BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00017461
         (4474 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...  1079   0.0  
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa]                       1018   0.0  
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]  1002   0.0  
gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposo...   967   0.0  
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   957   0.0  
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   911   0.0  
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   907   0.0  
gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposo...   906   0.0  
gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposo...   906   0.0  
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   905   0.0  
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   902   0.0  
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         903   0.0  
gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposo...   902   0.0  
dbj|GAU33542.1| hypothetical protein TSUD_143350 [Trifolium subt...   890   0.0  
gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposo...   876   0.0  
gb|KYP43625.1| Retrovirus-related Pol polyprotein from transposo...   879   0.0  
gb|AIC77183.1| polyprotein [Gossypium barbadense]                     875   0.0  
gb|KYP50361.1| Retrovirus-related Pol polyprotein from transposo...   865   0.0  
gb|KYP35753.1| Retrovirus-related Pol polyprotein from transposo...   861   0.0  
gb|OMO68768.1| Integrase, catalytic core [Corchorus capsularis]       854   0.0  

>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF99717.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1335

 Score = 1079 bits (2790), Expect = 0.0
 Identities = 561/1134 (49%), Positives = 741/1134 (65%), Gaps = 34/1134 (2%)
 Frame = +1

Query: 1174 LSHVVVPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRS 1353
            ++  +VP+F GENYD W +KM TL  S  ++D V+N ++E    E LT EQ K   + R 
Sbjct: 1    MAQSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRM 60

Query: 1354 RNAAVLSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTK 1533
             +A  L +IQ+GV  S+FP+I+  KK+KEAW+ LK+EFQG  KV A+KLQTLRR ++N  
Sbjct: 61   SDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLL 120

Query: 1534 MKENESLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKT 1713
            MKE+E + DY SR+ +++NQM+ YG++I DQ++VEKILIS+PEK++ I+A  E +KDL  
Sbjct: 121  MKESEKVKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLSK 180

Query: 1714 LGIQELLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXX 1893
                    SL+S+E+R  +    +IE+AFQS L      PQN                  
Sbjct: 181  -------DSLESHEERKLQREGSSIENAFQSKLSFR---PQNSRFRGNFQKNGFPMRDRG 230

Query: 1894 XXXXQSYGSFRGQSSFDKRSFGDGNSHK-CSICKKDNHEXXXXXXXXXXXXXXXXQFGHL 2070
                  + S + +   ++R  G  +S+  C IC+K +H                   GH+
Sbjct: 231  YFQKNGF-SRQKEDGQERREKGTSSSNLWCDICQKSSHTTDMCWKKMTCNKCKRK--GHI 287

Query: 2071 EKFCRKKNQQQANFLEEKQENEN-VFFCHSANVERSDTWFLDSGCSNHMTGDESILVDIG 2247
             K+CR +   +ANF +EK+++E  VF CH+A  E+ D W +DSGC+NHM  D ++  ++ 
Sbjct: 288  AKYCRTREINRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMD 347

Query: 2248 TAGNSQVKLGNGAIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNLLSVGQLVEHGYIV 2427
            ++ ++++ +GNG+I Q +GKG ++V+T  G K+I DVLLVPDL QNLLS+GQL+EHGY V
Sbjct: 348  SSYHAKIHMGNGSIAQSEGKGTVAVQTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAV 407

Query: 2428 VFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHL 2607
             FE   C I ++ +N  L+ KI M +NR+F +   +    AL++   D + LWHKR+GHL
Sbjct: 408  YFEDFSCKILDR-KNNRLVAKINMEKNRNFLLRMNHTTQMALRSEV-DISDLWHKRMGHL 465

Query: 2608 NFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLC 2787
            N+++L LL  K MV GLP I      CEGC  GK  R  FP   AWRA   LELVH D+ 
Sbjct: 466  NYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHADIV 525

Query: 2788 GPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRS 2967
            G +   S G N YFI FIDD++RM WVYF+KEKS    IFKKFK  VE Q+   IK+LRS
Sbjct: 526  GKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRS 585

Query: 2968 DQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSF 3147
            DQG+EY SKEF+K+CE+ G+ RQLT  Y+ QQNGV ERKN+T+ +MA SM+ +KG+PKSF
Sbjct: 586  DQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSF 645

Query: 3148 WAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDE 3327
            WAEAV TAVY+LNRSPTKA+ N+TP EAW G+KP + H++VFGC+CY+Q+P QKR K D 
Sbjct: 646  WAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDN 705

Query: 3328 TSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG-PSFPTNKM- 3501
             S++CIFVGY+   K YRLY+L+ K +I+SRD IFD               P  PT  + 
Sbjct: 706  KSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDESATWNWKSPEASSTPLLPTTTIT 765

Query: 3502 ----------QDEAHVESDE-------NQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIYN 3630
                      + E H  S +       +  S D                R+ RS+ E+  
Sbjct: 766  LGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQISTPESAPRRVRSMVELLE 825

Query: 3631 AN----------FCH---VXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKD 3771
            +           FC+   V             W KAMEDEIH+IEKNNTWEL DRP D++
Sbjct: 826  STSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWELVDRPRDRE 885

Query: 3772 VIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQ 3951
            VIGVKWVYK K N DGSVQ+ KARLVAKG+ Q+PGIDY ET+APVAR++T+R II+LA Q
Sbjct: 886  VIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRTIIALAAQ 945

Query: 3952 KGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQ 4131
            K W +YQLDVKSAFLNG L EE+YV QP+GF V+G E KV++LKKALYGLKQAPRAWYSQ
Sbjct: 946  KRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPRAWYSQ 1005

Query: 4132 IDGYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYE 4311
            ID YF +KGF +S SEPTLYV   G +ILIV+LYVDDL++TGN++KM++DFK +MM  YE
Sbjct: 1006 IDKYFIQKGFAKSISEPTLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYE 1065

Query: 4312 MSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            MSDLGLL++FLGME++Q D+G+FI Q KY E ILK F M  CK   TPL+ NEK
Sbjct: 1066 MSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEK 1119



 Score =  224 bits (571), Expect = 2e-55
 Identities = 113/204 (55%), Positives = 143/204 (70%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDIMFAASLLSR+M +PSQ++    KR+LRY++GT D+GI ++      L G+ DSDW G
Sbjct: 1149 PDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAG 1208

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
            C DDMKSTSGY FSLGS    + +  +                   SQ +WLRRI ED+G
Sbjct: 1209 CLDDMKSTSGYAFSLGSAEAEYVAASKAV-----------------SQVVWLRRIMEDLG 1251

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
            EKQ+ PTTI+CDS SAIAI++NPV H RTKHIA+K+H+IREA++  EV+LEFC T++QLA
Sbjct: 1252 EKQYQPTTIYCDSKSAIAISENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLA 1311

Query: 541  DIFTKALPREKFQDLRRKLGVQPK 612
            DIFTKAL +EKF   R  +GV  K
Sbjct: 1312 DIFTKALSKEKFVRDRELIGVCKK 1335


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa]
          Length = 1314

 Score = 1018 bits (2632), Expect = 0.0
 Identities = 535/1133 (47%), Positives = 709/1133 (62%), Gaps = 33/1133 (2%)
 Frame = +1

Query: 1174 LSHVVVPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRS 1353
            ++  +VP+F GENYD W +KM TL  S  ++D V N ++E    E LT EQ K   + R 
Sbjct: 1    MAQSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVDNGYQEYSAGETLTAEQKKSLAEDRM 60

Query: 1354 RNAAVLSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTK 1533
             +A  L +IQ+GV  S+FP+I+  KK+KEAW+ LK+EFQG  KV A+KLQTLRR ++N  
Sbjct: 61   SDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLL 120

Query: 1534 MKENESLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKT 1713
            MKE+E + DY SR+ +++NQM+ YG++I DQ++VEKILIS+PEK++ I+A IE +KDL T
Sbjct: 121  MKESEKVKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLST 180

Query: 1714 LGIQELLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXX 1893
            L IQ+L+SSL+S+E+R  +    +IE+AFQS L      PQN                  
Sbjct: 181  LTIQQLMSSLESHEERKLQREGSSIENAFQSKLSFR---PQNSRFRGNFQKNGFPMRDRG 237

Query: 1894 XXXXQSYGSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLE 2073
                  + + +      +      ++  C I +K +H                   GH+ 
Sbjct: 238  YFQKNGFSTQKEDGQERREKSTSSSNLWCDISQKSSHTTDMCWKKMTCNKCKRK--GHIA 295

Query: 2074 KFCRKKNQQQANFLEEKQENEN-VFFCHSANVERSDTWFLDSGCSNHMTGDESILVDIGT 2250
            K+CR +   +ANF +EK+++E  VF CH+A  E+ D W +DSGC+NHM  D ++  ++ +
Sbjct: 296  KYCRTREINRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDS 355

Query: 2251 AGNSQVKLGNGAIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNLLSVGQLVEHGYIVV 2430
              ++++ +GNG+I Q +GKG ++V+T  G K+I DVLLVPDL QNLLS+GQL+EHGY V 
Sbjct: 356  LYHAKIHMGNGSIAQSEGKGTVAVQTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVY 415

Query: 2431 FEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHLN 2610
            FE   C I ++ +N  L+ KI M +NR+F +   +    AL++   D + LWHKR+GHLN
Sbjct: 416  FEDFSCKILDR-KNNRLVAKINMEKNRNFLLRMNHTTQMALRSEV-DISDLWHKRMGHLN 473

Query: 2611 FQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCG 2790
            +++L LL  K MV GLP I      CEGC  GK  +  FP   AWRA    ELVHTD+ G
Sbjct: 474  YRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIQASFPHSGAWRASAPFELVHTDIVG 533

Query: 2791 PMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSD 2970
             +   S G N YFI FIDD++RM WVYF+KEKS     FKKFK  VE Q+   IK+LRSD
Sbjct: 534  KVPTMSEGGNWYFITFIDDYTRMIWVYFLKEKSAALETFKKFKVMVENQSNRKIKVLRSD 593

Query: 2971 QGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFW 3150
            QG EY SKEF+K+CE+ G+ RQLTT Y+ QQNGV ERKN+T+ +MA SM+ +KG+PKSFW
Sbjct: 594  QGGEYISKEFEKYCENAGIRRQLTTGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFW 653

Query: 3151 AEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDET 3330
            AEAV TAVY+LNRSPTKA+ N+TP EAW G+KP + H++VF C+CY+Q+P QKR K D  
Sbjct: 654  AEAVNTAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFACICYAQVPAQKRVKFDNK 713

Query: 3331 SEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG-PSFPTNKM-- 3501
            S +CIFVGY+   K YRLY+L+ K +I+SRDV FD               P  PT  +  
Sbjct: 714  SNRCIFVGYADGIKGYRLYNLEKKKIIISRDVFFDESATWNWKSPEASSTPLLPTTTITL 773

Query: 3502 ---------QDEAHVESDE-------NQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIYNA 3633
                     + E H  S +       +  S D                R+ RS+ E+  +
Sbjct: 774  GQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQISTPESAPRRVRSMVELLES 833

Query: 3634 -------------NFCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDV 3774
                         N+  V             W KAMEDEIH+IEKNNTWE  DRP D++V
Sbjct: 834  TSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWEFVDRPRDREV 893

Query: 3775 IGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQK 3954
            IGVKWVYK K N DGSVQ+ KARLVAKG+ Q+PGIDY ET+APVAR++T+R II+LA QK
Sbjct: 894  IGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRTIIALAAQK 953

Query: 3955 GWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQI 4134
             W +YQLDVKSAFLNG L EE+YV QP+ F V+G E K                      
Sbjct: 954  RWKIYQLDVKSAFLNGYLDEEIYVEQPEWFSVQGGENK---------------------- 991

Query: 4135 DGYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEM 4314
                  KGF +S SEPTLYV   G +ILIV+LYVDDL++TGN+ KM++DFK +MM  YEM
Sbjct: 992  ------KGFAKSISEPTLYVNKTGTDILIVSLYVDDLIYTGNSDKMMQDFKKDMMHTYEM 1045

Query: 4315 SDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            SDLGLL++FLGME++Q D+G+FI Q KY E ILK F M  CK   TPL+ NEK
Sbjct: 1046 SDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEK 1098



 Score =  221 bits (563), Expect = 1e-54
 Identities = 112/204 (54%), Positives = 142/204 (69%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDIMFAASLLSR+M +PSQ++    KR+LRY++GT D+GI ++      L G+ DSDW G
Sbjct: 1128 PDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAG 1187

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
            C DDMKSTSGY FSLGS    + +  +                   SQ +WLRRI ED G
Sbjct: 1188 CLDDMKSTSGYAFSLGSAEAEYVAASKAV-----------------SQVVWLRRIMEDQG 1230

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
            EKQ+ PTTI+CDS SAIAI++NPV H RTKHIA+K+H+IREA++  EV+LEFC T++QLA
Sbjct: 1231 EKQYQPTTIYCDSKSAIAISENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLA 1290

Query: 541  DIFTKALPREKFQDLRRKLGVQPK 612
            DIFTKAL +EKF   +  +GV  K
Sbjct: 1291 DIFTKALSKEKFVRDKELIGVCKK 1314


>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
          Length = 1424

 Score = 1002 bits (2590), Expect = 0.0
 Identities = 498/817 (60%), Positives = 614/817 (75%), Gaps = 22/817 (2%)
 Frame = +1

Query: 2089 KNQQQANFLEEKQENENVFF-CHSANVERSDTWFLDSGCSNHMTGDESILVDIGTAGNSQ 2265
            KN QQA+  EEK+ +EN+F+ C S   ++++ WFLDSGC+NHMTG+++I +D+ T  NSQ
Sbjct: 388  KNNQQASCAEEKEADENMFYACQSVAEQKNNVWFLDSGCTNHMTGNKNIFLDMDTTINSQ 447

Query: 2266 VKLGNGAIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNLLSVGQLVEHGYIVVFEGEG 2445
            VK+GNG +V VKGKG + ++ ++G KYI DVLLVP L Q LLSVGQLVEHGY + FE   
Sbjct: 448  VKMGNGDLVNVKGKGTVGIQXKVGTKYIRDVLLVPALEQXLLSVGQLVEHGYKLHFENNE 507

Query: 2446 CSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHLNFQSLN 2625
            C+IY+K + + L++KI M +NRSFPI F+Y E+ AL+    +EA LWH+R GHLNF SL 
Sbjct: 508  CTIYDKEQRRNLVKKIKMEKNRSFPIVFKYVENVALRMEDVEEAWLWHRRFGHLNFNSLK 567

Query: 2626 LLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCGPMRNP 2805
            +L Q+ M                     HHR+ FPKGVAWRAK++LELVHTD+CGPM  P
Sbjct: 568  MLCQRKM---------------------HHRQSFPKGVAWRAKKVLELVHTDICGPMSTP 606

Query: 2806 SHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSDQGKEY 2985
            S GNN YF+LFIDDF+RMTWV+FMK+KS+VF IFKKFK+FVEKQ+G +IK LRSD+G EY
Sbjct: 607  SQGNNKYFVLFIDDFTRMTWVFFMKQKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEY 666

Query: 2986 NSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFWAEAVY 3165
             S +F  FCEDEG+ RQLT  YTPQQNGVVERKNQTV+EMAK+M++EKGLPK FWAEAV 
Sbjct: 667  TSSQFGNFCEDEGVERQLTVAYTPQQNGVVERKNQTVMEMAKAMLYEKGLPKIFWAEAVN 726

Query: 3166 TAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDETSEKCI 3345
            TAVYLLNR PTKAL NKTP+EAW+GRKPSVRH KVFGC+CYSQ+PKQ+R KLDETSEKCI
Sbjct: 727  TAVYLLNRCPTKALLNKTPIEAWSGRKPSVRHFKVFGCLCYSQVPKQRRSKLDETSEKCI 786

