BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00012948
         (1386 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     481   e-154
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   452   e-143
gb|OTG07182.1| putative zinc finger, CCHC-type [Helianthus annuus]    447   e-141
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   444   e-141
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   436   e-140
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   422   e-130
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     401   e-126
gb|KZV20448.1| retrovirus-related Pol polyprotein from transposo...   381   e-125
gb|AMY96445.1| gag/pol protein [Momordica dioica]                     403   e-125
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   395   e-123
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   390   e-123
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         383   e-121
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   374   e-119
gb|PNX79482.1| putative retrotransposon Ty1-copia subclass prote...   367   e-118
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   380   e-117
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     372   e-114
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   360   e-114
gb|KZV22848.1| hypothetical protein F511_19440 [Dorcoceras hygro...   359   e-114
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo...   357   e-113
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   369   e-112

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  481 bits (1237), Expect = e-154
 Identities = 246/456 (53%), Positives = 310/456 (67%), Gaps = 1/456 (0%)
 Frame = +1

Query: 16   GERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDIGFVHT 195
            GE  L VGNG   A  A+GT  L LPSGL+LELNNC+  P++ + VIS S L+  G+   
Sbjct: 328  GEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFR 387

Query: 196  FTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXXYLWHC 375
              + G S+ L ++FYF+A  + G++ ++++                         ++WHC
Sbjct: 388  SMNNGCSIYLRDMFYFHAPLVNGLYVLNLEAS-----PIYNINTERQLSNDINPTFIWHC 442

Query: 376  RLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGLIHTD 555
            RL HI KKRMEKL  DGLL + + ESF+ CESC+ GKMT+ PF+   ERASDLL L+HTD
Sbjct: 443  RLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTD 502

Query: 556  VCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKKIKAL 735
            VCGP+   ++ G  YF+TFTDDFSRYGY+YL++HK E FE FK F++EV+  LGK IK L
Sbjct: 503  VCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFL 562

Query: 736  RSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELTTLPF 915
            RSDRGGEY+SQEF ++L +CGIV QLT P TPQ NGVSERRNRTLLDMVRSM   + LP 
Sbjct: 563  RSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPL 622

Query: 916  TFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDKLQAR 1095
            +FW YALETA   LN VP+K V KTPYEIWTG+ P+ S+LK+WGCEA+VKR   DKL  +
Sbjct: 623  SFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPK 682

Query: 1096 SVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQEDTTP 1275
            S KC  VGYPKET GYYFY   + KVFVAR+G FLE+  +S+ +SG    LE  QE    
Sbjct: 683  SDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPET 742

Query: 1276 SETTSQLQEEPESLGAPPEVVPI-RRSERTIRAPDR 1380
               T++ Q+E +S+  P    P  RRSER+ RAPDR
Sbjct: 743  VSATTEPQQEDQSVAPPVVDTPAPRRSERSRRAPDR 778


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  452 bits (1163), Expect = e-143
 Identities = 241/459 (52%), Positives = 299/459 (65%), Gaps = 5/459 (1%)
 Frame = +1

Query: 16   GERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDIGFVHT 195
            G   L +GN + + V  IG + LVL S + +EL NC Y+P + R +IS   L   GF  +
Sbjct: 301  GRLNLIMGNRRSSPVTKIGVYSLVLSSDVSIELFNCCYSPEMARNIISFHALFRQGFHFS 360

Query: 196  FTDY--GISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXXYLW 369
            F +    ISV  N +  F A P  GV+E     C+ N                     LW
Sbjct: 361  FDNNIGSISVFKNGILNFTAYPCDGVYETVE--CVDN---LGHSVNYIDSTSGVEKACLW 415

Query: 370  HCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGLIH 549
            H RL HI KKR+ +LQ DG+L++ + +S D CESC+ GKMT+ PF    ER   LL +IH
Sbjct: 416  HSRLGHISKKRIAQLQKDGVLESFDLKSDDVCESCLLGKMTKSPFKGSFERGEGLLDIIH 475

Query: 550  TDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKKIK 729
            TDVCGP R  +K G  +++TFTDDFSRYGY+YL+KHK + FE FK FK+EVE QLG+KIK
Sbjct: 476  TDVCGPFRSTTKDGTRFYVTFTDDFSRYGYIYLIKHKSDTFEKFKEFKNEVENQLGRKIK 535

Query: 730  ALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELTTL 909
             LRSDRGGEY+S EF DYL ECGIV QLT P TPQ NGV+ERRNRTLLDMVRSM    +L
Sbjct: 536  MLRSDRGGEYLSIEFLDYLKECGIVSQLTPPRTPQLNGVAERRNRTLLDMVRSMMSRASL 595

Query: 910  PFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDKLQ 1089
            P  FW YALETA  ILN+VPTKKV KTP+E+WTGK P+ +++KVWGCEAFV+R+T DKL 
Sbjct: 596  PIHFWGYALETAAHILNLVPTKKVAKTPHEMWTGKVPSLAHIKVWGCEAFVRRETQDKLA 655

