BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00007990
         (3127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   840   0.0  
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   843   0.0  
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   840   0.0  
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   819   0.0  
dbj|GAU30708.1| hypothetical protein TSUD_39320 [Trifolium subte...   811   0.0  
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   805   0.0  
dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subt...   804   0.0  
gb|PNX93770.1| histone deacetylase [Trifolium pratense]               801   0.0  
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   753   0.0  
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   744   0.0  
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   699   0.0  
emb|CAN71108.1| hypothetical protein VITISV_001478 [Vitis vinifera]   700   0.0  
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   678   0.0  
gb|PNX94124.1| retrovirus-related Pol polyprotein from transposo...   690   0.0  
gb|OTG14868.1| putative zinc finger, CCHC-type [Helianthus annuus]    689   0.0  
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...   681   0.0  
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]   681   0.0  
gb|PNX97009.1| retrovirus-related Pol polyprotein from transposo...   602   0.0  
gb|PNY03462.1| retrovirus-related Pol polyprotein from transposo...   601   0.0  
gb|PNX77541.1| retrofit protein [Trifolium pratense]                  587   0.0  

>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  840 bits (2171), Expect = 0.0
 Identities = 448/1028 (43%), Positives = 627/1028 (60%), Gaps = 26/1028 (2%)
 Frame = -1

Query: 3118 INVKLIWLINHTLPLPSIHHGILTPEQRIMXXXXXXXXXXXXXTMEMINSKWETTLQGQT 2939
            IN K  + +N+ L +PSI   +++  Q                 ++  ++  E  LQG  
Sbjct: 64   INPKFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTN-EVLLQGSV 122

Query: 2938 ILRGDKHHGLYRLP---PHSFRQSPRAFHSSRI-----------SLHGWHRRLAHPHEPI 2801
                    GLY+ P   P+   QS +    +RI           S   WH RL HP+  +
Sbjct: 123  -----GSDGLYKFPALLPNPSTQSVQQQQLARIFSVNTAATSPVSFATWHSRLGHPNVDV 177

Query: 2800 LRRLVSTFQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKPFELIYSDVWGPAPVCS 2621
            ++ +   + + + SN   N C  C L KSHRL   +S    + PF+L+YSD+WGPAPV S
Sbjct: 178  MKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTS 237

Query: 2620 INSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSVQSDWGGEYR 2441
               ++Y+V F+D  T+F WIY +  K++ +N+F  F  MVK Q+   IK++Q+DWGGEYR
Sbjct: 238  TCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYR 297

Query: 2440 NVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAFKTAT 2261
            + +T+L   GI HR+ CPHT  QNG  ER++R IVE GL L+AQ+ LP  FW+H+F TA 
Sbjct: 298  SFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAV 357

Query: 2260 YLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIG 2081
            YL NR  +  +    PY  L+ + PDY  L++FGC C+P+LRPYN HK+ FRS+ C+F+G
Sbjct: 358  YLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLG 417

Query: 2080 YSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPATPDHNPSIVVTSNV 1901
            YS SHKGY C   A   +YIS+ V+F+E  FPY  L +   ++    P    S+ +T N 
Sbjct: 418  YSTSHKGYKCLA-ADGRLYISKDVVFNETKFPYKDLFSSSKASDSQLPI---SVPLTINP 473

Query: 1900 QQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSI- 1724
              +                   +  PN                         ++ PTS  
Sbjct: 474  TPTPT-------------HATRLTSPNPPTTSPSLISDSYSPNTAAHTSPSTLSIPTSSN 520

Query: 1723 FRPAAN------NQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAE 1562
              P+++      N HPM TRA+   +KP+   T L + VEP+   QA+ +  W  AM+ E
Sbjct: 521  LEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTE 580

Query: 1561 YDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFD 1382
            Y+AL+ NNTWSLV  P +   +GCKW++R+K+  +GS+ ++KARLVA+GF+Q+ G DY +
Sbjct: 581  YNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHE 640

Query: 1381 TFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLV 1202
            TFSPVIKP T+RL+L++AL++ W I+QLD+NNAFLNG L EEVYM+QP GFE + + NLV
Sbjct: 641  TFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFEASDK-NLV 699

Query: 1201 CRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLII 1022
            C+L+KA+YGLKQAPRAWF+KLK+ L+   F A + D SLF++   N  IY+LVYVDD+II
Sbjct: 700  CKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIII 759

Query: 1021 TGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKTG-LTLSQQAYIKDILNRSNM 845
            TG +   LH  ++ L+  FSLKDLGDL FFLG+++     G L L+Q  YI+D+LNR++M
Sbjct: 760  TGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDM 819

Query: 844  SLASPMSTPADPYSKLQKAG-DPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHS 668
              + P+S+P    SKL K G + F + +LYR VVG+LQYATITRP+IS+SVN+VCQ+M  
Sbjct: 820  EGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSH 879

Query: 667  PTNLHWQAVKRILRYLKGTLHHCLHFKPTKAK---GLHAFXXXXXXXXXXXXXSQYGFAI 497
            P   HW AVKRILRYLKGT    L  +P  +     +HA+             S  G +I
Sbjct: 880  PLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASI 939

Query: 496  FHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDN 317
            F G NL+SW S+KQ VVARSSTEAEYRSLA  T E+ W++ L+S+L    + +P++ CDN
Sbjct: 940  FLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKVTHS-TPIIFCDN 998

Query: 316  VGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVC 137
            +  + +  NPV+  R+KH+ LD  F+RE+V +  LQ+ HV ++DQ AD+ TK L+  R C
Sbjct: 999  LSTVALAHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFC 1058

Query: 136  FLRSKLQV 113
             LRSKLQV
Sbjct: 1059 ELRSKLQV 1066


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  843 bits (2179), Expect = 0.0
 Identities = 449/954 (47%), Positives = 604/954 (63%), Gaps = 6/954 (0%)
 Frame = -1

Query: 2938 ILRGDKHHGLYRLPPHSFRQSPRAFHSSRISLHG--WHRRLAHPHEPILRRLVSTFQLPV 2765
            +L+G    GLY     S    PRAF ++     G  WH RL HP  PIL + +++    V
Sbjct: 447  LLKGWLRDGLYEFSSSS---PPRAFVTTGSFSDGAIWHSRLGHPAVPILSKALASCNPSV 503

Query: 2764 SS--NKFPNVCDSCQLAKSHRLHLPISHVSSSKPFELIYSDVWGPAPVCSINSHRYFVLF 2591
            +   NK    C  C LAKSH L   +S   +S P  LI++D+WGPAP  SI   RYF++F
Sbjct: 504  TLQINKIAP-CIICPLAKSHSLPYSLSSSHASHPLALIHTDLWGPAPSTSITGARYFLIF 562

Query: 2590 IDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSVQSDWGGEYRNVSTFLKNHG 2411
            IDD ++  WIYF+S K +    F+ FR MV+ Q    IK +QSD GGE+     +L+ HG
Sbjct: 563  IDDYSRHTWIYFLSTKDQALQSFITFRKMVENQLQTTIKCIQSDNGGEFLAFKPYLEAHG 622

Query: 2410 IIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAFKTATYLHNRTITPL 2231
            I+H+ SCPHT +QNG  ER+ R +VE GLAL+AQS LP  +W +AF+TA YL N     L
Sbjct: 623  ILHQFSCPHTPQQNGRAERKIRHLVETGLALMAQSFLPSKYWTYAFQTAVYLINLLPAKL 682

Query: 2230 LTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGYSASHKGYLC 2051
            L ++SP Q L+ K+P+Y  L+VFGCLC+P LRPY  HK+ +RS  C+F+GY+ +HKGYLC
Sbjct: 683  LHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCYRSTACVFLGYAPAHKGYLC 742

