BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00008637
         (557 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OTG07182.1| putative zinc finger, CCHC-type [Helianthus annuus]    230   2e-66
gb|PKI52678.1| hypothetical protein CRG98_026938, partial [Punic...   215   3e-66
gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis D...   229   4e-66
gb|PKI67262.1| hypothetical protein CRG98_012334, partial [Punic...   210   6e-64
gb|PNX64819.1| putative retrotransposon Ty1-copia subclass prote...   200   5e-61
gb|PNX91241.1| putative retrotransposon Ty1-copia subclass prote...   200   6e-61
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     214   8e-61
gb|PNX87842.1| retrotransposon protein putative Ty1-copia subcla...   199   2e-58
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   204   8e-58
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   205   9e-58
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...   203   1e-57
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]         204   1e-57
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   202   3e-57
gb|PKI73800.1| hypothetical protein CRG98_005784 [Punica granatum]    185   5e-57
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   199   6e-57
gb|AMY96445.1| gag/pol protein [Momordica dioica]                     202   6e-57
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   199   1e-56
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     201   2e-56
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   201   2e-56
gb|KYP30896.1| Retrovirus-related Pol polyprotein from transposo...   185   3e-55

>gb|OTG07182.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1325

 Score =  230 bits (586), Expect = 2e-66
 Identities = 111/187 (59%), Positives = 137/187 (73%), Gaps = 2/187 (1%)
 Frame = +1

Query: 1    RAPDRLCLNVEVEE--NMVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEV 174
            + PDR   +VE  E   +    +EP +YK+A+++ +  KW  AM  EM SM+DN VW  V
Sbjct: 777  KEPDRYLWHVEGSEVLTVAESDDEPTSYKSAISNLDSAKWLEAMKAEM-SMRDNQVWDLV 835

Query: 175  DLPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXX 354
            +LPP+++ VGSKW+FK+KTDM GN+ TYKARLVAKGFTQT GIDY+ETFSPV        
Sbjct: 836  ELPPESRAVGSKWVFKRKTDMHGNIQTYKARLVAKGFTQTQGIDYDETFSPVAMIKSIRI 895

Query: 355  XXXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQA 534
                  +YDYEIWQMDVKTAFLNG L ED+YM QP+GF++P +PNRVCKL +SIYGLKQA
Sbjct: 896  LLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPNRVCKLNKSIYGLKQA 955

Query: 535  SRQWNKR 555
            SR WN R
Sbjct: 956  SRSWNLR 962


>gb|PKI52678.1| hypothetical protein CRG98_026938, partial [Punica granatum]
          Length = 331

 Score =  215 bits (547), Expect = 3e-66
 Identities = 102/167 (61%), Positives = 120/167 (71%)
 Frame = +1

Query: 55  DLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTD 234
           D +EP  Y  A+  P+ +KW +AM  EM+SM  N VW  VD P  AK++G KW+FKKKTD
Sbjct: 68  DDDEPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTD 127

Query: 235 MDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTA 414
           MDGNV T+K RLVAKGF Q +G+DY+ETFSPV              +YDYEIWQMDVKTA
Sbjct: 128 MDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTA 187

Query: 415 FLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           FLNG L ED+YM QPEGFV+P    +VCKL+RSIYGLKQASR WN R
Sbjct: 188 FLNGNLLEDVYMTQPEGFVDPHSAEKVCKLQRSIYGLKQASRSWNFR 234


>gb|EXX50149.1| gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
          Length = 1303

 Score =  229 bits (583), Expect = 4e-66
 Identities = 110/172 (63%), Positives = 130/172 (75%)
 Frame = +1

Query: 34   VEENMVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKW 213
            V +  + +L+EPANY+ A+A PE  KW+ AM+ E++SM DN VW  VD  P  K VG KW
Sbjct: 767  VSDRTLINLDEPANYQEAVAGPESAKWKEAMDSEIKSMYDNQVWNLVDNVPGRKTVGCKW 826

Query: 214  IFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIW 393
            IFKKKTDMDG VHT+KARLVAKGFTQT G+DY+ETFSPV               +DYEIW
Sbjct: 827  IFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIW 886

Query: 394  QMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWN 549
            QMDVKTAFLNG+L ED+YM QPEGFV+  +PN+VCKL+RSIYGLKQASR WN
Sbjct: 887  QMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWN 938


