BLASTX nr result

ID: Chrysanthemum22_contig00016279 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00016279
         (763 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVI04323.1| Helicase, C-terminal [Cynara cardunculus var. sco...   168   1e-43
ref|XP_022021874.1| chromatin structure-remodeling complex prote...   110   1e-23
gb|OTF86807.1| putative SNF2-related, N-terminal domain-containi...   110   1e-23
ref|XP_022021873.1| chromatin structure-remodeling complex prote...   110   1e-23
ref|XP_022021872.1| chromatin structure-remodeling complex prote...   110   1e-23
ref|XP_023760747.1| chromatin structure-remodeling complex prote...    96   1e-18

>gb|KVI04323.1| Helicase, C-terminal [Cynara cardunculus var. scolymus]
          Length = 2874

 Score =  168 bits (425), Expect = 1e-43
 Identities = 125/288 (43%), Positives = 148/288 (51%), Gaps = 34/288 (11%)
 Frame = -1

Query: 763  RGKKSHNVVLGIPGVKASSPVSKPETVSLAVPSTASQKVNEPLASGXXXXXXXXXXXXXX 584
            RG+K +NVVL IPG++ASSPVSKPET SL VP+T S+  N+PL S               
Sbjct: 1829 RGRKPNNVVLAIPGLRASSPVSKPETGSLVVPATTSEIQNQPLVSDATAVNVVSNIPTPG 1888

Query: 583  XXXXXXXXXXXXXXXXXSDIASTVTSVPATSLATT------------PDVGTPKTPVSDP 440
                              DIA   TSVPATS A +            PDVGT + P+S  
Sbjct: 1889 TVGTPVTVSPPETSKS--DIALPKTSVPATSFAASSIFADPGETLVDPDVGTTQMPLSVS 1946

Query: 439  V----------SSETATPAVTVPSGSLSVSPNPE-LKPGRGRGKKSQSGTXXXXXXXXXX 293
            V          SS+ A P VTVP  S SVSP+   LK GRGRG+K+QSG           
Sbjct: 1947 VGSQPTELGTLSSQIAAPIVTVPLDSRSVSPSDTALKQGRGRGRKAQSGLEVPRRKEKKK 2006

Query: 292  XDTVDAQEPNSNEPAQKKTRVSSGRKPVATRRTLRSEAQKN--------NQDSKLAEP-- 143
             + VDAQE  S  PAQKK+R+SSGRK VATR  LR+EAQK         +Q SKLAEP  
Sbjct: 2007 EEMVDAQEQKSTRPAQKKSRISSGRKTVATRSMLRNEAQKKASTTDDHFSQGSKLAEPSL 2066

Query: 142  -SSLHVKENTSTLADVNXXXXXXXXXXXXXXXSIHGEKVAGPKDSSLA 2
             SSL+VKE  S LA+ +                 HGEKV   KD S+A
Sbjct: 2067 NSSLNVKEQLSALAEADKSADTSTMDNSTSN---HGEKVVEAKDISVA 2111


>ref|XP_022021874.1| chromatin structure-remodeling complex protein SYD isoform X3
            [Helianthus annuus]
          Length = 2637

 Score =  110 bits (274), Expect = 1e-23
 Identities = 99/250 (39%), Positives = 117/250 (46%), Gaps = 14/250 (5%)
 Frame = -1

Query: 709  SPVSKPETVSLAVPSTASQKVNEPLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 530
            S V KPET S A P TA++  NE L S                                S
Sbjct: 1794 SSVGKPETGSPAAPFTATETGNETLVS---------EPTPVTAVTVATPVILTASEVPRS 1844

Query: 529  DIASTVTSVPATSLATTPDVGTPKTPVSDPV------SSETATPAVTVPSGSLSVSPNPE 368
            DIAS    V + ++A   DVGT + PVS  V      SS+TATP VTVP  SL VSP+  
Sbjct: 1845 DIASPRPPVSSVAVADV-DVGTTQMPVSGSVGSQPSVSSQTATP-VTVPVSSLPVSPDST 1902

Query: 367  LKPGRGRGKKSQSGTXXXXXXXXXXXD-----TVDAQEPNSNEPAQKKTRVSSGRKPVAT 203
             K GRGRG+K QSG                  TVD Q+  SNEPAQK+TR SSGRK VAT
Sbjct: 1903 SKKGRGRGRKDQSGVDPQPQPPRRRERRKKDDTVDVQDQKSNEPAQKRTRASSGRKTVAT 1962