Query: 2050 YHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPATPDHNPSIVVTSNVQQSQNLXXXX 1871
               +T+ IYISR+VIF E  FP+ S  +  SS  P  P   P+++ + ++    +     
Sbjct: 743  LDVSTNRIYISRNVIFHESSFPFQSS-SPPSSPSPHLPSSTPALINSPSLSAPSS----- 796

Query: 1870 XXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSIFRPAANNQHPM 1691
                           P                            +P     P   N HPM
Sbjct: 797  ---------------PAVSSPIITSDSXPPLIPVPFATSSPAAPSPP----PLPLNTHPM 837

Query: 1690 VTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPT 1511
            VTRA++   K +SF   +  T EPR +SQA K+  W  AM +EY AL++NNTWSLV  P+
Sbjct: 838  VTRAKSGIHKKRSF--IVQHTTEPRTYSQASKNDSWVQAMNSEYQALLRNNTWSLVPPPS 895

Query: 1510 NTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSI 1331
            + +IVGC+WIY++K R DGSIDRHKARLVAQGF+Q  G+DYFDTFSPV+KP TIRL+L++
Sbjct: 896  SAHIVGCRWIYKLKYRPDGSIDRHKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILAL 955

Query: 1330 ALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAW 1151
            A+S  W +RQLD+ NAFLNGDL EEV+M QP+GF + T P  VC+L+KALYGLKQAPRAW
Sbjct: 956  AVSFQWSVRQLDVENAFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAW 1015

Query: 1150 FNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNK 971
            F KL+  L+  GF++ ++DTSLF+  T    + +LVYVDD+++TG++   +  FI+ L  
Sbjct: 1016 FQKLRIALLDYGFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPMLVSHFISYLRT 1075

Query: 970  TFSLKDLGDLSFFLGLQITRSKTGLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKL-Q 794
             F+L+DLG LS+FLG+Q  +  + L L+Q  YI D+LNR+ M  + P  TP      L Q
Sbjct: 1076 KFALRDLGPLSYFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQ 1135

Query: 793  KAGDPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKG 614
              G   S+P+ YR+ VG+LQY T+TRPDI+++VN+ CQ+M  P+++HW AVKRILRYLKG
Sbjct: 1136 SDGMSLSDPSEYRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKG 1195

Query: 613  TLHHCLHFKPTKAKGLHAFXXXXXXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSS 434
            T+H  LHF+P  +  L  +             S  G+ +F G+NLISW+S KQ++V++SS
Sbjct: 1196 TIHLGLHFQPAASMELQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSS 1255

Query: 433  TEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIAL 254
             E+EYR L   TAEL+W++ L+ +LC P T  P+L CDN  A  +  NPV  +RSKHI L
Sbjct: 1256 AESEYRGLVSLTAELVWIQSLLQELCLP-TSPPILWCDNQSAAHLAANPVFHSRSKHIEL 1314

Query: 253  DFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVCFLRSKLQVR-PDLEL 95
            D HFIRE+V   +LQIC+V S DQ+ADIFTK L   + C LRSKL V  P L L
Sbjct: 1315 DLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPPLSL 1368


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  840 bits (2171), Expect = 0.0
 Identities = 448/1028 (43%), Positives = 627/1028 (60%), Gaps = 26/1028 (2%)
 Frame = -1

Query: 3118 INVKLIWLINHTLPLPSIHHGILTPEQRIMXXXXXXXXXXXXXTMEMINSKWETTLQGQT 2939
            IN K  + +N+ L +PSI   +++  Q                 ++  ++  E  LQG  
Sbjct: 399  INPKFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTN-EVLLQGSV 457

Query: 2938 ILRGDKHHGLYRLP---PHSFRQSPRAFHSSRI-----------SLHGWHRRLAHPHEPI 2801
                    GLY+ P   P+   QS +    +RI           S   WH RL HP+  +
Sbjct: 458  -----GSDGLYKFPALLPNPSTQSVQQQQLARIFSVNTAATSPVSFATWHSRLGHPNVDV 512

Query: 2800 LRRLVSTFQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKPFELIYSDVWGPAPVCS 2621
            ++ +   + + + SN   N C  C L KSHRL   +S    + PF+L+YSD+WGPAPV S
Sbjct: 513  MKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTS 572

Query: 2620 INSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSVQSDWGGEYR 2441
               ++Y+V F+D  T+F WIY +  K++ +N+F  F  MVK Q+   IK++Q+DWGGEYR
Sbjct: 573  TCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYR 632

Query: 2440 NVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAFKTAT 2261
            + +T+L   GI HR+ CPHT  QNG  ER++R IVE GL L+AQ+ LP  FW+H+F TA 
Sbjct: 633  SFTTYLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAV 692

Query: 2260 YLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIG 2081
            YL NR  +  +    PY  L+ + PDY  L++FGC C+P+LRPYN HK+ FRS+ C+F+G
Sbjct: 693  YLINRLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLG 752

Query: 2080 YSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPATPDHNPSIVVTSNV 1901
            YS SHKGY C   A   +YIS+ V+F+E  FPY  L +   ++    P    S+ +T N 
Sbjct: 753  YSTSHKGYKCLA-ADGRLYISKDVVFNETKFPYKDLFSSSKASDSQLPI---SVPLTINP 808

Query: 1900 QQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSI- 1724
              +                   +  PN                         ++ PTS  
Sbjct: 809  TPTPT-------------HATRLTSPNPPTTSPSLISDSYSPNTAAHTSPSTLSIPTSSN 855

Query: 1723 FRPAAN------NQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAE 1562
              P+++      N HPM TRA+   +KP+   T L + VEP+   QA+ +  W  AM+ E
Sbjct: 856  LEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTE 915

Query: 1561 YDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFD 1382
            Y+AL+ NNTWSLV  P +   +GCKW++R+K+  +GS+ ++KARLVA+GF+Q+ G DY +
Sbjct: 916  YNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHE 975

Query: 1381 TFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLV 1202
            TFSPVIKP T+RL+L++AL++ W I+QLD+NNAFLNG L EEVYM+QP GFE + + NLV
Sbjct: 976  TFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFEASDK-NLV 1034

Query: 1201 CRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLII 1022
            C+L+KA+YGLKQAPRAWF+KLK+ L+   F A + D SLF++   N  IY+LVYVDD+II
Sbjct: 1035 CKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIII 1094

Query: 1021 TGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKTG-LTLSQQAYIKDILNRSNM 845
            TG +   LH  ++ L+  FSLKDLGDL FFLG+++     G L L+Q  YI+D+LNR++M
Sbjct: 1095 TGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDM 1154

Query: 844  SLASPMSTPADPYSKLQKAG-DPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHS 668
              + P+S+P    SKL K G + F + +LYR VVG+LQYATITRP+IS+SVN+VCQ+M  
Sbjct: 1155 EGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSH 1214

Query: 667  PTNLHWQAVKRILRYLKGTLHHCLHFKPTKAK---GLHAFXXXXXXXXXXXXXSQYGFAI 497
            P   HW AVKRILRYLKGT    L  +P  +     +HA+             S  G +I
Sbjct: 1215 PLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASI 1274

Query: 496  FHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDN 317
            F G NL+SW S+KQ VVARSSTEAEYRSLA  T E+ W++ L+S+L    + +P++ CDN
Sbjct: 1275 FLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKVTHS-TPIIFCDN 1333

Query: 316  VGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVC 137
            +  + +  NPV+  R+KH+ LD  F+RE+V +  LQ+ HV ++DQ AD+ TK L+  R C
Sbjct: 1334 LSTVALAHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFC 1393

Query: 136  FLRSKLQV 113
             LRSKLQV
Sbjct: 1394 ELRSKLQV 1401


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  819 bits (2116), Expect = 0.0
 Identities = 427/965 (44%), Positives = 602/965 (62%), Gaps = 21/965 (2%)
 Frame = -1