>gb|PKI67262.1| hypothetical protein CRG98_012334, partial [Punica granatum]
          Length = 377

 Score =  210 bits (535), Expect = 6e-64
 Identities = 101/167 (60%), Positives = 117/167 (70%)
 Frame = +1

Query: 55  DLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTD 234
           D +EP  Y  A+  P+ +KW  AM  EM+SM  N VW  VD P   K +G KW+FKKKTD
Sbjct: 189 DNDEPTTYAEAVTGPDSEKWLEAMRSEMESMYTNQVWTLVDPPEGVKPIGCKWVFKKKTD 248

Query: 235 MDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTA 414
           MDGNV T+K RLVAKGF Q +G+DY+ETFSPV              +YDYEIWQMDVKTA
Sbjct: 249 MDGNVITFKGRLVAKGFRQFHGVDYDETFSPVAMLKSIKILLAIAAYYDYEIWQMDVKTA 308

Query: 415 FLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           FLN RL ED+YM QPEGFV+P    +VCKL+RSIYGLKQASR WN R
Sbjct: 309 FLNERLLEDVYMTQPEGFVDPQSAGKVCKLQRSIYGLKQASRSWNLR 355


>gb|PNX64819.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 283

 Score =  200 bits (508), Expect = 5e-61
 Identities = 97/167 (58%), Positives = 114/167 (68%)
 Frame = +1

Query: 55  DLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTD 234
           D +EP  Y+ A+  PE +KW  AM  E  S+  N VW  V+ P     +G KW+FKKKTD
Sbjct: 107 DQDEPVTYQEAIIGPESEKWLEAMKSETDSVYINQVWTLVEPPEGINPIGCKWVFKKKTD 166

Query: 235 MDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTA 414
           MDG VHTYKARLVAKGF Q +GI+Y+ETFSPV              ++DYEIWQMDVKTA
Sbjct: 167 MDGKVHTYKARLVAKGFKQIHGINYDETFSPVAMIKSIRILLVIAAYHDYEIWQMDVKTA 226

Query: 415 FLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           FLNG L ED+YM QPEGF      N++CKL+RSIYGLKQASR WN R
Sbjct: 227 FLNGNLLEDVYMTQPEGFGISEEANKICKLQRSIYGLKQASRSWNLR 273


>gb|PNX91241.1| putative retrotransposon Ty1-copia subclass protein, partial
           [Trifolium pratense]
          Length = 285

 Score =  200 bits (508), Expect = 6e-61
 Identities = 97/167 (58%), Positives = 114/167 (68%)
 Frame = +1

Query: 55  DLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTD 234
           D +EP  Y+ A+  PE +KW  AM  E  S+  N VW  V+ P     +G KW+FKKKTD
Sbjct: 115 DQDEPVTYQEAIIGPESEKWLEAMKSETDSVYINQVWTLVEPPEGINPIGCKWVFKKKTD 174

Query: 235 MDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTA 414
           MDG VHTYKARLVAKGF Q +GI+Y+ETFSPV              ++DYEIWQMDVKTA
Sbjct: 175 MDGKVHTYKARLVAKGFKQIHGINYDETFSPVAMIKSIRILLVIAAYHDYEIWQMDVKTA 234

Query: 415 FLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           FLNG L ED+YM QPEGF      N++CKL+RSIYGLKQASR WN R
Sbjct: 235 FLNGNLLEDVYMTQPEGFGISEEANKICKLQRSIYGLKQASRSWNLR 281


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  214 bits (544), Expect = 8e-61
 Identities = 104/185 (56%), Positives = 126/185 (68%)
 Frame = +1

Query: 1    RAPDRLCLNVEVEENMVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDL 180
            RAPDR     E  + ++ D +EP  Y+ AM   + +KW  AM  E++SM DN VW  VD 
Sbjct: 774  RAPDRYT-GAEQRDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDP 832

Query: 181  PPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXX 360
            P   K +  KW+FKKK DMDGNVH YKARLVAKGF Q  G+DY+ETFSPV          
Sbjct: 833  PDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIIL 892

Query: 361  XXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASR 540
                ++DYEIWQMDVKTAFLNG L ED+YM QP+GFV+P  P ++CKL++SIYGLKQASR
Sbjct: 893  AIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASR 952