Query: 1090 ARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQE-- 1263
             RS +C F+GYPK++ GY FY P+E+ VFVAR   F ER LI +E SG   DLE  QE  
Sbjct: 656  ERSERCFFLGYPKQSFGYLFYRPSEDVVFVARRAVFRERELIFKEDSGSTIDLEEIQESS 715

Query: 1264 -DTTPSETTSQLQEEPESLGAPPEVVPIRRSERTIRAPD 1377
             D T  ET++Q  EE   +G     +P+RRS R    P+
Sbjct: 716  DDATLGETSNQ-HEEEVPVGPTDVSLPLRRSGRVSMPPE 753


>gb|OTG07182.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1325

 Score =  447 bits (1150), Expect = e-141
 Identities = 237/463 (51%), Positives = 302/463 (65%), Gaps = 3/463 (0%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            KKL  G+  L VG+GKR  V A GTF+L  PSGLI+ LNNC YAP + R +ISVSLL + 
Sbjct: 328  KKLKPGDMELIVGDGKRVPVLATGTFNLTCPSGLIVVLNNCLYAPGLTRNIISVSLLYEQ 387

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            GF + F    IS  LN ++YF A    G++EI++      +                   
Sbjct: 388  GFRYVFNGIAISAYLNGIYYFEAKSRNGIYEINV------QPSSNIYHLSKCQKNGTSDS 441

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            +LWHCRL HI K R++ LQ +G+L++   +SFD CESC+AGK+T+ PF+   ERASDLLG
Sbjct: 442  FLWHCRLGHISKARVKWLQSEGILESTGTDSFDDCESCLAGKLTKDPFTHVGERASDLLG 501

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            LIH+DVCGP R +++    YF+TF DD+SRY YVYL+KHKHE FE FK F++EVE QL +
Sbjct: 502  LIHSDVCGPFRTMTRNHERYFVTFIDDYSRYAYVYLMKHKHETFEKFKEFQNEVENQLNR 561

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
            KIK LRSDRGGEY+S EF D+L E GIV Q T P TPQ NGV ERRNRTLL+M+RSM   
Sbjct: 562  KIKMLRSDRGGEYLSLEFLDHLKERGIVSQPTPPGTPQLNGVCERRNRTLLNMIRSMMCR 621

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T LP +FW YAL TA R++N+ PTKKV KTPYEIW G  PN SYL+VWGC+A++  D+ D
Sbjct: 622  TNLPHSFWGYALMTAARLVNLAPTKKVNKTPYEIWHGHKPNLSYLRVWGCDAYITSDSDD 681

Query: 1081 KLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGD-FLERNLISQELSGRVYDLEYD 1257
            KL  R  K +FVGY  +  GYYFY+P  N + + R    FLE  L+S+     + DLE  
Sbjct: 682  KLDPRGEKVVFVGYYNQ-CGYYFYHPDANTISIKRKAKRFLEDELLSRGTGSNLVDLEEV 740

Query: 1258 Q--EDTTPSETTSQLQEEPESLGAPPEVVPIRRSERTIRAPDR 1380
            Q  + T     TS+ Q+  ++   P     +RRS RT + PDR
Sbjct: 741  QGLQATVDEVGTSEPQQIVDTESDPN--TSLRRSIRTRKEPDR 781


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
 gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  444 bits (1142), Expect = e-141
 Identities = 225/408 (55%), Positives = 278/408 (68%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            + L  GE  + VGNG R A  A+GT  L LPS L+LELNN +  P++ + VIS S L+  
Sbjct: 299  RSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAE 358

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            G+     D   SV  N++FYF+A  + G++ ++++G                        
Sbjct: 359  GYGFRSVDNDCSVYYNDIFYFHAPMMSGLYIVNLNG-----YSVYNINAKRQRPNDLNPT 413

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHCRL HI +KRMEK+  DGLL + + ESF+ CESC+ GKMT+ PF+ Q ERAS+LL 
Sbjct: 414  FIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLA 473

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            L+HTDVCGP+   ++ G  YF TFTDDFSRYGYVYL++HK E FE FK F +EV+  LGK
Sbjct: 474  LVHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGK 533

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK LRSDRGGEY+S EF ++L ECGIV QLT P TPQ NGVSE RNRTLLDMVRSM   
Sbjct: 534  TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQ 593

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T L  +FW YALET    LN VP+K V KTPYEIWTGK P+ S+LK+WGCE +VKR   D
Sbjct: 594  TNLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 653

Query: 1081 KLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQE 1224
            KL  +S KC FVGYPKET GYYFY   E KVFVAR+G FLE+  IS++
Sbjct: 654  KLTPKSDKCFFVGYPKETKGYYFYNQEEGKVFVARHGVFLEKEFISRK 701


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana]
 emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  436 bits (1120), Expect = e-140
 Identities = 230/432 (53%), Positives = 284/432 (65%), Gaps = 5/432 (1%)
 Frame = +1

Query: 100  LILELNNCHYAPSIVRGVISVSLLKDIGFVHTFTDYGISVSLNNVFYFNAIPILGVFEID 279
            ++LEL NC+Y P+I + +ISVS L   GF  +  +   S   +++FY +A    G+  ++
Sbjct: 1    MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60