Query: 2944 QTILRGDKHHGLYR------LPPHSFRQSPRAFHSSRISLHG---------WHRRLAHPH 2810
            +T+LRG+  +GLY       L P  +  +  +  ++R +L+          WH RLAH  
Sbjct: 431  ETLLRGNLKNGLYVFDEVQILKPDVYEHTVDSVPTNRTTLYVQRTRKSYDVWHNRLAHAS 490

Query: 2809 EPILRRLVSTFQLPVSSNKFPN-VCDSCQLAKSHRLHLPISHVSSSKPFELIYSDVWGPA 2633
              I++ ++ T  +P+  N   + VC SC + KSH L    S+   + P EL+YSDVWGP+
Sbjct: 491  RKIVQAVMKTCNVPMPINHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSDVWGPS 550

Query: 2632 PVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSVQSDWG 2453
               S    RY+V F D  +K+ WIYFM  KSE  + F++F++MV+ QF   IK  QSD G
Sbjct: 551  HYASREGFRYYVHFTDAFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIKMFQSDGG 610

Query: 2452 GEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAF 2273
             E+  ++     +GI HR+SCPH+ +QNG  ER++R I E GL LL+ S LP IFW  AF
Sbjct: 611  KEFTCLTKLFNENGITHRLSCPHSHQQNGTAERKHRHITEVGLTLLSSSGLPHIFWSDAF 670

Query: 2272 KTATYLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPC 2093
             TA ++ NR  TP+L ++SPY+ L+ K+PDY  L+ FGC CYP+LRP+N HK+DFRS  C
Sbjct: 671  STAIHVINRLPTPILGHKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFNSHKMDFRSSQC 730

Query: 2092 IFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPA-TPDHNPSIV 1916
            +FIGYS  HKGY C+      I ISR+V+FDED FP PS     ++N+   +  H+P  V
Sbjct: 731  VFIGYSMQHKGYKCFT-TNGKIIISRNVVFDEDTFPGPSYF--NTNNVAGLSSSHSPQPV 787

Query: 1915 VTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTN 1736
             + +V  SQ+L                 ++ +                         +T 
Sbjct: 788  PSIHVLPSQSLAPNSATTVPLVSSIDESLQDSQLTSTTDTSQDNLITSSSQPNPQPIITT 847

Query: 1735 PTSIFRPAAN--NQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAE 1562
                  PA    NQHPM+TRA+    KPK+F     +T EP   +QA+ +K W+ AM+ E
Sbjct: 848  VPDPASPATRTTNQHPMITRAKIGVFKPKAF----LATSEPISVAQALDNKHWKQAMQDE 903

Query: 1561 YDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFD 1382
            Y+AL+KN+TW LV+ P     + CKWI++ K + DGSI RHKARLVA+GFSQ++G+DY D
Sbjct: 904  YNALLKNHTWDLVSLPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTD 963

Query: 1381 TFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLV 1202
            TFSPV+KP +IR+VL++A+S GW I Q+D++NAFLNGDL E++YM QP+GF +   PN V
Sbjct: 964  TFSPVVKPVSIRIVLALAVSKGWPIHQIDVDNAFLNGDLKEDIYMLQPQGFHNGA-PNTV 1022

Query: 1201 CRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLII 1022
            C+L KALYGLKQAPRAWF KL   L+  GFK  +SD+SLF   +   +IY+L+YVDD+II
Sbjct: 1023 CKLRKALYGLKQAPRAWFQKLTLILLQLGFKQARSDSSLFTFTSKVTSIYILIYVDDIII 1082

Query: 1021 TGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKT-GLTLSQQAYIKDILNRSNM 845
            T      +   I++L++ F LKDLG L +FLG+++      G+ LSQ  Y+KDIL++ NM
Sbjct: 1083 TSNSPAAIQTLISTLHRFFPLKDLGSLHYFLGIEVNSDGAGGIHLSQTKYLKDILDKLNM 1142

Query: 844  SLASPMSTPADPYSKLQKAGDPF-SNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHS 668
            S A P+ TP  P  KL   G     +P+LYR V+G+LQY TITRPDI+Y+VN++CQ+MH 
Sbjct: 1143 SNAKPVKTPMAPSLKLTNDGTAVCPDPSLYRSVIGALQYLTITRPDIAYTVNKLCQFMHH 1202

Query: 667  PTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXXXXXXXXXXXSQYGFAIFHG 488
            P   HW+AVKR+LRYL+GTL H LH+K +   G+HA+             S  G  ++ G
Sbjct: 1203 PLESHWKAVKRLLRYLQGTLQHGLHYKKSTDTGIHAYCDSDWASDHEDMRSTSGNCVYLG 1262

Query: 487  ANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDNVGA 308
             N++SW ++KQ+VV+RSSTEAE+RSLA    E+ +++ L+S+L    T  PL+ CDN GA
Sbjct: 1263 PNIVSWMAKKQRVVSRSSTEAEFRSLASLVTEVQYIQNLLSELHNSSTQPPLIWCDNQGA 1322

Query: 307  IFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVCFLR 128
            + ++ NPV+ T++KH  LD  F+RE+V  G++Q+ H+ +  Q+AD+ TK  +      LR
Sbjct: 1323 VLLSANPVLHTKTKHFELDLWFVRERVARGQIQVKHIPARFQVADLLTKAPSSSIFLALR 1382

Query: 127  SKLQV 113
             KL V
Sbjct: 1383 HKLTV 1387


>dbj|GAU30708.1| hypothetical protein TSUD_39320 [Trifolium subterraneum]
          Length = 1432

 Score =  811 bits (2094), Expect = 0.0
 Identities = 411/924 (44%), Positives = 595/924 (64%), Gaps = 10/924 (1%)
 Frame = -1

Query: 2848 SLHGWHRRLAHPHEPILRRLVSTFQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKP 2669
            S + WH RL H H   ++ +++  ++P S+ +   +C +C + KSH L+ P+S+   +KP
Sbjct: 538  SFYKWHLRLGHAHSRAVQTVLNWCKIPFSNKESVALCIACAVGKSHTLYAPLSNTVYTKP 597

Query: 2668 FELIYSDVWGPAPVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQF 2489
            FE+I+ D+WGPAP  S   + Y++ F+D  TK+ WIYF++QKS+    F  F T+++TQF
Sbjct: 598  FEVIHCDLWGPAPFVSYYGYSYYIAFVDTYTKYTWIYFLNQKSDALKAFNQFLTLIQTQF 657

Query: 2488 SCDIKSVQSDWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQ 2309
               +K+VQSDWGGE+R  ++ L   GI HR++CPHT  QNG VER++R IVE GL LL+Q
Sbjct: 658  QATVKAVQSDWGGEFRPFTSLLNTLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTLLSQ 717

Query: 2308 SSLPQIFWEHAFKTATYLHNRTITPLL-TYESPYQHLYQKVPDYAFLKVFGCLCYPYLRP 2132
            +SLP  FW+H+F  A +L N+  +  L +++SP+  L+   PDY+ LKVFGCLC+P+LRP
Sbjct: 718  ASLPLKFWDHSFTQAVHLINKLPSSALPSFKSPHHMLFNVCPDYSQLKVFGCLCFPHLRP 777

Query: 2131 YNPHKIDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSN 1952
            YN +K+ FRS PC ++G S  HKG+ C   A   IY+S+ VIF E  FP+ +L+   SS+
Sbjct: 778  YNKNKLQFRSSPCTYLGISPQHKGHKCLD-AQGKIYVSKDVIFHESNFPFTTLVPSASSS 836

Query: 1951 ----IPATPDHNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXX 1784
                  A+P   P+      V+Q  ++                +   N            
Sbjct: 837  QVDPSNASPSQEPNTTSPLTVEQVNSIISQPINYSQPTPPSSGVQTNN------------ 884