Query: 541  QWNKR 555
             WN R
Sbjct: 953  SWNIR 957


>gb|PNX87842.1| retrotransposon protein putative Ty1-copia subclass, partial
           [Trifolium pratense]
          Length = 511

 Score =  199 bits (507), Expect = 2e-58
 Identities = 104/188 (55%), Positives = 125/188 (66%), Gaps = 3/188 (1%)
 Frame = +1

Query: 1   RAPDRLCLNVE---VEENMVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIE 171
           RAP+RL L V+   V E+   D ++P +Y+ AM   + DKW  AM  EM+SMK N VW  
Sbjct: 69  RAPERLNLMVQDDGVSEDYHND-DDPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTL 127

Query: 172 VDLPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXX 351
           V+     K +G KW++KKK   DG V TYKARLVAKG+ Q  GIDY+ETFSPV       
Sbjct: 128 VEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIR 187

Query: 352 XXXXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQ 531
                  +YDYEIWQMDVKTAFLNG L E++YM QPEGF +    N+VCKL+RSIYGLKQ
Sbjct: 188 ILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQ 247

Query: 532 ASRQWNKR 555
           ASR WN R
Sbjct: 248 ASRSWNIR 255


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana]
 emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  204 bits (520), Expect = 8e-58
 Identities = 97/165 (58%), Positives = 112/165 (67%)
 Frame = +1

Query: 61  NEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTDMD 240
           +EP +Y+ A+  P+ DKW  A   EM+SM  N VW  VDLP   K +  KWIFKKK DMD
Sbjct: 440 DEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMD 499

Query: 241 GNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTAFL 420
           GN+  YKA LVAKG+ Q +GIDY+ET+SPV              HYDYEIWQMDVKTAFL
Sbjct: 500 GNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFL 559

Query: 421 NGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           NG L+E +YM QPEGF  P    +VCKL RSIYGLKQASR WN R
Sbjct: 560 NGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLR 604


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  205 bits (521), Expect = 9e-58
 Identities = 98/165 (59%), Positives = 117/165 (70%)
 Frame = +1

Query: 61   NEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTDMD 240
            +EP  YK AM DP+ +KW  AM  E+ SM+DN VW  VD     K +  KWI+KKK DMD
Sbjct: 789  DEPNTYKEAMMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMD 848

Query: 241  GNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTAFL 420
            GNVH +KARLVAKGF Q  G+DY+ETFS V              ++DYEIWQMDVKTAFL
Sbjct: 849  GNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFL 908

Query: 421  NGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
            NG+L ED+YM QPEGFV+P   ++VCKL++SIYGLKQASR WN R
Sbjct: 909  NGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIR 953


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 829

 Score =  203 bits (516), Expect = 1e-57
 Identities = 95/167 (56%), Positives = 115/167 (68%)
 Frame = +1

Query: 55   DLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTD 234
            D +EP  Y  AM  P+ +KW  AM  E++SM  N VW  VD P   K +  KW+FKKKTD
Sbjct: 576  DDDEPTTYVEAMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTD 635

Query: 235  MDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTA 414
            +DGNVH YKARLVAKGF Q  G+DY+ETFSP               +++YEIWQMDVKT 
Sbjct: 636  VDGNVHIYKARLVAKGFRQIQGVDYDETFSPFAMLKSIRIVLAIAAYFNYEIWQMDVKTT 695

Query: 415  FLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
            FLNG LDED+YM QP+GFV+P    ++CKL++SIYGLKQASR WN R
Sbjct: 696  FLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIR 742


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score =  204 bits (518), Expect = 1e-57
 Identities = 97/186 (52%), Positives = 123/186 (66%), Gaps = 1/186 (0%)
 Frame = +1

Query: 1    RAPDRLCL-NVEVEENMVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVD 177
            R P R  L  +   + ++ D +EP  Y+  M  P+ +KW  AM  E++SM  N VW  VD
Sbjct: 655  RTPARYALLTIRQRDILLLDNDEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVD 714

Query: 178  LPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXX 357
             P   K +  KW+FKKK D+DGNVH YKA+LVAKGF Q  G+DY+ETFSP+         
Sbjct: 715  PPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIV 774

Query: 358  XXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQAS 537
                 ++DYEIWQMDVK AFLNG LDED+YM QP+GFV+P    ++CKL++SIYGLKQAS
Sbjct: 775  LAIAAYFDYEIWQMDVKIAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQAS 834