Query: 280  MDGCISNEXXXXXXXXXXXXXXXXXXXYLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFD 459
                I N                    +LWHCRL HI +K ++KL  DGLL + + ES++
Sbjct: 61   QSMPIYN------IRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYE 114

Query: 460  KCESCIAGKMTRKPFSPQVERASDLLGLIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGY 639
             CESC+ GKMT+ PF+   ERASDLLGLIHTDVCGP+   ++    YF+TFTDDFSRYGY
Sbjct: 115  TCESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGY 174

Query: 640  VYLLKHKHEVFETFKVFKSEVELQLGKKIKALRSDRGGEYISQEFKDYLAECGIVQQLTS 819
            VYL+KHK + FE FK F++EV+ Q GK IKALRSDRGGEY+SQ F D+L ECGIV QLT 
Sbjct: 175  VYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTP 234

Query: 820  PYTPQQNGVSERRNRTLLDMVRSMFELTTLPFTFWDYALETAIRILNMVPTKKVVKTPYE 999
            P TPQ NGVSERRNRTLLDMVRSM   T LP  FW YALET+  +LN  P+K V KTPYE
Sbjct: 235  PGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYE 294

Query: 1000 IWTGKAPNFSYLKVWGCEAFVKRDTPDKLQARSVKCIFVGYPKETMGYYFYYPAENKVFV 1179
            IWTGK PN S+LK+WGCE++ KR   DKL  +S KC FVGYPKET GYYFY+P +NKVFV
Sbjct: 295  IWTGKVPNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFV 354

Query: 1180 ARYGDFLERNLISQELSGRVYDLEYDQE-----DTTPSETTSQLQEEPESLGAPPEVVPI 1344
             R G FLER  +S+  SG    LE  +E      T+  E    L+   E +   PEV   
Sbjct: 355  VRNGAFLEREFLSKGTSGSKVLLEEVREPQGDVPTSQEEHQLDLRRVVEPILVEPEV--- 411

Query: 1345 RRSERTIRAPDR 1380
            RRSER+   PDR
Sbjct: 412  RRSERSRHEPDR 423


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  422 bits (1084), Expect = e-130
 Identities = 220/424 (51%), Positives = 279/424 (65%), Gaps = 9/424 (2%)
 Frame = +1

Query: 136  SIVRGVISVSLLKDIGFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXX 315
            ++ + VIS S L+  G+     D G SV  N++FYF+A  + G++ +++DGC        
Sbjct: 844  ALCKNVISASCLQAEGYGFRSVDNGCSVYYNDIFYFHAPMMSGLYIVNLDGC-----SIY 898

Query: 316  XXXXXXXXXXXXXXXYLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTR 495
                           ++WHCRL HI +KRMEKL  DGLL +++ ESF+ CESC+ GKMT+
Sbjct: 899  NINAKRQGPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTK 958

Query: 496  KPFSPQVERASDLLGLIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFE 675
             PF+ Q ER S+LL L+HTDVCGP+   ++ G  YF+TFTDDFSRYGYVYL++HK E FE
Sbjct: 959  APFTGQSERTSELLVLVHTDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFE 1018

Query: 676  TFKVFKSEVELQLGKKIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSER 855
             FK F++EV+  L K IK LRSD GGEY+S EF ++L  CGIV QLT P TPQ NGVSER
Sbjct: 1019 KFKEFQNEVQNHLRKTIKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSER 1078

Query: 856  RNRTLLDMVRSMFELTTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYL 1035
            RNRTLL+MVRSM   T L  +FW YALETA   LN VP+K V KTPYEIWTGK P+ S+L
Sbjct: 1079 RNRTLLNMVRSMMSQTNLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFL 1138

Query: 1036 KVWGCEAFVKRDTPDKLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLI 1215
            K+WGCE +VKR   DKL  +S KC FVGYPKET GYY Y   E KVFVAR+G FL++  I
Sbjct: 1139 KIWGCEVYVKRLQSDKLTPKSNKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFI 1198

Query: 1216 SQELSGRVYDLEYDQEDTTPSETTSQLQEEPESLGAPPEVVPI---------RRSERTIR 1368
            S++ SG +  LE  QE    + T++Q Q+  + +    E V +         RRSER  R
Sbjct: 1199 SRKDSGSIVRLEEIQETPENASTSTQPQQAEQDVVQQVEQVVVEPVVEAPASRRSERIRR 1258

Query: 1369 APDR 1380
             P R
Sbjct: 1259 TPAR 1262


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  401 bits (1030), Expect = e-126
 Identities = 211/411 (51%), Positives = 263/411 (63%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            + L  GE  + VGNG R A  A+GT  L LPSG++LELNNC+   ++ + VIS S L+  
Sbjct: 302  RSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVISASCLQAE 361

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            G+     D G SV  N++FYF+   + G++ +++DGC                       
Sbjct: 362  GYGFRSVDNGCSVYYNDIFYFHVPMMNGLYIVNLDGC-----SVYNINAKRQCPNYLNPT 416

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHCRL HI +KRMEKL  DGLL + + ESF   ESC+ GKMT+ PF+ Q ERAS+LLG
Sbjct: 417  FIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLG 476