Query: 1783 XXXXXXXXXXXIFVTNPTSIFRPAANNQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQ 1604
                           +PT     + +N+H M+TR +T +LKPK++    ++++EP     
Sbjct: 885  ---------------SPTQSI--SNHNEHNMITRGKTGNLKPKTY----TASIEPTTVKG 923

Query: 1603 AVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLV 1424
            A+    W  AMK EY ALM N+TWSLV  P++   +GCKWI+RIK+  DGS++++KARLV
Sbjct: 924  ALADPQWAQAMKTEYKALMDNHTWSLVPLPSHRKAIGCKWIFRIKENPDGSVNKYKARLV 983

Query: 1423 AQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMR 1244
            A+GF Q  G D+ +TFSPVIKP TIRL+L++A++  W ++Q+DINNAFLNG L EEVYM 
Sbjct: 984  AKGFLQTPGFDFKETFSPVIKPVTIRLILTLAVTYKWTVQQIDINNAFLNGILQEEVYMT 1043

Query: 1243 QPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPN 1064
            QPKGFE + + +LVC+L+K+LYGLKQAPRAW+++L   L+  GF   + D SL VH    
Sbjct: 1044 QPKGFEASDK-SLVCKLHKSLYGLKQAPRAWYDRLTQTLLQMGFVKSKCDPSLLVHHQQG 1102

Query: 1063 VTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKTG-LTLS 887
               YVLVYVDD++ITG+  + +   I  L+  F+LK LG++ +FLG+Q+  + TG +TL 
Sbjct: 1103 ACTYVLVYVDDILITGSSSQLIQDLIHKLHIKFALKKLGEVDYFLGIQVHHNNTGDITLH 1162

Query: 886  QQAYIKDILNRSNMSLASPMSTPADPYSKLQKAG-DPFSNPTLYRQVVGSLQYATITRPD 710
            Q  YIKD+L+R+NM    P+ +P     +L K G D   + +LYR  VG+LQYAT+TRPD
Sbjct: 1163 QSKYIKDLLSRTNMEHCKPIGSPMANSCRLSKFGTDIMQDASLYRSTVGALQYATLTRPD 1222

Query: 709  ISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAK---GLHAFXXXXXX 539
            I+YSVN+VCQ+M  P + HW+AVKRILRYLKGT++H L  +P+       L A+      
Sbjct: 1223 IAYSVNKVCQFMSHPLDSHWKAVKRILRYLKGTINHGLLIQPSTTGPPFSLRAYSDADWA 1282

Query: 538  XXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDL 359
                   S  G  I+ G NL+SW+S+KQ++VARSSTEAEYRS+A TTAEL+W++ L+ +L
Sbjct: 1283 TDQDDRRSTSGSCIYFGPNLVSWSSKKQQLVARSSTEAEYRSMANTTAELLWIQSLLQEL 1342

Query: 358  CAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQI 179
              P   +P L+CDN+ A+ +  NP++ +R+KHI LD HF+RE+V S +L + HVS+ DQ+
Sbjct: 1343 QVPFH-APTLLCDNISAVSLAHNPILHSRTKHIELDIHFVREKVLSKQLNVRHVSAADQL 1401

Query: 178  ADIFTKPLAKDRVCFLRSKLQVRP 107
            AD  TKPL+      +++KL+V P
Sbjct: 1402 ADPLTKPLSPSNYSTIKTKLKVFP 1425


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  805 bits (2080), Expect = 0.0
 Identities = 412/926 (44%), Positives = 570/926 (61%), Gaps = 18/926 (1%)
 Frame = -1

Query: 2836 WHRRLAHPHEPILRRLVSTFQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKPFELI 2657
            WH+RL HP    ++ ++S   +   +    N C SC L K HR    +SH + +KP ELI
Sbjct: 524  WHKRLGHPSAATIKNVLSKCNVAHINKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELI 583

Query: 2656 YSDVWGPAPVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDI 2477
            + D+WGP  V S + +RY++ F+D  ++F WI+ +  KSE    F+NF+T V+ QF   I
Sbjct: 584  HLDLWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKI 643

Query: 2476 KSVQSDWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLP 2297
            KS+Q+DWGGE+R   ++L  +GI+HRVSCPHTQ+QNG  ER++R IVE GL LL  +SLP
Sbjct: 644  KSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLP 703

Query: 2296 QIFWEHAFKTATYLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHK 2117
              FW+ +F+T  YL NR  T +L ++ P + L++ +PDY+FLKVFGC C+P LRPYN HK
Sbjct: 704  LKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHK 763

Query: 2116 IDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPATP 1937
            + +RS+ C F+GYS  HKGY C   +   +YIS  VIF+E  FPY   I   S  +    
Sbjct: 764  LQYRSEECTFLGYSLKHKGYKCMS-SNGRVYISHDVIFNETSFPYSKTIQVSSCLLSTV- 821

Query: 1936 DHNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFE-XXXXXXXXXXXXXXXXXX 1760
              +PS   TS++  S +                    P  E                   
Sbjct: 822  --SPS---TSHLSPSASPPVLSPTMLPTPTSPISSARPISEMDNIVSTHPHAPNSADTTL 876

Query: 1759 XXXIFVTNPTSIFRPAANNQHPMVTRAQTNSLKPKSFNT------TLSSTVEPRLF---- 1610
                 V+NP  +  P  +    +   + T ++   + NT        S  V+P++F    
Sbjct: 877  TPAQVVSNP--VATPVQHVVSSIADASVTRTIAKDADNTHPMITRAKSGIVKPKIFIAAI 934

Query: 1609 ------SQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSI 1448
                  S A++   W+ AM AEYDAL +NNTWSLV  P     +GCKW+Y+ K+  DG++
Sbjct: 935  REPSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTV 994

Query: 1447 DRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGD 1268
             ++KARLVA+GF Q+ G D+ +TFSPV+KP+T+R+V +IALS  W I+QLD+NNAFLNGD
Sbjct: 995  QKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGD 1054

Query: 1267 LSEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTS 1088
            L EEV+M+QP+GF D   PNLVCRL+KALYGLKQAPRAWF KL   L+S GF + +SD S
Sbjct: 1055 LQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQS 1114

Query: 1087 LFVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRS 908
            LF+  TPN   YVLVYVDD+++ G+D   +   IA LN  FSLKDLG++ +FLG+Q++ +
Sbjct: 1115 LFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHT 1174

Query: 907  KTGLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKLQKA-GDPFSNPTLYRQVVGSLQY 731
              GL LSQ  YI+D+L ++ M    P  TP     KL+   GDP  +   YR  VG+LQY
Sbjct: 1175 NNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQY 1234

Query: 730  ATITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXX 551
             TITRP++S+SVN+VCQ+M +PT  HW+ VKRILRYL+GTL H LH K +    L  F  
Sbjct: 1235 VTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCD 1294

Query: 550  XXXXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLL 371
                       S  G  +F G NLISW S+KQ +V+RSS E EYRSLA   AE+ WL+ L
Sbjct: 1295 ADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSL 1354

Query: 370  ISDLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSS 191
            +S+L  PL   PL+ CDN+  + ++ NPV+  R+KHI LD +F+RE+V   ++++ HV S
Sbjct: 1355 LSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPS 1414

Query: 190  VDQIADIFTKPLAKDRVCFLRSKLQV 113
             DQ+AD+ TK ++  +    R KL++
Sbjct: 1415 ADQLADVLTKTVSSTQFIEFRHKLRI 1440


>dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subterraneum]
          Length = 1433

 Score =  804 bits (2077), Expect = 0.0
 Identities = 411/926 (44%), Positives = 587/926 (63%), Gaps = 9/926 (0%)
 Frame = -1