Query: 538  RQWNKR 555
            R WN R
Sbjct: 835  RSWNIR 840


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  202 bits (513), Expect = 3e-57
 Identities = 98/186 (52%), Positives = 124/186 (66%), Gaps = 1/186 (0%)
 Frame = +1

Query: 1    RAPDRLCLNVEVEEN-MVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVD 177
            R P R  L    + + ++ D +EP  Y+ AM  P+ +KW  AM  +++SM  N VW  VD
Sbjct: 478  RTPARYALLTTGQRDILLLDNDEPTIYEEAMVGPDSEKWLGAMKSKIESMHVNQVWNLVD 537

Query: 178  LPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXX 357
             P   K +  KW+FKK TD+DGNVH YKARLVAKGF Q  G+DY+ETFSPV         
Sbjct: 538  PPDGVKAIKCKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIV 597

Query: 358  XXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQAS 537
                 ++DYEIWQMDVKTA LNG LDED+YM QP+GFV+P    ++CKL++SIYGLK+AS
Sbjct: 598  LTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKKAS 657

Query: 538  RQWNKR 555
            R WN R
Sbjct: 658  RSWNIR 663


>gb|PKI73800.1| hypothetical protein CRG98_005784 [Punica granatum]
          Length = 140

 Score =  185 bits (469), Expect = 5e-57
 Identities = 88/139 (63%), Positives = 103/139 (74%)
 Frame = +1

Query: 124 MNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGI 303
           M  EM+SM  N VW  VD P  AK +G KW+FKKKTDMDGNV T+K RLVAKGF Q +G+
Sbjct: 1   MRSEMESMYTNQVWTLVDPPEGAKPIGCKWVFKKKTDMDGNVITFKGRLVAKGFRQVHGV 60

Query: 304 DYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLF 483
           DY+ETFSPV              +YDYEIWQMDVKTAFLNG+L +D+YM QPEGF++P  
Sbjct: 61  DYDETFSPVAILKSIRILLAIAAYYDYEIWQMDVKTAFLNGKLLKDVYMTQPEGFIDPHS 120

Query: 484 PNRVCKLKRSIYGLKQASR 540
             +VCKL+RSIYGLKQASR
Sbjct: 121 ARKVCKLQRSIYGLKQASR 139


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  199 bits (505), Expect = 6e-57
 Identities = 93/165 (56%), Positives = 115/165 (69%)
 Frame = +1

Query: 61  NEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTDMD 240
           +EP  Y+ AM  P  +KW  AM  +++SM  N VW  VD     K +  KW+FKKKTD+D
Sbjct: 302 DEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIECKWVFKKKTDVD 361

Query: 241 GNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTAFL 420
           GNVH YKARLVAKGF Q  G++Y+ETFSPV              ++DYEIWQMDVKTAFL
Sbjct: 362 GNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFL 421

Query: 421 NGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           +G LDED+YM QP+GFV+P    ++CKL++SIYGLKQASR WN R
Sbjct: 422 SGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIR 466


>gb|AMY96445.1| gag/pol protein [Momordica dioica]
          Length = 1313

 Score =  202 bits (515), Expect = 6e-57
 Identities = 104/186 (55%), Positives = 122/186 (65%), Gaps = 1/186 (0%)
 Frame = +1

Query: 1    RAPDRLCLNVEVEENMVGDLNE-PANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVD 177
            RAP+R    VE +  ++ +  E P NYK AM  P+ D+W  AMN EM+SM DN VW  VD
Sbjct: 798  RAPNRYLGLVETQIMILDNGEEDPTNYKQAMVGPDSDQWLKAMNSEMESMYDNKVWTLVD 857

Query: 178  LPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXX 357
            LP   K +G KWI+KKK D D NV  +KARLVAKGFT++  + YEETFSPV         
Sbjct: 858  LPSDVKPIGCKWIYKKKRDQDSNVTVFKARLVAKGFTRSLSLSYEETFSPVAMLKSIRII 917

Query: 358  XXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQAS 537
                  +DYEIWQMDVKTAFLNG L+E IYM QPEGFV      + CKL+ SIYGLKQAS
Sbjct: 918  LAIAAFFDYEIWQMDVKTAFLNGNLEESIYMIQPEGFVAQDQEQKACKLQGSIYGLKQAS 977

