAPFDLIHCDIWGPHRINSHSGARYFLTIVDDHTRYTWIHLMSFKSETQGILQS 235
Query: 1232 FIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQNGVVERKHKH 1411
FI+++E F +K +R+DNG E + ++ KGI + SC TPQQNGVVERKH+H
Sbjct: 236 FISWVETQFNRCIKTLRTDNGTEISSMK--QYLDTKGINYHHSCAYTPQQNGVVERKHRH 293
Query: 1412 LLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKAPSYEHIRSF 1591
LL RAL FQANLP+ +WG+SI TA +LINR P+ +L +K+PY++L NK PSY H+R+F
Sbjct: 294 LLNVGRALRFQANLPLKFWGESIQTACYLINRLPTPLLSHKSPYQLLXNKLPSYHHLRTF 353
Query: 1592 GCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVVFHEQHYPF 1771
GCLCY + L KF+ RA C+F+GYP G+K Y+ DL T + S DVVFHE +PF
Sbjct: 354 GCLCYATNLLPTH-KFDQRARRCIFVGYPLGQKGYRVYDLETNKFFSSXDVVFHEHIFPF 412
Query: 1772 HYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSESISDASNTSPLQDVXXXXXXXXXXX 1951
H P+ V LPL S+ P T T+P PL
Sbjct: 413 HTNPQEEQHDVVVLPLPQTSYE--PITTETTKPQAD----DQPPPLLSSLESTSNERTLD 466
Query: 1952 XXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGSKSTTPRH-WCNLVSFS 2128
I PP P T A + S + RH +S++
Sbjct: 467 LDTIVSPP--PPATRRSDRIKQPNVXLRNFHLYHTAKVXSSQSSSLSGTRHPLTRYISYA 524
Query: 2129 SLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKAL 2308
L ++ F +T EP +Y +A +P W EAM E+ AL+ N TW LP G + +
Sbjct: 525 QLSPKYRNFVCAITTLVEPTTYEQAVLDPKWQEAMAAELHALEQNHTWTLTPLPSGHRPI 584
Query: 2309 GNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKR 2488
G +WVYKIK SDG++ER+K RLV +G QREG+DY +TFSPV K+ TVR +LAIAA +
Sbjct: 585 GCKWVYKIKYNSDGTVERYKARLVAKGFTQREGIDYKETFSPVAKLTTVRCLLAIAAVRH 644
Query: 2489 WQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPDN--KVCRLRKSLYGLKQASRQWFQKLS 2662
W +HQMDV NAFLHGDL EEVYM++P G VCR KSLYGLKQASR WF K S
Sbjct: 645 WSLHQMDVQNAFLHGDLLEEVYMQLPPGFXRQGETPMVCRXNKSLYGLKQASRSWFXKFS 704
Query: 2663 AALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIK 2842
A +Q GF QS+ DYSLF K T V +YVDD+++ G+D I+ LK LH +F IK
Sbjct: 705 ATIQQDGFXQSRADYSLFTKISGNSFTXVLIYVDDMIIXGNDENVIAXLKESLHTKFRIK 764
Query: 2843 DLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPY 3022
DLG L YFLG+EV + T + + G L AKP +TP+ ++ K
Sbjct: 765 DLGQLRYFLGIEV-----------ARSTDD---EAGLLGAKPLLTPMEENNKLLPTVGDL 810
Query: 3023 LKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQG 3202
LK+ S YR L+G+L +LT TRP++++++ LSQF+Q P++ HL VHHLL YLKG GQG
Sbjct: 811 LKNPSIYRRLVGQLIYLTITRPEISYSIHILSQFMQEPRKPHLHAVHHLLRYLKGALGQG 870
Query: 3203 ILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXX 3382
+ L L + D+DWA C I+RRSVTGY I G + ISW
Sbjct: 871 LYFPAKGNLLLRGFCDADWARCSITRRSVTGYCIFLGEALISWKTKKQTTVSRSSAESEY 930
Query: 3383 XXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFT 3562
LTWL LL++L V +P L CD+++ALHIA NPV+HERTKHIEIDCH
Sbjct: 931 QAMASITCELTWLKYLLDDLKVEHSQPAKLFCDSKAALHIAANPVYHERTKHIEIDCHVV 990
Query: 3563 RDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLGMSKSHPP 3706
R+++ G I ++ P+ QLAD+ TK L S+ F LL K G H P
Sbjct: 991 RERIQSGXIVTAHXPSSCQLADLFTKPLNSSIFHSLLXKFGXLDIHAP 1038
>gb|KZV23217.1| Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras
hygrometricum]
Length = 1406
Score = 830 bits (2145), Expect = 0.0
Identities = 469/1214 (38%), Positives = 661/1214 (54%), Gaps = 68/1214 (5%)
Frame = +2
Query: 251 CTNCRVWGHCLERCFKV--HPVINESTPDVP-------------------VSQKNSPNVV 367
C NC + GH + C+K+ +P ++ P Q+ S +
Sbjct: 207 CENCNIPGHTKDVCYKLVGYPQGHKLHKKFPQGKFSKGQARYPQQFSAHNTHQETSVDTP 266
Query: 368 VFNQAQMDQLYAMMSQYKLAPQDGTGIDLSAAYLAGKRFCFLSSH--LDNQWVIDSGATD 541
+F Q +Q+ ++ + G+ A AG ++ +W++DSGA
Sbjct: 267 MFTPTQYEQIIKLL-------EHGSSPIQPAVNFAGNAHNATTTPDGSSQEWILDSGANA 319
Query: 542 HMTPHLHMFLDYTVLDKPC-YVDMPNGQKARVHHVGSVRLNEHIILKNVFHVPDFQFNLL 718
H+T + + + + V +PNGQ + GS+ + L+NV HVPDF+FNLL
Sbjct: 320 HITGNSKNLQNLQLCNSSIGSVRLPNGQFTHILSTGSLSIPSFCTLQNVLHVPDFKFNLL 379
Query: 719 SVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFVGTSDK------------ 862
S+ + ++ S+ F C + + + +G + LY++
Sbjct: 380 SISRFTKDHHCSVVFYPDFCFFQDLSTGKIMGIGKLYNGLYYLAGIPSRIPSKLQTRNFL 439
Query: 863 TATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHCTRSNPSFICNTCPKARMNRI 1042
+++ WH R GH R+ + + T + + C CP ++ R
Sbjct: 440 SSSRLSCNSSVCNNIDINKWHQRFGHASVSRLQHLPFI--TDKSLTSHCPICPLSKQTRT 497
Query: 1043 SFPSSSIKTSAI-FELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKGNAFQ 1219
FP +A F L+H+DIWGPY TH G +YFLT+VDDFSR TW LL K + F
Sbjct: 498 PFPIKDHSHAAHPFSLLHMDIWGPYKIATHTGAKYFLTVVDDFSRCTWVFLLQFKSDTFS 557
Query: 1220 TLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQNGVVER 1399
+ F ++ NHFKT ++ IR+DN ++F + ++ GIIHQ+SC TPQQNG+VER
Sbjct: 558 VIKDFFTFVSNHFKTRIQTIRTDNALDFFNNNCKSLFNSLGIIHQSSCPYTPQQNGLVER 617
Query: 1400 KHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKAPSYEH 1579
KH+H+L ARA+ FQA+LP YWG+ +L A ++INR P+ +L KTPYE L +K PSY+H
Sbjct: 618 KHRHILNVARAIKFQASLPDQYWGECVLHAAYIINRTPTPLLSYKTPYEALFSKPPSYDH 677
Query: 1580 IRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVVFHEQ 1759
R FGCLCY S + KF++RA CVFLGYP +K YK LD T QI +RDVVFHE
Sbjct: 678 FRVFGCLCYASNINPSH-KFDARARACVFLGYPLHQKGYKLLDTKTNQIFTARDVVFHEN 736
Query: 1760 HYPF--HYLPKWSDSIVFPLPLDDLSHN-FIPAV------TSPTEPSESISDASNTSPLQ 1912
+PF ++ + +P L + H F+P T +PS A
Sbjct: 737 IFPFLNQHISSTAPHQSWPTSLVNHEHELFVPNTLVHTQHTIDLQPSADPPSADQPQSSV 796
Query: 1913 DVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAH------LKDF 2074
D+ P+P P D+P H + D+
Sbjct: 797 DLPSADQ----------PQPSADPPSADHPPADQPPVPSCSPATKQTSRHRTPPRWMNDY 846
Query: 2075 VGSKSTTPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDAL 2254
V S S+TP +S + ++ +F S +EP+SY EA+ +P W +AM EI AL
Sbjct: 847 VCSHSSTPYGLEKYLSHKYISPAYSSFLTAISQSTEPKSYKEAATDPNWRDAMAAEIAAL 906
Query: 2255 QANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSP 2434
+AN TW +PPGKKA+G RWVYKIK +SDG+++R+K RLV +G Q+ G+DY DTFSP
Sbjct: 907 EANNTWTIVQIPPGKKAIGCRWVYKIKYRSDGTIDRYKARLVAKGYTQQYGIDYQDTFSP 966
Query: 2435 VVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGI-PNPDNKVCRLRK 2611
V K+ TVR I+ IAA+K W +HQMDV NAFL GDL E++YM +P G N C+L K
Sbjct: 967 VAKIVTVRCIITIAAAKAWPLHQMDVTNAFLQGDLDEDIYMTIPPGFGKQSPNLACKLLK 1026
Query: 2612 SLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDP 2791
SLYGLKQASRQW K L G+ QS++D+S+F K ++TI+ VYVDDI++TG+D
Sbjct: 1027 SLYGLKQASRQWNTKFCQVLAQAGYKQSQHDHSMFSKQDGPRITILIVYVDDIVITGNDN 1086
Query: 2792 TSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPA 2971
SISQLK LH+ IKDLG L YFLG+EV NGI L QRK+ ELL+D G KP
Sbjct: 1087 DSISQLKLHLHKHLHIKDLGPLKYFLGIEVARSKNGICLHQRKYILELLSDAGMTGCKPF 1146
Query: 2972 VTPLPQHMKF---------------SDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAV 3106
TP+ QH++ S P L D S+Y+ LIG+L +LT TRPD+++ +
Sbjct: 1147 DTPMEQHIRLTTNDYDAHNTAVTEKSLTLDPLLTDPSSYQRLIGRLIYLTITRPDISYTI 1206
Query: 3107 QTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRS 3286
Q LSQF+ +P+Q H+ +L Y+K + G GI L S L L AY DSDWA+CP++R+S
Sbjct: 1207 QHLSQFMHSPKQSHMAAAIRVLGYIKKSPGLGIFLPASNDLQLKAYCDSDWASCPMTRKS 1266
Query: 3287 VTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPV 3466
VTGY+I G + ISW + WL LL ++G+H P
Sbjct: 1267 VTGYLIQLGPASISWKTKQQNTVSRSSAEAEYRAMASASCEVIWLRGLLLDMGLHINNPT 1326
Query: 3467 TLHCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVL 3646
L CDNQ+ALHIA NP++HERTKHIE+DCHF R+K+ +I ++ T++Q AD+LTK L
Sbjct: 1327 HLFCDNQAALHIAMNPMYHERTKHIELDCHFIREKIQRKIITTFHISTRDQPADILTKAL 1386
Query: 3647 PSNQFQQLLSKLGM 3688
S++ Q L+SKLG+
Sbjct: 1387 GSDKHQFLMSKLGL 1400
>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
Length = 1813
Score = 842 bits (2174), Expect = 0.0
Identities = 486/1191 (40%), Positives = 648/1191 (54%), Gaps = 40/1191 (3%)
Frame = +2
Query: 233 RRSKFFCTNCRVWGHCLERCFKVHPVINESTPDV----PVSQKNSPNVVVFNQAQMDQLY 400
R KF C C GH +RC ++ N T P + N P+ +M
Sbjct: 550 RTLKFHCKFCDKRGHTEDRC-RLKNGSNNKTGQFRGQRPFGRGNQPSANATESQEMSD-- 606
Query: 401 AMMSQYKLAPQDGTGIDLSAAYLAGKRFCFLSSHLDNQWVIDSGATDHMTPHLHMFLDYT 580
S Q T + A + +S + + +GATDH+ H+ +F D
Sbjct: 607 ---STSSSTVQGFTTEQIQQLAQAIRALNHSNSGNIDAYANAAGATDHIVSHMSLFTDLK 663
Query: 581 VLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVFHVPDFQFNLLSVYKVLHQYNASIT 760
+ V++PNG + + H G+V + + LK+V VP F NL+S K+ N I
Sbjct: 664 PSNVTT-VNLPNGVASPITHTGTVIFDSQLTLKDVLCVPSFNLNLISASKLAKDQNCYII 722
Query: 761 FTTVSCVLNVPTLREPIVLGNVRQNLYFVGTSDKTATVPXXXXXXXXXXXXXXWHCRLGH 940
F C+L + I G R LY++ S + V WH RLGH
Sbjct: 723 FFPDYCILQDLVSGKMIGSGKQRGGLYYMHPSTNKSVV------FHVSQPSDLWHLRLGH 776
Query: 941 LPFDRIHCIDSL----HCTRSNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWG 1108
F R + L H N C CP+A+ R+ FP SSI T F L+H D+WG
Sbjct: 777 PSFSRFKLLSRLLPDIHKEIGNH---CPICPQAKQTRLPFPKSSITTKFPFSLLHCDVWG 833
Query: 1109 PYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSD 1288
P+ P H G RYFLTIVDDFSR TW L+ K LT F+ +++ F T V+ +R D
Sbjct: 834 PHKIPAHTGSRYFLTIVDDFSRCTWIFLMHHKSETQSLLTNFVQFVKTQFHTDVQTVRMD 893
Query: 1289 NGIEFKDTRANEFYSKKGIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYW 1468
NG EF R F KGI QTSC TPQQNGVVERKH+H+L AR+L FQ+N+P+ +W
Sbjct: 894 NGTEFIPLRI--FLQNKGIELQTSCIYTPQQNGVVERKHRHILNVARSLMFQSNVPLEFW 951
Query: 1469 GDSILTATHLINRFPSSVLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESR 1648
G+ +LTA +LINR P+ +L NK+P+EVL N+ PS H+R FGC CYV+ + H + KF+ R
Sbjct: 952 GECVLTAVYLINRIPTPLLSNKSPFEVLYNRPPSLTHLRVFGCECYVTNV-HPKQKFDPR 1010
Query: 1649 ASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVVFHEQHYPFH----YLPKWSDSIVFPLP 1816
AS CVFLGYP GKK YK LDL T++I SRDV F E +PFH + S S+ PLP
Sbjct: 1011 ASICVFLGYPHGKKGYKVLDLQTQKISVSRDVFFRENIFPFHSSSSQSQQHSPSLPLPLP 1070
Query: 1817 LDDLSH-------NFIPAVTSPTEPSESISD--ASNTS---PLQDVXXXXXXXXXXXXXX 1960
+ S F P+ T P +S +SNT PL
Sbjct: 1071 ISFDSTPQPISLPRFSPSSTPPLSHHNPVSSPPSSNTDVPEPLSHESVASPLPSSPSPSS 1130
Query: 1961 IPEPPNSAPVTDN---PSXXXXXXXXXXXXXXXXXAHLKDFV------------GSKSTT 2095
+ PP+ V N PS A D+V S+ T