Query: 2848 SLHGWHRRLAHPHEPILRRLVSTFQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKP 2669
            + H WH RL H H   ++ +++  ++P S+      C +C + KSHRL+ P+S+    KP
Sbjct: 538  TFHKWHLRLGHAHNRAVQTVLNWCKIPFSNKNHTFPCIACAVGKSHRLYAPLSNTMYIKP 597

Query: 2668 FELIYSDVWGPAPVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQF 2489
            FE+++ D+WGPAP  S   + Y++ F+D  TK+ W Y ++QKS+    F  F  +++ QF
Sbjct: 598  FEVVHCDLWGPAPFASYYGYNYYIAFVDTYTKYTWFYLLNQKSDALKAFNQFVKLIQNQF 657

Query: 2488 SCDIKSVQSDWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQ 2309
               IK VQSDWGGE+R  ++ L + GI HR++CPHT  QNG VER++R IVE GL LL+Q
Sbjct: 658  QATIKVVQSDWGGEFRPFTSLLDSLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTLLSQ 717

Query: 2308 SSLPQIFWEHAFKTATYLHNRTITPLL-TYESPYQHLYQKVPDYAFLKVFGCLCYPYLRP 2132
            +SLP  FW+H+F  A +L N+  +  L +++SP+  L+   P+Y  LKVFGCLC+P+LRP
Sbjct: 718  ASLPLKFWDHSFTQAVHLINKLPSSALPSFKSPHHLLFNTCPEYTNLKVFGCLCFPHLRP 777

Query: 2131 YNPHKIDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSN 1952
            YN +KI FRS PC+++G S  HKG+ C       IY+S+ V F E  FPY +L    SS+
Sbjct: 778  YNKNKIQFRSSPCVYLGVSPQHKGHKCLD-TNGKIYVSKDVTFHESNFPYTTLF---SSD 833

Query: 1951 IPATPDHNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIV---EPNFEXXXXXXXXXXX 1781
            + +  +H+      SN+    NL                 +   EPN             
Sbjct: 834  LSSQSNHS------SNLSTDLNLHSPPLTVEQINSLISQPITNSEPNIASPLPLHK---- 883

Query: 1780 XXXXXXXXXXIFVTNPTSIFRPAANNQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQA 1601
                         T+P      + +N H M+TR +T SLKPK+F    ++++EP     A
Sbjct: 884  ------------TTSPPPPI--SLHNDHSMITRGKTGSLKPKTF----TASIEPTTVKTA 925

Query: 1600 VKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVA 1421
            +    W  AM  EY ALM N+TWSLV  P +   +GCKWI++IK+  DGS++++KARLVA
Sbjct: 926  LADPQWAQAMNTEYKALMDNHTWSLVPLPPHRRAIGCKWIFKIKENPDGSVNKYKARLVA 985

Query: 1420 QGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQ 1241
            +GF Q  G D+ +TFSPVIKP TIRL+L++A++  W ++Q+DINNAFLNG L EEVYM Q
Sbjct: 986  KGFHQTPGFDFNETFSPVIKPVTIRLILTLAVTYKWPVQQIDINNAFLNGVLQEEVYMTQ 1045

Query: 1240 PKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNV 1061
            PKGFE + + +LVC+L+K+LYGLKQAPRAW++KL   L+  GF   + D SL VH     
Sbjct: 1046 PKGFESSDK-SLVCKLHKSLYGLKQAPRAWYDKLTQTLLQMGFVKSRCDPSLLVHHQQGT 1104

Query: 1060 TIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKT-GLTLSQ 884
              YVLVYVDD++ITG+    +   I  LN  F+LK LG++ +FLG+Q+  +K+ GL L Q
Sbjct: 1105 CTYVLVYVDDILITGSAPHLIKDLIQKLNVQFALKQLGEVDYFLGIQVQHNKSGGLLLHQ 1164

Query: 883  QAYIKDILNRSNMSLASPMSTPADPYSKLQKAG-DPFSNPTLYRQVVGSLQYATITRPDI 707
              YIKD+L+++NM    P+ +P     +L K G D  ++ +LYR  VG+LQYAT+TRPDI
Sbjct: 1165 STYIKDLLSKTNMENCKPIGSPMVNSCRLSKFGTDAMTDASLYRSTVGALQYATLTRPDI 1224

Query: 706  SYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAK---GLHAFXXXXXXX 536
            +YSVN+VCQ+M  P   HW+AVKRILRYLKGT++H L   P+ +     L A+       
Sbjct: 1225 AYSVNKVCQFMSHPLESHWKAVKRILRYLKGTINHGLLLHPSTSSPPFSLRAYSDADWAT 1284

Query: 535  XXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLC 356
                  S  G  I+ G NL+SW+S+KQ++VARSSTEAEYRS+A TTAEL+W++ L+ +L 
Sbjct: 1285 DQDDRRSTSGSCIYFGPNLVSWSSKKQQLVARSSTEAEYRSMANTTAELLWIQSLLQELQ 1344

Query: 355  APLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIA 176
             P   +P L+CDN+ A+ +  NP++ +R+KH+ LD HF+RE+V S +L + HVS++DQ+A
Sbjct: 1345 VPFH-TPTLLCDNISAVALAHNPILHSRTKHLELDIHFVREKVTSKQLNVKHVSAIDQLA 1403

Query: 175  DIFTKPLAKDRVCFLRSKLQVRPDLE 98
            D  TKPL+      +R+KL+V P +E
Sbjct: 1404 DPLTKPLSPSNYAAIRTKLKVFPSIE 1429


>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
          Length = 1453

 Score =  801 bits (2068), Expect = 0.0
 Identities = 411/923 (44%), Positives = 577/923 (62%), Gaps = 7/923 (0%)
 Frame = -1

Query: 2845 LHGWHRRLAHPHEPILRRLVSTFQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKPF 2666
            L+ WH RL H H   ++ ++   ++P S+    + C  C + KSHRL+ P+S    +KPF
Sbjct: 540  LYKWHLRLGHAHNKAVQTVLQWCKVPYSNKNTVDFCIHCCIGKSHRLYSPLSDTVYTKPF 599

Query: 2665 ELIYSDVWGPAPVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFS 2486
            E+++ D+WGPAP  S   + Y++ F+D  TK+ WIYF+  KS+    F  F + ++ QF 
Sbjct: 600  EVVHCDLWGPAPFTSSYGYNYYISFVDTYTKYTWIYFLKHKSDALKAFTQFSSYIQNQFQ 659

Query: 2485 CDIKSVQSDWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQS 2306
              IK++QSDWGGE+R  +  L   GI HR++CPHT  QNG VER++R IVE GL LL+Q+
Sbjct: 660  TSIKALQSDWGGEFRPFTALLNTLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTLLSQA 719

Query: 2305 SLPQIFWEHAFKTATYLHNRTITPLL-TYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPY 2129
            SLP  +W+H+F  A YL N+  T  L +++SP+  L+   PDY+ +K+FGCLC+P+LRPY
Sbjct: 720  SLPLRYWDHSFTQAVYLINKLPTSALPSFKSPHHTLFNTQPDYSQVKIFGCLCFPHLRPY 779

Query: 2128 NPHKIDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNI 1949
            N +K+ FRS PCI++G S  HKG+ C   A   IY+S+ VIF E  FPY SL    S++ 
Sbjct: 780  NKNKLQFRSNPCIYLGVSPQHKGHKCLD-ANGRIYVSKDVIFHETQFPYLSLFPTSSTSC 838

Query: 1948 PATPDHNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXX 1769
              + +       +     S +                  +                    
Sbjct: 839  SNSENCLTQTYTSDTPTPSNSTYPPLTTPPQTSPLTITQINSLISQPINSSQTTGQHHSS 898