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            L+HTDVCGP+   ++ G  YF+TFTDDFS+YGYVYL++HK E FE FK F++EV+  LGK
Sbjct: 477  LVHTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGK 536

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK LRSDRGGEY+S EF ++  ECGIV QLT P TPQ N VSERRNRTLLDMVRSM   
Sbjct: 537  TIKYLRSDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQ 596

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T LP +F  YALET    LN VP+K V KTPYEIWTG  P+ S+LK+WG E         
Sbjct: 597  TNLPLSFSGYALETTAFTLNWVPSKSVDKTPYEIWTGNRPSLSFLKIWGYE--------- 647

Query: 1081 KLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSG 1233
                            ET GYYFY   E KVFVAR+G FLE+  IS++ SG
Sbjct: 648  ----------------ETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSG 682


>gb|KZV20448.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Dorcoceras hygrometricum]
          Length = 444

 Score =  381 bits (979), Expect = e-125
 Identities = 191/339 (56%), Positives = 235/339 (69%)
 Frame = +1

Query: 364  LWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGL 543
            LWH RL H+   RM KL    L    +  S   CESC+ GK+T+ PF  + ERA DLL L
Sbjct: 1    LWHARLGHVSLSRMNKLVRSDLFDLSDINSLPTCESCLKGKITKHPFKGKGERAQDLLDL 60

Query: 544  IHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKK 723
            IHTDVCG     +K G  YF+TFTDD+SRYGY+YL+K+K E FE FK FK++VE QLGK 
Sbjct: 61   IHTDVCGLFSIGTKYGHTYFITFTDDYSRYGYLYLMKYKSESFERFKEFKAKVENQLGKS 120

Query: 724  IKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELT 903
            IKALRSDRGGEY+S EF+DYL E GI+ Q T P TPQ NGV+ERRNRT  DMVRSM   T
Sbjct: 121  IKALRSDRGGEYLSAEFQDYLRENGILSQWTPPATPQLNGVAERRNRTFFDMVRSMMSFT 180

Query: 904  TLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDK 1083
             LP +FW YALETA+ +LN V TK V KTPYEIW GK P +S++++WGC A+VK+   DK
Sbjct: 181  ELPTSFWGYALETAVMLLNNVHTKAVDKTPYEIWMGKPPKYSFMRIWGCPAYVKQTVGDK 240

Query: 1084 LQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQE 1263
            L  RS+ C F+GYPK ++GYYFYYP+E KVFV+R   F+ER L+  +  GR+ +LE  +E
Sbjct: 241  LDTRSILCYFIGYPKNSIGYYFYYPSETKVFVSRNATFMERELL-LDRKGRIVELEEVRE 299

Query: 1264 DTTPSETTSQLQEEPESLGAPPEVVPIRRSERTIRAPDR 1380
               P+E  S   E P      P++V  RRSER  RAP+R
Sbjct: 300  ---PTEVPS---ESPAPTEPVPDMVAPRRSERIPRAPER 332


>gb|AMY96445.1| gag/pol protein [Momordica dioica]
          Length = 1313

 Score =  403 bits (1035), Expect = e-125
 Identities = 223/482 (46%), Positives = 290/482 (60%), Gaps = 22/482 (4%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            ++L  GE  + VGNG +   EA+G   L      ++ LNNC+  P + R +IS++ + + 
Sbjct: 328  RRLKEGEITMRVGNGSKVDAEAVGDLTLFFQDRYVMNLNNCYLVPLMKRNLISIACILE- 386

Query: 181  GFVHTFTDYGISVSLNNVFYF-------NAIPILGVFEI--DMDGCISNEXXXXXXXXXX 333
               H +T   IS  +N VF         +A  + G +++       + N           
Sbjct: 387  ---HIYT---ISFEVNEVFILCKGIQICHAPIVRGFYKLRPTRANVVLNTTHIHNLETQN 440

Query: 334  XXXXXXXXXYLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQ 513
                     YLWH RL HI   R+EKL  DGLL+ + D S   CESC+ GKMT++PF+ +
Sbjct: 441  KKQNNDSAMYLWHLRLGHINLNRIEKLHKDGLLEQLEDFSLPPCESCLEGKMTKRPFTGK 500

Query: 514  VERASDLLGLIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFK 693
              RASDLL LIHTDVCGP+   ++ G  YFL+FTDD SRYGYVYLLKHK E FE FK F+
Sbjct: 501  GLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYVYLLKHKSESFEKFKEFQ 560

Query: 694  SEVELQLGKKIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLL 873
            +EVE ++GKKIK LRSDRGGEY+S EF D+L E GIV QL++P TPQ NGVSERRNRTLL
Sbjct: 561  AEVENEIGKKIKTLRSDRGGEYMSSEFGDHLREFGIVSQLSAPGTPQCNGVSERRNRTLL 620

Query: 874  DMVRSMFELTTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCE 1053
            DMVRSM     LP +FW YA E    ILN VP+K V +TPYE+W G+  + S+LK+WGC 
Sbjct: 621  DMVRSMMSYADLPDSFWGYARERERAILNRVPSKSVEETPYELWYGRKSSLSFLKIWGCP 680