Sbjct: 1131 LSSPPSVPLVPSNTSAPSPTHEPPLRRSTRHIQPPAWHHDYVMSAQLNHSSTQSSSRQGT 1190
Query: 2096 PRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWE 2275
+ +SF H+AF + +EP S+ +A +P W +AM+ E+ AL+ N TWE
Sbjct: 1191 RYPLSSHLSFFRFSPHHRAFLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWE 1250
Query: 2276 ACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATV 2455
LPPG K +G RWVYKIK SDG++ER+K RLV +G Q G+DY +TFSP K+ T+
Sbjct: 1251 MVPLPPGHKPIGCRWVYKIKYHSDGTIERYKARLVAKGYTQVAGIDYQETFSPTAKLTTL 1310
Query: 2456 RSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNP-DNKVCRLRKSLYGLKQ 2632
R +L +AAS+ W IHQ+DV+NAFLHG+L EEVYM P G+ +N VCRLRKS+YGLKQ
Sbjct: 1311 RCLLTVAASRNWYIHQLDVHNAFLHGNLQEEVYMTPPPGLRRQGENLVCRLRKSIYGLKQ 1370
Query: 2633 ASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLK 2812
ASR WF +A ++ G+ QSK DYSLF K+ + T + +YVDDIL+TG+D I LK
Sbjct: 1371 ASRNWFSTFTATVKSAGYIQSKADYSLFTKSQGNKFTAILIYVDDILLTGNDLHEIKMLK 1430
Query: 2813 AFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQH 2992
L + F IKDLG L YFLG+E GI ++QRK+T ++L DTG KP P+ Q+
Sbjct: 1431 THLLKRFFIKDLGELKYFLGIEFSRSKKGIFMSQRKYTLDILQDTGLTGVKPEKFPMEQN 1490
Query: 2993 MKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLL 3172
+K ++ L D S YR L+G+L +LT TRPD+ ++V+TLSQF+ P++ H + +L
Sbjct: 1491 LKLTNEDGELLHDPSRYRRLVGRLIYLTVTRPDIVYSVRTLSQFMNTPRKPHWEAALRVL 1550
Query: 3173 HYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXX 3352
Y+KG+ GQG+ L L+L A+ DSDW C +SRRSV+GY + G S ISW
Sbjct: 1551 RYIKGSPGQGLFLPSENNLTLSAFCDSDWGGCRMSRRSVSGYCVFLGSSLISWKSKKQTN 1610
Query: 3353 XXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERT 3532
LTWL +L++L V KP L CDNQ+AL+IA NPVFHERT
Sbjct: 1611 VSRSSAEAEYRAMANTCLELTWLRYILKDLKVELDKPAPLFCDNQAALYIAANPVFHERT 1670
Query: 3533 KHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLG 3685
KHIEIDCH R+K+ G+I Y+ T+ QLADV TK L QF+ L +KLG
Sbjct: 1671 KHIEIDCHIVREKLQAGVIRPCYVSTKMQLADVFTKALGREQFEFLCTKLG 1721
>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1352
Score = 827 bits (2137), Expect = 0.0
Identities = 452/1086 (41%), Positives = 627/1086 (57%), Gaps = 19/1086 (1%)
Frame = +2
Query: 491 LSSH--LDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNE 664
+S+H + WVIDSGATDH++ L F Y ++ P V +P GQ H G V+ +
Sbjct: 298 ISTHTQISTSWVIDSGATDHVSSSLSNFFTYNSIN-PITVKLPTGQHVLATHAGVVKFTD 356
Query: 665 HIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYF 844
L +V +P+F++NL+S+ K++ + + F + C++ +E I +V LY
Sbjct: 357 TFYLTDVLFIPEFKYNLISISKLVSSLDVQLIFYSTHCLIQDVNTKEKIGTVDVEVGLYT 416
Query: 845 VGTSD-KTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLH-CTRSNPSFICNTC 1018
+ T+ + + + WH RLGHLP+D++H + + C SN F CNTC
Sbjct: 417 MTTAVVQPSILSAIYNPEWSIQNIDLWHFRLGHLPYDKLHSMKQYYPCLYSNKHFTCNTC 476
Query: 1019 PKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLA 1198
A+ ++SFP S F L+H+DIWGP S+ + +G RYFLTIVDD +R TW L+A
Sbjct: 477 HHAKQKKLSFPLSHSHALQSFALLHIDIWGPCSKTSIHGHRYFLTIVDDHTRYTWVFLMA 536
Query: 1199 TKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQ 1378
+K + +T FI++IEN F T VK+IR+DNG EF N ++ KGIIHQT+C TP+
Sbjct: 537 SKADTCNCVTNFISHIENQFATRVKVIRTDNGAEFS---MNNYFDSKGIIHQTTCIETPE 593
Query: 1379 QNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMN 1558
QN +VERKH+HLL RAL FQ+NLP ++W +++ AT++IN P+ L++ +P+E L
Sbjct: 594 QNRIVERKHQHLLNVTRALLFQSNLPPTFWNFALMHATYIINCIPTPFLQHTSPFENLNG 653
Query: 1559 KAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSR 1738
K +R FGCLCYVSTLK R K + RASPCVFLG+ K Y +L TR I SR
Sbjct: 654 KPCDITTLRVFGCLCYVSTLKAHRTKLDPRASPCVFLGFQPHTKGYLTFNLNTRSIEVSR 713
Query: 1739 DVVFHEQHYPFHYLPKWSDSIVFPLPLDDLS------HNFIPAVTSPTEPSESISDASNT 1900
+VVF+E H+P+ S S LP S +NF P S + P S+S
Sbjct: 714 NVVFYENHFPYFTQDTQSASSTPSLPTPFTSNPMIHDYNFYPPSPS-SHPPHSLSS---- 768
Query: 1901 SPLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDF-- 2074
PE P S+P+ P+ ++L+D+
Sbjct: 769 ---------------------PESPTSSPIPSRPTRSRHPP-----------SYLRDYHM 796
Query: 2075 ----VGSKSTTPRHWC--NLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMN 2236
G S+ + +++S++ L + F + S +EP+SY EAS++ W++AM
Sbjct: 797 TFTSTGPSSSPGIRYPLDSVISYNRLSHPFRHFIMSISLLTEPKSYAEASKSDCWIKAMT 856
Query: 2237 KEIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDY 2416
EI AL+AN TW LPP K A+G +W+YK+K +DGS+ER K RLV +G Q EG+D+
Sbjct: 857 DEITALEANNTWTVTSLPPHKTAIGCKWIYKVKHHADGSVERHKARLVAKGYTQLEGLDF 916
Query: 2417 FDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPD-NK 2593
DTF+PV K+ TV +L++AA W + Q+D+NNAFLHGDL+EEVYM +P G+ +
Sbjct: 917 LDTFAPVAKLTTVHLLLSLAAIHNWFLKQLDINNAFLHGDLNEEVYMHLPPGLTTTTPGQ 976
Query: 2594 VCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDIL 2773
VC+L +SLYGLKQASRQW+ +LS + QGF S D+SLFLK + T + VYVDDI+
Sbjct: 977 VCKLNRSLYGLKQASRQWYARLSTFIMQQGFHHSSADHSLFLKFTNSACTALLVYVDDIV 1036
Query: 2774 VTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGF 2953
+ G+D T I Q+ A LH+ F IKDLG L YFLGLEV + I L QRK+T ++L+DTG
Sbjct: 1037 LAGNDLTEIHQITALLHKTFKIKDLGDLTYFLGLEVARNSIEIHLCQRKYTLDILSDTGM 1096
Query: 2954 LDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQN 3133
L P+ T + S L D SAYR LIG+L +LT+T PD+T AVQ LSQF
Sbjct: 1097 LACCPSSTLMDYKAALSSDTGTPLTDPSAYRQLIGRLIYLTNTHPDITHAVQHLSQFASK 1156
Query: 3134 PQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFG 3313
P H +L YLK G+GI L+ + L L ++SDSDWA C +RRS+TG+ + G
Sbjct: 1157 PTTYHQHAAFRILRYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCMDTRRSITGFAVYLG 1216
Query: 3314 GSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSA 3493
S ISW + WL LLE+ + ++P L+CDNQS
Sbjct: 1217 HSLISWKSKKQATVSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQFIRPALLYCDNQSV 1276
Query: 3494 LHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLL 3673
L IA N VFHERTKHIEIDCH R+KV GL+ L + + QLAD+ TK L ++F +L
Sbjct: 1277 LQIACNQVFHERTKHIEIDCHLVREKVSNGLLKLLPVSSSAQLADIYTKALSPSRFNELN 1336
Query: 3674 SKLGMS 3691
SKLGMS
Sbjct: 1337 SKLGMS 1342
>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1427
Score = 829 bits (2141), Expect = 0.0
Identities = 470/1226 (38%), Positives = 669/1226 (54%), Gaps = 48/1226 (3%)
Frame = +2
Query: 173 NWYKVLVSNDGVIFGIAPNGRRSKF-----FCTNCRVWGHCLERCFKVHP---------- 307
NW G G G R F CT C H ++ C+ H
Sbjct: 203 NWRSSSNGRGGSSRGRGRTGGRGSFTNAGKVCTFCGKENHTIDSCYFKHGFPPNFKFKDK 262
Query: 308 -------VINESTPDVPVSQ----KNSPNVVVFNQAQMDQLYAMMSQYKL-APQDG---- 439
I+ P S+ +N + F D L M+ + KL +P+
Sbjct: 263 GNTTSINTISSKAPSTQASEISRKQNKESTSNFTHEDYDHLIDMLKRAKLQSPEHSINQL 322
Query: 440 ----TGIDLSAAYLAGKRFCFLSSHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVD 607
T +S++ L + H D W++D+GATDH+ L+ F Y +D P +V
Sbjct: 323 VHQTTTESVSSSNLQQNQPGNPLEHTD--WILDTGATDHVCNSLYFFTKYHPID-PVHVK 379
Query: 608 MPNGQKARVHHVGSVRLNEHIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLN 787
+PNG + G++ +E L +V ++P+F N++SV K+ + + F SC++
Sbjct: 380 LPNGNTSTAQFSGTIIFSEKFFLNDVLYIPNFHLNIISVQKIAASLDYELMFNKNSCIIQ 439
Query: 788 VPTLREPIVLGNVRQNLYFVGTSDKTATVPXXXXXXXXXXXXXX-------WHCRLGHLP 946
T ++ I L V+ +LY + K ++ WH RLGH
Sbjct: 440 DLTSKKTIGLAEVKNHLYILQRPSKDNSISACKSNSVLNAQPKGTTSSFDLWHYRLGHPS 499
Query: 947 FDRIHCIDSLH-CTRSNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRP 1123
+ + L N + C+ C + R+ FP+S+ K+ + F+L+H+DIWGP + P
Sbjct: 500 HVVLQTVKRLFPYVTYNKNITCDYCHFGKQARLPFPTSTTKSLSCFDLVHMDIWGPLAIP 559
Query: 1124 THNGFRYFLTIVDDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEF 1303
+ +G +YFLTIVDD+SR TW + + +KG + FI+Y++ F +K++RSDNG+EF
Sbjct: 560 SIHGHKYFLTIVDDYSRHTWIYFMKSKGETRNLIQNFISYVQTQFTKHIKVLRSDNGVEF 619
Query: 1304 KDTRANEFYSKKGIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSIL 1483
++ Y+ GI+HQTSC TPQQN VVERKH+H+L R L F +N+P S+W ++
Sbjct: 620 A---MDQLYATYGIVHQTSCVETPQQNSVVERKHRHILNITRTLLFHSNVPKSFWCYAVG 676
Query: 1484 TATHLINRFPSSVLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCV 1663
A HLINR PS VL N +PY++L +K P+ ++ FG LCY STL GR K +A+ V
Sbjct: 677 HAIHLINRLPSPVLNNSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLAPKATKGV 736
Query: 1664 FLGYPFGKKAYKCLDLTTRQIVCSRDVVFHEQHYPFHYLPKWSDSIVFPLPLDDLSHNFI 1843
+LG G K + LDL TR I SR+VVF+E +PF K S I +D +F+
Sbjct: 737 YLGVKQGTKGFLVLDLLTRSIFVSRNVVFYEHIFPF--FEKGSTVITNSQQQNDACFDFL 794
Query: 1844 PAVTSPTEPSESISDASNTSPLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXX 2023
+ S + P +I ++S L D+ P T +PS
Sbjct: 795 -YLDSSSHPVTTIDNSS----LLDIDSAHYENDLNDIDESAHPSE----TSSPSQLRKST 845
Query: 2024 XXXXXXXXXXXAHLKDFVGSKSTTPRH----WCNLVSFSSLPVSHQAFSVHASTFSEPRS 2191
H +G +H ++S+ SL S+ + + +T EP +
Sbjct: 846 RHKCSPAYLKDYHCNLLIGVPPPEDKHIRYPLNTVLSYDSLSASYSRYVLSITTHVEPHT 905
Query: 2192 YNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKG 2371
+N+A +N WVEAM E+DAL+ N TW LPPGK +G++WVYKIK KSDGS+ER+K
Sbjct: 906 FNQAVKNKVWVEAMQAELDALEHNKTWTIMPLPPGKTPIGSKWVYKIKYKSDGSIERYKA 965
Query: 2372 RLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEV 2551
RLVV+G Q +G+DYFDTF+PV K++TVR +LAIA+ + W++HQ+D+NNAFLHGDL E+V
Sbjct: 966 RLVVKGYTQIQGLDYFDTFAPVAKLSTVRMLLAIASCQHWELHQLDINNAFLHGDLLEDV 1025
Query: 2552 YMKMPLGIP-NPDNKVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTV 2728
YM++P G+ + N VC+L KSLYGLKQASRQWF KLS+ L + QS++D+SLF K
Sbjct: 1026 YMEIPQGLNIDKPNHVCKLNKSLYGLKQASRQWFAKLSSFLLSLHYKQSQHDHSLFTKHH 1085
Query: 2729 DGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIIL 2908
T++ +YVDD+++ G+D I+ +K L +F IKDLG L YFLGLE+ GI L
Sbjct: 1086 GTHFTVILIYVDDLIIAGTDSEEINHIKQSLDVKFKIKDLGPLRYFLGLEIARSHLGISL 1145
Query: 2909 TQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRP 3088
+QRK+T +LL +T FL KP +TP+ + + S +D + YR LIGKL +L TRP
Sbjct: 1146 SQRKYTLDLLDETSFLAGKPVLTPIIKGTRLSHTTDSPYEDPAGYRRLIGKLLYLITTRP 1205
Query: 3089 DLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAAC 3268
D++++VQ LSQFL PQQ H +L YLKG GQG+ L L A+SDSDWA+C