Query: 1768 XXXXXXIFVTNPTSIFRPAAN-NQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKH 1592
                    +  P+    P +N N HPM+TR +T +LKPK+F  +L    EP     A+  
Sbjct: 899  TSAKVQPVIQPPS----PTSNHNNHPMITRGKTGNLKPKTFTASL----EPTSVKNALND 950

Query: 1591 KCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGF 1412
              W  AM++EY ALM NNTWSLV+ P +   +GCKWI+R+K+  DG+I+++KARLVA+GF
Sbjct: 951  PQWLKAMQSEYKALMDNNTWSLVSLPPHKKAIGCKWIFRVKENPDGTINKYKARLVAKGF 1010

Query: 1411 SQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKG 1232
             Q  G D+ +TFSPVIKPTTIR++L++A++  W I+Q+D+NNAFLNG L EEVYM QP G
Sbjct: 1011 LQTPGFDFKETFSPVIKPTTIRVILTLAVTYKWSIQQIDVNNAFLNGLLQEEVYMSQPPG 1070

Query: 1231 FEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIY 1052
            FE T + +LVC+L+K+LYGLKQAPRAW+ +L   L+  GF   + D SL VH       Y
Sbjct: 1071 FEATDK-SLVCKLHKSLYGLKQAPRAWYERLTQALLQMGFVTSKCDPSLLVHHQQGACTY 1129

Query: 1051 VLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKT-GLTLSQQAY 875
            VL+YVDD++ITG+    +   I  LN  FSLK LG++ +FLG+++    + GL L+Q  Y
Sbjct: 1130 VLIYVDDILITGSAPHLIQDLIHKLNIQFSLKQLGEVDYFLGIEVHHMPSGGLLLNQSKY 1189

Query: 874  IKDILNRSNMSLASPMSTPADPYSKLQKAG-DPFSNPTLYRQVVGSLQYATITRPDISYS 698
            IKD+L+R+ M     + +P     +L K G D  S+P+LYR  VG+LQYAT+TRPDISYS
Sbjct: 1190 IKDLLSRTKMENCKAIGSPMVSSCRLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISYS 1249

Query: 697  VNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAK---GLHAFXXXXXXXXXX 527
            VN+VCQ+M +P   HW+AVKRILRYLKGT +H L   P+ +     L A+          
Sbjct: 1250 VNKVCQFMSNPLETHWKAVKRILRYLKGTSNHGLLLHPSPSSPPFSLRAYSDADWATDQD 1309

Query: 526  XXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPL 347
               S  G  I+ G+NLISW+S+KQ +VARSSTEAEYRS+A TTA+L+W++ L+S+L  P 
Sbjct: 1310 DRRSTSGSCIYFGSNLISWSSKKQPLVARSSTEAEYRSMANTTADLLWIQSLLSELHVPY 1369

Query: 346  TVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIF 167
              +P L+CDN+ A+ +  NPV+ +R+KHI LD HF+RE+V S KL + HV + DQ+AD  
Sbjct: 1370 H-TPTLLCDNLSAVSLAHNPVLHSRTKHIELDIHFVREKVLSKKLHVLHVPATDQLADPL 1428

Query: 166  TKPLAKDRVCFLRSKLQVRPDLE 98
            TKPL+      +R KL+V P  E
Sbjct: 1429 TKPLSPSNYGTIRCKLKVFPSHE 1451


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  753 bits (1943), Expect = 0.0
 Identities = 396/886 (44%), Positives = 555/886 (62%), Gaps = 36/886 (4%)
 Frame = -1

Query: 2635 APVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSVQSDW 2456
            AP+ S     Y+V F D  +++ W+Y +  KS+    FL F+   + QF C +K+ Q+DW
Sbjct: 386  APINSSYGFTYYVSFXDAYSRYTWVYXLKTKSQTREAFLMFKAQAELQFGCKLKTFQTDW 445

Query: 2455 GGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHA 2276
            GGE+R++ T+ + +GIIHR+SCPHT +QNG +ER++R IVE GL LLAQ+SLP  +W  A
Sbjct: 446  GGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDA 505

Query: 2275 FKTATYLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKP 2096
            F TA +L NR  T +L  + PY+ L+   P+Y+ LKVFGCLC+P+LRPYN HK+DFRS P
Sbjct: 506  FSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYSQLKVFGCLCFPHLRPYNKHKLDFRSSP 565

Query: 2095 CIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPS-------LIAEQSSNIPATP 1937
            C F+GYS+ HKGY C +     ++ISR V+FDE  FP+         +++  +  +P  P
Sbjct: 566  CTFLGYSSKHKGYKCLNQQ-GRMFISRSVVFDETRFPFADRLQKPVQIVSHSTVGLPCIP 624

Query: 1936 --------DHNPSIVV-TSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXX 1784
                      +PS+ + TS+ Q S  L                 ++ +F           
Sbjct: 625  LVKNLEPJSVSPSLSLPTSSAQSSHQLDENLGSDIRS-------IQXDFSNTDSSSTVPI 677

Query: 1783 XXXXXXXXXXXIFVTNPTSI--------------FRPAANNQHP--MVTRAQTNSLKPKS 1652
                            P +I               RP    Q P  MVTR++    KP  
Sbjct: 678  LXESASIXSSSNLYALPGTIPLSTNSDEPNESINTRPVTXPQQPHHMVTRSKNGIFKPXV 737

Query: 1651 FNTTLSSTVEPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRI 1472
            +   L+   EP  F +A+ H  W++AM  E+ ALMKN TWSLV+ PTN   VGC+W++++
Sbjct: 738  YTVDLN-VEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVSLPTNRTSVGCRWVFKL 796

Query: 1471 KKRADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDI 1292
            K+  DGS+ R+KARLVA+G+SQ  G D+++TFSPV+KPTTIR+VL+IA+S  W IRQLD+
Sbjct: 797  KRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVVLAIAVSQSWCIRQLDV 856

Query: 1291 NNAFLNGDLSEEVYMRQPKGFEDTT--RPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSN 1118
            NNAFLNG+L EEVYM QP GF+  T     LVC+L+KALYGLKQAPRAWF+KLK  L   
Sbjct: 857  NNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAPRAWFDKLKISLQQF 916

Query: 1117 GFKACQSDTSLFVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLS 938
            GF + +SD SLFV  T   +++VLVYVDD+++TG+  + +H+ I+ L   FSLKDLG+LS
Sbjct: 917  GFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISRLRGLFSLKDLGELS 976

Query: 937  FFLGLQITRSKT-GLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKLQKA-GDPFSNPT 764
            +FLG+++ ++   GL LSQ+ YI+D+L ++ M  A  + TP     KL    GDP  N  
Sbjct: 977  YFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGLKLSAGMGDPIDNVF 1036

Query: 763  LYRQVVGSLQYATITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKP 584
             YR VVG+LQY TITRP+I++SVN+VCQ+M  P + HW+AVKRILRYL GT    +  KP
Sbjct: 1037 EYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILRYLNGTTDLGIVLKP 1096

Query: 583  TKAKGLHAFXXXXXXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAY 404
            ++   L  F             S  G  +F G +L+SW+S+KQ   +RSSTEAEYRSLA 
Sbjct: 1097 SETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHTTSRSSTEAEYRSLAS 1156

Query: 403  TTAELMWLKLLISDLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVE 224
             T+E++WL+ L+S+L   +T+ P++ CDN+  + ++ NPV+ +R+KH+ LD +F+RE+V 
Sbjct: 1157 LTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSRTKHMELDLYFVREKVM 1216

Query: 223  SGKLQICHVSSVDQIADIFTKPLAKDRVCFLRSKLQVRPDLELARG 86
              KL + HV + DQ+AD+FTKPL+      LR KL V   L+L  G
Sbjct: 1217 ERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTV-ASLDLKNG 1261