Query: 3346 FVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPSFPTNKMQDEAHV-- 3519
            F+GYSS+SK YRLY+LKT  +I+SRDVIFD               +   +++Q +A V  
Sbjct: 787  FMGYSSQSKGYRLYNLKTXKLIISRDVIFDEKVAWNWEEGKILKKTILVDELQTKAPVET 846

Query: 3520 -----------ESDENQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIY-NANFCHVXXXXX 3663
                       ES  + P    +              RK RSLT++Y   N C V     
Sbjct: 847  GNGSTSTSSPQESPRSVPLSPSIESPTSXSSSPSSTPRKMRSLTDVYERCNLCIVEPQSF 906

Query: 3664 XXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKV------KYNADGSV 3825
                    W+KAME EI VIEKN TW+L ++P DK++IGVKW+++V      KY++DG V
Sbjct: 907  EEAIKDEDWRKAMEKEIDVIEKNETWQLVEKPKDKEIIGVKWIFRVKWIFRXKYHSDGRV 966

Query: 3826 QRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGE 4005
            QR KARLVAKGYSQQPG D+ ETFAPVAR+DT+R II++A QKGWLLYQLD+KSAFLNG+
Sbjct: 967  QRLKARLVAKGYSQQPGXDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGK 1026

Query: 4006 LKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPT 4185
            L+ E+YV QPQGF V+G+E KVYKLKKALYGLKQAPRAWY+QID YF E GF +SKSEPT
Sbjct: 1027 LEXEIYVEQPQGFVVDGEENKVYKLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPT 1086

Query: 4186 LYVKSQ-GENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQ 4362
            LYVKS+    ILIVALYVDDL+FTGN++KM+E F+NEMM+KYEMSD+GLL++FLG+E+YQ
Sbjct: 1087 LYVKSKDNSQILIVALYVDDLIFTGNDEKMVEKFRNEMMKKYEMSDMGLLHYFLGIEVYQ 1146

Query: 4363 DDDGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            ++DGVFICQ++YVE ILK F M+ C    TPLVVNEK
Sbjct: 1147 EEDGVFICQKRYVEHILKKFGMAGCNXVSTPLVVNEK 1183



 Score =  262 bits (670), Expect = 2e-67
 Identities = 130/208 (62%), Positives = 149/208 (71%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDIMFAASLLSRFMH PS +H+G  KR+LRYLQGT + GIK+ +N  + L G CDSDWGG
Sbjct: 1213 PDIMFAASLLSRFMHYPSHLHLGAAKRVLRYLQGTVELGIKYFRNIEVKLIGHCDSDWGG 1272

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
            C DDMKSTSGY FSLGSGV  W SKKQ +                TSQAIWLRRI EDI 
Sbjct: 1273 CIDDMKSTSGYAFSLGSGVISWVSKKQGSVAQSSAEAEYISASLATSQAIWLRRILEDIK 1332

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
            EKQ   T + CD+ SAIAIAKN V HSRT+HIA+K+HFI+E I DGEVQL +C + +Q A
Sbjct: 1333 EKQNEATYLLCDNKSAIAIAKNXVFHSRTRHIAVKYHFIKEVISDGEVQLMYCKSEEQXA 1392

Query: 541  DIFTKALPREKFQDLRRKLGVQPKHITG 624
            DIFTKALP EK    R+ LGV+  HI G
Sbjct: 1393 DIFTKALPLEKLVHFRKLLGVEELHIRG 1420



 Score =  219 bits (558), Expect = 7e-54
 Identities = 112/201 (55%), Positives = 149/201 (74%)
 Frame = +1

Query: 1198 FDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLSM 1377
            F+GENYD+WCVKM+TLF S DV+D V+N F+EP     + + Q+K+ K+    +A  L  
Sbjct: 214  FNGENYDFWCVKMKTLFMSQDVWDLVENGFDEP----PVEKXQLKELKKM---DAKALLF 266

Query: 1378 IQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESLN 1557
            IQ+GV  +IFP+IMR  KAKEAW++L+QEFQGD + R++KLQ LRR+ EN KMKENE+LN
Sbjct: 267  IQQGVGNNIFPRIMRASKAKEAWDILQQEFQGDKRTRSVKLQALRRELENMKMKENETLN 326

Query: 1558 DYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELLS 1737
            ++SS+  +L+NQMKSYG+EI D+RIVEK+LIS+P KFDPI+AVIE TKDL  L  QEL  
Sbjct: 327  EFSSKFMELVNQMKSYGEEISDKRIVEKLLISLPSKFDPIVAVIEETKDLSLLSAQELF- 385

Query: 1738 SLKSYEQRMTRHSDKAIESAF 1800
              K+ +Q       +A E+ F
Sbjct: 386  GFKNNQQASCAEEKEADENMF 406


>gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1120

 Score =  967 bits (2500), Expect = 0.0
 Identities = 507/1061 (47%), Positives = 696/1061 (65%), Gaps = 11/1061 (1%)
 Frame = +1

Query: 1324 QMKDFKQKRSRNAAVLSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQ 1503
            +++D +QK   +A  L ++Q+ V  +I  +IM +  AK+AW++L++EF+G+ +VR++KL 
Sbjct: 1    KLEDCEQK---DAQALFVLQQAVGETIARRIMDVDTAKKAWDILEEEFEGNEQVRSVKLH 57

Query: 1504 TLRRDYENTKMKENESLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIA 1683
             LRR++E  KMKE+E++ +Y  R+ ++IN+MK YG EI+++R+VEK        +D I+A
Sbjct: 58   YLRREFETIKMKESETIEEYYGRIKEIINKMKLYGKEIKEKRVVEK--------YDSIVA 109

Query: 1684 VIENTKDLKTLGIQELLSSLKSYEQRMTRHSD-KAIESAFQSSLQGDKKPPQNHXXXXXX 1860
             IE + D  +L + +L+  LK+++ R+    D  + E+AFQS L+   +  ++       
Sbjct: 110  SIETSSDPSSLSVNKLIGLLKAHKARLNSCVDTNSNENAFQSKLKLQSRNKED------- 162

Query: 1861 XXXXXXXXXXXXXXXQSYGSFRGQSSFDKRSFGDGNSHK---CSICKKDNHEXXXXXXXX 2031
                           ++ G +      D R+F      K   C IC K            
Sbjct: 163  ------------GGKKNAGKYSRNK--DSRNFSGNKKDKYPLCGICNKP----------- 197

Query: 2032 XXXXXXXXQFGHLEKFCRKKNQQQANFLEEKQENENVFFCHSANVERSD-TWFLDSGCSN 2208
                      GH EK C      +ANF+EE  + + +F+ +    +  D +W+LDSGCSN
Sbjct: 198  ----------GHAEKDC----WHRANFVEEHNQEQRLFYANQEFCDNGDGSWYLDSGCSN 243

Query: 2209 HMTGDESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNL 2388
            HM  D++I  DI  +   +V+LGNG +V+ +GKG + V+T+ G + I DVLLVP+L +NL
Sbjct: 244  HMAKDQNIFKDIDNSVKVKVRLGNGTMVESQGKGTVVVETKKGTRLIKDVLLVPNLKENL 303

Query: 2389 LSVGQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTT 2568
            LS+GQ++E+GY + FE + C IY+  R  E+ Q     RNR FP++F    + A+     
Sbjct: 304  LSIGQMMENGYSLHFERDICKIYDSKR-VEIGQVKMEKRNRIFPLSFNRGTNIAMNVEV- 361

Query: 2569 DEALLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWR 2748
            D++ LWH+R GH N  +L LLHQK M+  LP + E    CEGC LGK HR  F    AWR
Sbjct: 362  DDSWLWHRRFGHFNIHALKLLHQKGMMRDLPSLKENNEACEGCLLGKQHRSSFSTSKAWR 421

Query: 2749 AKEILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFV 2928
            AK++LEL+HT++CGPMR PSH NN YFILFI DFSRMTWVYF+K KS+VFGIFKKFK  V
Sbjct: 422  AKDLLELIHTNVCGPMRTPSHTNNRYFILFIYDFSRMTWVYFLKTKSEVFGIFKKFKALV 481

Query: 2929 EKQTGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMA 3108
            EKQ+G  IK+LRSD+GKEY S EFDKFCEDEG+ RQLT  YTPQQNGV+ERKN+ V+EM 
Sbjct: 482  EKQSGKQIKVLRSDRGKEYTSCEFDKFCEDEGIERQLTVAYTPQQNGVLERKNRIVMEME 541

Query: 3109 KSMMHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCY 3288
            +SM+ EKGLP  FWAEAVYT VYLLNR PT A    TP+E+ +G KP+ +HL+VFG +CY
Sbjct: 542  RSMLKEKGLPNIFWAEAVYTVVYLLNRFPTNAFRENTPIESCSGNKPATKHLRVFGSICY 601

Query: 3289 SQIPKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXX 3468
              +P +KR+KL++ + + IF+GYSS+SK YR+Y+L+TK + +SRD+  D           
Sbjct: 602  IHVPDEKRHKLEDKTVRGIFLGYSSQSKGYRVYNLQTKKLTISRDIEVDENATWNWEEKR 661

Query: 3469 KEGPSFPTNKMQDEAHVESDENQ-----PSHDEVXXXXXXXXXXXXXXRKFRSLTEIY-N 3630
             E  +      Q       D NQ     P    +              R+ RSL +IY  
Sbjct: 662  IEKKTIYMPINQPTTSSLEDNNQDIVISPESPRI-VPQQEESSPESTPRRVRSLVDIYET 720

Query: 3631 ANFCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYN 3810
             N   +             W KAME+EI +IEKNNTWEL D P  KD+IGVKWVYK K N
Sbjct: 721  CNLAILEPGSFEEAANQEVWVKAMEEEIKMIEKNNTWELVDFPHGKDIIGVKWVYKTKLN 780

Query: 3811 ADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSA 3990
             DG++Q++KARLVAKGYSQ+PG+DY+ETFAPVAR+DT+R +I+LA  KGW +YQLDVKSA
Sbjct: 781  PDGTIQKHKARLVAKGYSQKPGVDYNETFAPVARLDTIRTLIALAAHKGWNIYQLDVKSA 840

Query: 3991 FLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQS 4170
            FLNG L+EE+YV QP GF ++G E KV +LKKALYGLKQAPRAWYS+ID YF + GF +S
Sbjct: 841  FLNGVLEEEIYVEQPPGFVMKGHEGKVLRLKKALYGLKQAPRAWYSKIDQYFTD-GFRRS 899

Query: 4171 KSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGM 4350
            KSEPTLY+K+QG++ L+++LYVDDL++TG N  M+ +FK +MM+ +EM+DLGL+++FLG+
Sbjct: 900  KSEPTLYIKTQGQHTLLLSLYVDDLIYTGTNTNMMMEFKEDMMKTFEMTDLGLMSYFLGI 959

Query: 4351 EIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            E+ Q +DG+FI Q+KY E +LK F+M  CKP  T LV NEK
Sbjct: 960  EVSQRNDGIFISQKKYTEALLKKFNMYGCKPVRTLLVTNEK 1000



 Score =  122 bits (305), Expect = 5e-24
 Identities = 57/89 (64%), Positives = 66/89 (74%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDIM+A SLLSRFM  P+QIH G GKRILRYLQGT++FGI ++      + G+ D+DW  
Sbjct: 1030 PDIMYATSLLSRFMQKPNQIHYGTGKRILRYLQGTREFGIWYKNMTKSRMIGYTDNDWAR 1089

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQT 267
              DDMKSTSGY FSLGSG F W SKKQ T
Sbjct: 1090 SIDDMKSTSGYAFSLGSGFFSWVSKKQAT 1118


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
 gb|AAP51797.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1350

 Score =  957 bits (2474), Expect = 0.0
 Identities = 526/1132 (46%), Positives = 689/1132 (60%), Gaps = 32/1132 (2%)
 Frame = +1

Query: 1174 LSHVVVPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRS 1353
            ++  +VP+F GENYD W +KM TL  S  ++D V+N ++E    E LT EQ K   + R 
Sbjct: 1    MAQSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRM 60

Query: 1354 RNAAVLSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTK 1533
             +A  L +IQ+GV  S+FP+I+  KK+KEAW+ LK+EFQG  KV A+KLQTLRR ++N  
Sbjct: 61   SDAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLL 120

Query: 1534 MKENESLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKT 1713
            MKE+E + DY  R+ +++NQM+ YG++I DQ++VEKILIS+PEK++ I+A IE +KDL T
Sbjct: 121  MKESEKVKDYFPRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLST 180

Query: 1714 LGIQELLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXX 1893
            L IQ+L+SSL+S+E+R  +    +IE+AFQS L      PQN                  
Sbjct: 181  LTIQQLMSSLESHEERKLQREGSSIENAFQSKLSFR---PQNSRFR-------------- 223

Query: 1894 XXXXQSYGSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLE 2073
                   G+F+ ++ F  R  G    +  S  K+D  E                    LE
Sbjct: 224  -------GNFQ-KNEFPMRDRGYFQKNGFSRQKEDGQERREK---------------ELE 260

Query: 2074 KFCRKKNQQQANFLEEKQENENVFFCHSANVERSDTWFLDSGCSNHMTGDESILVDIGTA 2253
            K       ++      K+  E VF CH+A  E+ D W +DSGC+NHM  D ++  ++ ++
Sbjct: 261  KLIGLIFHKK-----RKKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSS 315

Query: 2254 GNSQVKLGNGAIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNLLSVGQLVEHGYIVVF 2433
             ++++ +GNG+I Q +GK                                          
Sbjct: 316  YHAKIHMGNGSIAQSEGKDF---------------------------------------- 335

Query: 2434 EGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHLNF 2613
                C I ++ +N  L+ KI M +NR+F +   +    AL++   D + LWHKR+GHLN+
Sbjct: 336  ---SCKILDR-KNNRLVAKINMEKNRNFLLRMNHPTQMALRSEI-DISDLWHKRMGHLNY 390

Query: 2614 QSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCGP 2793
            ++L LL  K MV GLP I      CEGC  GK  R  FP   AWRA   LELVHTD+ G 
Sbjct: 391  RALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGK 450

Query: 2794 MRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSDQ 2973
            +   S G N YFI FIDD++RM WVYF+KEKS    IFKKFK  VE Q+   IK+LRSDQ
Sbjct: 451  VPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQ 510

Query: 2974 GKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFWA 3153
            G EY SKEF+K+CE+ G+ RQLT  Y+ QQNGV ERKN+T+ +MA SM+ +KG+PKSFWA
Sbjct: 511  GGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFWA 570

Query: 3154 EAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDETS 3333
            EAV TA+Y+LNRSPTKA+ N+TP EAW G+KP + H++VFGC+CY+Q+P QKR K D  S
Sbjct: 571  EAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKS 630

Query: 3334 EKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG-PSFPTNKM--- 3501
            + CIFVGY+   K YRLY+L+ K +I+SRDVIFD               P  PT  +   
Sbjct: 631  DWCIFVGYADGIKGYRLYNLEKKKIIISRDVIFDESATWNWKSPEASSTPLLPTTTITLG 690

Query: 3502 QDEAH----VESDENQP-----------SHDEVXXXXXXXXXXXXXXRKFRSLTEIYNAN 3636
            Q   H    VE   + P           S D                R+ RS+ E+  + 
Sbjct: 691  QPHMHGTHGVEDHTSSPQSSSPMSSSSASSDSSPSSEEQISTPESAPRRVRSMVELLEST 750

Query: 3637 ----------FCH---VXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVI 3777
                      FC+   V             W KAMEDEIH+IEKNNTWEL DRP D+ VI
Sbjct: 751  SQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWELVDRPRDRKVI 810

Query: 3778 GVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKG 3957
            GVKWVYK K N DGSVQ+ KARLVAKG+ Q+PGIDY ET+APVAR++T+R II+LA QK 
Sbjct: 811  GVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRTIIALAAQKR 870

Query: 3958 WLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQID 4137
            W +YQLDVKSAFLNG L EE+YV QP+GF V+G E KV++LKKALYGLKQAPRAWYSQID
Sbjct: 871  WKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPRAWYSQID 930

Query: 4138 GYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMS 4317
             YF +KGF           KS   +ILIV+LYVDDL++T N++KM++DFK +MM  YEMS
Sbjct: 931  QYFIQKGF----------AKSISTDILIVSLYVDDLIYTANSEKMMQDFKKDMMHTYEMS 980

Query: 4318 DLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            DLGLL++FLGME++Q D+G+FI Q KY E ILK F M   K   TPL+ NEK
Sbjct: 981  DLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNYKSVTTPLLPNEK 1032



 Score =  136 bits (343), Expect = 2e-28
 Identities = 67/135 (49%), Positives = 87/135 (64%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDIMFAASLLSR+M +PSQ++    KR+LRY++GT D+GI ++      L G+ DSDW G
Sbjct: 1062 PDIMFAASLLSRYMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAG 1121

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
            C DDMKSTSGY FSLGS    + +  +                   SQ +WLRRI ED+G
Sbjct: 1122 CLDDMKSTSGYAFSLGSAEAEYVAASK-----------------AVSQVVWLRRIMEDLG 1164

Query: 361  EKQFNPTTIFCDSMS 405
            EKQ+ PTTI+CD ++
Sbjct: 1165 EKQYQPTTIYCDDLA 1179


>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  911 bits (2355), Expect = 0.0
 Identities = 499/1112 (44%), Positives = 677/1112 (60%), Gaps = 19/1112 (1%)
 Frame = +1

Query: 1195 IFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLS 1374
            + +GE Y++W +KM+TLF S D++D V+N +  P +  +L E   KD K         L 
Sbjct: 132  VVEGECYEFWSIKMKTLFKSQDLWDLVENGYPYPDEEARLKENTKKDSK--------ALF 183

Query: 1375 MIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESL 1554
             IQ+ +  SIF KI     AKEAW  L+  FQG  KV  +KLQ+LRRD+E   MK  ES 
Sbjct: 184  FIQQAIHESIFSKIAVATTAKEAWTTLETAFQGSSKVITVKLQSLRRDFETLHMKNGESX 243

Query: 1555 NDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELL 1734
             D+ SR+  ++NQM+SYG++I DQ +V K+L S+  KFD ++A IE +KDL T    EL+
Sbjct: 244  QDFLSRVAAIVNQMRSYGEDILDQTVVAKVLRSLTPKFDHVVAXIEESKDLSTYSFDELM 303

Query: 1735 SSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQSY 1914
             SL+S+E R++   DK  E  F +  +G+    +N                      +  
Sbjct: 304  GSLQSHEVRLSXTEDKNEEKXFYT--KGETSDXKNGGREXTGRGRGRGGAHGRGGRGRGR 361

Query: 1915 GSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLEKFCRKKN 2094
            G  +G          + ++  C  CK+                     FGH++  C KK 
Sbjct: 362  GDAQGDQRQSTEKSRNKSNIXCYYCKR---------------------FGHVQAECWKKE 400

Query: 2095 QQ--QANFLEEKQENENVFFCHSANVERSDT-WFLDSGCSNHMTGDESILVDIGTAGNSQ 2265
            +Q  QAN++E++++   +F  ++  V  S+  WFLDSGCSNHMTG +S+  ++  +    
Sbjct: 401  RQEKQANYVEQEEDQVKLFMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLFKELDESHKLX 460

Query: 2266 VKLGNGAIVQVKGKGKISVKTEIG-IKYINDVLLVPDLTQNLLSVGQLVEHGYIVVFEGE 2442
            VKLG+   VQV+GKG ++V    G +K + +V  +P LT+ L+  G              
Sbjct: 461  VKLGDDXQVQVEGKGTVAVNNGHGNVKLLYNVYFIPSLTEKLVKCG-------------- 506

Query: 2443 GCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHLNFQSL 2622
              + Y+K ++ +++  + M  N+ FP+     E  AL    T E+ LWH R GHLN + L
Sbjct: 507  --ATYDK-KSDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGL 563

Query: 2623 NLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCGPMRN 2802
             LL +K MV  LP+I  +  VCEGC  GK  +KPFPKG + RA   LE++H DLCGPM+ 
Sbjct: 564  KLLSKKEMVFELPKIDSVN-VCEGCIYGKQSKKPFPKGRSRRASSCLEIIHADLCGPMQT 622

Query: 2803 PSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSDQGKE 2982
             S G + YF+LF DD SRM+WVYF++ K++ F  FKKFK FVEKQ+G  IK+LR+D+  E
Sbjct: 623  ASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRXGE 682

Query: 2983 YNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFWAEAV 3162
            + S +F  FCE+EG+HR+LTT Y+P+QNGV ERKN+TVVEMA+SMM  K L   FWAE V
Sbjct: 683  FLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMXAKNLSNHFWAEGV 742

Query: 3163 YTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDETSEKC 3342
             TAVYLLN SPTKA+ N+TP EAW GRKP V HLKVFG V Y+      R KLDE S KC
Sbjct: 743  ATAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAYTLXBSHNRSKLDEKSVKC 802

Query: 3343 IFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPSFPTNKMQDEAHVE 3522
            IF+GY S+SK Y+LY+  +  +IVSR+V+FD           ++G     +   + A  E
Sbjct: 803  IFIGYCSQSKGYKLYNPVSGKIIVSRNVVFD-EKASXTWRVSEDGALVEISSESEMAQSE 861

Query: 3523 SDE------------NQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIYNAN--FCHVXXXX 3660
              +            + PS   +              RKFRSL +IY             
Sbjct: 862  DQQPSVQIPXSPTPSHSPSSPNLSXSSSSQSSEETPPRKFRSLRDIYETTQVLFVADPTT 921

Query: 3661 XXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSVQRNKA 3840
                     W  AM++EI  IEKN TWEL + P DK+VIGVKWV++ KY ADGS+Q++KA
Sbjct: 922  FEEAVEKEEWCSAMKEEIAAIEKNETWELVELPEDKNVIGVKWVFRTKYLADGSIQKHKA 981

Query: 3841 RLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGELKEEV 4020
            RLVAKGY+QQ G+DYD+TF+PVAR +TVR +++LA    W +YQ DVKSAFLNGEL EEV
Sbjct: 982  RLVAKGYAQQHGVDYDDTFSPVARFETVRTLLALAAHMHWCVYQFDVKSAFLNGELVEEV 1041

Query: 4021 YVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPTLYVKS 4200
            Y +QP+GF V  KEE VY+LK ALYGLKQAPRAWYS+ID YF E GF++SKSEP LY+K 
Sbjct: 1042 YXSQPEGFIVPDKEEHVYRLKXALYGLKQAPRAWYSKIDSYFVENGFEKSKSEPNLYLKR 1101

Query: 4201 QGEN-ILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQDDDGV 4377
            QG+N +LI+ LYVDD+++ G++  +I +FK  M +K+EMSDLGLL+ FLG+E+ Q +DGV
Sbjct: 1102 QGKNDLLIICLYVDDMIYMGSSSSLINEFKACMKKKFEMSDLGLLHFFLGLEVKQVEDGV 1161

Query: 4378 FICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            F+ Q KY   +LK F+M  CK    P+  NEK
Sbjct: 1162 FVSQRKYAVDLLKKFNMLNCKVVAIPMNSNEK 1193



 Score =  189 bits (481), Expect = 1e-44
 Identities = 93/201 (46%), Positives = 125/201 (62%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI FA  ++SRFMH PS+ H+G  KR+LRY+ GT DF I         L G+ DSDW G
Sbjct: 1223 PDIAFAVGVISRFMHCPSKQHLGATKRLLRYIAGTYDFRIWXGHVQEFKLVGYTDSDWAG 1282

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
            C +D KSTSGY+FSLGS  +   +                       QA+WLRRI  DI 
Sbjct: 1283 CLEDRKSTSGYMFSLGSAEYTVATSS-------------------ACQAVWLRRILADIN 1323

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
            ++   PT I+CD+ +AIA+ KNP +H RTKH+ ++ HFIR+ + +G+V L++C TN+Q+A
Sbjct: 1324 QEHEEPTVIYCDNKAAIAMTKNPAYHGRTKHVDIRVHFIRDLVVEGKVVLQYCNTNEQVA 1383

Query: 541  DIFTKALPREKFQDLRRKLGV 603
            D+ TKAL R+K    R KLGV
Sbjct: 1384 DVLTKALSRDKHVYFRSKLGV 1404



 Score =  112 bits (279), Expect = 7e-21
 Identities = 59/154 (38%), Positives = 79/154 (51%)
 Frame = +1

Query: 40  MHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGGCTDDMKSTSGYIF 219
           MH  S+ H+G   R+LRY+ GT DF I +       L G+ DSDW G             
Sbjct: 1   MHCSSKQHLGAAXRLLRYIAGTYDFRIWYGHVQEFKLVGYTDSDWAGXV----------- 49

Query: 220 SLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIGEKQFNPTTIFCDS 399
                  CW SKKQ                    QA+WLRRI  DI ++    T I+CD+
Sbjct: 50  -------CWXSKKQAVTXLSSSEAEYTAXTSSACQAVWLRRILXDINQEHEEXTVIYCDN 102

Query: 400 MSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGE 501
            +AIA+ KNP +H RTKH+ ++ HFIR+ + +GE
Sbjct: 103 KAAIAMTKNPAYHGRTKHVDIRVHFIRDLVVEGE 136


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  907 bits (2344), Expect = 0.0
 Identities = 483/1129 (42%), Positives = 689/1129 (61%), Gaps = 39/1129 (3%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAV 1368
            VP+    NYD W ++M+ +  + DV++ V+  F EP +   L++ Q    +  R R+   
Sbjct: 10   VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKA 69

Query: 1369 LSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENE 1548
            L +I +G+    F K++    AKEAWE L+  ++G  +V+ ++LQTLR ++E  +MKE E
Sbjct: 70   LCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGE 129

Query: 1549 SLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQE 1728
             ++DY SR+  + N +K  G++++D RI+EK+L S+  KF+ I+ VIE TKDL+ + I++
Sbjct: 130  LVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQ 189

Query: 1729 LLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ 1908
            LL SL++YE++  +  D  +E      +  ++                           +
Sbjct: 190  LLGSLQAYEEKKKKKED-IVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 1909 SY---------GSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQF 2061
             +          S RG+     +S  D +S KC  C K                     F
Sbjct: 249  PHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGK---------------------F 287

Query: 2062 GHLEKFCR----KKNQQQANFLEEKQENENVFFCHSANVER---SDTWFLDSGCSNHMTG 2220
            GH    C+    KK +++AN++EEK + E++    S   +    +  W+LDSG SNHM G
Sbjct: 288  GHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCG 347

Query: 2221 DESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSV 2397
             +S+  ++  +    V LG+ + ++VKGKG I ++ + G  ++I++V  +P +  N+LS+
Sbjct: 348  RKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSL 407

Query: 2398 GQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEA 2577
            GQL+E GY +  +    SI ++  N  L+ K+ M +NR F +  R +    LK    +E+
Sbjct: 408  GQLLEKGYDIRLKDNNLSIRDQESN--LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465

Query: 2578 LLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKE 2757
             LWH R GHLNF  L LL +K MV GLP I+    VCEGC LGK  +  FPK  + RA++
Sbjct: 466  WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 2758 ILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQ 2937
             LEL+HTD+CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF IFKKFK  VEK+
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 2938 TGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSM 3117
            +G  IK +RSD+G E+ SKEF K+CED G+ RQLT   +PQQNGVVERKN+T++EMA+SM
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSM 645

Query: 3118 MHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQI 3297
            +  K LPK  WAEAV  AVYLLNRSPTK++  KTP EAW+GRKP V HL+VFG + ++ +
Sbjct: 646  LKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 705

Query: 3298 PKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG 3477
            P +KR KLD+ SEK IF+GY + SK Y+LY+  TK  I+SR+++FD           ++ 
Sbjct: 706  PDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 765

Query: 3478 PSFPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXR-----------KFRSLTEI 3624
              FP        H E DE +P+ +E                           +FRS+ E+
Sbjct: 766  NFFP--------HFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL 817

Query: 3625 YNAN-----------FCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKD 3771
            Y              F                W+ AM++EI  I+KN+TWELT  P    
Sbjct: 818  YEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877

Query: 3772 VIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQ 3951
             IGVKWVYK K N+ G V+R KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q
Sbjct: 878  AIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQ 937

Query: 3952 KGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQ 4131
              W ++Q+DVKSAFLNG+L+EEVY+ QPQG+ V+G+E+KV +LKK LYGLKQAPRAW ++
Sbjct: 938  NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTR 997

Query: 4132 IDGYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYE 4311
            ID YFKEK F +   E  LY+K Q E+ILI  LYVDDL+FTGNN  + E+FK EM +++E
Sbjct: 998  IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFE 1057

Query: 4312 MSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            M+D+GL++++LG+E+ Q+D+G+FI QE Y +++LK F M +  P  TP+
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPM 1106



 Score =  192 bits (487), Expect = 2e-45
 Identities = 92/208 (44%), Positives = 127/208 (61%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M +P+  H    KRILRY++GT +FG+ +   ++  L G+ DSDWGG
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSG++F +G   F W SKKQ                     AIWLR + +++ 
Sbjct: 1201 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1260

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT IF D+ SAIA+AKNPV H R+KHI  ++H+IRE +   +VQLE+  T+DQ+A
Sbjct: 1261 LPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVA 1320

Query: 541  DIFTKALPREKFQDLRRKLGVQPKHITG 624
            D FTK L RE F  +R  LGV    + G
Sbjct: 1321 DFFTKPLKRENFIKMRSLLGVAKSSLRG 1348


>gb|KYP69041.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score =  906 bits (2342), Expect = 0.0
 Identities = 483/1118 (43%), Positives = 682/1118 (61%), Gaps = 28/1118 (2%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAV 1368
            VP+    NYD W ++M  L  + DV++ V+    EP + E L++ Q    +  R R+   
Sbjct: 10   VPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKA 69

Query: 1369 LSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENE 1548
            L +I +G+    F KI  +K AKEAWE LK  ++G  +V+ ++LQTLR ++E   MKE E
Sbjct: 70   LCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGE 129

Query: 1549 SLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQE 1728
             ++DY SR+  + N +K  G++++D RI+EKIL S+  KF+ I+ + E TKDL+ + I++
Sbjct: 130  LVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQ 189

Query: 1729 LLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ 1908
            LL SL++YE++  +  ++ +E  F++ +   K+   ++                     +
Sbjct: 190  LLGSLQAYEEKKKK-KEEIVEQVFKAHVDSRKEENAHNQSRRSYSQEQGRGRAYGHGQGR 248

Query: 1909 --SYGSFRGQSSFDKRSFGDGNSH------KCSICKKDNHEXXXXXXXXXXXXXXXXQFG 2064
              +  + RG+SS   R  G+ NS       KC  C K                     FG
Sbjct: 249  RPNNNNQRGESSNRGRGRGNPNSRYDKSRIKCYNCNK---------------------FG 287

Query: 2065 HLEKFCRKKN----QQQANFLEEK-QENENVFFCHSANVERSDT-WFLDSGCSNHMTGDE 2226
            H    CR  N    +++AN+ EE+ QE+  +   +    +  D  W+LDSG SNHM G  
Sbjct: 288  HYASECRAPNKNKVEEKANYAEERCQEDGTLLLAYKGQDKGEDNQWYLDSGASNHMCGKR 347

Query: 2227 SILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSVGQ 2403
            S+ V++  +    V  G+ + V V+GKG + ++ + G  ++I++V  VP +  N+LS+GQ
Sbjct: 348  SMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQ 407