Query: 1054 AFVKRDTPDKLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSG 1233
            A VK+  P KL+ RS KC+FVGYPKET GYYFY+P ENKVFVA    FLE+  +S+   G
Sbjct: 681  AHVKKLQPKKLEPRSEKCLFVGYPKETRGYYFYHPQENKVFVATNEAFLEKEFLSRHQPG 740

Query: 1234 RVYDLEYDQEDTTPSETT-------------SQLQEEPESLGAPPEVVPIRRSERTIRAP 1374
                L+   E   P + T             +++ ++        E+   RRS R+ RAP
Sbjct: 741  SKIVLKAVVEPLIPLDGTDKPSSSTKVVVDKAEVNDDQSHTPDQQELRVPRRSGRSRRAP 800

Query: 1375 DR 1380
            +R
Sbjct: 801  NR 802


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  395 bits (1016), Expect = e-123
 Identities = 202/379 (53%), Positives = 253/379 (66%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            + L  GE  + VGNG R A  A+GT  L LPSG++LELNNC+   ++ + VIS S L+  
Sbjct: 375  RSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVISASCLQAE 434

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            G+     D G SV  N++FYF+   + G++ +++DGC                       
Sbjct: 435  GYGFRSVDNGCSVYYNDIFYFHVPMMNGLYIVNLDGC-----SVYNINAKRQCPNYLNPT 489

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHCRL HI +KRMEKL  DGLL + + ESF   ESC+ GKMT+ PF+ Q ERAS+LLG
Sbjct: 490  FIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLG 549

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            L+HTDVCGP+   ++ G  YF+TFTDDFS+YGYVYL++HK E FE FK F++EV+  LGK
Sbjct: 550  LVHTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGK 609

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK LRSDRGGEY+S EF ++  ECGIV QLT P TPQ N VSERRNRTLLDMVRSM   
Sbjct: 610  TIKYLRSDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQ 669

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T LP +F  YALET    LN VP+K V KTPYEIWTG  P+ S+LK+WG E +VKR   D
Sbjct: 670  TNLPLSFSGYALETTAFTLNWVPSKSVDKTPYEIWTGNRPSLSFLKIWGYEVYVKRLQSD 729

Query: 1081 KLQARSVKCIFVGYPKETM 1137
            KL  +S KC FVG  K  +
Sbjct: 730  KLTPKSDKCFFVGLWKHRL 748


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA93176.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 938

 Score =  390 bits (1002), Expect = e-123
 Identities = 192/351 (54%), Positives = 244/351 (69%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            + L  GE  ++VGNG      A+GT  L LPSGL+LELNNC+   ++ + VIS S L+  
Sbjct: 208  RNLARGEVDIHVGNGASVVAVAVGTMPLSLPSGLVLELNNCYCILALCKNVISASCLQAE 267

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            G+     D G SV  N++FYF+A  + G++ +++DGC                       
Sbjct: 268  GYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQRPNDLNPT 322

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHCRL HI ++RMEKL  DGLL + + ESF+ CESC+ GKMT+ PF+ Q E+AS+LLG
Sbjct: 323  FIWHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLG 382

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            L+HTDVCGP+   ++ G  YF+TFT+DFSRYGYVYL++HK + FE FK F++EV+  LGK
Sbjct: 383  LVHTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGK 442

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK LRSDRGGEY+S EF ++L ECGIV QLT P TPQ NGVSERRNRTLLDMVRSM   
Sbjct: 443  TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQ 502

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCE 1053
            T LP +FW Y LETA   LN VP+K V KTPYEIWTGK P+ S+LK+WGCE
Sbjct: 503  TDLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCE 553


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  383 bits (983), Expect = e-121
 Identities = 190/317 (59%), Positives = 230/317 (72%)
 Frame = +1

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHCRL HI +KRMEKL  DGLL + + ESF+  E C+ GKMT+ PF+ Q ER+S+LLG
Sbjct: 232  FIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETYEFCLLGKMTKAPFTGQSERSSELLG 291

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            L+H DVC P+   ++ G  YF+TFTDDFSRY YVYL++HK E FE FK F++EV+  LGK
Sbjct: 292  LVHIDVCEPMSSTARGGFGYFITFTDDFSRYVYVYLMRHKSESFEKFKEFQNEVQNHLGK 351

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK LRSDRGGEY+S EF ++L ECGIV QLT P TPQ N VSERRNRTLLDMV+SM   
Sbjct: 352  TIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNRVSERRNRTLLDMVQSMMSQ 411

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T LP  FW YALETA   LN VP+K V KT YEIWTGK P+ S+LK+WGCE +VKR   D
Sbjct: 412  TDLPLCFWGYALETAAFTLNRVPSKSVDKTSYEIWTGKRPSLSFLKIWGCEVYVKRLQSD 471

Query: 1081 KLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQ 1260
            KL  +S KC FVGYPKET GYYFY   E KVFVAR+  FLE+  IS++ SG +   E  Q
Sbjct: 472  KLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFLEKEFISRKDSGSMVRPEEIQ 531