>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  744 bits (1922), Expect = 0.0
 Identities = 410/935 (43%), Positives = 568/935 (60%), Gaps = 34/935 (3%)
 Frame = -1

Query: 2815 PHEPILRR---LVST-FQLPVSSNKFPNVCDSCQLAKSHRLHLPISHVSSSKPFELIYSD 2648
            PH P+ +    L ST  Q P+S  K  N   +    +S      +S + S+K F    S+
Sbjct: 135  PHLPLTKGPACLTSTAIQPPLSCLKNGNTSVNFSPYES------VSALVSNKVFSK--SN 186

Query: 2647 VWGPAPVCSINSHRYFVLFIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSV 2468
            +WGP+   S   + Y++ F+D CTKF W+YF+  KS+    F  F  +V+TQFS  IK++
Sbjct: 187  LWGPSHNVSHCGYTYYIAFVDACTKFTWLYFLKHKSDAVTAFTQFYNLVQTQFSVKIKAL 246

Query: 2467 QSDWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIF 2288
            QSD GGE+R +ST L   G+ HR +CPHT  QNG VERR+R IVE GL LLA +++P  F
Sbjct: 247  QSDGGGEFRPISTLLTQLGVKHRFTCPHTSHQNGTVERRHRSIVETGLTLLAHANMPLTF 306

Query: 2287 WEHAFKTATYLHNRTITPLL-TYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKID 2111
            W+H+F TA +L N   T  L  + SPYQ LY ++PDY  L+VFGC C+P+LRPYN HK++
Sbjct: 307  WDHSFTTAVHLLNYLPTASLRNFISPYQALYNQIPDYKSLRVFGCSCFPHLRPYNNHKLE 366

Query: 2110 FRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQ---------- 1961
             RS  C+++G S  HKGY C   A   +YIS+ V+F+E  FP+  L A            
Sbjct: 367  LRSTKCVYLGPSPQHKGYKCMT-ANGRVYISKDVVFNESEFPFSLLCASAPGSSSTTFGP 425

Query: 1960 --SSNIPAT--------PDHNPSIVV----TSNVQQSQNLXXXXXXXXXXXXXXXPIVEP 1823
              SS IP          P ++P  ++    T++  +S N                 +  P
Sbjct: 426  TYSSQIPQPLSLIPEPMPGNSPPSIIEHLATASNTESAN--------------PPNLDAP 471

Query: 1822 NFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSIFRPAANNQHPMVTRAQTNSLKPKSFNT 1643
            +                         V+  + +    + N+HPMVTR +T +LKPK F  
Sbjct: 472  SSSLITQPPVLPQTVSNLPLLSTLPVVSKASKVASHDSANKHPMVTRGKTGNLKPKVF-- 529

Query: 1642 TLSSTVEPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKR 1463
               +  EP    QA+    W  AMK EY ALMKN TWSLV  P +   +GCKW++RIK+ 
Sbjct: 530  --LAHSEPGTVKQALADPQWLAAMKCEYSALMKNETWSLVPLPAHRRAIGCKWVFRIKEN 587

Query: 1462 ADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNA 1283
             DGS++++KARLVA+GFSQE G DY +TFSPV+KP TIR++L++A+S  W I+Q+D+NNA
Sbjct: 588  PDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTIRIILTLAISFKWDIQQIDVNNA 647

Query: 1282 FLNGDLSEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKAC 1103
            FLNG L EEVYM QP GF  T +  LVC+L+KALYGLKQAPRAW+ +L   L+  GF A 
Sbjct: 648  FLNGILHEEVYMVQPPGFVSTDK-TLVCKLHKALYGLKQAPRAWYERLTQALLHFGFHAS 706

Query: 1102 QSDTSLFVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGL 923
            + D SLFV+   +VT+YVLVYVDD+++TG+    LH  I  LN  F+LK +G   +FLG+
Sbjct: 707  KCDPSLFVYNHKDVTLYVLVYVDDILLTGSSSALLHDLILKLNSQFALKHMGKPDYFLGI 766

Query: 922  QITRSKTG-LTLSQQAYIKDILNRSNMSLASPMSTPADPYSKLQKAG-DPFSNPTLYRQV 749
            ++     G + L+Q  YI+D+L+R+NM+ A  +STP     KL + G D   +P  YR +
Sbjct: 767  EVKHLHNGSILLTQSKYIRDLLHRANMAEAKGISTPMVSSLKLSRFGTDTLPDPHEYRSI 826

Query: 748  VGSLQYATITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAK- 572
            VG+LQY T+TRP+I++ VN++CQ++ +P   HWQAVKRILRYL  T H  L  +P+ A  
Sbjct: 827  VGALQYVTLTRPEIAFCVNKMCQFLANPLLSHWQAVKRILRYLLSTCHLGLLLQPSAAVS 886

Query: 571  --GLHAFXXXXXXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTT 398
               + A+             S  G  IF G NL+SW+++KQ +VARSS EAEYRS+A+TT
Sbjct: 887  KFSIRAYSDSDWASDLDDRRSTSGSCIFFGPNLVSWSAKKQSLVARSSAEAEYRSMAHTT 946

Query: 397  AELMWLKLLISDLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESG 218
            +EL+W++ L+ DL  P+  +P+L+CDN+ A+ +  NPV+  R+KH+ LD HF+RE+V + 
Sbjct: 947  SELLWIQSLLVDLKIPIH-TPVLLCDNISAVMIAHNPVLHARTKHLELDIHFVRERVLAK 1005

Query: 217  KLQICHVSSVDQIADIFTKPLAKDRVCFLRSKLQV 113
             L I HV  VDQIAD  TKPL   R   LR KL+V
Sbjct: 1006 DLSIQHVPGVDQIADALTKPLPTSRFLTLRDKLKV 1040


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  699 bits (1804), Expect = 0.0
 Identities = 357/787 (45%), Positives = 508/787 (64%), Gaps = 4/787 (0%)
 Frame = -1

Query: 2434 STFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAFKTATYL 2255
            S++L  HGI  + SCP+T EQNG  ER+ R I+E GLALLA +SLP  FW +AF T  +L
Sbjct: 464  SSYLATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATASLPFKFWLYAFHTTIFL 523

Query: 2254 HNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGYS 2075
             NR  T +L Y+SP+Q L+ K P+Y   K+FGCLCYPY+RPYN +K+ +RS  C+F+GYS
Sbjct: 524  INRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLGYS 583

Query: 2074 ASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPATPDHNPSIVVTSNVQQ 1895
            ++HKGY+C +  T  +Y++RHV+F E VFP+ S   +QSS++   P   P+ +  S+   
Sbjct: 584  SNHKGYMCLNPLTGRLYVTRHVVFHETVFPFQST-PDQSSSVVTIP--TPAFLPCSSPPV 640

Query: 1894 SQ---NLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSI 1724
            S    +                 I  P+                        F    TS 
Sbjct: 641  SSLRSHTTPSTSSPPLTNMPSSTISLPDL-------------------IQVPFADISTS- 680

Query: 1723 FRPAANNQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAEYDALMK 1544
              P   NQHPMVTRA+    K K + ++  S  EP  F+QAVK   W  AM+ E+ AL +
Sbjct: 681  -EPHPTNQHPMVTRAKNGISKKKVYFSSHIS--EPTTFTQAVKDSNWVLAMEKEFSALQR 737

Query: 1543 NNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVI 1364
            NNTW LV  P+N NI+GCKW+Y++K + DG++DR+KARLVAQGF+Q  G++YF+TFSPV+
Sbjct: 738  NNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLBYFETFSPVV 797

Query: 1363 KPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLVCRLNKA 1184
            K +TIR++L++ALS  W + QLD+ NAFL+GDL E V+M+QP GF ++  P+ VC+LNKA
Sbjct: 798  KASTIRIILAVALSFNWSVHQLDVQNAFLHGDLEEHVFMQQPPGFINSQYPSHVCKLNKA 857