Query: 2404 LVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALL 2583
            L+E GY +  +    SI  +      + K+ M RNR F +  + +    LK    D++ L
Sbjct: 408  LLEKGYDIQLKNNNLSI--RDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWL 465

Query: 2584 WHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEIL 2763
            WH R GHLNF+ L LL +K MV GLP I     VCEGC LGK  R  FPK    RA++ L
Sbjct: 466  WHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPL 525

Query: 2764 ELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTG 2943
            EL+HTD+CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF  FKKFK  VEK++G
Sbjct: 526  ELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESG 585

Query: 2944 SFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMH 3123
              IK LRSD+G E+ SKEF K+CED G+ RQLT   +PQQNGV ERKN+T++EMA+SM+ 
Sbjct: 586  LLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 645

Query: 3124 EKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPK 3303
             K LPK FWAEAV  AVYL NRSPT+++  KTP EAW+GRKP + HL+VFG + +  +P 
Sbjct: 646  SKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPD 705

Query: 3304 QKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPS 3483
            +KR KLD+ SEK IF+GY + SK Y+LY+  ++  I+SR+V+FD           ++   
Sbjct: 706  EKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTF 765

Query: 3484 FPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXR--KFRSLTEIYNAN------- 3636
            FP  +  D    +  +  P+                  R  +FRSL EIY A        
Sbjct: 766  FPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSERMPRFRSLQEIYEATENLDNVT 825

Query: 3637 ----FCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVK 3804
                F                W+ AM++EI  I+KN+TWEL   P +   IGVKWVYK K
Sbjct: 826  LFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAK 885

Query: 3805 YNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVK 3984
             ++ G VQR KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q  W ++Q+DVK
Sbjct: 886  KDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVK 945

Query: 3985 SAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFD 4164
            SAFLNG L+EEVY+ QPQG+EV+G+E+KV +LKKALYGLKQAPRAW  +ID YFKE  F 
Sbjct: 946  SAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQAPRAWNVRIDKYFKEANFI 1005

Query: 4165 QSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFL 4344
            +   E  LY+K+QG++ILIV LYVDDL+FTGNN  M E+FK +M +++EM+D+GL+ ++L
Sbjct: 1006 KCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYL 1065

Query: 4345 GMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            G+E+ Q ++G+FI QE Y + +LK F + +  P  TP+
Sbjct: 1066 GIEVKQGNEGIFITQESYAKDLLKKFKLDDANPVGTPM 1103



 Score =  190 bits (482), Expect = 7e-45
 Identities = 91/202 (45%), Positives = 126/202 (62%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M  P+  H+   KRILRY++GT  FG+ +  + +  L G+ DSDW G
Sbjct: 1138 PDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSG 1197

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSG++F +G   F W SKKQ                     AIWLR + +++ 
Sbjct: 1198 DMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1257

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT I+ D+ SAIA+AKNPV H R+KHI  ++H+IRE I + +VQ+E+  T+DQ+A
Sbjct: 1258 LPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVA 1317

Query: 541  DIFTKALPREKFQDLRRKLGVQ 606
            DIFTK L +E F  LR  LGVQ
Sbjct: 1318 DIFTKPLKKEVFMKLRSLLGVQ 1339


>gb|KYP44533.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1342

 Score =  906 bits (2341), Expect = 0.0
 Identities = 483/1118 (43%), Positives = 682/1118 (61%), Gaps = 28/1118 (2%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAV 1368
            VP+    NYD W ++M  L  + DV++ V+    EP + E L++ Q    +  R R+   
Sbjct: 10   VPMLTKSNYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKA 69

Query: 1369 LSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENE 1548
            L +I +G+    F KI  +K AKEAWE LK  ++G  +V+ ++LQTLR ++E   MKE E
Sbjct: 70   LCLIYQGLDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGE 129

Query: 1549 SLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQE 1728
             ++DY SR+  + N +K  G++++D RI+EKIL S+  KF+ I+ + E TKDL+ + I++
Sbjct: 130  LVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQ 189

Query: 1729 LLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ 1908
            LL SL++YE++  +  ++ +E  F++ +   K+   ++                     +
Sbjct: 190  LLGSLQAYEEKKKK-KEEIVEQVFKAHVDSRKEENAHNQSRRSYSQEQGRGRAYGHGQGR 248

Query: 1909 --SYGSFRGQSSFDKRSFGDGNSH------KCSICKKDNHEXXXXXXXXXXXXXXXXQFG 2064
              +  + RG+SS   R  G+ NS       KC  C K                     FG
Sbjct: 249  RPNNNNQRGESSNRGRGRGNPNSRYDKSRIKCYNCNK---------------------FG 287

Query: 2065 HLEKFCRKKN----QQQANFLEEK-QENENVFFCHSANVERSDT-WFLDSGCSNHMTGDE 2226
            H    CR  N    +++AN+ EE+ QE+  +   +    +  D  W+LDSG SNHM G  
Sbjct: 288  HYASECRAPNKNKVEEKANYAEERCQEDGTLLLAYKGQDKGEDNQWYLDSGASNHMCGKR 347

Query: 2227 SILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSVGQ 2403
            S+ V++  +    V  G+ + V V+GKG + ++ + G  ++I++V  VP +  N+LS+GQ
Sbjct: 348  SMFVELDESVKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQ 407

Query: 2404 LVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALL 2583
            L+E GY +  +    SI  +      + K+ M RNR F +  + +    LK    D++ L
Sbjct: 408  LLEKGYDIQLKNNNLSI--RDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWL 465

Query: 2584 WHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEIL 2763
            WH R GHLNF+ L LL +K MV GLP I     VCEGC LGK  R  FPK    RA++ L
Sbjct: 466  WHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPL 525

Query: 2764 ELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTG 2943
            EL+HTD+CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF  FKKFK  VEK++G
Sbjct: 526  ELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESG 585

Query: 2944 SFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMH 3123
              IK LRSD+G E+ SKEF K+CED G+ RQLT   +PQQNGV ERKN+T++EMA+SM+ 
Sbjct: 586  LLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 645

Query: 3124 EKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPK 3303
             K LPK FWAEAV  AVYL NRSPT+++  KTP EAW+GRKP + HL+VFG + +  +P 
Sbjct: 646  SKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPD 705

Query: 3304 QKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPS 3483
            +KR KLD+ SEK IF+GY + SK Y+LY+  ++  I+SR+V+FD           ++   
Sbjct: 706  EKRSKLDDKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTF 765

Query: 3484 FPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXR--KFRSLTEIYNAN------- 3636
            FP  +  D    +  +  P+                  R  +FRSL EIY A        
Sbjct: 766  FPCVEEDDVEQQQQPQETPTTPPTSPNTTLQDYESSSERMPRFRSLQEIYEATENLDNVT 825

Query: 3637 ----FCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVK 3804
                F                W+ AM++EI  I+KN+TWEL   P +   IGVKWVYK K
Sbjct: 826  LFCLFADCEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAK 885

Query: 3805 YNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVK 3984
             ++ G VQR KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q  W ++Q+DVK
Sbjct: 886  KDSKGEVQRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVK 945

Query: 3985 SAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFD 4164
            SAFLNG L+EEVY+ QPQG+EV+G+E+KV +LKKALYGLKQAPRAW  +ID YFKE  F 
Sbjct: 946  SAFLNGVLEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQAPRAWNVRIDKYFKEVNFI 1005

Query: 4165 QSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFL 4344
            +   E  LY+K+QG++ILIV LYVDDL+FTGNN  M E+FK +M +++EM+D+GL+ ++L
Sbjct: 1006 KCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYL 1065

Query: 4345 GMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            G+E+ Q ++G+FI QE Y + +LK F + +  P  TP+
Sbjct: 1066 GIEVKQGNEGIFITQESYAKDLLKKFKLDDANPVGTPM 1103



 Score =  190 bits (482), Expect = 7e-45
 Identities = 91/202 (45%), Positives = 126/202 (62%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M  P+  H+   KRILRY++GT  FG+ +  + +  L G+ DSDW G
Sbjct: 1138 PDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSG 1197

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSG++F +G   F W SKKQ                     AIWLR + +++ 
Sbjct: 1198 DMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1257

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT I+ D+ SAIA+AKNPV H R+KHI  ++H+IRE I + +VQ+E+  T+DQ+A
Sbjct: 1258 LPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVA 1317

Query: 541  DIFTKALPREKFQDLRRKLGVQ 606
            DIFTK L +E F  LR  LGVQ
Sbjct: 1318 DIFTKPLKKEVFMKLRSLLGVQ 1339


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  905 bits (2340), Expect = 0.0
 Identities = 484/1129 (42%), Positives = 687/1129 (60%), Gaps = 39/1129 (3%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAV 1368
            VP+    NYD W ++M+ +  + DV++ V+  F EP +   L++ Q    +  R R+   
Sbjct: 10   VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKA 69

Query: 1369 LSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENE 1548
            L +I +G+    F K++    AKEAWE L+  ++G  +V+ ++LQTLR ++E  +MKE E
Sbjct: 70   LCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGE 129

Query: 1549 SLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQE 1728
             ++DY SR+  + N +K  G++++D RI+EK+L S+  KF+ I+ VIE TKDL+ + I++
Sbjct: 130  LVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQ 189

Query: 1729 LLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ 1908
            LL SL++YE++  +  D  IE      +  ++                           +
Sbjct: 190  LLGSLQAYEEKKKKKED-IIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 1909 SY---------GSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQF 2061
             +          S RG+     +S  D +S KC  C K                     F
Sbjct: 249  PHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGK---------------------F 287

Query: 2062 GHLEKFCR----KKNQQQANFLEEKQENENVFFCHSANV---ERSDTWFLDSGCSNHMTG 2220
            GH    C+    KK +++AN++EEK + E++    S      E +  W+LDSG SNHM G
Sbjct: 288  GHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCG 347

Query: 2221 DESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSV 2397
             +S+  ++  +    V LG+ + ++VKGKG I ++ + G  ++I++V  +P +  N+LS+
Sbjct: 348  RKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSL 407

Query: 2398 GQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEA 2577
            GQL+E GY +  +    SI ++  N  L+ K+ M +NR F +  R +    LK    +E+
Sbjct: 408  GQLLEKGYDIRLKDNNLSIRDQESN--LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465

Query: 2578 LLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKE 2757
             LWH R GHLNF  L LL +K MV GLP I+    VCEGC LGK  +  FPK  + RA++
Sbjct: 466  WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 2758 ILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQ 2937
             LEL+HTD+CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF IFKKFK  VEK+
Sbjct: 526  SLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 2938 TGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSM 3117
            +G  IK +RSD+G E+ SKEF K+CED G+ RQLT   +PQQNGV ERKN+T++EMA+SM
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSM 645

Query: 3118 MHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQI 3297
            +  K LPK  WAEAV  AVYLLNRSPTK++  KTP EAW+GRK  V HL+VFG + ++ +
Sbjct: 646  LKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHV 705

Query: 3298 PKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG 3477
            P +KR KLD+ SEK IF+GY + SK Y+LY+  TK  I+SR+++FD           ++ 
Sbjct: 706  PDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 765

Query: 3478 PSFPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXR-----------KFRSLTEI 3624
              FP        H E DE +P+ +E                           +FRS+ E+
Sbjct: 766  NFFP--------HFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL 817

Query: 3625 YNAN-----------FCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKD 3771
            Y              F                W+ AM++EI  I+KN+TWELT  P    
Sbjct: 818  YEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877

Query: 3772 VIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQ 3951
             IGVKWVYK K N+ G V+R KARLVAKGY Q+ GIDYDE FAPVAR++TVR IISLA Q
Sbjct: 878  TIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQ 937

Query: 3952 KGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQ 4131
              W ++Q+DVKSAFLNG+L+EEVY+ QPQG+ V+G+E+KV +LKKALYGLKQAPRAW ++
Sbjct: 938  NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTR 997

Query: 4132 IDGYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYE 4311
            ID YFKEK F +   E  LY+K Q E+ILI  LYVDDL+FTGNN  M E+FK EM +++E
Sbjct: 998  IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 1057

Query: 4312 MSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            M+D+GL++++LG+E+ Q+D+G+FI QE Y +++LK F M +  P  TP+
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPM 1106



 Score =  193 bits (490), Expect = 8e-46
 Identities = 93/208 (44%), Positives = 128/208 (61%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M +P+  H    KRILRY++GT +FG+ +   ++  L G+ DSDWGG
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSG++F +G   F W SKKQ                     AIWLR + +++ 
Sbjct: 1201 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELS 1260

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT IF D+ SAIA+AKNPV H R+KHI  ++H+IRE +   +VQLE+  T+DQ+A
Sbjct: 1261 LPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVA 1320

Query: 541  DIFTKALPREKFQDLRRKLGVQPKHITG 624
            DIFTK L RE F  +R  LGV    + G
Sbjct: 1321 DIFTKPLKREDFIKMRSLLGVAKSSLRG 1348


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  902 bits (2331), Expect = 0.0
 Identities = 481/1124 (42%), Positives = 683/1124 (60%), Gaps = 39/1124 (3%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAV 1368
            VP+    NYD W ++M+ +  + DV++ V+  F EP +   L++ Q    +  R R+   
Sbjct: 10   VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKA 69

Query: 1369 LSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENE 1548
            L +I +G+    F K++    AKEAWE L+  ++G  +V+ ++LQTLR ++E  +MKE E
Sbjct: 70   LCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGE 129

Query: 1549 SLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQE 1728
             ++DY SR+  + N +K  G++++D RI+EK+L S+  KF+ I+ VIE TKDL+ + I++
Sbjct: 130  LVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQ 189

Query: 1729 LLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ 1908
            LL SL++YE++  +  D  +E      +  ++                           +
Sbjct: 190  LLGSLQAYEEKKKKKED-IVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 1909 SY---------GSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQF 2061
             +          S RG+     +S  D +S KC  C K                     F
Sbjct: 249  PHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGK---------------------F 287

Query: 2062 GHLEKFCR----KKNQQQANFLEEKQENENVFFCHSANV---ERSDTWFLDSGCSNHMTG 2220
            GH    C+    KK +++AN++EEK + E++    S      E +  W+LDSG SNHM G
Sbjct: 288  GHYASECKAPSNKKFKEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCG 347

Query: 2221 DESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSV 2397
             +S+  ++  +    V LG+ + ++VKGKG I ++ + G  ++I++V  +P +  N+LS+
Sbjct: 348  RKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSL 407

Query: 2398 GQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEA 2577
            GQL+E GY +  +    SI +K  N  L+ K+ M +NR F +  R +    LK    +E+
Sbjct: 408  GQLLEKGYDIRLKDNNLSIRDKESN--LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465

Query: 2578 LLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKE 2757
             LWH R GHLNF  L LL +K MV GLP I+    VCEGC LG   +  FPK  + RA++
Sbjct: 466  WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQK 525

Query: 2758 ILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQ 2937
             LEL+HTD+CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF IFKKFK  VEK+
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 2938 TGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSM 3117
            +G  IK +RSD G E+ SKEF K+CED G+ RQLT   +PQQNGV ERKN+T++EMA+SM
Sbjct: 586  SGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSM 645

Query: 3118 MHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQI 3297
            +  K LPK  WAEAV  AVYLLNRSPTK++  KTP EAW+GRKP V HL+VFG + ++ +
Sbjct: 646  LKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 705

Query: 3298 PKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG 3477
            P +KR KLD+ SEK IF+GY + SK Y+LY+  TK  I+SR+++FD           ++ 
Sbjct: 706  PDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 765

Query: 3478 PSFPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXR-----------KFRSLTEI 3624
              FP        H E D+ +P+ +E                           +FRS+ E+
Sbjct: 766  NFFP--------HFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL 817

Query: 3625 YNAN-----------FCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKD 3771
            Y              F                W+ AM++EI  I+KN+TWELT  P    
Sbjct: 818  YEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877