Sbjct: 1206 DISYSVQQLSQFLSCPQQSHYQAAIRVLRYLKGNPGQGLFYPADSPLQLKAFSDSDWASC 1265
Query: 3269 PISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGV 3448
P +RRS++GY I G S ISW + WL LL++ V
Sbjct: 1266 PDTRRSLSGYSIFLGNSLISWKCKKQSTISRSSSEAEYRALAATACEIQWLTYLLQDFSV 1325
Query: 3449 HGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLAD 3628
P L+CDNQSA HIA N VFHERTKHIEIDCH R+K+ GL HL + + +QLAD
Sbjct: 1326 PFTTPALLYCDNQSARHIASNAVFHERTKHIEIDCHLVREKLQAGLFHLLPIASSHQLAD 1385
Query: 3629 VLTKVLPSNQFQQLLSKLGMSKSHPP 3706
+LTK L + FQ LLSKLG+ + P
Sbjct: 1386 ILTKPLDPSPFQYLLSKLGVINIYSP 1411
>gb|PRQ29719.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1080
Score = 813 bits (2100), Expect = 0.0
Identities = 456/1080 (42%), Positives = 613/1080 (56%), Gaps = 2/1080 (0%)
Frame = +2
Query: 467 LAGKRFCFLSSHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVG 646
L+GK F + D W++DSGA+DH+ + + + V +P+G V H+G
Sbjct: 58 LSGKAFALSQDNKDVTWILDSGASDHIVCNSAFLTSFQPVHNRT-VKLPDGTTLHVSHIG 116
Query: 647 SVRLNEHIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNV 826
+V + H +L NV VP F NL+S+ K+ F C + I G
Sbjct: 117 TVSFSSHFVLHNVLCVPLFYLNLISINKLAFDSVYITIFLKQVCFIQDLQSGRMIGTGTE 176
Query: 827 RQNLYFVGTSDK-TATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHCTRSNPSF 1003
+ LY + K T V WH RLGH P ++ + +S +
Sbjct: 177 SEGLYCLNLPKKGTCNV-------VNTKTHDLWHQRLGH-PSSKVSLLFPFLQNKSCNAS 228
Query: 1004 ICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTW 1183
C+ CP A+ R FP S +++ F+LIHVDIWG Y P+ +G +YFLTIVDD SRSTW
Sbjct: 229 PCSICPLAKQTRRPFPLSVSSSNSCFDLIHVDIWGGYHVPSLSGAQYFLTIVDDHSRSTW 288
Query: 1184 THLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSC 1363
+L+ K L F+ +EN F VKI+RSDNG EFK T +FYS KGI+HQTSC
Sbjct: 289 VYLMHHKSETQALLIHFVNLVENQFGKRVKIVRSDNGPEFKCT---QFYSSKGILHQTSC 345
Query: 1364 NATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPY 1543
TPQQNGV ERKH+HLL ARAL FQ+NLP +WGD+ILTA +LINR P+ +L+ KTP+
Sbjct: 346 INTPQQNGVAERKHRHLLNIARALLFQSNLPKPFWGDAILTAAYLINRTPTPILQGKTPF 405
Query: 1544 EVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQ 1723
E L +K+P+Y H+R FGC C+VST KF+ R++ C+FLGYP G+K YK L ++
Sbjct: 406 ETLFHKSPNYSHLRVFGCRCFVSTHPLRPSKFDPRSTECIFLGYPHGQKGYKVYSLKDKK 465
Query: 1724 IVCSRDVVFHEQHYPFHYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSESISDASNTS 1903
++ SRDV+F E +P Y K S S P+V+SPT P + + S
Sbjct: 466 MLVSRDVIFFETEFP--YQSKLSTSS--------------PSVSSPTPPQYHV----DIS 505
Query: 1904 PLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGS 2083
QD +P+P S+ T P+ + V +
Sbjct: 506 LSQDAIPHSS---------LPQPRRSSRPTRTPTTLQDFHIEAALPSHTAPSSSTSEV-T 555
Query: 2084 KSTTPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQAN 2263
TP +++S+ L +H+AF+V+ + EPRS+++A P W EAM+KEI ALQ N
Sbjct: 556 HLGTPHSIAHVLSYDRLSPTHKAFTVNITLEKEPRSFSQAVLEPRWREAMDKEIQALQEN 615
Query: 2264 GTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVK 2443
TW LPP KK +G +WVYKIK DG++ER+K RLV +G Q G+DY +TF+PV K
Sbjct: 616 KTWSLVPLPPDKKPIGCKWVYKIKHNPDGTVERYKARLVAKGYSQVAGIDYRETFAPVAK 675
Query: 2444 MATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNP-DNKVCRLRKSLY 2620
+ TVR +L++AA + W +HQ+DVNNAFL+GDL E+VYMK+P G +N+VC+L KS+Y
Sbjct: 676 LTTVRVLLSLAALQGWHLHQLDVNNAFLNGDLYEDVYMKLPPGFGRKGENRVCKLHKSVY 735
Query: 2621 GLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSI 2800
GLKQASRQWF KLS AL+ GF QS +DYSLF++ G+ T + VYVDD+++ G++ I
Sbjct: 736 GLKQASRQWFLKLSGALKAAGFNQSWSDYSLFVRHTQGRFTTLLVYVDDVILAGNNLQDI 795
Query: 2801 SQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTP 2980
+ K FL F +KD+G L YFLG+EV GI+L QRK+ E+L D GFL AKP+ P
Sbjct: 796 METKHFLASHFKLKDMGQLRYFLGIEVARSKQGIVLCQRKYALEVLEDAGFLGAKPSRFP 855
Query: 2981 LPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGV 3160
+ Q++ + LKD S YR L+G+L +LT TRPDL +A
Sbjct: 856 IDQNLVLTQGEGVVLKDASQYRRLVGRLIYLTVTRPDLVYA------------------- 896
Query: 3161 HHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXX 3340
T GQGILL + QL + AY D+DWA C +RRS TGY I G +PISW
Sbjct: 897 ---------TPGQGILLPSTGQLEIKAYCDADWARCKDTRRSTTGYCIFLGNAPISWKTK 947
Query: 3341 XXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVF 3520
+TWL LL +L V V L CDNQ+++HIA NPVF
Sbjct: 948 KQGTVSRSSAEAEYRSMATTCCEITWLRSLLRDLNVQHAHAVKLFCDNQASIHIASNPVF 1007
Query: 3521 HERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLGMSKSH 3700
HERTKHIEIDCH R+KV GL+ ++ T+ Q AD+ TK L S QF LLSKLG+ H
Sbjct: 1008 HERTKHIEIDCHVVREKVQRGLVKTKHIRTKEQPADLFTKRLGSKQFSALLSKLGVINIH 1067
>gb|PNX95813.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1351
Score = 810 bits (2092), Expect = 0.0
Identities = 466/1218 (38%), Positives = 658/1218 (54%), Gaps = 62/1218 (5%)
Frame = +2
Query: 221 APNGRRSKFFCTNCRVWGHCLERCFKVHP-------------------------VINEST 325
A + +S CT C H ++ CFK H + E T
Sbjct: 165 AKSSGKSDKMCTYCHKNNHIVDNCFKKHGFPPGYRFRDGTIAGSKSQSQASSNCIEAEET 224
Query: 326 PDVPVSQKNSPNVVVFNQAQMDQLYAMMSQYKLAPQDGTGIDLSA-----AYLAGKRFCF 490
+ ++++++ V F+ + L A++ +GT + + A +
Sbjct: 225 VNKRITEQDNRVVASFSHEEFQALKALLKSNSRPVGEGTSSQIHSFSRNIASSSSNDKQG 284
Query: 491 LSSHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHI 670
++S N W++DSGATDH+ L +F+++ + V +PNG VG +++ I
Sbjct: 285 MNSSQSNTWILDSGATDHVCNSLQLFINHRQIPS-LLVKLPNGNYISTTMVGDIKVTAQI 343
Query: 671 ILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFV- 847
L +V +P+F +NL+S+ K+ + + FT C++ L++ I G + LY++
Sbjct: 344 TLHDVLFIPNFHYNLISISKIAQDLDCNFVFTDNVCLIQTK-LQKMIGSGKLIDGLYYLE 402
Query: 848 -----------GTSDKTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLH--CTR 988
G S + +P WH R GH R+ + ++ T
Sbjct: 403 GTCFTQSSEKFGKSCNSVAIPKSAL----------WHFRFGHTSQHRLEQMQQMYPTITI 452
Query: 989 SNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDF 1168
+ F C+ C A+ ++ + S+ + + EL+H+DIWGP+S PT +G RYFLTIVDDF
Sbjct: 453 NKDDFCCDVCHLAKQKKLPYTLSNSRATHCLELLHMDIWGPFSTPTPHGHRYFLTIVDDF 512
Query: 1169 SRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGII 1348
SR TW LL K + FI +EN F + VKI+RSDNG EF FY+ KGI+
Sbjct: 513 SRFTWIVLLKGKFETASKIKDFINLVENQFGSKVKILRSDNGPEFLSLTT--FYASKGIL 570
Query: 1349 HQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLK 1528
HQTSC ATPQQNG VERKH+ +L ARAL Q++LP +YWG ++ A ++NR PSS +K
Sbjct: 571 HQTSCVATPQQNGRVERKHQCILNIARALLLQSHLPPAYWGYAVFHAVFIMNRVPSSAIK 630
Query: 1529 NKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLD 1708
+ P++VL K P + FG LCYVS+ + KF++RA CVFLGY G K Y LD
Sbjct: 631 GRIPFDVLYGKLPELSQLIVFGSLCYVSSEDTHKSKFDNRARKCVFLGYRPGMKGYVALD 690
Query: 1709 LTTRQIVCSRDVVFHEQHYPFHY---LPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSES 1879
L I+ SR V+F E P+ P W L S++ P TSP E +
Sbjct: 691 LHNHAIITSRHVIFEETVLPYPVNTTTPSWE--------LHSPSNSSSPLSTSPIELTND 742
Query: 1880 ISDASNTSPLQDVXXXXXXXXXXXXXXIPEPP-----NSAPV------TDNPSXXXXXXX 2026
+ TS Q IP P ++ PV D+P
Sbjct: 743 HETTNQTSNDQ----------------IPSPSTEPFIDNTPVISDHDIVDSPITPSSPPL 786
Query: 2027 XXXXXXXXXXAHLKDFVGSKST--TPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNE 2200
+ L D+ + T TP N +S S L ++ ++ + T EP SY E
Sbjct: 787 RKSTRLKKPPSRLMDYNCNAVTHKTPYPITNFISHSHLSPTYSSYCLSLLTDQEPNSYAE 846
Query: 2201 ASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLV 2380
ASQ+ WV+AM E++AL N TW+ DLP G K +G++WVYKIK K+DGS++R+K RLV
Sbjct: 847 ASQSEWWVKAMQSELNALANNHTWKIVDLPAGVKPIGSKWVYKIKRKADGSIDRYKARLV 906
Query: 2381 VQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMK 2560
+G +Q EG+DYF+TFSPV KM T+R++LAIA+ +RW +HQ+DV+NAFLHGDL E+VYMK
Sbjct: 907 AKGYNQIEGIDYFETFSPVAKMTTIRTVLAIASIQRWHVHQLDVDNAFLHGDLDEDVYMK 966
Query: 2561 MPLGIPN-PDNKVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQ 2737
+P G+ NK C+L KSLYGLKQASRQW+ KLS L G+TQ +D +LF K+ +
Sbjct: 967 IPQGLEGIQPNKTCKLIKSLYGLKQASRQWYAKLSHFLTTIGYTQMPSDPTLFTKSNQSE 1026
Query: 2738 MTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQR 2917
T + VYVDDI++ G+ I K+ LH+ F IKD+G L +FLGLEV + + GI L QR
Sbjct: 1027 FTSLLVYVDDIVLAGNCLAEIQVTKSKLHEAFGIKDIGVLKFFLGLEVAHSEQGITLCQR 1086
Query: 2918 KFTQELLADTGFLDAKPAVTPL-PQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDL 3094
K+ +LL +TG L KP+ P+ P H D +P+ ++ + YR+L+GKL +LT TRPD+
Sbjct: 1087 KYCLDLLNETGNLGCKPSSIPMDPSHRPHHDDSTPH-ENITEYRALVGKLLYLTSTRPDI 1145
Query: 3095 TFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPI 3274
F VQ LSQFL P +H H +L YLKG G G+ + L L +SD+DW CP
Sbjct: 1146 AFPVQQLSQFLDAPTSLHFKAAHKVLRYLKGNPGTGLFFPRNSSLQLSGFSDADWGGCPD 1205
Query: 3275 SRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHG 3454
SRRS+TGY G S + W L WL LL +L +H
Sbjct: 1206 SRRSITGYCFFIGQSLVCWKSKKQLTVSKSSSEAEYRALASTTCELQWLTYLLRDLQIHT 1265
Query: 3455 LKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVL 3634
K TL+CD+QSALHIA NPVFHERTKHI+IDCH R+K+ GL+ L + NQ+AD+
Sbjct: 1266 DKLSTLYCDSQSALHIASNPVFHERTKHIDIDCHIVREKLQGGLMKLLPITGYNQIADIF 1325
Query: 3635 TKVLPSNQFQQLLSKLGM 3688
TK L F +L +KLG+
Sbjct: 1326 TKALHPANFHRLFAKLGL 1343
>ref|XP_024196177.1| uncharacterized protein LOC112199378 [Rosa chinensis]
Length = 2337
Score = 830 bits (2143), Expect = 0.0
Identities = 469/1125 (41%), Positives = 625/1125 (55%), Gaps = 45/1125 (4%)
Frame = +2
Query: 455 SAAYLAGKRFCFLSSHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARV 634
S+ +L R+ SH D + SGATDH+T + + V +PNG+ A +
Sbjct: 615 SSDFLKHMRYLLRISH-DMERFRYSGATDHITSIPNSLSNLVPTPSFPPVKLPNGEHAPI 673
Query: 635 HHVGSVRLNEHIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIV 814
H +G + ++ L +V P F+ +L++ ++ I
Sbjct: 674 HSIGDFSFHSNLRLNDVLCAPSFK-DLVT--------------------------KKIIG 706
Query: 815 LGNVRQNLYFVGTSDKTATVPXXXXXXXXXXXXXX-WHCRLGHLPFDRIHC----IDSLH 979
LG LY++ + AT P WH RLGH +R+ I +
Sbjct: 707 LGREHNGLYYL--TPNLATKPSHISSANHAVMSTTLWHRRLGHPSPNRLQLLAKTIPGVS 764
Query: 980 CTRSNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIV 1159
C+ +C+ CP A+ R+SF S+I T+ F LIH DIWGP+ +H+G RYFLTIV
Sbjct: 765 CSADK---VCDVCPLAKQTRLSFNLSTISTTKPFALIHCDIWGPHKIASHSGARYFLTIV 821
Query: 1160 DDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKK 1339
DDFSR TW +L+ K L +F A+ E F V+ IRSDNG EF R+ F+
Sbjct: 822 DDFSRCTWLYLMHAKSETQNLLKSFFAFTETQFNQKVQHIRSDNGSEFLSMRS--FFQAN 879
Query: 1340 GIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSS 1519
GIIHQ SC TPQQNGVVERKH+H++ ARAL FQANLP+ +W + +LT +LINR P+
Sbjct: 880 GIIHQHSCVYTPQQNGVVERKHRHIITIARALLFQANLPLEFWAECVLTVVYLINRLPAP 939
Query: 1520 VLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYK 1699
+L K+P+E + + P Y HIR FGCL Y + + H + KF+ RA C+F+GYPFG+KAYK
Sbjct: 940 LLSGKSPFEKIFQRVPQYSHIRVFGCLAYATNV-HPKQKFDPRAHKCIFVGYPFGQKAYK 998
Query: 1700 CLDLTTRQIVCSRDVVFHEQHYPFHYLPKWSDSIVFPL-PLDDLSHNFIPAVTSPTEP-- 1870
DLTT++ SRDVVFHE +P+ DS L P D + N IP P EP
Sbjct: 999 LYDLTTKKFFTSRDVVFHEDIFPYK-----QDSPNLSLQPHDAVLPNVIPENDIPQEPLS 1053
Query: 1871 SESISDASNTSPLQD------VXXXXXXXXXXXXXXIPEPPNSAPVTDN----------- 1999
+ +S +T P D V P +S+P DN
Sbjct: 1054 ASRVSPIEHTLPQVDNSLSPNVLSDHETHPNDQTPPSPSSHHSSPPLDNSSPSSPSSPPV 1113
Query: 2000 PSXXXXXXXXXXXXXXXXXAHLKDFVGSKSTTPRH------W-----------CNLVSFS 2128
P+ LKD+V S P W N +S+
Sbjct: 1114 PNEDTVPALRRSERVRKPNVKLKDYVCSHVVLPTQEDSSSLWPFPNKGTRYPLSNYISYH 1173
Query: 2129 SLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKAL 2308
SH++F + + EP S+ EA +NP W EAM EI AL+AN TW LPPGK+ +
Sbjct: 1174 RFSSSHRSFIANITRSVEPNSFAEAIKNPQWQEAMTSEIQALEANNTWSLTPLPPGKEPI 1233
Query: 2309 GNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKR 2488
G +WVYKIK SDG++ER+K RLV +G Q EGVDY +TFSP K+ T R +LAIAAS+
Sbjct: 1234 GCKWVYKIKYNSDGTIERYKARLVAKGYTQVEGVDYCETFSPTAKLTTFRCLLAIAASRN 1293
Query: 2489 WQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNP-DNKVCRLRKSLYGLKQASRQWFQKLSA 2665
W +HQMDV NAFLHGDL EEVYM P G +N VCRL KSLYGLKQASR WF K S
Sbjct: 1294 WSLHQMDVQNAFLHGDLHEEVYMLPPPGFSRQGENLVCRLNKSLYGLKQASRNWFSKFSN 1353
Query: 2666 ALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKD 2845
A+Q G+ QSK DYSLF + V T V +YVDDI++TG+DP +I LKAFLH+EF IKD
Sbjct: 1354 AIQKAGYRQSKADYSLFTRVVGNSFTAVLIYVDDIVITGNDPKAIELLKAFLHKEFRIKD 1413
Query: 2846 LGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYL 3025
LG L YFLG+EV GI ++QRK+ ++L D G A+P P+ Q++K + L
Sbjct: 1414 LGNLKYFLGIEVSRSKKGIFISQRKYALDILLDAGLTGARPCHFPMEQNLKLTPTNGEIL 1473
Query: 3026 KDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGI 3205
KD + YR LIGKL +LT TRPD+ ++V+ LSQF+ P++ H++ +LH++KG G+GI
Sbjct: 1474 KDPTRYRRLIGKLIYLTVTRPDIVYSVRILSQFMNQPRKPHMEAAMRVLHFIKGNPGRGI 1533
Query: 3206 LLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXX 3385
L+L AY DSDWA+CP +R+S TGY + G S ISW
Sbjct: 1534 FFPSENDLALKAYCDSDWASCPTTRKSTTGYSVFLGNSLISWKSKKQSNVACSSAEAEYR 1593
Query: 3386 XXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTR 3565
LTWL +L++ + KP +L+CDNQ+ALHIA NPVFHERTKHIEIDCH R
Sbjct: 1594 AMAMTCRELTWLRYILQDFEIIQDKPASLYCDNQAALHIAANPVFHERTKHIEIDCHVVR 1653
Query: 3566 DKVMEGLIHLSYLPTQNQLADVLTKV--LPSNQFQQLLSKLGMSK 3694
+K+ GLI Y+P+ Q+AD+ TK L + + + LL +G K
Sbjct: 1654 EKLQAGLISTRYVPSSLQIADIFTKYLDLSNTKIEALLKSIGKLK 1698
>gb|PNY12226.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1464
Score = 804 bits (2076), Expect = 0.0
Identities = 468/1208 (38%), Positives = 663/1208 (54%), Gaps = 56/1208 (4%)
Frame = +2
Query: 251 CTNCRVWGHCLERCFKVHP---------------------VINESTPDVPVSQKNSPNVV 367
CT C GH +E C++ + + + S+ PV K + N +
Sbjct: 275 CTFCGKKGHVIEICYRKNGYPPGFKFRDGSSPPKTAMASYIASTSSEAKPVEAK-ATNSL 333
Query: 368 VFNQAQMDQLYAMMSQYKLAPQDGTGIDLSAAYLA------GKRFCFLSSHLDNQWVIDS 529
+ A+++ L +++ +K + +A+ + G S + W+IDS
Sbjct: 334 GLSAAELEALRSLLKNHKPSAPSQLHQFTTASSSSPTEETRGTASLNALSKSASLWIIDS 393
Query: 530 GATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVFHVPDFQF 709
GATDH L+MF YT + P V +PNG +G + + ++L NV ++P F +
Sbjct: 394 GATDHACYSLNMFSHYTKVP-PIPVRLPNGSTVTTDIIGDIHITNTLVLTNVLYLPHFTY 452
Query: 710 NLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFV-GTSDKTATVPXXX 886
NL+SV KV HQ + TF + C ++ + ++ I G LY++ GT+ ++
Sbjct: 453 NLISVSKVTHQLACTFTFASNVCTIH-NSQQKMIGSGKKLNGLYYLEGTNASVHSLSSGT 511
Query: 887 XXXXXXXXXXX-WHCRLGHLPFDRIHCIDSLHCTRS-NPSFICNTCPKARMNRISFPSSS 1060
WH R GH R+ + L+ + S N +C+ C A+ ++S+ S+
Sbjct: 512 VCTFFSIPQSALWHFRFGHASNTRLEIMHKLYPSISINKDCVCDVCHLAKQKKLSYSLST 571
Query: 1061 IKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKGNAFQTLTAFIA 1240
+T+ F+L+H+DIWGPYS T +G +YFLTIVDDFSR TW LL K + FI
Sbjct: 572 SQTTKCFDLLHMDIWGPYSTATLHGHKYFLTIVDDFSRFTWVILLKGKNEVASHVQHFIQ 631
Query: 1241 YIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQNGVVERKHKHLLE 1420
+EN F +TVKI+RSDNG EF FY+ KGI+HQTSC TPQQNG VERKH+ +L
Sbjct: 632 LVENQFDSTVKIVRSDNGPEFS---IPSFYASKGIVHQTSCVYTPQQNGRVERKHQSILA 688
Query: 1421 TARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKAPSYEHIRSFGCL 1600
ARAL Q++LP YWG ++L + +L+NR PS V++ PY L + P +R FGCL
Sbjct: 689 IARALLIQSHLPAKYWGYAVLHSVYLMNRMPSVVIEGDLPYHKLHKELPDISMLRIFGCL 748
Query: 1601 CYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVVFHEQHYPFHYL 1780
CYVST RLK + RA CVFLGY G K + LDL + ++V SR+V F E +P+
Sbjct: 749 CYVSTNDAHRLKLDHRARKCVFLGYKSGTKGFVALDLHSSEVVVSRNVQFEELIFPYTSQ 808
Query: 1781 PKWSDSIVFPLP-LDDLSHNF------------------IPAVTSP---TEPSESISDAS 1894
PK + F +P +D + + IP+ SP TEPS+SI
Sbjct: 809 PKSQTNWEFFVPPIDPIPYTTVNPTNNDATPTAIEPDEPIPSTESPVPQTEPSQSIQQ-- 866
Query: 1895 NTSPLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDF 2074
T P Q + +PPN P+ + +HL D+
Sbjct: 867 -TEPSQSIQQNEPSQSI-------QPPNPPPLRKSTRITKPP------------SHLADY 906
Query: 2075 V--GSKSTTPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEID 2248
V G +T N S + + +++ T +EP SY EA ++ WV+AM E+
Sbjct: 907 VCHGIAHSTKYPISNYTSHNHISSQQLTYTLSLMTETEPTSYFEACKHEHWVKAMQSELQ 966
Query: 2249 ALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTF 2428
AL+ N TW LP G K +G++WVYKIK KSDGS+ER+K RLV +G +Q EG+DYF+TF
Sbjct: 967 ALEQNKTWTIVSLPTGVKPIGSKWVYKIKRKSDGSIERYKARLVAKGYNQVEGIDYFETF 1026
Query: 2429 SPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPN-PDNKVCRL 2605
SPV KM T+R +LAIA+ + W +HQ+DVNNAFLHG+L E+VYM++P G+ +KVC+L
Sbjct: 1027 SPVAKMTTIRVVLAIASIRNWFVHQLDVNNAFLHGELCEDVYMQIPQGLEGFATDKVCKL 1086
Query: 2606 RKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGS 2785
KSLYGLKQASR+W++KLS L F Q +D +LF+K T + VYVDDI++TG
Sbjct: 1087 TKSLYGLKQASRKWYEKLSQFLISHHFIQVPSDPTLFVKKTSDSFTALLVYVDDIVLTGD 1146
Query: 2786 DPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAK 2965
I+ +K LH F IKDLG L +FLGLEV + GI L+QR++ +LLA+TG L K
Sbjct: 1147 SMAEITNIKNELHHTFGIKDLGILKFFLGLEVAHSTKGITLSQRQYCLDLLAETGDLGCK 1206
Query: 2966 PAVTPLPQHMKF-SDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQ 3142
P+ P+ +K D +PY D + YR+L+GKL +LT+TRPD+ F VQ L QFL P Q
Sbjct: 1207 PSSIPMDPSLKLHHDDSAPY-TDITGYRTLVGKLLYLTNTRPDIAFPVQQLCQFLDCPTQ 1265
Query: 3143 IHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSP 3322
+H H +L YLKG G G+ S L ++D+DW C +RRS+TGY G S
Sbjct: 1266 LHYKAAHKVLRYLKGCPGSGLYFPRSSDTQLVGFTDADWGGCVDTRRSITGYCFFLGSSL 1325
Query: 3323 ISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHI 3502
I W L WL LL +L V ++ +L+CD+QSA+HI
Sbjct: 1326 ICWKSKKQQTISRSSSEAEYRALASGTCELQWLTYLLRDLQVTLIQQPSLYCDSQSAIHI 1385
Query: 3503 AKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKL 3682
A NPVFHERTKH++IDCH R+++ GL+ L + QLAD++TK L F +LL+KL
Sbjct: 1386 ASNPVFHERTKHLDIDCHVVRERLQAGLMKLLPVSGFQQLADIMTKALHPANFHRLLTKL 1445
Query: 3683 GMSKSHPP 3706
G+ + P
Sbjct: 1446 GLLDIYRP 1453
>dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subterraneum]
Length = 1512
Score = 799 bits (2064), Expect = 0.0
Identities = 470/1222 (38%), Positives = 651/1222 (53%), Gaps = 64/1222 (5%)
Frame = +2
Query: 215 GIAPNGRRSKFFCTNCRVWGHCLERCFKVHPVINESTPDVPVSQKNSPNVV--------- 367
G P K CT C H +E C+K H + N+ ++
Sbjct: 279 GFNPQYNNKKKVCTYCGKENHVVENCYKKHGFPPHYGRGSTANNANAGELMDNDDARSTR 338
Query: 368 -----VFNQAQMDQLYAMMSQYKLAPQDGTGIDLSAA---YLA---GKRFCFLSSHLD-N 511
F +AQ +QL ++ G ++ A YLA F +H
Sbjct: 339 GSDSFSFTKAQYEQLVNLLQTSASTSSAGPSTSINGASTSYLAKAGNTNSVFSCNHFSYG 398
Query: 512 QWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVFH 691
W+IDSGA+DH+ L M D+ ++ P V MPNG A GSV+L + I+ NV
Sbjct: 399 AWIIDSGASDHICSSLSMLTDHHDIN-PIQVKMPNGTIAYAKQAGSVQLGPNFIIDNVLL 457
Query: 692 VPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFVGTSDK--- 862
VP+F NLLSV ++ H + F + C++ + I G + + LY++ +
Sbjct: 458 VPEFSLNLLSVPRLTHNSKFVVLFDNLDCLIQEKKSLKMIGSGELIEGLYYLTNKPQPVS 517
Query: 863 -TATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDS-LHCTRSNPSFICNTCPKARMN 1036
+++ WH RLGHL R+ + S + +C+ C AR
Sbjct: 518 ANSSISINPSSNIHIPKQALWHFRLGHLSHARLLLMQSSFPFVTIDEHAVCDICHLARHK 577
Query: 1037 RISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKGNAF 1216
++++ S K S ELIH DIWGP S + +G RYFLT +DDFSR TW LL +K
Sbjct: 578 KLTYKLSVNKASHCGELIHFDIWGPTSIHSIHGHRYFLTAIDDFSRFTWVILLKSKAEVS 637
Query: 1217 QTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQNGVVE 1396
+ FI IE F T V+ IR+DNG EF EFY+ KGI HQTSC TPQQNG VE
Sbjct: 638 SLVIQFITMIEKQFNTIVRTIRTDNGPEFL---IPEFYASKGINHQTSCVETPQQNGRVE 694
Query: 1397 RKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKAPSYE 1576
RKH+HLL R+L FQ+ LP +W ++ AT++INR + +L+NK+PY +L NK P E
Sbjct: 695 RKHQHLLNVGRSLLFQSKLPKKFWSYAVSHATYIINRVCTPLLQNKSPYHLLYNKPPDLE 754
Query: 1577 HIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVVFHE 1756
++ FG LCY STL++ R K + RA C+FLGY G K D+ I SR++ ++
Sbjct: 755 QLKVFGSLCYASTLQNQRTKLDPRARKCIFLGYKSGMKGVILYDIHNHNIFVSRNITHYD 814
Query: 1757 QHYPFHYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSESISDASNT------SPLQD- 1915
H LP S S + +P S N P +T PT S S S +T +P+ D
Sbjct: 815 -----HILPYASSS--YSIPWSYHSPNIDPFITPPTSNSGSSSIPHSTDHIHFNTPMCDQ 867
Query: 1916 ---------------VXXXXXXXXXXXXXXIPEPPNSA----PVTD--NPSXXXXXXXXX 2032
V IP P+ P T+ +PS
Sbjct: 868 ENPSQPSSQTPSDLFVPQVTDNDIVSSQPSIPHQPHDTHSPLPTTNLPSPSHNSIPQTRQ 927
Query: 2033 XXXXXXXXAHLKDFVGSKS--TTPRHWCNLV-------SFSSLPVSHQAFSVHASTFSEP 2185
HL D+V + S ++P ++ S+S++ + +++ + EP
Sbjct: 928 STRMSVKPKHLSDYVCNLSVDSSPPSSPGILYPISSFHSYSNISSKFRNYALSITASVEP 987
Query: 2186 RSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERF 2365
R Y EASQ WV+AMN EI ALQ N TW P K +G +WVYK+K K+DGS+ER+
Sbjct: 988 RDYKEASQQQCWVDAMNNEIQALQHNKTWCYVTPPAHIKPIGCKWVYKVKHKADGSVERY 1047
Query: 2366 KGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSE 2545
K RLV +G +Q EG+D+FDTFSPV K+ TVR+++A+A+ + W ++QMDVNNAFLHGDL E
Sbjct: 1048 KARLVAKGYNQVEGLDFFDTFSPVAKITTVRTLIALASIRSWHLNQMDVNNAFLHGDLQE 1107
Query: 2546 EVYMKMPLGIPNPD-NKVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLK 2722
+VYM++P G+ +P ++VC+L KSLYGLKQASR+W++KL++ L +G+TQ+ +D+SLF
Sbjct: 1108 DVYMEVPQGVNSPKPHQVCKLLKSLYGLKQASRKWYEKLTSLLLKEGYTQASSDHSLFTL 1167
Query: 2723 TVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGI 2902
T + VYVDDI++ G+ +++K + F IKDLG L YFLG+EV + GI
Sbjct: 1168 KHGSDFTALLVYVDDIILAGNSLQEFARIKLIMDNAFKIKDLGPLKYFLGIEVAHSKQGI 1227
Query: 2903 ILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHT 3082
+ QRK+ +LL DTG L +KPA TPL +K SP D YR LIGKL +LT T
Sbjct: 1228 SICQRKYCLDLLKDTGLLGSKPAPTPLDPSIKLHQDSSPAYDDVGGYRRLIGKLLYLTTT 1287
Query: 3083 RPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWA 3262
RPD++FA+Q LSQFL +P H D ++ YLKG+ G+G+ L L ++D+DWA
Sbjct: 1288 RPDISFAIQQLSQFLSSPTTTHFDTACRVVRYLKGSPGRGLFFPRQSPLQLLGFADADWA 1347
Query: 3263 ACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEEL 3442
C +RRS +GY G S ISW L W+V LL++L
Sbjct: 1348 NCADTRRSTSGYCFFIGSSLISWRAKKQNTVSRSSSEAEYRSLSFASCELQWIVYLLKDL 1407
Query: 3443 GVHGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQL 3622
+ +P L+CDNQSA+HIA NPVFHERTKH+EIDCH RDKV G+ L + T+ QL
Sbjct: 1408 SIDCERPPVLYCDNQSAIHIASNPVFHERTKHLEIDCHLVRDKVQSGVFKLLPISTKAQL 1467
Query: 3623 ADVLTKVLPSNQFQQLLSKLGM 3688
AD TK LP F LSKL M
Sbjct: 1468 ADFFTKALPPKVFNSFLSKLNM 1489
>gb|PRQ38882.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 2324
Score = 813 bits (2099), Expect = 0.0
Identities = 462/1106 (41%), Positives = 611/1106 (55%), Gaps = 44/1106 (3%)
Frame = +2
Query: 455 SAAYLAGKRFCFLSSHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARV 634
S+ +L R+ SH D + SGATDH+T + + V +PNG+ A +
Sbjct: 615 SSDFLKHMRYLLRISH-DMERFRYSGATDHITSIPNSLSNLVPTPSFPPVKLPNGEHAPI 673
Query: 635 HHVGSVRLNEHIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIV 814
H +G + ++ L +V P F+ +L++ ++ I
Sbjct: 674 HSIGDFSFHSNLRLNDVLCAPSFK-DLVT--------------------------KKIIG 706
Query: 815 LGNVRQNLYFVGTSDKTATVPXXXXXXXXXXXXXX-WHCRLGHLPFDRIHC----IDSLH 979
LG LY++ + AT P WH RLGH +R+ I +
Sbjct: 707 LGREHNGLYYL--TPNLATKPSHISSANHAVMSTTLWHRRLGHPSPNRLQLLAKTIPGVS 764
Query: 980 CTRSNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIV 1159
C+ +C+ CP A+ R+SF S+I T+ F LIH DIWGP+ +H+G RYFLTIV
Sbjct: 765 CSADK---VCDVCPLAKQTRLSFNLSTISTTKPFALIHCDIWGPHKIASHSGARYFLTIV 821
Query: 1160 DDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKK 1339
DDFSR TW +L+ K L +F A+ E F V+ IRSDNG EF R+ F+
Sbjct: 822 DDFSRCTWLYLMHAKSETQNLLKSFFAFTETQFNQKVQHIRSDNGSEFLSMRS--FFQAN 879
Query: 1340 GIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSS 1519
GIIHQ SC TPQQNGVVERKH+H++ ARAL FQANLP+ +W + +LT +LINR P+
Sbjct: 880 GIIHQHSCVYTPQQNGVVERKHRHIITIARALLFQANLPLEFWAECVLTVVYLINRLPAP 939
Query: 1520 VLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYK 1699
+L K+P+E + + P Y HIR FGCL Y + + H + KF+ RA C+F+GYPFG+KAYK
Sbjct: 940 LLSGKSPFEKIFQRVPQYSHIRVFGCLAYATNV-HPKQKFDPRAHKCIFVGYPFGQKAYK 998
Query: 1700 CLDLTTRQIVCSRDVVFHEQHYPFHYLPKWSDSIVFPL-PLDDLSHNFIPAVTSPTEP-- 1870
DLTT++ SRDVVFHE +P+ DS L P D + N IP P EP
Sbjct: 999 LYDLTTKKFFTSRDVVFHEDIFPYK-----QDSPNLSLQPHDAVLPNVIPENDIPQEPLS 1053
Query: 1871 SESISDASNTSPLQD------VXXXXXXXXXXXXXXIPEPPNSAPVTDN----------- 1999
+ +S +T P D V P +S+P DN
Sbjct: 1054 ASRVSPIEHTLPQVDNSLSPNVLSDHETHPNDQTPPSPSSHHSSPPLDNSSPSSPSSPPV 1113
Query: 2000 PSXXXXXXXXXXXXXXXXXAHLKDFVGSKSTTPRH------W-----------CNLVSFS 2128
P+ LKD+V S P W N +S+
Sbjct: 1114 PNEDTVPALRRSERVRKPNVKLKDYVCSHVVLPTQEDSSSLWPFPNKGTRYPLSNYISYH 1173
Query: 2129 SLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKAL 2308
SH++F + + EP S+ EA +NP W EAM EI AL+AN TW LPPGK+ +
Sbjct: 1174 RFSSSHRSFIANITRSVEPNSFAEAIKNPQWQEAMTSEIQALEANNTWSLTPLPPGKEPI 1233
Query: 2309 GNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKR 2488
G +WVYKIK SDG++ER+K RLV +G Q EGVDY +TFSP K+ T R +LAIAAS+
Sbjct: 1234 GCKWVYKIKYNSDGTIERYKARLVAKGYTQVEGVDYCETFSPTAKLTTFRCLLAIAASRN 1293
Query: 2489 WQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNP-DNKVCRLRKSLYGLKQASRQWFQKLSA 2665
W +HQMDV NAFLHGDL EEVYM P G +N VCRL KSLYGLKQASR WF K S
Sbjct: 1294 WSLHQMDVQNAFLHGDLHEEVYMLPPPGFSRQGENLVCRLNKSLYGLKQASRNWFSKFSN 1353
Query: 2666 ALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKD 2845
A+Q G+ QSK DYSLF + V T V +YVDDI++TG+DP +I LKAFLH+EF IKD
Sbjct: 1354 AIQKAGYRQSKADYSLFTRVVGNSFTAVLIYVDDIVITGNDPKAIELLKAFLHKEFRIKD 1413
Query: 2846 LGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYL 3025
LG L YFLG+EV GI ++QRK+ ++L D G A+P P+ Q++K + L
Sbjct: 1414 LGNLKYFLGIEVSRSKKGIFISQRKYALDILLDAGLTGARPCHFPMEQNLKLTPTNGEIL 1473
Query: 3026 KDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGI 3205
KD + YR LIGKL +LT TRPD+ ++V+ LSQF+ P++ H++ +LH++KG G+GI
Sbjct: 1474 KDPTRYRRLIGKLIYLTVTRPDIVYSVRILSQFMNQPRKPHMEAAMRVLHFIKGNPGRGI 1533
Query: 3206 LLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXX 3385
L+L AY DSDWA+CP +R+S TGY + G S ISW
Sbjct: 1534 FFPSENDLALKAYCDSDWASCPTTRKSTTGYSVFLGNSLISWKSKKQSNVACSSAEAEYR 1593
Query: 3386 XXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTR 3565
LTWL +L++ + KP +L+CDNQ+ALHIA NPVFHERTKHIEIDCH R
Sbjct: 1594 AMAMTCRELTWLRYILQDFEIIQDKPASLYCDNQAALHIAANPVFHERTKHIEIDCHVVR 1653
Query: 3566 DKVMEGLIHLS-YLPTQNQLADVLTK 3640
+K+ GLI YL N + L K
Sbjct: 1654 EKLQAGLISTRYYLDLSNTKIEALLK 1679
>gb|OMO88956.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1451
Score = 789 bits (2037), Expect = 0.0
Identities = 458/1127 (40%), Positives = 626/1127 (55%), Gaps = 61/1127 (5%)
Frame = +2
Query: 509 NQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVF 688
+ W+ID+GATDH+T F Y ++ +V +PN K +V H+G+V+ N+ +IL +V
Sbjct: 327 SDWIIDTGATDHITCTFDSFKTYRPVNN-VFVGLPNNTKVQVTHIGTVQFNDSLILFDVL 385
Query: 689 HVPDFQFNLLSVYKVLHQYNASITFTTVSCV---------------------LNVPTLRE 805
+VPDF FNL+SV K+ + + + CV L T++
Sbjct: 386 YVPDFTFNLVSVGKLTSDLHCCLITVSSHCVIQDINHWKMIGTAERSDGLYKLQRHTMKH 445
Query: 806 ----PIV--LGNVRQNLYFVGTSDKTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCI 967
P++ + +V+ +L S +++ V WH RLGHL R+ I
Sbjct: 446 ATAMPVIETVDSVQCSLPIDSASVQSSNVVSNSISCKTDANSVLWHNRLGHLSNSRLKLI 505
Query: 968 DSLHCTRSNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYF 1147
S P + C ++ R FP SS T+ F+L+H+DIWG PT G YF
Sbjct: 506 ----IPSSIPVELYEVCHMSKHKRFPFPVSSSVTAKCFDLVHIDIWGDNYAPTFKGDTYF 561
Query: 1148 LTIVDDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEF 1327
LTIV D SR TW L+ K A + F+A + F V+ I++DNG EF F
Sbjct: 562 LTIVYDLSRFTWVFLMKNKSEARVIVQNFVALAKVQFNAEVRCIKTDNGQEFNMA---PF 618
Query: 1328 YSKKGIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINR 1507
Y KGI+HQTSC TPQQN +VERKH+H+L AR+L FQA+LPI +WG+ +L A LINR
Sbjct: 619 YESKGILHQTSCIKTPQQNSIVERKHQHILNVARSLRFQASLPIDFWGECVLHAVFLINR 678
Query: 1508 FPSSVLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGK 1687
P+ VL N TP++ L N++P+ + ++ FG L + S + + KF+SR+ VFLG+ G
Sbjct: 679 IPTKVLGNVTPFQKLFNESPNIDVLKVFGSLAFASNHSNIKNKFDSRSIKSVFLGFQPGV 738
Query: 1688 KAYKCLDLTTRQIVCSRDVVFHEQHYPFHYLPKWSDSIVFP--LPLDDL----SHNFIPA 1849
K YK DL + SRDV F+E YPF +D++ F + ++L S NF A
Sbjct: 739 KGYKLYDLQNNKKNLSRDVTFYEHIYPFTEEYAKTDNLQFSKHISTENLVLPNSDNF--A 796
Query: 1850 VTSPTEPSESISDASNTSPLQDVXXXXXXXXXXXXXXIP--------------------- 1966
+ + PS +S N S L +V IP
Sbjct: 797 AMNDSIPSSDVSTQQNMSHLSNVPVASSSSNTEAVLQIPIATVYQNNPVLHEISEPILQS 856
Query: 1967 ---EPPNSA-PVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGSK--STTPRHWCNLVSFS 2128
P NS P T S HL+ F ++ T+P ++ S+
Sbjct: 857 SNVGPANSTIPNTSQQSNTNYHNVRRSTRLKFRPPHLQSFECNQVQKTSPHSLSSVFSYD 916
Query: 2129 SLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKAL 2308
++ H+AF+V +EPR+Y EA ++ W +AMN+E++AL+ TW+ DLP GK+ +
Sbjct: 917 NITSKHKAFAVAIDQDTEPRNYKEAIKSQQWQQAMNEELEALEKTKTWKLVDLPHGKQPI 976
Query: 2309 GNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKR 2488
G +WVYK+K K+DGS+ER+K RLV +G Q+EGVDY DTFSPV K+AT+R++L +AA K
Sbjct: 977 GCKWVYKVKRKADGSIERYKARLVAKGYTQQEGVDYLDTFSPVAKIATIRTLLVVAALKG 1036
Query: 2489 WQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPDNKVCRLRKSLYGLKQASRQWFQKLSAA 2668
W +HQ DVN FLHGDLSEEVYMK+P G KVC+L KSLYGLKQASRQW KL+ +
Sbjct: 1037 WYLHQCDVNTTFLHGDLSEEVYMKLPEGYLEGSTKVCKLVKSLYGLKQASRQWNLKLTES 1096
Query: 2669 LQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKDL 2848
L GF QS+ D++LF+K VD + VYVDDI+V +D T + +KA+LH F+IKDL
Sbjct: 1097 LIKYGFHQSQADHTLFIKFVDKNFIALLVYVDDIIVASNDITEVINIKAYLHDLFSIKDL 1156
Query: 2849 GFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYLK 3028
G L +FLGLEV GI + Q+K+T +LL D FL KP TP+ + + L
Sbjct: 1157 GELKFFLGLEVARSKQGINVCQKKYTMDLLKDMNFLVCKPTSTPILPETRLTTESGTPLA 1216
Query: 3029 DQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGIL 3208
D S YR L+GKL +LT TR D+++AVQ L+QFL P HL H +L YLKGT GQG+L
Sbjct: 1217 DASQYRQLVGKLQYLTTTRLDISYAVQQLAQFLDKPTSDHLQVAHRVLRYLKGTIGQGLL 1276
Query: 3209 LNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXX 3388
+ L AYSDSDW C SR+S+TGY I G S +SW
Sbjct: 1277 FSSQGIFQLKAYSDSDWGTCLDSRKSITGYCIFLGDSLVSWKTKKQNTVSRSSSEAEYRA 1336
Query: 3389 XXXXXXXLTWLVRLLEELGVHGLKPVT-LHCDNQSALHIAKNPVFHERTKHIEIDCHFTR 3565
+ WL L+++L + L+P T L CDN SA+HIAKNPVFHERTKHI+IDCH R
Sbjct: 1337 LATTVCEIQWLNYLMKDLQI-TLEPSTPLFCDNLSAIHIAKNPVFHERTKHIDIDCHVVR 1395
Query: 3566 DKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLGMSKSHPP 3706
K+ EGLI L + ++ QLAD TKVL S F SKLG+ + P
Sbjct: 1396 TKLQEGLIKLLPVSSKLQLADCFTKVLSSTNFINAFSKLGIQNLYIP 1442
>gb|KYP42321.1| Copia protein [Cajanus cajan]
Length = 1456
Score = 789 bits (2037), Expect = 0.0
Identities = 457/1236 (36%), Positives = 668/1236 (54%), Gaps = 76/1236 (6%)
Frame = +2
Query: 227 NGRRSKFFCTNCRVWGHCLERCFKVH----------------------PVINESTPDVPV 340
NGR ++F C C+ H ++ CF+++ ++ T
Sbjct: 237 NGRGNRF-CAKCKKTNHTIDSCFEIYGYPAGYRNRDKSNSTSKAFANLTTVDSDTASRSA 295
Query: 341 SQKNSPNVVVF--NQAQMDQLYAMMSQYKLAPQDGTGIDLSAAYLA-GKRFCFLSSHLDN 511
+ + S N F ++ Q A++ Q K P + + + G F SS L
Sbjct: 296 TPEESSNQTQFTLSKEQYHAFLALIQQNKDVPHSVNHVQQNPKNSSPGTPF---SSSL-- 350
Query: 512 QWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVFH 691
WV+DSGATDH+ P H+F + KP + +PN G+VRL + ++L N F+
Sbjct: 351 -WVLDSGATDHICPSQHLFDSLNPI-KPISISLPNHTTVLAKLSGTVRLGD-LVLPNTFY 407
Query: 692 VPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFVGTS---DK 862
VP F +L+S+ + L + I F +C + + + I + +Q L+++ S D
Sbjct: 408 VPHFAMHLISIPR-LTSSDCLILFCDTNCHIVQKSTSKTIGVAKKKQGLFYLLNSVEHDL 466
Query: 863 TA-----------------------TVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDS 973
TA T+ WH +LGH+P + I S
Sbjct: 467 TASTLLDIHPFFNQCFSTINNTVHDTLYKNAINNNTLNDSMLWHSKLGHVPNKVMQQICS 526
Query: 974 LHCTRSNPSF-ICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFL 1150
+ F +C+ C ++ +SF +S +S FELIHVDIWGP + + G++YFL
Sbjct: 527 QNSAIPFHKFEVCDVCHYSKQKNLSFSNSHTTSSRFFELIHVDIWGPLNVSSFQGYKYFL 586
Query: 1151 TIVDDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFY 1330
T+VDD+SR TWTHLL TK L +FI IE F +K +RSDNG EF ++F+
Sbjct: 587 TVVDDYSRFTWTHLLKTKSEVKAILPSFITLIEKQFDVHLKRLRSDNGKEFY---LHDFF 643
Query: 1331 SKKGIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRF 1510
KGI+H+TSC PQQNG+VERKH+H+L RAL FQA LP +W ++ ATH+INR
Sbjct: 644 QNKGILHETSCVERPQQNGIVERKHQHILNVCRALLFQAKLPKQFWSFAVKQATHIINRL 703
Query: 1511 PSSVLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKK 1690
P+ +L K+P+E++ N P ++ FGCL + +TL R K + RAS C+FLGY G K
Sbjct: 704 PTPLLSQKSPFEMIYNCKPDLTELKVFGCLAFATTLSSKRTKLDRRASKCIFLGYKNGTK 763
Query: 1691 AYKCLDLTTRQIVCSRDVVFHEQHYPFH-YLPKWS--DSIVF-------------PLPLD 1822
+ +L + + SRDV+F+E+ +P+ ++P S DS++ P P
Sbjct: 764 GFLLFNLHNKSFLISRDVLFYEKIFPYSAHVPSMSASDSLLLDVVKDNDTTIYSDPFPTT 823
Query: 1823 DLSHNFIPAVTSPTEPSESISDASNTSPLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNP 2002
SH PS + +++ P + +P S+ T++
Sbjct: 824 TFSHGSPSIPLDTPLPSSETTISTDRPPFSPINTCPIPTATLSTPELP----SSNTTNDA 879
Query: 2003 SXXXXXXXXXXXXXXXXXAHLKDFVGSK--STTPRHWC-----NLVSFSSLPVSHQAFSV 2161
S +L+++ S++ C + V++++ SH +F +
Sbjct: 880 SQVVMPQTRVSTRIRKPPRYLQEYYCENLASSSAASNCLYPLSSFVTYNNCSPSHTSFCL 939
Query: 2162 HASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKALGNRWVYKIKLK 2341
S EP S+ EA+ W AM E+ AL+ N TW LP GK+ +G +WVY++K K
Sbjct: 940 SISAQHEPTSFKEANSEECWRRAMEAELQALEKNQTWSLVRLPEGKRPVGCKWVYRVKYK 999
Query: 2342 SDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNA 2521
DGS+ER+K RLV +G Q EGVDYF+TFSPVVK++TVR +L++AA+ W +HQ+DV+NA
Sbjct: 1000 VDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNA 1059
Query: 2522 FLHGDLSEEVYMKMPLGIP-NPDNKVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSK 2698
FLHGDL EEVYMK P G + VC+L KSLYGLKQASRQW QKL+ AL F QS
Sbjct: 1060 FLHGDLFEEVYMKPPPGFKLSHPRLVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSS 1119
Query: 2699 NDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLE 2878
D+SLF+K +T + VYVDD+++TG+D IS +KA+LH +F IKDLG L +FLGLE
Sbjct: 1120 TDHSLFIKKSHSSITALLVYVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFLGLE 1179
Query: 2879 VHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIG 3058
+ +G+IL QRK+ ELL++ G D KP TP+ +K L D + +R LIG
Sbjct: 1180 IARSQSGLILNQRKYCLELLSEHGLTDCKPVSTPIDASVKLYASEGLPLDDPTIFRRLIG 1239
Query: 3059 KLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLH 3238
+L +LT+TRPD++FAVQ LSQF+ +P+ H +L YLK + G+ + +
Sbjct: 1240 RLLYLTNTRPDISFAVQQLSQFVDSPRATHFQAALRILRYLKSSPALGLFYPSQTEHRIQ 1299
Query: 3239 AYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTW 3418
A+SDSDWA+CP +RRSVTG+ I +G + ISW L W
Sbjct: 1300 AFSDSDWASCPNTRRSVTGFCIFYGSALISWKSKKQSTVSRSSSEAEYRALASVTCELQW 1359
Query: 3419 LVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLS 3598
L+ L +L ++ P ++ CD+QSA++IAKNP FHERTKHIE+DCH TR K+ +GLIHL
Sbjct: 1360 LLFLCHDLSINIPTPFSIFCDSQSAIYIAKNPTFHERTKHIEVDCHLTRLKIQQGLIHLF 1419
Query: 3599 YLPTQNQLADVLTKVLPSNQFQQLLSKLGMSKSHPP 3706
++P+++QLADV TK L F + +SKL + + P
Sbjct: 1420 HVPSKSQLADVFTKALYPRNFTEAVSKLCLIDIYNP 1455
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 773 bits (1995), Expect = 0.0
Identities = 435/1036 (41%), Positives = 594/1036 (57%), Gaps = 25/1036 (2%)
Frame = +2
Query: 668 IILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFV 847
+IL +V VP F NL+SV ++++ + + C++ + ++ I + LY +
Sbjct: 1 LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60
Query: 848 GTSDKTA---TVPXXXXXXXXXXXXXX-WHCRLGHLPFDRIHCIDSLH--CTRSNPSFIC 1009
T T P WH RLGHL I S + + C
Sbjct: 61 IRDSATRSQLTQPFVGNTISKDSSDSVLWHHRLGHLSNSTHRIIASQFPIVSYQHHDVPC 120
Query: 1010 NTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTH 1189
+ C A+ R+ S+ K++++ EL+H DIWGPYS P+ G +YFLT+VDDFSR TW
Sbjct: 121 DICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLTLVDDFSRFTWIV 180
Query: 1190 LLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNA 1369
++ +K Q LT FI+YIE F+T +K +R+DNG EF ++ + KGIIHQ SC
Sbjct: 181 MMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFL---MHDLFLSKGIIHQGSCVE 237
Query: 1370 TPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEV 1549
TPQQNGVVERKH+H+L TARAL+FQA+LP ++W +I A HLINR PS +L NKTPY+
Sbjct: 238 TPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIPSPLLDNKTPYQA 297
Query: 1550 LMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIV 1729
L + P H+RSFGCL Y STL+ R KF+ RA V LGY G K Y DL + +
Sbjct: 298 LHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKGYLLYDLHSHEFF 357
Query: 1730 CSRDVVFHEQHYPFHYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSES-ISDASNTSP 1906
SR+V FHE +PFH P+ TS T+PS + I+ + S
Sbjct: 358 MSRNVFFHEFTFPFH----------------------TPSQTSLTQPSPTPITIQTPISS 395
Query: 1907 LQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDF---- 2074
D+ PE P+ P++ P+ ++LKD+
Sbjct: 396 PYDLDNHVPPSPTSSTSIPPEQPHQ-PLSPAPAPSRHSTRMRQPP-----SYLKDYHCSL 449
Query: 2075 ------VGSKS--TTPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEA 2230
+ S S +TP + +++ S++ F + ST EP +Y +AS+ W+ A
Sbjct: 450 LAPTGRINSFSGISTPHSISSTLTYDFCSPSYKQFCLSVSTNFEPHTYTQASKYDCWIMA 509
Query: 2231 MNKEIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGV 2410
M E+ AL N TW DLP GK+ +G +WVYKIK SDGS+ER+K RLV +G Q EG+
Sbjct: 510 MKTELAALDMNQTWSIVDLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGL 569
Query: 2411 DYFDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPDN 2590
DY DT+SPV K+ TVR +LA+ A K W + Q+DVNNAFLHGDL EEVYM +P G+ P +
Sbjct: 570 DYLDTYSPVAKLTTVRVLLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSS 629
Query: 2591 -----KVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAV 2755
KVC+L KS+YGLKQASRQW+ KLS+AL G++ S D+SLF+K+ T + V
Sbjct: 630 SNTAPKVCKLHKSIYGLKQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLV 689
Query: 2756 YVDDILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQEL 2935
YVDDI++ G+D I +KA LH+ F IKDLG L YFLGLE+ + GI+L QRK+T E+
Sbjct: 690 YVDDIILAGNDKPEIDFIKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEI 749
Query: 2936 LADTGFLDAKPAVTPLPQHMKF-SDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQT 3112
L D GFL AKP+ TP +K SD SPY D++AYR LIG+L +LT TRPD+++ VQ
Sbjct: 750 LEDVGFLAAKPSSTPFNPSLKLHSDHGSPY-NDETAYRRLIGRLLYLTTTRPDISYVVQQ 808
Query: 3113 LSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVT 3292
LSQF+ P IH +L YLKG+ G+G+ + S L L A++DSDWA+C ISR+S+T
Sbjct: 809 LSQFVSKPLDIHYQAATRILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSIT 868
Query: 3293 GYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTL 3472
G+ + G S ISW L WL L +L P ++
Sbjct: 869 GFCVFLGSSLISWRSKKQSTISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSV 928
Query: 3473 HCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPS 3652
CDN+SA+++A NP FHERTKHIEIDCH R+K+ L+HL +P+ +QLAD TK L +
Sbjct: 929 FCDNKSAIYLAHNPTFHERTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHA 988
Query: 3653 NQFQQLLSKLGMSKSH 3700
F +SKLG+ H
Sbjct: 989 TSFNSFVSKLGLYDVH 1004
>dbj|GAU15708.1| hypothetical protein TSUD_307180 [Trifolium subterraneum]
Length = 1433
Score = 786 bits (2031), Expect = 0.0
Identities = 443/1080 (41%), Positives = 612/1080 (56%), Gaps = 16/1080 (1%)
Frame = +2
Query: 515 WVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILKNVFHV 694
W+IDSGATDH L MF YT + P V +PNG +G + + + I L NV ++
Sbjct: 363 WIIDSGATDHACSSLSMFSHYTKVS-PIPVRLPNGSIVNTDIIGDIHITDTIALTNVLYL 421
Query: 695 PDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFV-GTSDKTAT 871
P F +NLLSV +V HQ + TF C ++ R I G + LY++ GT+ T +
Sbjct: 422 PHFTYNLLSVSRVTHQLACTFTFAFNMCTIHNSQQRM-IGSGKLLNGLYYLEGTNASTHS 480
Query: 872 ----VPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHCTRS-NPSFICNTCPKARMN 1036
V WH R GH R+ + + + S N +C+ C A+
Sbjct: 481 LVKPVTGTVCTVFSIPQSALWHFRFGHASNSRLEIMHKSYPSISINKDCVCDVCHLAKQK 540
Query: 1037 RISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKGNAF 1216
++S+ S+ K++ FEL+H+DIWGPYS T +G +YFLTIVDDFSR TW LL K
Sbjct: 541 KLSYSLSTSKSTKCFELLHMDIWGPYSTATLHGHKYFLTIVDDFSRFTWVILLKGKNEVA 600
Query: 1217 QTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQNGVVE 1396
+ FI +EN F++TVKI+RSDNG EF + FY+ K I+HQTSC TPQQNG VE
Sbjct: 601 SHVQHFIHLVENQFESTVKIVRSDNGPEFS---LSSFYASKRIVHQTSCVYTPQQNGRVE 657
Query: 1397 RKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKAPSYE 1576
RKH+ +L ARAL Q++LP YWG ++L + +L+NR PS ++ PY L N+ P
Sbjct: 658 RKHQCILAIARALLIQSHLPAKYWGYAVLHSVYLMNRMPSVAIEGGLPYHKLHNRLPDIS 717
Query: 1577 HIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVVFHE 1756
++ FGCLCYVST RLK + RA C FLG+ G K + LDL + +IV SR+V F E
Sbjct: 718 MLKIFGCLCYVSTTDVHRLKLDHRARKCAFLGFKSGTKGFVALDLHSYEIVVSRNVQFEE 777
Query: 1757 QHYPF----HYLPKWSDSI--VFPLPLDDLSHNFIPAVTSPTEPSESISDASNTSPLQDV 1918
+P+ KW I + P+PL + T PT + S+ ++T ++ V
Sbjct: 778 LIFPYPSQTQSQTKWEFFIPPIDPIPLTN--------DTEPTTDQPTTSNDTSTISIEPV 829
Query: 1919 XXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGSK--ST 2092
P +P T+ P HL D+ + +
Sbjct: 830 DSISSNESITPPAPPDASPQYSPTTEPPPLRKSTRITKLPP------HLLDYECNNIVHS 883
Query: 2093 TPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTW 2272
T S + L ++++ T +EP SY+EA ++ WV+AMN E+ AL+ N TW
Sbjct: 884 TKYPISKYTSHNHLSSKQLSYTLSLLTETEPSSYSEACKHDHWVKAMNAELQALEQNKTW 943
Query: 2273 EACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMAT 2452
LP G K +G++WVYK+K K+DGS+ER+K RLV +G +Q EG+DYF+TFSPV KM T
Sbjct: 944 SIVSLPVGAKPIGSKWVYKVKRKADGSIERYKARLVAKGYNQVEGIDYFETFSPVAKMTT 1003
Query: 2453 VRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPN-PDNKVCRLRKSLYGLK 2629
+R ILAIA+ K W +HQ+DVNNAFLHG+L E+VYMK+P G+ +KVC+L KSLYGLK
Sbjct: 1004 IRVILAIASIKNWFVHQLDVNNAFLHGELCEDVYMKIPQGLDGFSADKVCKLTKSLYGLK 1063
Query: 2630 QASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQL 2809
QASR+W++KLS L FTQ+ +D +LF+K T + VYVDDI++TG I+ +
Sbjct: 1064 QASRKWYEKLSQFLISHQFTQAPSDPTLFVKKTSENFTALLVYVDDIVLTGDSMNEITNI 1123
Query: 2810 KAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPLPQ 2989
K L+ F IKDLG L +FLGLEV + GI L+QR++ +LLA+TG L KP+ P+
Sbjct: 1124 KNDLNHTFGIKDLGVLKFFLGLEVAHSLKGITLSQRQYCLDLLAETGDLGCKPSSIPMDP 1183
Query: 2990 HMKF-SDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHH 3166
+K D +PY D + YR+L+GKL +LT+TRPD+ F VQ L QFL P +H H
Sbjct: 1184 SLKLHHDDSTPY-NDITGYRTLVGKLLYLTNTRPDIAFPVQQLCQFLDCPTILHYKAAHK 1242
Query: 3167 LLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXX 3346
+L YLKG G G+ S L ++D+DW C +RRS+TGY G S I W
Sbjct: 1243 VLRYLKGCPGTGLYFPRSSDAHLTGFTDADWGGCVDTRRSITGYCFFLGSSLICWKSKKQ 1302
Query: 3347 XXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHE 3526
L WL L +L V + L+CD+QSA+HIA NPVFHE
Sbjct: 1303 QTISRSSSEAEYRALASGTCELQWLTYLFRDLQVTLTQKPLLYCDSQSAIHIASNPVFHE 1362
Query: 3527 RTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLGMSKSHPP 3706
RTKH++IDCH R+++ GL+ L + QLAD++TK L F +LL+KLG+ + P
Sbjct: 1363 RTKHLDIDCHVVRERLQSGLMKLLPVSGFLQLADIMTKALHPANFHRLLTKLGLLDIYRP 1422
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 784 bits (2025), Expect = 0.0
Identities = 445/1103 (40%), Positives = 615/1103 (55%), Gaps = 35/1103 (3%)
Frame = +2
Query: 485 CFLSSHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNE 664
C S W+IDSGATDH+T L F Y +++ P V++P G K H G+V +
Sbjct: 301 CTTHSFDTTPWIIDSGATDHVTCSLQFFTSYKLIE-PVIVNLPTGHKVTATHSGTVYFSS 359
Query: 665 HIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLY- 841
+ L +V ++ F FNL+SV K++ + ITFT C + + I +VR LY
Sbjct: 360 NFQLTDVLYISSFAFNLISVSKLVSTTSYQITFTNNVCFIQDIRTKMKIGSVDVRGGLYQ 419
Query: 842 ---------FVGTS---DKTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLH-C 982
F+ ++ K +P WH RLGHL R+H + L+ C
Sbjct: 420 LIPHHFKPPFIHSTIIHPKCDVIPIDL-----------WHFRLGHLSNTRLHNMQQLYPC 468
Query: 983 TRSNPSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTH-NGFRYFLTIV 1159
N F CN C A+ ++SF SS S F L+H+DIWGPYS + +G ++F TIV
Sbjct: 469 LTINKDFTCNICHYAKQRKLSFSSSHSTASRPFSLLHMDIWGPYSCISSIHGHKFFFTIV 528
Query: 1160 DDFSRSTWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKK 1339
DD + TW L+ K ++ FI IEN F T ++ I++DNG EF F++ K
Sbjct: 529 DDNTHFTWIFLMINKSETRMHISNFINLIENQFNTRIQTIQTDNGAEFL---MQNFFNSK 585
Query: 1340 GIIHQTSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSS 1519
GI+HQT+C TPQQNGVVERKH+HLL AL F + LP +W ++L AT+LINR +
Sbjct: 586 GIVHQTTCIETPQQNGVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLINRITTP 645
Query: 1520 VLKNKTPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYK 1699
+L NKTP++ L + +R FGCLCYVST R K + RA PCVFLG+ K Y
Sbjct: 646 LLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYI 705
Query: 1700 CLDLTTRQIVCSRDVVFHEQHYPFHYLPKWSDSIVFPLPLD----DLSHNFIPAVTSPTE 1867
DL TR I SR+V F+E H+P + +I P+ SH+ I + P +
Sbjct: 706 TYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPVVSPISFGIHSPSHDLISILPDPHQ 765
Query: 1868 -------PSESISDASNTSPLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXX 2026
P+ + D+ + +P PPNS+P+ +
Sbjct: 766 HNVTSPNPATTSHDSISLAPYSTTADSL-------------PPNSSPLRRSTRLRNPP-- 810
Query: 2027 XXXXXXXXXXAHLKDFVGSKSTTPRHWC--------NLVSFSSLPVSHQAFSVHASTFSE 2182
++L+D+ S ++T + +S+S L QAF S SE
Sbjct: 811 ----------SYLQDYHHSLTSTSTNLHPGMLYPIEKYISYSRLSNDFQAFVSSISAVSE 860
Query: 2183 PRSYNEASQNPAWVEAMNKEIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLER 2362
P SY EA+++ W++AM+ E++AL+ N TW LPP K+A+G RW+YKIK +DGS+ER
Sbjct: 861 PHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIER 920
Query: 2363 FKGRLVVQGNHQREGVDYFDTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLS 2542
+K RLV +G Q EG+DY TFSPV K+ TVR +LA+AA W + Q+DVNNAFLHGDL+
Sbjct: 921 YKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDLN 980
Query: 2543 EEVYMKMPLGI-PNPDNKVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFL 2719
EEVYM +PLG+ P N+VC+L+KSLYGLKQASRQWF KLS+ L G+ QS +D+SLF+
Sbjct: 981 EEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLFM 1040
Query: 2720 KTVDGQMTIVAVYVDDILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNG 2899
K T + +YVDDI++ G++ + I + L F IKDLG L YFLGLEV + +G
Sbjct: 1041 KFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKSG 1100
Query: 2900 IILTQRKFTQELLADTGFLDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTH 3079
I L+QRK+ ++L+D G + ++P TP+ + S L D S+YR L+G+L +LT
Sbjct: 1101 IHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLTT 1160
Query: 3080 TRPDLTFAVQTLSQFLQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDW 3259
TRPD+++ V LSQF+ P H + +L YLK G G+ + L L A+SDSDW
Sbjct: 1161 TRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSDW 1220
Query: 3260 AACPISRRSVTGYVILFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEE 3439
A C +RRS+TG+ + G S ISW L WL LL +
Sbjct: 1221 AGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLHD 1280
Query: 3440 LGVHGLKPVTLHCDNQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQ 3619
L V +P L+CDNQSALHIA N VFHERTKHI+IDCH R+K+ GL+ L + + +Q
Sbjct: 1281 LHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPHQ 1340
Query: 3620 LADVLTKVLPSNQFQQLLSKLGM 3688
LAD+ TK L + F L SKLGM
Sbjct: 1341 LADIFTKSLSPSMFTALYSKLGM 1363
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 780 bits (2015), Expect = 0.0
Identities = 419/1026 (40%), Positives = 582/1026 (56%), Gaps = 11/1026 (1%)
Frame = +2
Query: 644 GSVRLNEHIILKNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGN 823
GSV L H+IL +V +P F+FNLLSV + I F SCVL T + +G
Sbjct: 315 GSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGK 374
Query: 824 VRQNLYFVGTSDKTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHC---TRSN 994
NLY V + WH RLGH ++ + SL ++N
Sbjct: 375 QVANLYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNN 434
Query: 995 PSFICNTCPKARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSR 1174
F C C ++ + F S + K+S F+LIH+D WGP+S TH+G+RYFLTIVDD+SR
Sbjct: 435 TDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSR 494
Query: 1175 STWTHLLATKGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQ 1354
+TW +LL K + + F+ +EN F+TT+K +RSDN E T +FY KGI+
Sbjct: 495 ATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFT---QFYHSKGIVPY 551
Query: 1355 TSCNATPQQNGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNK 1534
SC TPQQN VVERKH+H+L AR+LFFQ+++PISYWGD ILTA +LINR P+ +L++K
Sbjct: 552 HSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDK 611
Query: 1535 TPYEVLMNKAPSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLT 1714
P+EVL P+Y+HI+ FGCLCY ST R KF RA C F+GYP G K YK LDL
Sbjct: 612 CPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLE 671
Query: 1715 TRQIVCSRDVVFHEQHYPFHYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSESISDAS 1894
T I+ SR VVFHE+ +PF L NF P + +PT P + S +
Sbjct: 672 THSIIVSRHVVFHEELFPF-----------LGSDLSQEEQNFFPDL-NPTPPMQRQS-SD 718
Query: 1895 NTSPLQDVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDF 2074
+ +P +PEP S + + A+L+D+
Sbjct: 719 HVNPSDSSSSVEILPSANPTNNVPEP--SVQTSHRKAKKP--------------AYLQDY 762
Query: 2075 VGSK--STTPRHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEID 2248
S+TP +S+ + + F EP +Y EA + W +AM E D
Sbjct: 763 YCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFD 822
Query: 2249 ALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTF 2428
L+ TWE C LP K+ +G RW++KIK SDGS+ER+K RLV QG Q+EG+DY +TF
Sbjct: 823 FLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETF 882
Query: 2429 SPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPN------PDN 2590
SPV K+ +V+ +L +AA + + Q+D++NAFL+GDL EE+YM++P G + P N
Sbjct: 883 SPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPN 942
Query: 2591 KVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDI 2770
VCRL+KSLYGLKQASRQW+ K S+ L GF QS D++ FLK DG V VY+DDI
Sbjct: 943 AVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDI 1002
Query: 2771 LVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTG 2950
++ ++ ++ LK+ + F ++DLG L YFLGLE+ D GI ++QRK+ +LL +TG
Sbjct: 1003 IIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETG 1062
Query: 2951 FLDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQ 3130
L KP+ P+ M F+ + YR LIG+L +L TRPD+TFAV L+QF
Sbjct: 1063 QLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSM 1122
Query: 3131 NPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILF 3310
P++ HL V+ +L Y+KGT GQG+ + + +L L Y+++D+ +C SRRS +GY +
Sbjct: 1123 APRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFL 1182
Query: 3311 GGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQS 3490
G S I W L WL L+EL V KP L CDN++
Sbjct: 1183 GDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEA 1242
Query: 3491 ALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQL 3670
A+HIA N VFHERTKHIE DCH R+++++GL L ++ T+ Q+AD TK L + F +L
Sbjct: 1243 AIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHFHRL 1302
Query: 3671 LSKLGM 3688
+SK+G+
Sbjct: 1303 ISKMGL 1308
>gb|PNX93614.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1430
Score = 782 bits (2020), Expect = 0.0
Identities = 467/1214 (38%), Positives = 652/1214 (53%), Gaps = 55/1214 (4%)
Frame = +2
Query: 230 GRRSKFFCTNCRVWGHCLERCFKVHP---------VINESTPDVPV-SQKNSPNVVVFNQ 379
G+ S +CT+C H ++ CF + V + + V + S NS + +V +
Sbjct: 279 GQHSTRYCTHCGGDNHIIDNCFVKYGFPPGYQSKGVQSSNAKSVNLASTTNSDSSLVSSS 338
Query: 380 AQMDQLYAMMSQY----KLAPQ----------------DGTGIDLSAAYLAGKRFCFLSS 499
A L + Q+ KL Q D ++ +++ GK
Sbjct: 339 AMASSLNELQGQFQQFLKLFQQQTESNPTPASVNSIISDPVALNANSSPTYGKHSV---- 394
Query: 500 HLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIILK 679
WV+DSGATDH+T + F+ Y + K + +PN G+ N+ +I
Sbjct: 395 ----TWVLDSGATDHITYSMQHFISYHHI-KSVPISLPN---------GNKNSNQKMI-- 438
Query: 680 NVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFVGTSD 859
+Y + ASI+ VS S
Sbjct: 439 ------GIAKKKGGLYVIESPVAASISCNFVSPF------------------------SG 468
Query: 860 KTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHC------TRSNPSFICNTCP 1021
+ P WH RLGH+ D IH S+ + S P C+ C
Sbjct: 469 SNSGFPICNVASQVDKSSMLWHNRLGHVS-DMIHKSISVQFPFVPFKSHSTP---CDICH 524
Query: 1022 KARMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLAT 1201
A+ R+ FP S+ ++S IFEL+H DIWGP + NG +YFLT+VDDFSR TW L+
Sbjct: 525 YAKQKRLPFPDSNTRSSHIFELLHADIWGPNGIVSVNGHKYFLTLVDDFSRFTWIILMKN 584
Query: 1202 KGNAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQ 1381
K + F+ YIE F +K +RSDNG EF R ++F+ KGI HQ SC TPQQ
Sbjct: 585 KTETRNHIMNFVNYIETQFHAKLKSLRSDNGNEF---RMHDFFLAKGIAHQRSCVETPQQ 641
Query: 1382 NGVVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNK 1561
NG+VERKH+H+L ARAL FQA LP ++W SIL + HLINR P+ L++K+PYEVL +
Sbjct: 642 NGIVERKHQHILNVARALSFQAFLPSNFWHLSILHSVHLINRLPTPFLQHKSPYEVLFQQ 701
Query: 1562 APSYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRD 1741
P+ H+R+FGCL + STL + R KF RA VFLGY G K + D++ + SR+
Sbjct: 702 PPTLLHLRTFGCLAFASTLHNHRTKFMPRARKTVFLGYRDGTKGFLLYDISNHSFLVSRN 761
Query: 1742 VVFHEQHYPFHYLPKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSES---ISDASNTSPLQ 1912
V+F+E +P + S L NF+ + P PS +S ++ T+PL
Sbjct: 762 VIFYEDVFPLSSVNSSHTSSTTTLD------NFVLPIDPPNFPSSCPAPLSVSTGTNPLT 815
Query: 1913 DVXXXXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGSKST 2092
D + +++P + +L+DF S
Sbjct: 816 D-------HAENSATLVDNQVSNSPAVPPQNSSIPAPTRVSNRIRKIPGYLQDFHCSLLP 868
Query: 2093 TPRHWCNLVSFSSLPVS-----------HQAFSVHASTFSEPRSYNEASQNPAWVEAMNK 2239
+ + +FS+ P+S ++ F + ST EP+++ +A ++ W EAM
Sbjct: 869 SQHQSSSSNAFSTYPISSSLSYTNCATAYKHFCLSISTTIEPKTFKQACKSDCWKEAMKS 928
Query: 2240 EIDALQANGTWEACDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYF 2419
E+ AL+ N TW DLP GK +G +WVYKIK +DGS+ER+K RLV +G Q EGVDYF
Sbjct: 929 ELAALELNRTWSIVDLPTGKNPIGCKWVYKIKHNADGSIERYKARLVAKGYTQMEGVDYF 988
Query: 2420 DTFSPVVKMATVRSILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPDN--- 2590
DTFSPV K+ TV+++LA+A+ K W + Q+DVNNAFLHGDL+EEVYM +P G+ P++
Sbjct: 989 DTFSPVAKLTTVKTLLALASIKGWFLEQLDVNNAFLHGDLNEEVYMSLPPGVIIPNSCSN 1048
Query: 2591 --KVCRLRKSLYGLKQASRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVD 2764
KVCRL KSLYGLKQASRQW+ KLS+AL G++QS D+SLFLK V T + VYVD
Sbjct: 1049 TPKVCRLHKSLYGLKQASRQWYSKLSSALLSLGYSQSAADHSLFLKKVGSSFTALLVYVD 1108
Query: 2765 DILVTGSDPTSISQLKAFLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLAD 2944
DI++ G++ I+ +K+FL + F IKDLG L +F+GLE+ GI+L QRK+T ELL D
Sbjct: 1109 DIVLAGNNSLEITSVKSFLDKRFQIKDLGNLRFFVGLEIARSKKGILLNQRKYTLELLQD 1168
Query: 2945 TGFLDAKPAVTPLPQHMKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQF 3124
+G L AKP+ TP +K D SP D S YR LIG+L +LT TRPD+TFAVQ LSQF
Sbjct: 1169 SGNLAAKPSSTPYDPSLKLHDSESPPYNDPSGYRRLIGRLLYLTTTRPDITFAVQQLSQF 1228
Query: 3125 LQNPQQIHLDGVHHLLHYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVI 3304
+ +P+++H +L YLK + +G+ + S L L +SDSDWA C I+R+S+TGY +
Sbjct: 1229 VSSPREVHFQAATKVLRYLKASPAKGLFFSSSSSLKLSGFSDSDWATCAITRKSITGYCV 1288
Query: 3305 LFGGSPISWXXXXXXXXXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDN 3484
G S ISW L WL L ++LG+ P ++CDN
Sbjct: 1289 FLGTSLISWKSKKQSTVSRSSSEAEYRALASLSCELQWLHYLFKDLGIKFDAPAMVYCDN 1348
Query: 3485 QSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQ 3664
+SA+++A NP FHERTKHIEIDCH R+++ GLIHL +P+ +QLADVLTK L S+ F
Sbjct: 1349 KSAIYLAHNPSFHERTKHIEIDCHVVRERIQSGLIHLLPVPSSSQLADVLTKQLSSSAFA 1408
Query: 3665 QLLSKLGMSKSHPP 3706
L+SKLG+ H P
Sbjct: 1409 SLISKLGLLDIHSP 1422
>dbj|GAU38852.1| hypothetical protein TSUD_154140 [Trifolium subterraneum]
Length = 1494
Score = 784 bits (2025), Expect = 0.0
Identities = 459/1193 (38%), Positives = 643/1193 (53%), Gaps = 33/1193 (2%)
Frame = +2
Query: 212 FGIAPNGRRSKFFCTNCRVWGHCLERCFKVHPV---------------------INESTP 328
+G A + +S+ CT C H ++ CF+ H N
Sbjct: 262 YGKANSTSQSQKKCTYCHKTNHVVDNCFRKHGFPPGYRFKDGTVVGSKNQGQSSANCVNA 321
Query: 329 DVPVSQKNSPNVVVFNQAQMDQLYAMMSQYKLAPQDGTGIDLSAAYLAGK----RFCFLS 496
D + Q + + F+ L A++ K A + + ++ + ++A + +
Sbjct: 322 DDNMEQSSVDTRMTFSAEDYQALMALLKNSKSAGEGSSQVNNVSKFIASSFTNDKQGNVP 381
Query: 497 SHLDNQWVIDSGATDHMTPHLHMFLDYTVLDKPCYVDMPNGQKARVHHVGSVRLNEHIIL 676
+HLD W+IDSGATDH+ L +F +Y ++ P V +PNG +G++ + I L
Sbjct: 382 NHLDT-WIIDSGATDHVCASLSLFTEYRKVN-PIPVKLPNGSIVTTDIIGNISITPTITL 439
Query: 677 KNVFHVPDFQFNLLSVYKVLHQYNASITFTTVSCVLNVPTLREPIVLGNVRQNLYFV-GT 853
K+V ++P F FNL+SV +V + FT C + +L+ I G + LY++ GT
Sbjct: 440 KHVLYMPHFSFNLISVSRVSKDLDCVFAFTDNLCFIQ-NSLQRMIGSGRMLNGLYYLEGT 498
Query: 854 SDKTATVPXXXXXXXXXXXXXXWHCRLGHLPFDRIHCIDSLHCTR--SNPSFICNTCPKA 1027
+ + WH R GH +R+ + L+ T + F C+ C A
Sbjct: 499 HSQPNLLTGKQCNSLAIPNNALWHFRFGHTSQNRLEILQKLYPTIEVNKVDFCCDVCHLA 558
Query: 1028 RMNRISFPSSSIKTSAIFELIHVDIWGPYSRPTHNGFRYFLTIVDDFSRSTWTHLLATKG 1207
+ ++ + +SS + S I EL+H+DIWGP+S T +G +YFLTIVDDFSR TW LL K
Sbjct: 559 KQRKLPYVTSSSRASVILELLHMDIWGPFSTSTTHGHKYFLTIVDDFSRFTWIVLLKGKY 618
Query: 1208 NAFQTLTAFIAYIENHFKTTVKIIRSDNGIEFKDTRANEFYSKKGIIHQTSCNATPQQNG 1387
+ FI + ENHF VK +RSDNG EF ++FY KGI HQTSC TPQQNG
Sbjct: 619 EVASKVQEFINFAENHFCHKVKFLRSDNGQEFLSL--SKFYISKGIQHQTSCVYTPQQNG 676
Query: 1388 VVERKHKHLLETARALFFQANLPISYWGDSILTATHLINRFPSSVLKNKTPYEVLMNKAP 1567
VERKH+ +L ARAL Q++LP YWG ++L + ++NR PS+ LK + P+ L K P
Sbjct: 677 RVERKHQCILNIARALMTQSHLPAKYWGYAVLQSVFIMNRVPSNALKGQIPFVALYGKLP 736
Query: 1568 SYEHIRSFGCLCYVSTLKHGRLKFESRASPCVFLGYPFGKKAYKCLDLTTRQIVCSRDVV 1747
++ FG LC+VST + R K + RA CV+LG G K Y LDL +I+ SR+VV
Sbjct: 737 ELSDLKVFGSLCFVSTHDNQRSKLDPRARKCVYLGIKPGVKGYVALDLHNYEIIVSRNVV 796
Query: 1748 FHEQHYPFHYL-PKWSDSIVFPLPLDDLSHNFIPAVTSPTEPSESISDASNTSPLQDVXX 1924
F E +P+ K + V P P N P+ T PT+ S + S D
Sbjct: 797 FEETIFPYPVSNSKTAWEYVEPTP------NTHPS-TEPTKTRNSQETTDDLSTNHD--- 846
Query: 1925 XXXXXXXXXXXXIPEPPNSAPVTDNPSXXXXXXXXXXXXXXXXXAHLKDFVGSKST--TP 2098
+ +P + + + HL D+ + T TP
Sbjct: 847 -----HDSIDLPLDQPSDRTTTSTHDQKFTNSSPRRSTRIKQTPLHLMDYQCNAITHKTP 901
Query: 2099 RHWCNLVSFSSLPVSHQAFSVHASTFSEPRSYNEASQNPAWVEAMNKEIDALQANGTWEA 2278
+ +S ++L S+ F + +EP +Y EAS++ WV+AM E+ AL N TW
Sbjct: 902 YPISSFISHNNLSKSYSTFCLSLLADTEPTTYAEASKHECWVKAMKNELTALANNKTWII 961
Query: 2279 CDLPPGKKALGNRWVYKIKLKSDGSLERFKGRLVVQGNHQREGVDYFDTFSPVVKMATVR 2458
DLP G K +G++WVYKIK K+DG+++R+K RLV +G +Q EGVD+ TFSPV KM T+R
Sbjct: 962 TDLPEGVKPIGSKWVYKIKRKADGTIDRYKARLVAKGYNQIEGVDFSQTFSPVAKMTTIR 1021
Query: 2459 SILAIAASKRWQIHQMDVNNAFLHGDLSEEVYMKMPLGIPNPDNK-VCRLRKSLYGLKQA 2635
++LAIA+ K W IHQ+DV+NAFLHGDL E VYM +P ++ VC+L+K LYGL+QA
Sbjct: 1022 TVLAIASIKNWHIHQLDVDNAFLHGDLDENVYMTVPQRFEGATSRQVCKLQKFLYGLRQA 1081
Query: 2636 SRQWFQKLSAALQDQGFTQSKNDYSLFLKTVDGQMTIVAVYVDDILVTGSDPTSISQLKA 2815
SRQW++KLS L G+ +D +LF KT T + VYVDDI+++G+ I K+
Sbjct: 1082 SRQWYEKLSHFLITIGYKHMPSDPTLFTKTTSASFTTLLVYVDDIVLSGNCLAEIESTKS 1141
Query: 2816 FLHQEFTIKDLGFLNYFLGLEVHYHDNGIILTQRKFTQELLADTGFLDAKPAVTPL-PQH 2992
LHQ F IKD+G L +FLGLEV + GI L QRK+ +LL DTG L KP+ P+ P +
Sbjct: 1142 QLHQAFGIKDIGVLKFFLGLEVAHSQQGITLCQRKYCLDLLNDTGNLGCKPSSIPMDPSN 1201
Query: 2993 MKFSDPCSPYLKDQSAYRSLIGKLNFLTHTRPDLTFAVQTLSQFLQNPQQIHLDGVHHLL 3172
D P+ + + YR+L+GKL +LT TRPD+ F VQ LSQFL P H H +L
Sbjct: 1202 RLHHDDSEPH-SNITEYRALVGKLLYLTSTRPDIAFPVQQLSQFLDAPTTAHFKAAHKVL 1260
Query: 3173 HYLKGTSGQGILLNGSQQLSLHAYSDSDWAACPISRRSVTGYVILFGGSPISWXXXXXXX 3352
YLKG G G+ + L L +SD+DW CP SRRS+TGY G S I W
Sbjct: 1261 RYLKGNPGTGLFFPRNASLQLMGFSDADWGGCPDSRRSITGYCFFIGQSLICWKSKKQLT 1320
Query: 3353 XXXXXXXXXXXXXXXXXXXLTWLVRLLEELGVHGLKPVTLHCDNQSALHIAKNPVFHERT 3532
L WL LL++L VH K L+CD+QSALHIA NPVFHERT
Sbjct: 1321 VSKSSSEAEYRALASATCELQWLSYLLKDLQVHIDKANVLYCDSQSALHIASNPVFHERT 1380
Query: 3533 KHIEIDCHFTRDKVMEGLIHLSYLPTQNQLADVLTKVLPSNQFQQLLSKLGMS 3691
KH++IDCH R+K+ GL+ L + NQ AD+LTK L F +L SKLG+S
Sbjct: 1381 KHLDIDCHIVREKLQAGLMKLLPISGYNQTADILTKALHPANFHRLFSKLGLS 1433