Query: 1261 EDTTPSETTSQLQEEPE 1311
            E    + T++Q Q E +
Sbjct: 532  ETPENASTSTQPQAEQD 548


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  374 bits (961), Expect = e-119
 Identities = 191/330 (57%), Positives = 233/330 (70%), Gaps = 4/330 (1%)
 Frame = +1

Query: 403  MEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGLIHTDVCGPLRHVS 582
            MEKL  DGLL + + ESF+ CESC+ GK+T+ PF+ Q ERAS+LL L+HTDVCGP+   +
Sbjct: 1    MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 583  KRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKKIKALRSDRGGEYI 762
            + G  YF+ FTDDFSRYGYVYL++HK E FE FK F +EV+  L K IK LRSDRGGEY 
Sbjct: 61   RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 763  SQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELTTLPFTFWDYALET 942
            S EF ++L ECGIV QLT P TPQ NGVS+RRNRTLLDMVRSM   T LP +FW YALET
Sbjct: 121  SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180

Query: 943  AIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDKL--QARSVKCIFV 1116
            A+  +N VP+K + KTPYEIWTGK P+ S+LK+WGCE +VKR   DKL  +++S KC FV
Sbjct: 181  AVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSDKCFFV 240

Query: 1117 GYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQEDTTPSETTSQL 1296
            GYPKET GYYFY   E KVFVAR+G FLE+  IS++ SG +   E     T P +    +
Sbjct: 241  GYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSGSMETPENASTSTQPQQAEQDV 300

Query: 1297 QEEPESLGAPP--EVVPIRRSERTIRAPDR 1380
             ++ E +   P  E    RRSER  R P R
Sbjct: 301  VQQVEQVVVEPVVEAPASRRSERIRRTPAR 330


>gb|PNX79482.1| putative retrotransposon Ty1-copia subclass protein, partial
            [Trifolium pratense]
          Length = 620

 Score =  367 bits (943), Expect = e-118
 Identities = 177/297 (59%), Positives = 216/297 (72%)
 Frame = +1

Query: 379  LAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGLIHTDV 558
            L HIG+KR+ KL  +G L   + ES++ CESC+ GKMT+ PF    ERAS+LLGL+HTDV
Sbjct: 267  LGHIGEKRINKLHKEGYLDNYDYESYETCESCLKGKMTKSPFIGIGERASELLGLVHTDV 326

Query: 559  CGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKKIKALR 738
            CGP++  +K G  YF+TFTDD SRYG++YL+KHK E FE FK F+SEVE Q GK IK LR
Sbjct: 327  CGPMKIQAKGGYSYFITFTDDKSRYGFLYLMKHKSESFEMFKRFRSEVEKQTGKNIKMLR 386

Query: 739  SDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELTTLPFT 918
            SDRGGEY+S  F  YL + GI  Q T P TPQ NGVSERRNRTLLDMVRSM   T LP  
Sbjct: 387  SDRGGEYLSDNFIGYLKDNGIXSQWTPPGTPQHNGVSERRNRTLLDMVRSMMGFTDLPIN 446

Query: 919  FWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDKLQARS 1098
             W YALE A  +LN VP+K V  TPYEIW G+ PN  ++++WGC A+VKR   DKL ARS
Sbjct: 447  LWGYALEAAAYLLNKVPSKSVPTTPYEIWKGRKPNLKHIRIWGCPAYVKRLQTDKLDARS 506

Query: 1099 VKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQEDT 1269
             +C F+GYPKETMGYYFY P+++KVFVAR G FLER  ++    G+  +L+ DQE +
Sbjct: 507  SRCRFIGYPKETMGYYFYQPSDHKVFVARGGTFLERXFLADGSHGKQIELDEDQESS 563


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  380 bits (976), Expect = e-117
 Identities = 207/423 (48%), Positives = 264/423 (62%), Gaps = 8/423 (1%)
 Frame = +1

Query: 136  SIVRGVISVSLLKDIGFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXX 315
            S+   VIS S L+  G+     D G SV  N++FYF+A  + G++ +++DGC        
Sbjct: 333  SLCNNVISTSCLQAEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGC-----SVY 387

Query: 316  XXXXXXXXXXXXXXXYLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTR 495
                           ++WHC L HI +KR+EKL  DGLL + + ESF  CESC+ GKMT+
Sbjct: 388  NINAKRQRPNNLNPTFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTK 447

Query: 496  KPFSPQVERASDLLGLIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFE 675
             PF+ Q ERAS+LLGL+HTDVCGP+   ++ G  YF+TFTD+FSRYGYVYL++HK E FE
Sbjct: 448  APFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFE 507

Query: 676  TFKVFKSEVELQLGKKIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSER 855
             F+ F++EV+  LGK IK LRSDRGGEY+S E+ ++L ECGIV QLT P TPQ N VSER
Sbjct: 508  KFQEFQNEVQNHLGKTIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSER 567

Query: 856  RNRTLLDMVRSMFELTTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYL 1035
            RNR LLDMVRSM   T +P +FW YALETA   LN VP+K V KTPYEIWTGK P+ S+L
Sbjct: 568  RNRILLDMVRSMMSQTDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFL 627

Query: 1036 KVWGCEAFVKRDTPDKLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLI 1215
            K+W CE                         ET GYYFY   E KVFVAR+G FLE+  I
Sbjct: 628  KIWCCE-------------------------ETKGYYFYNREEGKVFVARHGVFLEKEFI 662

Query: 1216 SQELSGRVYDLEYDQEDTTPSETTSQLQEEPESLGAPPEVV--PI------RRSERTIRA 1371
            S++ SG +  L+  QE    + T++Q Q E + +    +VV  P+      RRSER  R 
Sbjct: 663  SRKDSGSMVRLKEIQETPENASTSTQPQVEQDVVQQVEQVVVEPVVEAPASRRSERIRRT 722

Query: 1372 PDR 1380
            P R
Sbjct: 723  PAR 725


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  372 bits (956), Expect = e-114
 Identities = 201/408 (49%), Positives = 256/408 (62%), Gaps = 8/408 (1%)
 Frame = +1

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            G+     D G SV  N++FYF+A  + G++ +++DGC                       
Sbjct: 261  GYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGC-----SVYNINAKRQRPNNLNPT 315

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHC L HI +KR+EKL  DGLL + + ESF  CESC+ GKMT+ PF+ Q ERAS+LLG
Sbjct: 316  FIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLG 375

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            L+HTDVCGP+   ++ G  YF+TFTD+FSRYGYVYL++HK E FE F+ F++EV+  LGK
Sbjct: 376  LVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGK 435

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK LRSDRGGEY+S E+ ++L ECGIV QLT P TPQ N VSERRNR LLDMVRSM   
Sbjct: 436  TIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQ 495

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T +P +FW YALETA   LN VP+K V KTPYEIWTGK P+ S+LK+W CE         
Sbjct: 496  TDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE--------- 546

Query: 1081 KLQARSVKCIFVGYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQ 1260
                            ET GYYFY   E KVFVAR+G FLE+  IS++ SG +  L+  Q
Sbjct: 547  ----------------ETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQ 590

Query: 1261 EDTTPSETTSQLQEEPESLGAPPEVV--PI------RRSERTIRAPDR 1380
            E    + T++Q Q E + +    +VV  P+      RRSER  R P R
Sbjct: 591  ETPENASTSTQPQVEQDVVQQVEQVVVEPVVEAPASRRSERIRRTPAR 638


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 655

 Score =  360 bits (923), Expect = e-114
 Identities = 177/279 (63%), Positives = 213/279 (76%), Gaps = 2/279 (0%)
 Frame = +1

Query: 403  MEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGLIHTDVCGPLRHVS 582
            MEKL  DGLL + + ESF+ CESC+ GK+T+ PF+ Q ERAS+LL L+HTDVCGP+   +
Sbjct: 1    MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60

Query: 583  KRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKKIKALRSDRGGEYI 762
            + G  YF+ FTDDFSRYGYVYL++HK E FE FK F +EV+  L K IK LRSDRGGEY 
Sbjct: 61   RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120

Query: 763  SQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELTTLPFTFWDYALET 942
            S EF ++L ECGIV QLT P TPQ NGVS+RRNRTLLDMVRSM   T LP +FW YALET
Sbjct: 121  SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180

Query: 943  AIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDKL--QARSVKCIFV 1116
            A+  +N VP+K + KTPYEIWTGK P+ S+LK+WGCE +VKR   DKL  +++S KC FV
Sbjct: 181  AVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSDKCFFV 240

Query: 1117 GYPKETMGYYFYYPAENKVFVARYGDFLERNLISQELSG 1233
            GYPKET GYYFY   E KVFVAR+G FLE+  IS++ SG
Sbjct: 241  GYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSG 279


>gb|KZV22848.1| hypothetical protein F511_19440 [Dorcoceras hygrometricum]
          Length = 672

 Score =  359 bits (922), Expect = e-114
 Identities = 181/327 (55%), Positives = 227/327 (69%), Gaps = 1/327 (0%)
 Frame = +1

Query: 403  MEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLGLIHTDVCGPLRHVS 582
            M+K+    +    +  S   CESC+ GKMT++PF  + ERA  LL LIHTDVCGP    +
Sbjct: 1    MKKIVRSDMFDLSDINSLPTCESCLKGKMTKQPFKGKGERAQSLLDLIHTDVCGPFSIGT 60

Query: 583  KRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGKKIKALRSDRGGEYI 762
            K G  YF+TFTDD+SRYGY+YL+KHK E FE FK FK+EVE QLGK IKALRSDRGGEY+
Sbjct: 61   KYGHTYFITFTDDYSRYGYLYLMKHKSESFERFKEFKAEVENQLGKSIKALRSDRGGEYL 120

Query: 763  SQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFELTTLPFTFWDYALET 942
            S EF+ YL E GI+ Q T P TPQ NGV+E RNRTL+DMVRSM   T LP +FW YALET
Sbjct: 121  SAEFQHYLKENGILAQWTLPATPQLNGVAEHRNRTLMDMVRSMMSFTELPTSFWGYALET 180

Query: 943  AIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPDKLQARSVKCIFVGY 1122
            A+ +LN V TK V KTPYE+W GK P +SY+++WGC A+VK+   DKL  RS+ C FVGY
Sbjct: 181  AVMLLNNVHTKAVDKTPYEMWMGKPPKYSYMRIWGCPAYVKQTVGDKLDTRSILCYFVGY 240

Query: 1123 PKETMGYYFYYPAENKVFVARYGDFLERNLISQELSGRVYDLEYDQEDT-TPSETTSQLQ 1299
            PK ++GY FYYP+E KVFV+R   F+E   +  +  G++ +LE  +E T  PSE+ +  +
Sbjct: 241  PKNSIGYCFYYPSETKVFVSRNATFMEMEFL-LDRKGKIVELEEVREPTEVPSESLAPTE 299

Query: 1300 EEPESLGAPPEVVPIRRSERTIRAPDR 1380
                     PE+V  RRSER  RAP+R
Sbjct: 300  -------PVPEMVAPRRSERVPRAPER 319


>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 656

 Score =  357 bits (915), Expect = e-113
 Identities = 180/383 (46%), Positives = 239/383 (62%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            ++L  GE  L VGNG+  A  A+G+  L++P+G +L L+NC+Y P  V  +IS+S+L   
Sbjct: 247  RRLKKGEVNLQVGNGENVAALALGSVSLIMPTGKVLVLDNCYYIPKFVSNIISISMLDKH 306

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            GF+  F +   S+   +  Y N     G++ +     ++                     
Sbjct: 307  GFLTIFNNNICSIYRGDDLYVNGYLQHGIYVLPD---VNLNPVMHVSNVKRKRDDQVNKT 363

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            YLWHCRL HIG+KR+ KL  +G L   + ES+  CESC+ GKMT+ PF+ + ERAS+LLG
Sbjct: 364  YLWHCRLGHIGEKRINKLHKEGYLDQYDYESYTTCESCLKGKMTKSPFTGKGERASELLG 423

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            LIHTDVCGP++  +K G  YF+TFTDD SRYG+VYL+KHK E FE FK F+SEVE Q GK
Sbjct: 424  LIHTDVCGPMKIQAKGGYSYFITFTDDMSRYGFVYLMKHKSESFEMFKRFRSEVEKQTGK 483

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             +K LRSDRGGEY+S +F D+L E GI+ Q   P TPQ NGVSERRNRTLLDMV+SM   
Sbjct: 484  NVKVLRSDRGGEYLSNDFLDHLKENGILSQWKPPGTPQHNGVSERRNRTLLDMVKSMMGF 543

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLKVWGCEAFVKRDTPD 1080
            T LP   W YALE++  +LN VPTK +  TPYEIW G+ PN  ++KVWGC A ++     
Sbjct: 544  TDLPINLWGYALESSAYLLNKVPTKSLSTTPYEIWKGRKPNLKHIKVWGCHALLRNCKQI 603

Query: 1081 KLQARSVKCIFVGYPKETMGYYF 1149
             L+      + +G  K+     F
Sbjct: 604  NLKQDHKSVVSLGILKKQWDIIF 626


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  369 bits (947), Expect = e-112
 Identities = 185/346 (53%), Positives = 239/346 (69%)
 Frame = +1

Query: 1    KKLTCGERYLYVGNGKRAAVEAIGTFDLVLPSGLILELNNCHYAPSIVRGVISVSLLKDI 180
            +++  GE  L VGN  + A  +  T  LVLPSG I+ELNNC+Y P++ R +IS S L   
Sbjct: 411  RRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISASCLMTE 470

Query: 181  GFVHTFTDYGISVSLNNVFYFNAIPILGVFEIDMDGCISNEXXXXXXXXXXXXXXXXXXX 360
            G+     D+G S+ LN++FY  A  + G+F +++D     +                   
Sbjct: 471  GYKFIIEDHGCSIFLNDMFYGYAPVLNGLFILNLD-----DAPIFNINAKRLRPNNMNST 525

Query: 361  YLWHCRLAHIGKKRMEKLQHDGLLQTVNDESFDKCESCIAGKMTRKPFSPQVERASDLLG 540
            ++WHCRL HI +KRM+KL  DG+L + + ESF+ CESCI GKMT+ PF+ + ERASDLL 
Sbjct: 526  FIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLA 585

Query: 541  LIHTDVCGPLRHVSKRGAVYFLTFTDDFSRYGYVYLLKHKHEVFETFKVFKSEVELQLGK 720
            LIHTDVCGP+   ++ G  YF+TFTDD+SRYGY+YL++HK E FE FK F++EV+ QLGK
Sbjct: 586  LIHTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGK 645

Query: 721  KIKALRSDRGGEYISQEFKDYLAECGIVQQLTSPYTPQQNGVSERRNRTLLDMVRSMFEL 900
             IK+LRSDRGGE++SQEF ++L +CGIV QLT P TPQ NGVSER NRTLLDMVR M   
Sbjct: 646  TIKSLRSDRGGEFLSQEFGNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQ 705

Query: 901  TTLPFTFWDYALETAIRILNMVPTKKVVKTPYEIWTGKAPNFSYLK 1038
            + LP  FW YALETA   LN VP+K V KTPYEIWTGK+P+ S+LK
Sbjct: 706  SDLPLYFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKSPSLSFLK 751