Query: 3772 VIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQ 3951
             IGVKWVYK K N+ G V+R KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q
Sbjct: 878  AIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQ 937

Query: 3952 KGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQ 4131
              W ++Q+DVKSAFLNG+L+EEVY+ QPQG+ V+G+E+KV +LKK LYGLKQAPRAW ++
Sbjct: 938  NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTR 997

Query: 4132 IDGYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYE 4311
            ID YFKEK F +   E  LY+K Q E+ILI  LYVDDL+FTGNN  M E+FK EM +++E
Sbjct: 998  IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 1057

Query: 4312 MSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKP 4443
            M+D+GL++++LG+E+ Q+D+G+FI QE Y +++LK F M +  P
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNP 1101



 Score =  127 bits (319), Expect = 1e-25
 Identities = 73/208 (35%), Positives = 104/208 (50%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M +P+  H    KRILRY++GT +FG+ +   ++  L          
Sbjct: 1115 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKL---------- 1164

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
                              V C                           AIWLR + +++ 
Sbjct: 1165 ------------------VVC--------------------------HAIWLRNLLKELS 1180

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT IF D+ SAIA+AKNPV H R+KHI  ++H+IRE +   +VQLE+  T+DQ+A
Sbjct: 1181 LPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVA 1240

Query: 541  DIFTKALPREKFQDLRRKLGVQPKHITG 624
            DIFTK L RE F  +R  LGV    + G
Sbjct: 1241 DIFTKPLKREDFIKMRSLLGVAKSSLRG 1268


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  903 bits (2334), Expect = 0.0
 Identities = 482/1129 (42%), Positives = 689/1129 (61%), Gaps = 39/1129 (3%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAV 1368
            VP+    NYD W ++M+ +  + DV++ V+  F EP +   L++ Q    +  R R+   
Sbjct: 10   VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKA 69

Query: 1369 LSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENE 1548
            L +I +G+    F K++    AKEAWE L+  ++G  +V+ ++LQTLR ++E  +MKE E
Sbjct: 70   LCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGE 129

Query: 1549 SLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQE 1728
             ++DY SR+  + N +K  G++++D RI+EK+L S+  KF+ I+ VIE TKDL+ + I++
Sbjct: 130  LVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQ 189

Query: 1729 LLSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ 1908
            LL SL++YE++  +  D A E      +  ++                           +
Sbjct: 190  LLGSLQAYEEKKKKKEDIA-EQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 1909 SY---------GSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQF 2061
             +          S RG+     +S  D +S KC  C K                     F
Sbjct: 249  PHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGK---------------------F 287

Query: 2062 GHLEKFCR----KKNQQQANFLEEKQENENVFFCHSANVER---SDTWFLDSGCSNHMTG 2220
            GH    C+    KK +++A+++EEK + E++    S   +    +  W+LDSG SNHM G
Sbjct: 288  GHYASECKAPSNKKFEEKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCG 347

Query: 2221 DESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSV 2397
             +S+  ++  +    V LG+ + ++VKGKG I ++ + G  ++I++V  +P +  N+LS+
Sbjct: 348  RKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSL 407

Query: 2398 GQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEA 2577
            GQL+E GY +  +    SI ++  N  L+ K+ M +NR F +  R +    LK    +E+
Sbjct: 408  GQLLEKGYDIRLKDNNLSIRDQESN--LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES 465

Query: 2578 LLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKE 2757
             LWH R GHLNF  L LL +K MV GLP I+    VCEGC LGK  +  FPK  + RA++
Sbjct: 466  WLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQK 525

Query: 2758 ILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQ 2937
             LEL+HTD+CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF IFKKFK  VEK+
Sbjct: 526  PLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKE 585

Query: 2938 TGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSM 3117
            +G  IK +RSD+G E+ SKEF K+CED G+ RQLT   +PQQNGVVERKN+T++EMA+SM
Sbjct: 586  SGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSM 645

Query: 3118 MHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQI 3297
            +  K LPK  WAEAV  AVYLLNRSPTK++  KTP EAW+GRKP V HL+VFG + ++ +
Sbjct: 646  LKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 705

Query: 3298 PKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG 3477
            P +KR KLD+ SEK IF+GY + SK Y+LY+  TK  I+SR+++FD           ++ 
Sbjct: 706  PDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 765

Query: 3478 PSFPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXR-----------KFRSLTEI 3624
              FP        H E DE +P+ +E                           +FRS+ E+
Sbjct: 766  NFFP--------HFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQEL 817

Query: 3625 YNAN-----------FCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKD 3771
            Y              F                W+ AM++EI  I+KN+TWELT  P    
Sbjct: 818  YEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877

Query: 3772 VIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQ 3951
             IGVKWVYK K N+ G V+R KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q
Sbjct: 878  AIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQ 937

Query: 3952 KGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQ 4131
              W ++Q+DVKSAFLNG+L+EEVY+ QPQG+ V+G+E+KV +LKK LYGLKQAPRAW ++
Sbjct: 938  NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTR 997

Query: 4132 IDGYFKEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYE 4311
            ID YFKEK F +   E  LY+K Q E+ILI  LYVDDL+FTGNN  + E+FK EM +++E
Sbjct: 998  IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFE 1057

Query: 4312 MSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            M+D+GL++++LG+E+ Q+D+G+FI QE Y +++LK F + +  P  TP+
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPM 1106



 Score =  192 bits (487), Expect = 2e-45
 Identities = 92/208 (44%), Positives = 127/208 (61%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M +P+  H    KRILRY++GT +FG+ +   ++  L G+ DSDWGG
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSG++F +G   F W SKKQ                     AIWLR + +++ 
Sbjct: 1201 DVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1260

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT IF D+ SAIA+AKNPV H R+KHI  ++H+IRE +   +VQLE+  T+DQ+A
Sbjct: 1261 LPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVA 1320

Query: 541  DIFTKALPREKFQDLRRKLGVQPKHITG 624
            D FTK L RE F  +R  LGV    + G
Sbjct: 1321 DFFTKPLKRENFIKMRSLLGVAKSSLRG 1348


>gb|KYP66220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1331

 Score =  902 bits (2331), Expect = 0.0
 Identities = 480/1111 (43%), Positives = 680/1111 (61%), Gaps = 28/1111 (2%)
 Frame = +1

Query: 1210 NYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLSMIQRG 1389
            NYD W ++M  L  + DV++ V+    EP + E L++ Q    +  R R+   L +I +G
Sbjct: 6    NYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQG 65

Query: 1390 VTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESLNDYSS 1569
            +    F KI  +K AKEAWE LK  ++G  +V+ ++LQTLR ++E   MKE E ++DY S
Sbjct: 66   LDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVSDYFS 125

Query: 1570 RLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELLSSLKS 1749
            R+  + N +K  G++++D RI+EKIL S+  KF+ I+ + E TKDL+ + I++LL SL++
Sbjct: 126  RVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLGSLQA 185

Query: 1750 YEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQ--SYGSF 1923
            YE++  +  ++ +E  F++ +   K+   ++                     +  +  + 
Sbjct: 186  YEEKKKK-KEEIVEQVFKAHVDSRKEENAHNQSRRSYSQEQGRGRAYGHGQGRRPNNNNQ 244

Query: 1924 RGQSSFDKRSFGDGNSH------KCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLEKFCR 2085
            RG+SS   R  G+ NS       KC  C K                     FGH    CR
Sbjct: 245  RGESSNRGRGRGNPNSRYDKSRIKCYNCNK---------------------FGHYASECR 283

Query: 2086 KKN----QQQANFLEEK-QENENVFFCHSANVERSDT-WFLDSGCSNHMTGDESILVDIG 2247
              N    +++AN+ EE+ QE+  +   +    +  D  W+LDSG SNHM G  S+ V++ 
Sbjct: 284  APNKNKVEEKANYAEERCQEDGTLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELD 343

Query: 2248 TAGNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSVGQLVEHGYI 2424
             +    V  G+ + V V+GKG + ++ + G  ++I+++  VP +  N+LS+GQL+E GY 
Sbjct: 344  ESVKGNVAFGDESKVAVEGKGNVLIQLKNGEHQFISNIYYVPSMKSNILSLGQLLEKGYD 403

Query: 2425 VVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGH 2604
            +  +    SI  +      + K+ M RNR F +  + +    LK    D++ LWH R GH
Sbjct: 404  IQLKNNNLSI--RDNTSRFITKVPMMRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGH 461

Query: 2605 LNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDL 2784
            LNF+ L+LL +K MV GLP I     VCEGC LGK  R  FPK    RA++ LEL+HTD+
Sbjct: 462  LNFKGLDLLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDV 521

Query: 2785 CGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILR 2964
            CGP++  S G + YF+LFIDDFSR TWVYF+KEKS+VF  FKKFK  VEK++G  IK LR
Sbjct: 522  CGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALR 581

Query: 2965 SDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKS 3144
            SD+G E+ SKEF K+CED G+ RQLT   +PQQNGV ERKN+T++EMA+SM+  K LPK 
Sbjct: 582  SDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKE 641

Query: 3145 FWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLD 3324
            FWAEAV  AVYL NRSPT+++  KTP EAW+GRKP + HL+VFG + +  +P +KR KLD
Sbjct: 642  FWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLD 701

Query: 3325 ETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPSFPTNKMQ 3504
            + SEK IF+GY + SK Y+LY+  ++  I+SR+V+FD           ++   FP  +  
Sbjct: 702  DKSEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEED 761

Query: 3505 DEAHVESDENQPSHDEVXXXXXXXXXXXXXXR--KFRSLTEIYNAN-----------FCH 3645
            D    +  +  P+                  R  +FRSL EIY A            F  
Sbjct: 762  DVEQQQQPQETPTTPPTSPNTTLQDYESSSERMPRFRSLQEIYEATENLDNVTLFCLFAD 821

Query: 3646 VXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSV 3825
                          W+ AM++EI  I+KN+TWEL   P +   IGVKWVYK K ++ G V
Sbjct: 822  CEPMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEV 881

Query: 3826 QRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGE 4005
            QR KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q  W ++Q+DVKSAFLNG 
Sbjct: 882  QRYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSAFLNGV 941

Query: 4006 LKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPT 4185
            L+EEVY+ QPQG+EV+G+E+KV +LKKALYGLKQAPRAW  +ID YFKE  F +   E  
Sbjct: 942  LEEEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQAPRAWNVRIDKYFKEANFIKCPYEHA 1001

Query: 4186 LYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQD 4365
            LY+K+QG++ILIV LYVDDL+FTGNN  M E+FK +M +++EM+D+GL+ ++LG+E+ Q 
Sbjct: 1002 LYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEVKQG 1061

Query: 4366 DDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            ++G+FI QE Y + +LK F + +  P  TP+
Sbjct: 1062 NEGIFITQESYAKDLLKKFKLDDANPVGTPM 1092



 Score =  188 bits (478), Expect = 2e-44
 Identities = 90/202 (44%), Positives = 125/202 (61%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI++A  ++SR+M  P+  H+   KRILRY++GT  FG+ +  + +  L G+ DSDW G
Sbjct: 1127 PDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSG 1186

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSG++F +G   F W SKKQ                     AIWLR + +++ 
Sbjct: 1187 DMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELS 1246

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              Q  PT I+ D+ S IA+AKNPV H R+KHI  ++H+IRE I + +VQ+E+  T+DQ+A
Sbjct: 1247 LPQVEPTKIYVDNKSTIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVA 1306

Query: 541  DIFTKALPREKFQDLRRKLGVQ 606
            DIFTK L +E F  LR  LGVQ
Sbjct: 1307 DIFTKPLKKEVFMKLRSLLGVQ 1328


>dbj|GAU33542.1| hypothetical protein TSUD_143350 [Trifolium subterraneum]
          Length = 1164

 Score =  890 bits (2301), Expect = 0.0
 Identities = 483/1115 (43%), Positives = 678/1115 (60%), Gaps = 21/1115 (1%)
 Frame = +1

Query: 1192 PIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVL 1371
            P+F GENY  W  KM+T   +  ++D V+N    P      T  Q+K+  ++ ++    L
Sbjct: 12   PMFVGENYHLWAAKMKTYLRAQSLWDVVENGSNPPPLPNNPTIAQIKNHNEEVAKEGRAL 71

Query: 1372 SMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENES 1551
            ++I   +   IF KI+ L+ AKEAW  LK+EFQG  + + +++  LRR++E  KMKE E+
Sbjct: 72   AIIHAALHDDIFIKILNLETAKEAWNKLKEEFQGSERTKKMQVLNLRREFEALKMKETEA 131

Query: 1552 LNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQEL 1731
            + ++S R++ +++Q+   G+E+ DQR+VEK L+ +P +F+  I+ +E  KD   + + EL
Sbjct: 132  VREFSDRISKVVSQITLLGEELSDQRVVEKNLVCLPGRFEAKISSLEENKDFSQITLAEL 191

Query: 1732 LSSLKSYEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQS 1911
            +++L++ EQR +   ++ +E AF +         +NH                      S
Sbjct: 192  VNALQATEQRKSLKLEENVEGAFVAK-------GKNH----------------------S 222

Query: 1912 YGSFRGQSSFDKRSFGDGNSHKCSI-------------CKKDNHEXXXXXXXXXXXXXXX 2052
            Y SF G++ F ++  G G   + +              CKKD H                
Sbjct: 223  YNSF-GKNPFGEKK-GKGKKEEVNNKGESWKNFPTRQHCKKDTHLEKYCWYRPDVKCRAC 280

Query: 2053 XQFGHLEKFCRKKNQQQ---ANFLEEKQENENVFF--CHSANVERSDTWFLDSGCSNHMT 2217
             Q GH+EK C+ K  QQ   A  +E   + E +F   C+S N  + +TW +DSGC NHMT
Sbjct: 281  NQLGHVEKVCKNKANQQRQRAQVVEHHPQEEQLFMASCYSTNSSK-ETWLIDSGCINHMT 339

Query: 2218 GDESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNLLSV 2397
             +  I  ++  +  S+V +GNG  V VKGKG ++++T  GIKYI DVL VP++ Q+LLSV
Sbjct: 340  HNVGIFKELDKSFYSKVTIGNGEHVDVKGKGVVAIETPSGIKYIADVLFVPEINQSLLSV 399

Query: 2398 GQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMG-RNRSFPITFRYEEHSALKATTTDE 2574
            GQ++E  Y + F+ + C+I +   +K +    T+G R +SFPI ++     A  +   D+
Sbjct: 400  GQMMEKNYTLHFKDKRCTILDPSGSKLM----TVGMRGKSFPIEWKQTTMHAFPSNV-DD 454

Query: 2575 ALLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAK 2754
            + LWH+RLGH ++ +L  +   ++V  LP I ++  +C+ C  GK  R PFP    WRA 
Sbjct: 455  SSLWHRRLGHFSYSTLKQMSSHDLVENLPIIDDVVDMCDVCQFGKQSRLPFPVESTWRAS 514

Query: 2755 EILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEK 2934
            E L+L+HTD+CGPM   S   N YF+LFIDDF+RM WV+F++++S VF  F+ FK  VEK
Sbjct: 515  EKLQLIHTDVCGPMPTTSLNGNKYFLLFIDDFTRMCWVFFLRQESDVFPAFQSFKLMVEK 574

Query: 2935 QTGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKS 3114
            +    IK LRSD G EY + EF  FCE  G+  Q T  YTPQQNGV ERKN+TV+EMA+ 
Sbjct: 575  EVDCQIKKLRSDNGNEYTAGEFKVFCEQVGIQHQFTVPYTPQQNGVSERKNRTVMEMARC 634

Query: 3115 MMHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQ 3294
            ++ EKG+PK+FWAEAV T+VYLLN  PTK L  KTP EAW  RKPSV HL++FGCVCY  
Sbjct: 635  LLFEKGIPKTFWAEAVNTSVYLLNLLPTKVLKGKTPFEAWYERKPSVEHLRIFGCVCYLH 694