Query: 202  RRTLRSEAQKNNQDSKLAEP---SSLHVKENTSTLADVNXXXXXXXXXXXXXXXSIHGEK 32
            R   R      NQ S++AEP   SS  V+E +S L +V+               S   EK
Sbjct: 1963 RSMAR------NQASEIAEPLPKSSSKVREKSSILVEVDTLSKSVGASRVDDSISTRKEK 2016

Query: 31   VAGPKDSSLA 2
            V  PKD  +A
Sbjct: 2017 VE-PKDVLVA 2025


>gb|OTF86807.1| putative SNF2-related, N-terminal domain-containing protein
            [Helianthus annuus]
          Length = 2681

 Score =  110 bits (274), Expect = 1e-23
 Identities = 99/250 (39%), Positives = 117/250 (46%), Gaps = 14/250 (5%)
 Frame = -1

Query: 709  SPVSKPETVSLAVPSTASQKVNEPLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 530
            S V KPET S A P TA++  NE L S                                S
Sbjct: 1785 SSVGKPETGSPAAPFTATETGNETLVS---------EPTPVTAVTVATPVILTASEVPRS 1835

Query: 529  DIASTVTSVPATSLATTPDVGTPKTPVSDPV------SSETATPAVTVPSGSLSVSPNPE 368
            DIAS    V + ++A   DVGT + PVS  V      SS+TATP VTVP  SL VSP+  
Sbjct: 1836 DIASPRPPVSSVAVADV-DVGTTQMPVSGSVGSQPSVSSQTATP-VTVPVSSLPVSPDST 1893

Query: 367  LKPGRGRGKKSQSGTXXXXXXXXXXXD-----TVDAQEPNSNEPAQKKTRVSSGRKPVAT 203
             K GRGRG+K QSG                  TVD Q+  SNEPAQK+TR SSGRK VAT
Sbjct: 1894 SKKGRGRGRKDQSGVDPQPQPPRRRERRKKDDTVDVQDQKSNEPAQKRTRASSGRKTVAT 1953

Query: 202  RRTLRSEAQKNNQDSKLAEP---SSLHVKENTSTLADVNXXXXXXXXXXXXXXXSIHGEK 32
            R   R      NQ S++AEP   SS  V+E +S L +V+               S   EK
Sbjct: 1954 RSMAR------NQASEIAEPLPKSSSKVREKSSILVEVDTLSKSVGASRVDDSISTRKEK 2007

Query: 31   VAGPKDSSLA 2
            V  PKD  +A
Sbjct: 2008 VE-PKDVLVA 2016


>ref|XP_022021873.1| chromatin structure-remodeling complex protein SYD isoform X2
            [Helianthus annuus]
          Length = 2689

 Score =  110 bits (274), Expect = 1e-23
 Identities = 99/250 (39%), Positives = 117/250 (46%), Gaps = 14/250 (5%)
 Frame = -1

Query: 709  SPVSKPETVSLAVPSTASQKVNEPLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 530
            S V KPET S A P TA++  NE L S                                S
Sbjct: 1793 SSVGKPETGSPAAPFTATETGNETLVS---------EPTPVTAVTVATPVILTASEVPRS 1843

Query: 529  DIASTVTSVPATSLATTPDVGTPKTPVSDPV------SSETATPAVTVPSGSLSVSPNPE 368
            DIAS    V + ++A   DVGT + PVS  V      SS+TATP VTVP  SL VSP+  
Sbjct: 1844 DIASPRPPVSSVAVADV-DVGTTQMPVSGSVGSQPSVSSQTATP-VTVPVSSLPVSPDST 1901

Query: 367  LKPGRGRGKKSQSGTXXXXXXXXXXXD-----TVDAQEPNSNEPAQKKTRVSSGRKPVAT 203
             K GRGRG+K QSG                  TVD Q+  SNEPAQK+TR SSGRK VAT
Sbjct: 1902 SKKGRGRGRKDQSGVDPQPQPPRRRERRKKDDTVDVQDQKSNEPAQKRTRASSGRKTVAT 1961