Query: 538  RQWNKR 555
            R WN R
Sbjct: 978  RSWNIR 983


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  199 bits (505), Expect = 1e-56
 Identities = 93/165 (56%), Positives = 115/165 (69%)
 Frame = +1

Query: 61  NEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSKWIFKKKTDMD 240
           +EP  Y+ AM  P  +KW  AM  +++SM  N VW  VD     K +  KW+FKKKTD+D
Sbjct: 347 DEPTTYEEAMVGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIECKWVFKKKTDVD 406

Query: 241 GNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEIWQMDVKTAFL 420
           GNVH YKARLVAKGF Q  G++Y+ETFSPV              ++DYEIWQMDVKTAFL
Sbjct: 407 GNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFL 466

Query: 421 NGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQWNKR 555
           +G LDED+YM QP+GFV+P    ++CKL++SIYGLKQASR WN R
Sbjct: 467 SGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIR 511


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  201 bits (511), Expect = 2e-56
 Identities = 99/186 (53%), Positives = 122/186 (65%), Gaps = 1/186 (0%)
 Frame = +1

Query: 1    RAPDRLCLNVEVEEN-MVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVD 177
            R P R  L    + + ++ D +EP  Y+ AM  P+ +KW  AM  E++SM  N VW  VD
Sbjct: 634  RTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVD 693

Query: 178  LPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXX 357
             P   K +  KWIFKK TD+DG VH Y ARLVAKGF Q  G+DY+ETFSPV         
Sbjct: 694  PPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIV 753

Query: 358  XXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQAS 537
                 ++DYEIWQMDVKTAFLNG LDED+YM QP+GFV+P    ++CKL++SIY LKQAS
Sbjct: 754  LAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQAS 813

Query: 538  RQWNKR 555
            R WN R
Sbjct: 814  RSWNIR 819


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  201 bits (511), Expect = 2e-56
 Identities = 99/186 (53%), Positives = 122/186 (65%), Gaps = 1/186 (0%)
 Frame = +1

Query: 1    RAPDRLCLNVEVEEN-MVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVD 177
            R P R  L    + + ++ D +EP  Y+ AM  P+ +KW  AM  E++SM  N VW  VD
Sbjct: 721  RTPARYALLTSGQRDILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVD 780

Query: 178  LPPKAKVVGSKWIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXX 357
             P   K +  KWIFKK TD+DG VH Y ARLVAKGF Q  G+DY+ETFSPV         
Sbjct: 781  PPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIV 840

Query: 358  XXXXXHYDYEIWQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQAS 537
                 ++DYEIWQMDVKTAFLNG LDED+YM QP+GFV+P    ++CKL++SIY LKQAS
Sbjct: 841  LAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQAS 900

Query: 538  RQWNKR 555
            R WN R
Sbjct: 901  RSWNIR 906


>gb|KYP30896.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 289

 Score =  185 bits (470), Expect = 3e-55
 Identities = 95/172 (55%), Positives = 112/172 (65%)
 Frame = +1

Query: 31  EVEENMVGDLNEPANYKAAMADPEKDKWQIAMNGEMQSMKDNDVWIEVDLPPKAKVVGSK 210
           E E+ +    ++P N+  AM      KW  AM  EM+SM+DNDVW  V+LP   K +G K
Sbjct: 22  EYEDGIGLTEDDPINFCQAMQSSSSQKWIDAMKDEMKSMQDNDVWDLVELPEGVKPIGCK 81

Query: 211 WIFKKKTDMDGNVHTYKARLVAKGFTQTYGIDYEETFSPVXXXXXXXXXXXXXXHYDYEI 390
           WIFK K D  GN+  YKARLVAKGFTQ   IDY+ETFSPV              HYD E+
Sbjct: 82  WIFKTKRDSKGNIERYKARLVAKGFTQKEDIDYKETFSPVSSKDSFRIIMALVAHYDLEL 141

Query: 391 WQMDVKTAFLNGRLDEDIYMAQPEGFVNPLFPNRVCKLKRSIYGLKQASRQW 546
            QMDVKTAFLNG ++E IYM QPE FV+    + VCKLK+SIYGLKQASRQW
Sbjct: 142 HQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLKKSIYGLKQASRQW 193