BLASTX nr result

ID: Chrysanthemum22_contig00017159 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00017159
         (380 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVH97376.1| F-box domain, cyclin-like protein [Cynara cardunc...    77   7e-14
ref|XP_022041809.1| F-box protein At5g07610-like [Helianthus ann...    55   5e-06
gb|PON92419.1| F-box domain containing protein [Trema orientalis]      54   6e-06
ref|XP_022969759.1| F-box protein At5g07610 [Cucurbita maxima]         54   8e-06

>gb|KVH97376.1| F-box domain, cyclin-like protein [Cynara cardunculus var.
           scolymus]
          Length = 365

 Score = 76.6 bits (187), Expect = 7e-14
 Identities = 53/108 (49%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
 Frame = -3

Query: 336 GRDLLELSLDTVEGNELLLPMHIVVSDDDLLNEILVRLPXXXXXXXXXXXKRWLSLIKSP 157
           GR   +  +DT E   L    + V+S DDLL EIL+RLP           KRWLSLI  P
Sbjct: 6   GRASKKQIIDT-EDKGLPSSAYEVLSYDDLLIEILLRLPAISLHLFKSVSKRWLSLITDP 64

Query: 156 TFIRRRSQIPNIDHPSGLFIQRGSKTSLYGFAPLDIRI---RSRLETT 22
            F  RRSQI NID PSGLF+QR      Y F P DIRI   RS + TT
Sbjct: 65  NFTLRRSQITNIDPPSGLFLQRPYVPYDYEFVPFDIRIPSNRSPINTT 112


>ref|XP_022041809.1| F-box protein At5g07610-like [Helianthus annuus]
 gb|OTG22399.1| putative F-box domain-containing protein [Helianthus annuus]
          Length = 434

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
 Frame = -3

Query: 270 IVVSDDDLLNEILVRLPXXXXXXXXXXXKRWLSLIKSPTFIRRRSQIPNIDHPSGLFIQR 91
           ++ S +DLL EI ++LP           K+W SLIKSP F   R+  PN+D PSGLF + 
Sbjct: 54  LIASSEDLLTEIFLQLPVISLIRFTSASKQWYSLIKSPNFSLIRN--PNLDPPSGLFFEG 111

Query: 90  GSKTSLYGFAPL-----DIRIRSRLETTFKT 13
               S Y + PL     D  + S ++  F T
Sbjct: 112 WDARSKYHYVPLQTGNSDHSVNSVIKPPFTT 142


>gb|PON92419.1| F-box domain containing protein [Trema orientalis]
          Length = 352

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 29/63 (46%), Positives = 37/63 (58%)
 Frame = -3

Query: 270 IVVSDDDLLNEILVRLPXXXXXXXXXXXKRWLSLIKSPTFIRRRSQIPNIDHPSGLFIQR 91
           I+ S+DDLL+EIL RLP           K W SLI  P F  RR+  PN +  SGLF++R
Sbjct: 24  IIASNDDLLSEILFRLPIKALVKFKSVSKHWRSLISDPKFALRRNTNPNPNPASGLFVKR 83

Query: 90  GSK 82
            S+
Sbjct: 84  SSR 86


>ref|XP_022969759.1| F-box protein At5g07610 [Cucurbita maxima]
          Length = 402

 Score = 53.9 bits (128), Expect = 8e-06
 Identities = 32/65 (49%), Positives = 41/65 (63%)
 Frame = -3

Query: 267 VVSDDDLLNEILVRLPXXXXXXXXXXXKRWLSLIKSPTFIRRRSQIPNIDHPSGLFIQRG 88
           V+++DDLL EIL+RLP           KRWL+LI +P+F RRRS I N   PSG+F+ R 
Sbjct: 26  VLNNDDLLLEILIRLPIRSLLTFKSVSKRWLALISNPSFSRRRS-ISNPPIPSGIFLARP 84

Query: 87  SKTSL 73
              SL
Sbjct: 85  YPDSL 89


Top