Query: 202  RRTLRSEAQKNNQDSKLAEP---SSLHVKENTSTLADVNXXXXXXXXXXXXXXXSIHGEK 32
            R   R      NQ S++AEP   SS  V+E +S L +V+               S   EK
Sbjct: 1962 RSMAR------NQASEIAEPLPKSSSKVREKSSILVEVDTLSKSVGASRVDDSISTRKEK 2015

Query: 31   VAGPKDSSLA 2
            V  PKD  +A
Sbjct: 2016 VE-PKDVLVA 2024


>ref|XP_022021872.1| chromatin structure-remodeling complex protein SYD isoform X1
            [Helianthus annuus]
          Length = 2690

 Score =  110 bits (274), Expect = 1e-23
 Identities = 99/250 (39%), Positives = 117/250 (46%), Gaps = 14/250 (5%)
 Frame = -1

Query: 709  SPVSKPETVSLAVPSTASQKVNEPLASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 530
            S V KPET S A P TA++  NE L S                                S
Sbjct: 1794 SSVGKPETGSPAAPFTATETGNETLVS---------EPTPVTAVTVATPVILTASEVPRS 1844

Query: 529  DIASTVTSVPATSLATTPDVGTPKTPVSDPV------SSETATPAVTVPSGSLSVSPNPE 368
            DIAS    V + ++A   DVGT + PVS  V      SS+TATP VTVP  SL VSP+  
Sbjct: 1845 DIASPRPPVSSVAVADV-DVGTTQMPVSGSVGSQPSVSSQTATP-VTVPVSSLPVSPDST 1902

Query: 367  LKPGRGRGKKSQSGTXXXXXXXXXXXD-----TVDAQEPNSNEPAQKKTRVSSGRKPVAT 203
             K GRGRG+K QSG                  TVD Q+  SNEPAQK+TR SSGRK VAT
Sbjct: 1903 SKKGRGRGRKDQSGVDPQPQPPRRRERRKKDDTVDVQDQKSNEPAQKRTRASSGRKTVAT 1962

Query: 202  RRTLRSEAQKNNQDSKLAEP---SSLHVKENTSTLADVNXXXXXXXXXXXXXXXSIHGEK 32
            R   R      NQ S++AEP   SS  V+E +S L +V+               S   EK
Sbjct: 1963 RSMAR------NQASEIAEPLPKSSSKVREKSSILVEVDTLSKSVGASRVDDSISTRKEK 2016

Query: 31   VAGPKDSSLA 2
            V  PKD  +A
Sbjct: 2017 VE-PKDVLVA 2025


>ref|XP_023760747.1| chromatin structure-remodeling complex protein SYD [Lactuca sativa]
 gb|PLY87790.1| hypothetical protein LSAT_8X137440 [Lactuca sativa]
          Length = 2421

 Score = 95.9 bits (237), Expect = 1e-18
 Identities = 74/190 (38%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
 Frame = -1

Query: 523  ASTVTSVPATSLATTPDVGTP--KTPVSDPVSSETATPAVTVPSGSLSVSPNPEL-KPGR 353
            A+T   +P+ +  +TP   TP   TPV+ P S+  ATP V  P  + + SP+    K GR
Sbjct: 1974 AATPVGIPSATPVSTP-AATPLVATPVATPASTPVATPLVDTPVATPTESPSESAPKQGR 2032

Query: 352  GRGKKSQSGTXXXXXXXXXXXDTVDAQEPNSNEPAQKKTRVSSGRKPVATRRTLRSEAQK 173
            GRG+K QS             DTV+AQE   NEP QK+TR SS RK VATR  LR+EAQK
Sbjct: 2033 GRGRKVQSRPEAPRRRERRKLDTVEAQEQKPNEPPQKRTRASSSRKTVATRSMLRNEAQK 2092

Query: 172  ----------NNQDSKLAE---PSSLHVKENTSTLADVNXXXXXXXXXXXXXXXSIHGEK 32
                          SKLAE     S  VK+ +S +AD                 ++HGEK
Sbjct: 2093 MMDMDDDDQSTQAASKLAETPLKDSPDVKQQSSNVADT---------------INLHGEK 2137

Query: 31   VAGPKDSSLA 2
            +   KD S A
Sbjct: 2138 IEKQKDISEA 2147


Top