Query: 3295 IPKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKE 3474
            +P  KR KL+  S   IF+GYSS SK YR+Y+L+TK ++VSRDV FD            E
Sbjct: 695  VPNVKRDKLETKSVVGIFLGYSSNSKGYRIYNLETKKILVSRDVQFDEFSKWNWEKSQTE 754

Query: 3475 GPSFPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIY-NANFCHVX 3651
            G S     M  E   +S E+Q S DE               R  R+L +IY   N   + 
Sbjct: 755  GSS---KVMSTE---DSLEDQNSEDE------GENYDNFPTRGTRTLDDIYARCNIATLE 802

Query: 3652 XXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSVQR 3831
                        WK AM++E+ +IEKN TW+L D+P ++ +IGVKWVY+ K N DGS+ +
Sbjct: 803  PTRYAEAANVEGWKVAMQEEMKMIEKNQTWQLVDKPENQKIIGVKWVYRTKLNPDGSINK 862

Query: 3832 NKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGELK 4011
             KARLV KGY QQ G+D+ +TFAPVAR DT+R +++LA + GW +Y    K AFLNG L 
Sbjct: 863  LKARLVVKGYFQQHGVDFSDTFAPVARHDTIRLLVALAAKLGWKIYHF--KLAFLNGLLD 920

Query: 4012 EEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPTLY 4191
            E++YV+QP+GF+V G E KVYKL KALYGLKQAPRAWYS+IDGY  + GF +S++E TLY
Sbjct: 921  EDIYVDQPEGFKVAGSENKVYKLHKALYGLKQAPRAWYSRIDGYLLQNGFKRSENEATLY 980

Query: 4192 VK-SQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQDD 4368
            VK S+ E  LIV+LYVDDL+  GN    +  FK  M  ++EM+DLG + +FLGMEI+Q  
Sbjct: 981  VKWSRNEVKLIVSLYVDDLLVIGNESNSLSQFKQAMENEFEMTDLGEMKYFLGMEIFQSS 1040

Query: 4369 DGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
             G+FI Q+KY  ++LK F M +CK   TPLVVNEK
Sbjct: 1041 AGIFISQKKYALEVLKKFHMDKCKSVSTPLVVNEK 1075



 Score = 80.9 bits (198), Expect = 2e-11
 Identities = 35/53 (66%), Positives = 45/53 (84%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGF 159
            PDIMFAASLLSRFMH+PSQ+H+G  KR+LRY++GT D+G+ F KN N +L G+
Sbjct: 1105 PDIMFAASLLSRFMHSPSQVHLGAAKRVLRYIKGTTDYGLCFLKNENEDLQGY 1157


>gb|KYP66219.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1033

 Score =  876 bits (2263), Expect = 0.0
 Identities = 474/1104 (42%), Positives = 657/1104 (59%), Gaps = 26/1104 (2%)
 Frame = +1

Query: 1210 NYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLSMIQRG 1389
            NYD W ++M  L  + DV++ V+    EP + E L++ Q    +  R R+   L +I +G
Sbjct: 6    NYDNWSLRMVALLGAHDVWEVVEKGHTEPENVESLSQAQKDSLRDSRKRDKKALCLIYQG 65

Query: 1390 VTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESLNDYSS 1569
            +    F KI  +K AKEAWE LK  ++G  +V+ ++LQTLR ++E   MKE E ++DY S
Sbjct: 66   LDEDTFEKISGVKTAKEAWEKLKISYKGADQVKKVRLQTLRGEFEALHMKEGELVSDYFS 125

Query: 1570 RLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELLSSLKS 1749
            R+  + N +K  G++++D RI+EKIL S+  KF+ I+ + E TKDL+ + I++LL     
Sbjct: 126  RVLTVTNNLKRNGEKLDDVRIMEKILRSLDPKFEHIVTITEETKDLEAMSIEQLLG---- 181

Query: 1750 YEQRMTRHSDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQSYGSFRG 1929
                                    ++P  N+                           RG
Sbjct: 182  ------------------------RRPNNNNQ--------------------------RG 191

Query: 1930 QSSFDKRSFGDGNSH------KCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLEKFCRKK 2091
            +SS   R  G+ NS       KC  C K                     FGH    CR  
Sbjct: 192  ESSNRGRGRGNPNSRYDKSRIKCYNCNK---------------------FGHYASECRAP 230

Query: 2092 N----QQQANFLEEK-QENENVFFCHSANVERSDT-WFLDSGCSNHMTGDESILVDIGTA 2253
            N    +++AN+ EE+ QE+  +   +    +  D  W+LDSG SNHM G  S+ V++  +
Sbjct: 231  NKNKVEEKANYAEERCQEDGTLLLAYKGQDKGEDNQWYLDSGASNHMCGKRSMFVELDES 290

Query: 2254 GNSQVKLGNGAIVQVKGKGKISVKTEIGI-KYINDVLLVPDLTQNLLSVGQLVEHGYIVV 2430
                V  G+ + V V+GKG + ++ + G  ++I++V  VP +  N+LS+GQL+E GY + 
Sbjct: 291  VKGNVAFGDESKVAVEGKGNVLIRLKNGEHQFISNVYYVPSMKSNILSLGQLLEKGYDIQ 350

Query: 2431 FEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHLN 2610
             +    SI  +      + K+ M RNR F +  + +    LK    D++ LWH R GHLN
Sbjct: 351  LKNNNLSI--RDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLN 408

Query: 2611 FQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCG 2790
            F+ L LL +K MV GLP I     VCEGC LGK  R  FPK    RA++ LEL+HTD+CG
Sbjct: 409  FKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCG 468

Query: 2791 PMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSD 2970
            P++  S G + YF+LFIDDFSR TWVYF+KEKS+VF  FKKFK  VEK++G  IK LRSD
Sbjct: 469  PIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSD 528

Query: 2971 QGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFW 3150
            +G E+ SKEF K+CED G+ RQLT   +PQQNGV ERKN+T++EMA+SM+  K LPK FW
Sbjct: 529  RGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFW 588

Query: 3151 AEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDET 3330
            AEAV  AVYL NRSPT+++  KTP EAW+GRKP + HL+VFG + +  +P +KR KLD+ 
Sbjct: 589  AEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDEKRSKLDDK 648

Query: 3331 SEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPSFPTNKMQDE 3510
            SEK IF+GY + SK Y+LY+  ++  I+SR+V+FD           ++   FP  +  D 
Sbjct: 649  SEKYIFIGYDANSKGYKLYNPDSRKTIISRNVVFDEEGEWDWSTNCEDHTFFPCVEEDDV 708

Query: 3511 AHVESDENQPSHDEVXXXXXXXXXXXXXXR--KFRSLTEIYNAN-----------FCHVX 3651
               +  +  P+                  R  +FRSL EIY A            F    
Sbjct: 709  EQQQQPQETPTTPPTSPNTTLQDYESSSERMPRFRSLQEIYEATENLDNVTLFCLFADCE 768

Query: 3652 XXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSVQR 3831
                        W+ AM++EI  I+KN+TWEL   P +   IGVKWVYK K ++ G VQR
Sbjct: 769  PMNFQEAIGKKSWRNAMDEEIEAIKKNDTWELVSLPKEHTAIGVKWVYKAKKDSKGEVQR 828

Query: 3832 NKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGELK 4011
             KARLVAKGYSQ+ GIDYDE FAPVAR++TVR IISLA Q  W ++Q+DVKSAFLNG L+
Sbjct: 829  YKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNNWKIHQMDVKSAFLNGVLE 888

Query: 4012 EEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPTLY 4191
            EEVY+ QPQG+EV+G+E+KV +LKKALYGLKQAPRAW  +ID YFKE  F +   E  LY
Sbjct: 889  EEVYIEQPQGYEVKGEEDKVLRLKKALYGLKQAPRAWNVRIDKYFKEANFIKCPYEHALY 948

Query: 4192 VKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQDDD 4371
            +K+QG++ILIV LYVDDL+FTGNN  M E+FK +M +++EM+D+GL+ ++LG+E+ Q ++
Sbjct: 949  IKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEVKQGNE 1008

Query: 4372 GVFICQEKYVEKILKIFDMSECKP 4443
            G+FI QE Y + +LK F + +  P
Sbjct: 1009 GIFITQESYAKDLLKKFKLDDANP 1032


>gb|KYP43625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1262

 Score =  879 bits (2271), Expect = 0.0
 Identities = 477/1097 (43%), Positives = 666/1097 (60%), Gaps = 17/1097 (1%)
 Frame = +1

Query: 1234 METLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLSMIQRGVTPSIFPK 1413
            M     + D+++ V+   E P   E  T  QMK   ++ ++ A  L+++   V   IF +
Sbjct: 1    MRAQLRAYDLWEVVETGVEPPPLPENSTVAQMKFHSEQVAKRAKTLTILHSAVDDDIFMR 60

Query: 1414 IMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESLNDYSSRLTDLINQ 1593
            I  L  AKE WE L++EF G+ + + +++  L+R++E  KM E E++ D+ ++L  ++NQ
Sbjct: 61   ISNLDTAKEVWEKLQEEFFGNERTKQMQVLNLKREFEALKMNEVENIKDFMTKLMKVVNQ 120

Query: 1594 MKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELLSSLKSYEQRMTRH 1773
            ++  G+++ D RIVEK+L+ +PE+F+  I+ +E +KDL  + + EL+++L++ EQR    
Sbjct: 121  IRLLGEKLPDSRIVEKVLVVLPERFESKISSLEESKDLSKISLTELVNALQAQEQRRLLR 180

Query: 1774 SDKAIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQSYGSFRGQSSFDKRS 1953
             ++AIESA     +G K P                         +  G   G+ S  + +
Sbjct: 181  QEEAIESALHVRHKG-KGPAMK---------------------GKFVGEHYGKDSKKRET 218

Query: 1954 FGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLEKFCRKKNQQQ---------A 2106
            F          C K                     +GH+E+FCR K QQQ         A
Sbjct: 219  FP-------KFCNK---------------------YGHIERFCRLKQQQQNQQNQSPQKA 250

Query: 2107 NFLEEKQENENVFFCHSAN-VERSDTWFLDSGCSNHMTGDESILVDIGTAGNSQVKLGNG 2283
            N  E + + + +F   +   +E  +TWF+DSGC+ HMT      +++  AG  +VK+GNG
Sbjct: 251  NVTEIEGDEDLLFMAKTTKCLEDENTWFIDSGCTQHMTSKPEFFLELKPAGG-RVKIGNG 309

Query: 2284 AIVQVKGKGKISVKTEIGIKYINDVLLVPDLTQNLLSVGQLVEHGYIVVFEGEGCSIYNK 2463
              + + GKG + + T  GIK+I+DVLLVP+L QNLLSVGQ+++ GY ++F+ EG  I   
Sbjct: 310  DRLAITGKGIVGIHTATGIKHISDVLLVPELDQNLLSVGQMMQSGYCLLFK-EGSCIVTD 368

Query: 2464 GRNKELMQKITMGRNRSFPITFRY-EEHSALKATTTDEALLWHKRLGHLNFQSLNLLHQK 2640
                EL + I M R RSFP+ +    EH    +    ++ LWHKR GH N +S+    ++
Sbjct: 369  VDGHELFE-IEM-RKRSFPVNWNLISEHECKISKIELDSKLWHKRFGHYNLKSIQFAQKQ 426

Query: 2641 NMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCGPMRNPSHGNN 2820
             +V  LP I     VCE C LGK +R PFP  V WRA E LELVH+D+CGPM+  S   N
Sbjct: 427  ELVKDLPNIQICSEVCESCQLGKQYRLPFPNSVTWRANEKLELVHSDVCGPMKTTSLNGN 486

Query: 2821 LYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSDQGKEYNSKEF 3000
             YFILFIDDF+RMTWVYF+K+KS+VF +FKKFK  VE Q+G  +K LR+D GKEY S EF
Sbjct: 487  KYFILFIDDFTRMTWVYFLKQKSEVFSVFKKFKALVEAQSGFLLKKLRTDNGKEYTSTEF 546

Query: 3001 DKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFWAEAVYTAVYL 3180
            + FC+D G+  QLT  Y+PQQNGV ERKN++V+EMA+ M+ EK LPKSFWAEA+ TAVYL
Sbjct: 547  NIFCDDLGVEHQLTVSYSPQQNGVAERKNRSVLEMARCMIFEKKLPKSFWAEAINTAVYL 606

Query: 3181 LNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDETSEKCIFVGYS 3360
             NR PT+A+   TP+EAW G KPSVRHLKVFG +CY+ +P  KR KLDE +E+ I +GYS
Sbjct: 607  QNRLPTRAIKGMTPVEAWGGIKPSVRHLKVFGSLCYTHVPAVKRSKLDERAERGILIGYS 666

Query: 3361 SKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEG----PSFPTNKMQDEAHVESD 3528
            SKSK Y++Y + +  V VSRD+  D            E     P+F +     E  ++ D
Sbjct: 667  SKSKGYKVYGIDSGKVSVSRDIKVDEDAYWNWETCQMERHLVLPTFESTIEDQEEDIDDD 726

Query: 3529 ENQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIY-NANFCHVXXXXXXXXXXXXXWKKAME 3705
                                   R  R L+EIY   N   +             W +AM+
Sbjct: 727  --------------------FAIRGTRHLSEIYQRCNVVVLEPTNFEEASKVDEWNQAMK 766

Query: 3706 DEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDY 3885
            +E+  IE N TW+L D+P DK+VIGVKWVY+ K N D S+ + KA LV KGY QQPGIDY
Sbjct: 767  EEMTTIEDNKTWQLVDKPKDKNVIGVKWVYRTKLNPDRSINKYKAILVVKGYVQQPGIDY 826

Query: 3886 DETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEE 4065
             ETFAPVARMDT+R +++LA Q  W ++ LDVKSAFLNG L EE+YV QP+GF V+G E+
Sbjct: 827  TETFAPVARMDTIRILLALAAQMKWEIWHLDVKSAFLNGNLVEEIYVAQPEGFVVKGDED 886

Query: 4066 KVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPTLYVKSQGE-NILIVALYVDD 4242
            KVYKL KALYGLKQAPRAWYS+ID YF  +GF +S+++ TLYVK   +   LI++LYVDD
Sbjct: 887  KVYKLHKALYGLKQAPRAWYSRIDSYFCSQGFRRSENDATLYVKKLLDGGSLIISLYVDD 946

Query: 4243 LVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIF 4422
            L+ T NN++ ++    EM  +++MS+LG +N+FLG+E++Q  DG+F+ QEKY  ++LK +
Sbjct: 947  LLVTSNNQQEVQQLMEEMQNQFKMSNLGKMNYFLGLEVHQTKDGIFMNQEKYAHEVLKKY 1006

Query: 4423 DMSECKPKDTPLVVNEK 4473
             M  CK   TPLV N K
Sbjct: 1007 KMESCKFVPTPLVQNLK 1023



 Score =  221 bits (562), Expect = 2e-54
 Identities = 108/205 (52%), Positives = 143/205 (69%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PD+M+AASLLSRFM +PS+IH    KR+LRYL+GT  FGI ++   N +L G+ DSDW G
Sbjct: 1053 PDLMYAASLLSRFMQSPSEIHFAATKRVLRYLKGTTQFGIWYKPRKNGSLIGYVDSDWAG 1112

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DDMKST+GY+FSLGSG+F W SKKQ+                  +QAIWLR+I  D+G
Sbjct: 1113 NIDDMKSTTGYVFSLGSGMFSWNSKKQEIVAQSTAEAEYVAGAAAANQAIWLRKILLDLG 1172

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
             +Q   T I+CDS SAIAIA+NPV H +TKHI +K H IREA+++ E++L  C ++ Q+A
Sbjct: 1173 AEQLEATEIYCDSKSAIAIAENPVQHGKTKHIQVKFHVIREAVKNHEIKLIHCCSDLQVA 1232

Query: 541  DIFTKALPREKFQDLRRKLGVQPKH 615
            DI TKALP+ +F+ LR  +GV  K+
Sbjct: 1233 DILTKALPKARFERLRELIGVSIKN 1257


>gb|AIC77183.1| polyprotein [Gossypium barbadense]
          Length = 1369

 Score =  875 bits (2261), Expect = 0.0
 Identities = 467/1134 (41%), Positives = 679/1134 (59%), Gaps = 39/1134 (3%)
 Frame = +1

Query: 1171 DLSHVVVPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEK---LTEEQMKDFK 1341
            D+  + VP     NY  W ++M+ L  S D ++ V+  + EP D      L+ +  K  +
Sbjct: 3    DVIQLQVPQLTKTNYGNWSIRMKALLGSQDCWEIVEKGYIEPGDAATEAALSNDAKKALR 62

Query: 1342 QKRSRNAAVLSMIQRGVTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDY 1521
            + R ++   L+ I +G+  S F KI  +K AK AWE+L++ FQG  K + ++LQ+LR ++
Sbjct: 63   EARKKDQKALNSIFQGMDESTFEKISDVKNAKNAWEILQKSFQGVEKAKKVRLQSLRAEF 122

Query: 1522 ENTKMKENESLNDYSSRLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTK 1701
            E  KMK +E+++DY++R+  ++N+MK  G+ +++ R++EKIL S+  KF+ ++  IE +K
Sbjct: 123  EMLKMKSSENIDDYANRVKSVVNEMKRNGETLDEVRVMEKILRSLTRKFEYVVVAIEESK 182

Query: 1702 DLKTLGIQELLSSLKSYEQRMTRHSDKA-IESAFQSSLQGDKKPPQNHXXXXXXXXXXXX 1878
            DL  + ++EL+ SL+++EQ+M  + D   +  A  S L  D     N+            
Sbjct: 183  DLSKMSLEELVGSLQAHEQKMKLNEDSENLNQALHSKLSIDDGETSNNFSQGRGNRRGYR 242

Query: 1879 XXXXXXXXX---------QSYGSFRGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXX 2031
                              QSYG ++    +   + G G+  +     ++N          
Sbjct: 243  GGYRGGNRGGRGSRGRGNQSYGRYQENKDYQTSNRGRGSRGRGRGRFQENKSQVQCYNCN 302

Query: 2032 XXXXXXXXQFGHLEKFCRKKNQ-QQANFL------EEKQENENVFFCHSANVERS-DTWF 2187
                    ++GH    CR  ++  + N +       EK E+ +VF  +  N +R    W+
Sbjct: 303  --------KYGHFSYECRSTHKVDERNHVAVAAEGNEKVES-SVFLTYGENEDRKRSVWY 353

Query: 2188 LDSGCSNHMTGDESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGIK-YINDVLL 2364
            LD+G SNHM G + +  ++    + Q+  G+ +  ++KGKGK+ +    G K YI+DV  
Sbjct: 354  LDNGASNHMCGRKELFTELDETVHGQITFGDNSHAEIKGKGKVVITQRNGEKKYISDVYY 413

Query: 2365 VPDLTQNLLSVGQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPITFRYEEH 2544
            VP L  NL+S+GQL+E GY V  +    +I NK  + EL+ ++ M RNR F +     E 
Sbjct: 414  VPALKSNLISLGQLLEKGYEVHMKDRSLAIRNK--SGELVVRVDMTRNRLFTLDIESGEV 471

Query: 2545 SALKATTTDEALLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKP 2724
              +K    +E+ LWH R GHL F  L LL + NMV GLP I+  + +CE C  GK HR+ 
Sbjct: 472  KCMKTDLKNESWLWHLRYGHLGFSGLKLLSKTNMVNGLPSINHPDQLCEACVKGKQHRQK 531

Query: 2725 FPKGVAWRAKEILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGI 2904
            F  G + RA+  LE+VHTD+ GP    S G N Y++ FIDD+SR  WVYF+K KS+    
Sbjct: 532  FEVGKSRRARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEK 591

Query: 2905 FKKFKNFVEKQTGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERK 3084
            FK+FK  VEKQ+G ++KILRSD+G EY +K ++ FC+D G+  QLT R TPQQNGV ERK
Sbjct: 592  FKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERK 651

Query: 3085 NQTVVEMAKSMMHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHL 3264
            N+T+++MA+SM+  K LP++FWAEAV  AVYLLN+ PTK++ +KTP EAW+G KP V HL
Sbjct: 652  NRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHL 711

Query: 3265 KVFGCVCYSQIPKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXX 3444
            K+FGC+ Y+ +P+Q+R KLD+  EKCIF+GY  +SKAYRLY+  TK +I+SRDV FD   
Sbjct: 712  KIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEAD 771

Query: 3445 XXXXXXXXKEGPSFPTNKMQDEAHVESDENQP--SHDEVXXXXXXXXXXXXXXRKFRSLT 3618
                    K+      N+  +    + D+  P  +                   + RSL 
Sbjct: 772  YWRWSEEEKKVEGLFFNEDDNNQEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRSLN 831

Query: 3619 EIYNAN-----------FC---HVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDR 3756
            +IYN+            FC                  WKKAM++EI  I +N+TWELT  
Sbjct: 832  DIYNSTEPVETQFDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELTSL 891

Query: 3757 PLDKDVIGVKWVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAII 3936
            P     IGVKWVYK K N +G V++ KARLVAKGY Q+ G+DYDE FAPVAR+DT+R +I
Sbjct: 892  PEGHSPIGVKWVYKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLLI 951

Query: 3937 SLAGQKGWLLYQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPR 4116
            ++A Q  W +YQ+DVKSAFLNG L+EEVY+ QP G+ ++GKE+KVY+LKK+LYGLKQAPR
Sbjct: 952  AVAAQYKWKIYQMDVKSAFLNGYLEEEVYIEQPPGYSIQGKEDKVYRLKKSLYGLKQAPR 1011

Query: 4117 AWYSQIDGYFKEKGFDQSKSEPTLYVKSQG-ENILIVALYVDDLVFTGNNKKMIEDFKNE 4293
            AW ++ID YF+  GF +S  E TLY K  G  +I+IV LYVDD++FTGNN  M +DFK  
Sbjct: 1012 AWNTRIDEYFRRNGFIKSPHEHTLYTKKNGYGDIMIVCLYVDDMIFTGNNPGMSDDFKKA 1071

Query: 4294 MMQKYEMSDLGLLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTP 4455
            M +++EM+D+G +++FLG+E+ Q  DG+F+ Q+KY E+IL  F M +CKP  TP
Sbjct: 1072 MTKEFEMTDIGEMSYFLGVEVKQMQDGIFVSQKKYAEQILNKFKMKDCKPVVTP 1125



 Score =  194 bits (493), Expect = 4e-46
 Identities = 98/202 (48%), Positives = 127/202 (62%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDI +A  L+SRFM  P Q H+   KRILRY++GT + G+ +  + +  L G+ DSD+GG
Sbjct: 1161 PDITYAVGLVSRFMEKPKQDHLIAAKRILRYIKGTMNHGLFYTHSQDSKLVGYSDSDYGG 1220

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSGY F + S VF W SKKQQT                T QA+WL+ I  +IG
Sbjct: 1221 DLDDRKSTSGYAFHISSAVFSWSSKKQQTIALSTCEAEYMAAATCTCQAMWLKNILGEIG 1280

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
                 P TI+ D+ SAI++AKNPV HSR+KHI  K+HFIRE +++  V+L  C T DQLA
Sbjct: 1281 VSNEGPITIYVDNKSAISLAKNPVSHSRSKHIDTKYHFIREQVKNKNVELVHCRTEDQLA 1340

Query: 541  DIFTKALPREKFQDLRRKLGVQ 606
            DIFTK L  E F   + KLG++
Sbjct: 1341 DIFTKPLKVETFNKFKEKLGMK 1362


>gb|KYP50361.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1310

 Score =  865 bits (2236), Expect = 0.0
 Identities = 463/1103 (41%), Positives = 660/1103 (59%), Gaps = 20/1103 (1%)
 Frame = +1

Query: 1210 NYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLSMIQRG 1389
            NYD W ++M+ L  S D +D V+N +EEPV TE  T  QM   K  R+++ A L ++ R 
Sbjct: 18   NYDNWKLQMKALLGSQDNWDVVENGYEEPVTTEGYTNAQMNALKVARAKDKAALYLLYRA 77

Query: 1390 VTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESLNDYSS 1569
            V  S F KI   K +KEAW++L++  +GD +V+ ++LQTLR + EN +MKE+E ++++ +
Sbjct: 78   VDESGFEKIANAKSSKEAWDILEKAKKGDERVKQVRLQTLRGELENMRMKESEGVSEFIT 137

Query: 1570 RLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELLSSLKS 1749
            R+  + N++   G+ +   R+VEKIL S+ + F+ I+  IE +KDL TL ++EL  SL++
Sbjct: 138  RVETVANKLNRNGENLPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVEELTGSLEA 197

Query: 1750 YEQRMTRHSDK--AIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQSYGSF 1923
            YEQR     +K  ++E A Q+     ++                           + G  
Sbjct: 198  YEQRKKNKKEKGESLEQALQAKATIKEEK--------------------VLYAQNNRGRG 237

Query: 1924 RGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLEKFCR--KKNQ 2097
            RG+    +   G GN ++C   K  N                    GH+ K CR  KK +
Sbjct: 238  RGRGLGGRGRGGRGNEYECYSIKCYN----------------CGNLGHISKDCRSEKKKE 281

Query: 2098 QQANFLEEKQENENVFFCHSANVE------RSDTWFLDSGCSNHMTGDESILVDIGTAGN 2259
            +  NFL E+++   +        E       +  W+LD+G SNHM GDE +   +     
Sbjct: 282  EPTNFLAEEEDEGLLLVTTIPETEIKPSCTDNSVWYLDTGASNHMCGDEHLFKMLSKEEV 341

Query: 2260 SQVKLGNGAIVQVKGKGKISVKTEIG-IKYINDVLLVPDLTQNLLSVGQLVEHGYIVVFE 2436
              V  G+ + V VKG+G I  +   G I  I DV  VPDL  N+LS+GQL+E GY V+ +
Sbjct: 342  GSVSFGDASKVTVKGRGTIRYQQRNGKIGEIRDVYYVPDLKSNILSMGQLMEKGYSVLMK 401

Query: 2437 GEGCSIYNK-GRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWHKRLGHLNF 2613
                 + +K GR   L+ ++ M +NR + +  +      ++    DEA+ WH+R GHL+F
Sbjct: 402  DRELQLKDKLGR---LVAQVEMKKNRMYKLELKIVRDECMQLDLEDEAMKWHRRFGHLHF 458

Query: 2614 QSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILELVHTDLCGP 2793
            + L  L +K MV GLP++   +  CE C +GKH R  FP+   +RAKE L L+HTDLCGP
Sbjct: 459  RGLTELVKKEMVIGLPKMEFEKKFCEECVIGKHARTSFPRSSEYRAKEQLGLIHTDLCGP 518

Query: 2794 MRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSFIKILRSDQ 2973
            +   S     YF+ FIDDFSR TWVYF+KEK +VF  FKKFK  VEK+T  F+K +RSD+
Sbjct: 519  ITPESFSGKKYFLSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVEKETSKFVKAVRSDR 578

Query: 2974 GKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEKGLPKSFWA 3153
            G E+ S EF+K+CE+ G+ R LT  Y+PQQNGV ERKN+T+++M +SM+  K +PK FWA
Sbjct: 579  GGEFTSFEFNKYCEEHGIKRFLTAPYSPQQNGVAERKNRTILDMVRSMLKGKNMPKKFWA 638

Query: 3154 EAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQKRYKLDETS 3333
            EAV  AVY+ NR P   L  KTP E W+G KPSV HL+VFG + Y Q+P+Q+R KL++ S
Sbjct: 639  EAVQCAVYVQNRCPHAKLGEKTPQEIWSGMKPSVSHLRVFGSLAYGQVPRQQRTKLEDRS 698

Query: 3334 EKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPSFPTNKMQDEA 3513
            +K IF+GY  KSKAY+L+    K V+VSRDV  +           +   S  ++ +   +
Sbjct: 699  KKYIFIGYDEKSKAYKLFDPDNKKVVVSRDVHVEETKQWCWSNSAEVETSSDSSDIVVPS 758

Query: 3514 HVESDENQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIYNAN--------FCHVXXXXXXX 3669
             + + E      E+               + RSL EIY+                     
Sbjct: 759  TITTTELSDEESELQQP------------RMRSLREIYDTTSEVHAVCLLADSEDLSFEK 806

Query: 3670 XXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSVQRNKARLV 3849
                  W+ AM++E   IE+N TWELT+ P     IGVKWVYK K NA+G V+R KARLV
Sbjct: 807  AVQDEKWRTAMDEEFEAIERNKTWELTNLPEGARPIGVKWVYKKKLNAEGEVERYKARLV 866

Query: 3850 AKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGELKEEVYVN 4029
             KGY Q+ G+DYDE FAPV RM+++R +ISLA Q+ W + Q+DVKSAFLNG LKEEVYV 
Sbjct: 867  VKGYKQKEGVDYDEVFAPVTRMESIRLLISLAAQRQWKILQMDVKSAFLNGVLKEEVYVE 926

Query: 4030 QPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPTLYVKSQGE 4209
            QP G+   G+E+KV +L+KALYGLKQAPRAW  +IDGYFK+ G++Q   E  LY+K+ G+
Sbjct: 927  QPLGYMKRGEEKKVLRLRKALYGLKQAPRAWNERIDGYFKKNGYEQCPYEHALYIKNSGK 986

Query: 4210 NILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQDDDGVFICQ 4389
            ++++VALYVDDL+FTG+N K+I++FK  M +++EM+DLGL+ +FLG+E+ Q D+G+FI Q
Sbjct: 987  DMMVVALYVDDLIFTGSNAKLIKEFKEIMEKEFEMTDLGLMKYFLGLEVKQSDEGIFISQ 1046

Query: 4390 EKYVEKILKIFDMSECKPKDTPL 4458
            E+Y  +ILK F M +C P  TP+
Sbjct: 1047 ERYALEILKKFKMEDCNPVSTPM 1069



 Score =  164 bits (414), Expect = 8e-37
 Identities = 82/204 (40%), Positives = 119/204 (58%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PD+M +  + SRFM +PS  H    KRILRY++G+   G+ + K+ +  L G+ DSDW G
Sbjct: 1104 PDLMLSVGITSRFMEDPSYTHWKALKRILRYVRGSLSLGLFYSKSDDYRLVGYSDSDWCG 1163

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSGY+F LG+  F W SKK+                     A+WL  +   +G
Sbjct: 1164 DVDDRKSTSGYVFLLGNTAFTWLSKKKPIVTLSTCEAEYVAASWSVCHAVWLSNLLRHMG 1223

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              +     I  D+ SAI +AKNPV+H R+KHI ++ HFIRE I  G+V+LE  G+  Q A
Sbjct: 1224 VIRDKAIVIRVDNKSAIELAKNPVNHGRSKHIDVRFHFIREQIGQGKVELEHVGSRVQAA 1283

Query: 541  DIFTKALPREKFQDLRRKLGVQPK 612
            DIFTK+LP    ++ ++ +G++ +
Sbjct: 1284 DIFTKSLPTTLLENCKKLIGMRDR 1307


>gb|KYP35753.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1318

 Score =  861 bits (2225), Expect = 0.0
 Identities = 464/1111 (41%), Positives = 662/1111 (59%), Gaps = 28/1111 (2%)
 Frame = +1

Query: 1210 NYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSRNAAVLSMIQRG 1389
            NYD W ++M+ L  S D +D V+N +EEPV TE  T  Q+   K  R+++ A L ++ R 
Sbjct: 18   NYDNWKLQMKALLGSQDNWDVVENGYEEPVTTEGYTNAQLNALKVARAKDKATLYLLYRA 77

Query: 1390 VTPSIFPKIMRLKKAKEAWEVLKQEFQGDVKVRAIKLQTLRRDYENTKMKENESLNDYSS 1569
            V  S F KI   K +KEAW++L++  +GD +V+ ++LQTLR + EN +MKE+E ++++ +
Sbjct: 78   VDESSFEKIANAKSSKEAWDILEKAKKGDERVKQVRLQTLRGELENMRMKESEGVSEFIT 137

Query: 1570 RLTDLINQMKSYGDEIEDQRIVEKILISIPEKFDPIIAVIENTKDLKTLGIQELLSSLKS 1749
            R+  + N++   G+ +   R+VEKIL S+ + F+ I+  IE +KDL TL ++EL  SL++
Sbjct: 138  RVETVANKLNRNGENLPSSRVVEKILRSLTDDFENIVCAIEESKDLSTLTVEELTGSLEA 197

Query: 1750 YEQRMTRHSDK--AIESAFQSSLQGDKKPPQNHXXXXXXXXXXXXXXXXXXXXXQSYGSF 1923
            YEQR     +K  ++E A Q+     ++                           + G  
Sbjct: 198  YEQRKKNKKEKGESLEQALQAKATIKEEK--------------------VLYAQNNRGRG 237

Query: 1924 RGQSSFDKRSFGDGNSHKCSICKKDNHEXXXXXXXXXXXXXXXXQFGHLEKFCR--KKNQ 2097
            RG+    +   G GN ++C   K  N                    GH+ K CR  KK +
Sbjct: 238  RGRGLGGRGRGGRGNEYECYSIKCYN----------------CGNLGHISKDCRSEKKKE 281

Query: 2098 QQANFLEEKQ-----------ENENVFFCHSA---NVERSDTWFLDSGCSNHMTGDESIL 2235
            +  NFL E++           E E    C S    +   +  W+LD+G SNHM GDE + 
Sbjct: 282  EPTNFLAEEEDEGLLLVTTIPETEIKPSCSSEIKPSCTDNSVWYLDTGASNHMCGDEHLF 341

Query: 2236 VDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIG-IKYINDVLLVPDLTQNLLSVGQLVE 2412
              +       V  G+ + V VKG+G I  +   G I  I DV  VPDL  N+LS+GQL+E
Sbjct: 342  KMLSKEEVGSVSFGDASKVTVKGRGTIRYQQRNGKIGEIRDVYYVPDLRSNILSMGQLME 401

Query: 2413 HGYIVVFEGEGCSIYNK-GRNKELMQKITMGRNRSFPITFRYEEHSALKATTTDEALLWH 2589
             GY V+ +     + +K GR   L+ ++ M +NR + +  +      ++    DEA+ WH
Sbjct: 402  KGYSVLMKDRELQLKDKLGR---LVAQVEMKKNRMYKLELKIVRDECMQLDLEDEAMKWH 458

Query: 2590 KRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALGKHHRKPFPKGVAWRAKEILEL 2769
            +R GHL+F+ L  L +K MV GLP++   +  CE C +GKH R  FP+   +RAKE L L
Sbjct: 459  RRFGHLHFRGLTELVKKEMVIGLPKMEFEKKFCEECVIGKHARTSFPRSSEYRAKEQLGL 518

Query: 2770 VHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEKSQVFGIFKKFKNFVEKQTGSF 2949
            +HTDLCGP+   S     YF+ FIDDFSR TWVYF+KEK +VF  FKKFK  VEK+  +F
Sbjct: 519  IHTDLCGPITPESFSGKKYFLSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVEKEMSTF 578

Query: 2950 IKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQNGVVERKNQTVVEMAKSMMHEK 3129
            +K +RSD+G E+ S EF+K+CE+ G+ R LT  Y+PQQNGV ERKN+T+++M +SM+  K
Sbjct: 579  VKAVRSDRGGEFTSVEFNKYCEEHGIKRFLTAPYSPQQNGVAERKNRTILDMVRSMLKGK 638

Query: 3130 GLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRKPSVRHLKVFGCVCYSQIPKQK 3309
             +PK FWAEAV  AVY+ NR P   L  KTP E W+G KPSV HL+VFG + Y Q+P+Q+
Sbjct: 639  NMPKKFWAEAVQCAVYVQNRCPHAKLGEKTPQEIWSGMKPSVSHLRVFGSLAYGQVPRQQ 698

Query: 3310 RYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDVIFDXXXXXXXXXXXKEGPSFP 3489
            R KL++ S+K IF+GY  KSKAY+L+    K V+VSRDV  +           +   S  
Sbjct: 699  RTKLEDRSKKYIFIGYDEKSKAYKLFDPDNKKVVVSRDVHVEETKQWCWSNSAEVETSSD 758

Query: 3490 TNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXRKFRSLTEIYNAN--------FCH 3645
            ++ +   + + + E      E+               + RSL EIY+             
Sbjct: 759  SSDIVVPSTITTTELSDEESELQQP------------RMRSLREIYDTTSEVHAVCLLAD 806

Query: 3646 VXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVKWVYKVKYNADGSV 3825
                          W+ AM++E   IE+N TWELT+ P     IGVKWVYK K NA+G V
Sbjct: 807  SEDLSFEKAVQDEKWRTAMDEEFEAIERNKTWELTNLPEGARPIGVKWVYKKKLNAEGEV 866

Query: 3826 QRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLLYQLDVKSAFLNGE 4005
            +R KARLV KGY Q+ G+DYDE FAPV RM+++R +ISLA Q+ W + Q+DVKSAFLNG 
Sbjct: 867  ERYKARLVVKGYKQKEGVDYDEVFAPVTRMESIRLLISLAAQRQWKILQMDVKSAFLNGV 926

Query: 4006 LKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYFKEKGFDQSKSEPT 4185
            LKEEVYV QP G+   G+E+KV +L+KALYGLKQAPRAW  +IDGYFK+ G++Q   E  
Sbjct: 927  LKEEVYVEQPLGYMKRGEEKKVLRLRKALYGLKQAPRAWNERIDGYFKKNGYEQCPYEHA 986

Query: 4186 LYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLGLLNHFLGMEIYQD 4365
            LY+K+ G+++++VALYVDDL+FTG+N K+I++FK  M +++EM+DLGL+ +FLG+E+ Q 
Sbjct: 987  LYIKNSGKDMMVVALYVDDLIFTGSNAKLIKEFKEIMEKEFEMTDLGLMKYFLGLEVKQS 1046

Query: 4366 DDGVFICQEKYVEKILKIFDMSECKPKDTPL 4458
            D+G+FI QE+Y  +ILK F M +C P  TP+
Sbjct: 1047 DEGIFISQERYALEILKKFKMEDCNPVSTPM 1077



 Score =  165 bits (417), Expect = 4e-37
 Identities = 83/202 (41%), Positives = 117/202 (57%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PD+M +  + SRFM +PS  H    KRILRY++G+   G+ + K+ +  L G+ DSDW G
Sbjct: 1112 PDLMLSVGITSRFMEDPSYTHWKALKRILRYVRGSLSLGLFYSKSDDYRLVGYSDSDWCG 1171

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DD KSTSGY+F LG+  F W SKKQ                     A+WL  +   +G
Sbjct: 1172 DVDDRKSTSGYVFLLGNTAFTWLSKKQPIVTLSTCEAEYVAASWSVCHAVWLSNLLRHMG 1231

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEFCGTNDQLA 540
              +     I  D+ SAI +AKNPV+H R+KHI ++ HFIRE I  G+V+LE  G+  Q A
Sbjct: 1232 VIRDEAIVIRVDNKSAIELAKNPVNHGRSKHIDVRFHFIREQIRQGKVELEHVGSRVQAA 1291

Query: 541  DIFTKALPREKFQDLRRKLGVQ 606
            DIFTK LP    ++ ++ +G++
Sbjct: 1292 DIFTKPLPTTLLENCKKLIGMR 1313


>gb|OMO68768.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 1149

 Score =  854 bits (2207), Expect = 0.0
 Identities = 437/769 (56%), Positives = 529/769 (68%)
 Frame = +1

Query: 2167 ERSDTWFLDSGCSNHMTGDESILVDIGTAGNSQVKLGNGAIVQVKGKGKISVKTEIGIKY 2346
            ++ + W++DS CSNHMT DES+  ++ ++                               
Sbjct: 283  KKLNKWYIDSACSNHMTSDESMFHELDSS------------------------------- 311

Query: 2347 INDVLLVPDLTQNLLSVGQLVEHGYIVVFEGEGCSIYNKGRNKELMQKITMGRNRSFPIT 2526
                       QNLLSVGQLVE+GY + F    C+IY+K   + ++ ++ +  +R FP+ 
Sbjct: 312  --------QAAQNLLSVGQLVENGYALHFADNYCTIYDKNDRRRVLAQVKVV-DRCFPLN 362

Query: 2527 FRYEEHSALKATTTDEALLWHKRLGHLNFQSLNLLHQKNMVGGLPQIHEIEGVCEGCALG 2706
             +  +  ALK                                GLP+I E + VCEGCALG
Sbjct: 363  LKSVKDVALK--------------------------------GLPKIEEKQEVCEGCALG 390

Query: 2707 KHHRKPFPKGVAWRAKEILELVHTDLCGPMRNPSHGNNLYFILFIDDFSRMTWVYFMKEK 2886
            KHHR+ FPKGVAWRAK +LELVHTD+CGPM  PSH  N YFILFIDD++RMTWVYFM+++
Sbjct: 391  KHHRQAFPKGVAWRAKSMLELVHTDVCGPMTTPSHSGNRYFILFIDDYTRMTWVYFMRQR 450

Query: 2887 SQVFGIFKKFKNFVEKQTGSFIKILRSDQGKEYNSKEFDKFCEDEGMHRQLTTRYTPQQN 3066
            S+VF IFKKFK+ VEKQ+G +IK+LRSD GKEY S+EF+ FCEDE + RQLT  Y+PQQN
Sbjct: 451  SEVFTIFKKFKSLVEKQSGHYIKVLRSDNGKEYTSREFEMFCEDEVVERQLTVGYSPQQN 510

Query: 3067 GVVERKNQTVVEMAKSMMHEKGLPKSFWAEAVYTAVYLLNRSPTKALDNKTPLEAWNGRK 3246
            GV ERKNQTV+EMAKSM+ EK LPKSFWAEAV TAVYL+NR PTKA+ N+ P EAW+GRK
Sbjct: 511  GVSERKNQTVMEMAKSMLFEKNLPKSFWAEAVNTAVYLINRCPTKAVWNQAPFEAWSGRK 570

Query: 3247 PSVRHLKVFGCVCYSQIPKQKRYKLDETSEKCIFVGYSSKSKAYRLYSLKTKNVIVSRDV 3426
            PSV HLKVFGCVCY+QIPK+KR+KLDETSEKCIFVGYS+ SK YRLYSLK+  VI+SRDV
Sbjct: 571  PSVEHLKVFGCVCYAQIPKEKRHKLDETSEKCIFVGYSTMSKGYRLYSLKSSKVIISRDV 630

Query: 3427 IFDXXXXXXXXXXXKEGPSFPTNKMQDEAHVESDENQPSHDEVXXXXXXXXXXXXXXRKF 3606
            IFD            E  S P       +  E  E++ S                  RK 
Sbjct: 631  IFDENVTWNWEENKVEEISVPMGLKHQNSDFEDGEDEGSSSS---------SQSSTPRKI 681

Query: 3607 RSLTEIYNANFCHVXXXXXXXXXXXXXWKKAMEDEIHVIEKNNTWELTDRPLDKDVIGVK 3786
            RSL+++Y                               IEKN TW L DRP DK+VIGVK
Sbjct: 682  RSLSDVYG----------------------------RFIEKNKTWHLVDRPKDKEVIGVK 713

Query: 3787 WVYKVKYNADGSVQRNKARLVAKGYSQQPGIDYDETFAPVARMDTVRAIISLAGQKGWLL 3966
            WVYKVK+N+DGSVQR+KARLVAKGYSQQPGID+DE FAPVAR+DTVRA+I+LA  KGW L
Sbjct: 714  WVYKVKHNSDGSVQRHKARLVAKGYSQQPGIDFDENFAPVARLDTVRAVIALAAHKGWHL 773

Query: 3967 YQLDVKSAFLNGELKEEVYVNQPQGFEVEGKEEKVYKLKKALYGLKQAPRAWYSQIDGYF 4146
            YQLDVKSAFLNGELKE+VYV QPQGF +EG+EEKVYKL KALYGLKQAPRAWYS ID YF
Sbjct: 774  YQLDVKSAFLNGELKEDVYVEQPQGFVIEGEEEKVYKLSKALYGLKQAPRAWYSNIDSYF 833

Query: 4147 KEKGFDQSKSEPTLYVKSQGENILIVALYVDDLVFTGNNKKMIEDFKNEMMQKYEMSDLG 4326
             ++GF++SKSEPTLYVK    + LIVA+YVDDLVFTGNN+KM+  FK +MM+KYEMSDLG
Sbjct: 834  IKQGFEKSKSEPTLYVKHHSGDFLIVAIYVDDLVFTGNNEKMMRKFKEDMMKKYEMSDLG 893

Query: 4327 LLNHFLGMEIYQDDDGVFICQEKYVEKILKIFDMSECKPKDTPLVVNEK 4473
            L++HFLG+E++Q +DGVFICQ+KY EKILK F+MS+CKP  TPL+ NEK
Sbjct: 894  LMHHFLGIEVHQSNDGVFICQKKYAEKILKKFNMSDCKPVATPLIANEK 942



 Score =  223 bits (569), Expect = 2e-55
 Identities = 108/172 (62%), Positives = 126/172 (73%)
 Frame = +1

Query: 1    PDIMFAASLLSRFMHNPSQIHMGVGKRILRYLQGTKDFGIKFEKNANINLHGFCDSDWGG 180
            PDIMFAASLLSRFM++ S +H G  KR+LRY+QGT D+GIK+  +    L GF DSDW G
Sbjct: 972  PDIMFAASLLSRFMNSSSHLHFGAAKRVLRYIQGTLDYGIKYGSSNEPKLVGFSDSDWAG 1031

Query: 181  CTDDMKSTSGYIFSLGSGVFCWCSKKQQTXXXXXXXXXXXXXXXXTSQAIWLRRIFEDIG 360
              DDMKSTSGY+FS GSGVF WCSKKQQT                T QAIWL+RI EDI 
Sbjct: 1032 SLDDMKSTSGYVFSFGSGVFSWCSKKQQTVAQSSAEAEYVAASLATQQAIWLKRIVEDIE 1091

Query: 361  EKQFNPTTIFCDSMSAIAIAKNPVHHSRTKHIALKHHFIREAIEDGEVQLEF 516
            EK      I+CD+ SAIA+AKNPV+HSRTKHIA+KHHFIR+AIE+G+VQL F
Sbjct: 1092 EKPAEAVIIYCDNKSAIAMAKNPVYHSRTKHIAIKHHFIRDAIEEGKVQLNF 1143



 Score = 64.7 bits (156), Expect = 2e-06
 Identities = 26/56 (46%), Positives = 41/56 (73%)
 Frame = +1

Query: 1189 VPIFDGENYDYWCVKMETLFDSLDVFDDVKNTFEEPVDTEKLTEEQMKDFKQKRSR 1356
            VP+F+GENYD+W +K++TL  SLD ++ V++ +EEP  T  L++ Q K+ K KR +
Sbjct: 127  VPVFEGENYDFWKIKLQTLLRSLDAWEVVESGYEEPESTSNLSQAQKKELKDKRKQ 182