Query: 1183 LYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLIITGTDDK 1004
            LYGLKQAPRAW+NKL T L+  GF+A ++D+S+F+H + +  + +L+YVDD+++TG+   
Sbjct: 858  LYGLKQAPRAWYNKLSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSA 917

Query: 1003 YLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKTGLTLSQQAYIKDILNRSNMSLASPMS 824
             +  FI  LN +F+L+DLG +++FLG+++ RS T   LSQ  Y +D+L+R+ M  + P +
Sbjct: 918  QVSSFITRLNSSFALRDLGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPAT 977

Query: 823  TPADPYSKLQKA-GDPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHSPTNLHWQ 647
            TP      L    G+PFS+ TLYR  VG+LQY T+TRPDIS++VN+ CQ+M +PT  HW 
Sbjct: 978  TPGLLGQTLSHLDGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWL 1037

Query: 646  AVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXXXXXXXXXXXSQYGFAIFHGANLISWT 467
            AVKRILRYLKGTL + +  + + +  +H +             S  G+ IF G NL+SW+
Sbjct: 1038 AVKRILRYLKGTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWS 1097

Query: 466  SRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDNVGAIFMTKNP 287
            S KQKVV+RSS E+EYR+LA  T+E++W++ ++ +LC   +  PLL CDN  A  +  NP
Sbjct: 1098 SNKQKVVSRSSAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANP 1157

Query: 286  VISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVCFLRSKLQVRP 107
            V   R+KHI +D HFIR+ V   +L I ++ S +Q+ADIFTK ++  +    R+KL V P
Sbjct: 1158 VFHARTKHIEMDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSVVP 1217

Query: 106  DLELARG 86
                 RG
Sbjct: 1218 SPVSLRG 1224


>emb|CAN71108.1| hypothetical protein VITISV_001478 [Vitis vinifera]
          Length = 1354

 Score =  700 bits (1806), Expect = 0.0
 Identities = 386/834 (46%), Positives = 513/834 (61%), Gaps = 29/834 (3%)
 Frame = -1

Query: 2533 YNLFLNFRTMVKTQFSCDIKSVQSDWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVER 2354
            + +F  ++T+V+  FS  I ++ SD GGEY  +  +L    I H  + PHT E NG  ER
Sbjct: 542  HEVFKRYKTIVENYFSKKIITLYSDNGGEYMVLKDYLSLXXISHFTTPPHTPEHNGYSER 601

Query: 2353 RNRVIVEKGLALLAQSSLPQIFWEHAFKTATYLHNRTITPLLTYESPYQHLYQKVPDYAF 2174
            R+R IVE GL LL+ +SLP  F  HAF TA YL NR  T  L   SP++ ++ K P+Y+ 
Sbjct: 602  RHRHIVETGLTLLSHASLPNTFXPHAFATAVYLINRLPTTTLNLSSPFELIFHKSPNYSR 661

Query: 2173 LKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDED 1994
            LKVFGCLCYP+LRPY  HK+   SKPC+F+GYS S   YLC   +TS +Y+SRHV F E 
Sbjct: 662  LKVFGCLCYPWLRPYXTHKLTPXSKPCVFLGYSLSQSAYLCLDXSTSKLYVSRHVQFVES 721

Query: 1993 VFPYPSLIAEQ--------SSNIP-----ATPDHNPSIVVTSNVQQSQNLXXXXXXXXXX 1853
            VFPY SL            S+ IP     +TP  +    +T +   SQ L          
Sbjct: 722  VFPYTSLHTTLPRPNSTTISTWIPXILSVSTPTSSQQEAITPSAASSQGLP--------- 772

Query: 1852 XXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSIFRPAANNQHPMVTRAQT 1673
                  + E                              P  +  P    QH M TRA+ 
Sbjct: 773  ------LFETTSPPAAPFPHQASSAPQPSPQPSLTTTEPPIPVPPPT---QHRMTTRAKN 823

Query: 1672 NSLKP------KSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPT 1511
            N  KP       +   T  +T  P   SQA+K + W+ AM  EYDAL++N TW LV    
Sbjct: 824  NITKPIQKLNLHTHKPTFQTTT-PTSISQALKDQNWRQAMSDEYDALVRNGTWELVPPED 882

Query: 1510 NTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSI 1331
             TN+VGCKWI+RIK+ +DGSIDR+KARLVA+GF Q  GVDY +TFSPV+KPTT+RLVLSI
Sbjct: 883  ITNLVGCKWIFRIKRNSDGSIDRYKARLVAKGFHQRPGVDYHETFSPVVKPTTVRLVLSI 942

Query: 1330 ALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAW 1151
            A+SNGW +RQLD+NNAFL G LSE V+M QP GF D+  P+ VC+L+KA+YGLKQAPRAW
Sbjct: 943  AVSNGWSLRQLDVNNAFLQGRLSENVFMAQPPGFVDSDHPSYVCKLHKAIYGLKQAPRAW 1002

Query: 1150 FNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNK 971
            +++L+ +L+++GFK   SDTSLFV  + N  +Y+LVYVDD+I+TG+ D  + +F+  L +
Sbjct: 1003 YHELRQFLLTSGFKNSHSDTSLFVLRSSNHVVYLLVYVDDIILTGSSDTLVSQFVDYLAQ 1062

Query: 970  TFSLKDLGDLSFFLGLQITRSKTGLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKL-- 797
             FSLKDL          +   + G+ LSQ+ YI+D+L R+NM+ A P+ TP    S    
Sbjct: 1063 XFSLKDL----------VVPHRLGILLSQRRYIQDLLIRTNMADAKPVLTPLPTSSTAIS 1112

Query: 796  QKAGDPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLK 617
              +G P S+PT YR  VGSLQY ++TRPDIS++VNR+ Q+MH PT+ HW  VKRILRYL 
Sbjct: 1113 LTSGTPLSDPTPYRAAVGSLQYLSLTRPDISFAVNRMAQFMHQPTSEHWVLVKRILRYLC 1172

Query: 616  GTLHH-CLHFKPTK------AKGLHAFXXXXXXXXXXXXXSQYGFAIFHGANLISWTSRK 458
            GTL    L ++ +       +  LHAF             S   + ++ G NL+SW+S+K
Sbjct: 1173 GTLDKGLLLYRDSSIPLHGFSDSLHAFSDADWAGNKDDYSSTSAYLVYLGRNLVSWSSKK 1232

Query: 457  QKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDNVGAIFMTKNPVIS 278
            Q+ VARSSTEAEYRS+A T AEL W+  L+SDL    T SP++ CDNVGA  ++ NP+  
Sbjct: 1233 QQTVARSSTEAEYRSVAATAAELCWVGSLLSDLGIKFTTSPVVYCDNVGATQLSSNPIFH 1292

Query: 277  TRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPL-AKDRVCFLRSKL 119
            +R KH+A+D+HFIR+QV+SG L++ HVSS DQ+AD+ TKPL    +   LR K+
Sbjct: 1293 SRMKHVAIDYHFIRDQVQSGLLRVAHVSSADQLADLLTKPLPTYSQFLLLRDKI 1346


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  678 bits (1749), Expect = 0.0
 Identities = 360/751 (47%), Positives = 483/751 (64%), Gaps = 10/751 (1%)
 Frame = -1

Query: 2317 LAQSSLPQIFWEHAFKTATYLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYL 2138
            +AQS LP  +W +AF+TA YL N     LL ++SP Q L+ K+P+Y  L+VFGCLC+P L
Sbjct: 1    MAQSFLPSKYWTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSL 60

Query: 2137 RPYNPHKIDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQS 1958
            RPY  HK+ +RS  C+F+GY+ +HKGYLC   +T+ IYISR+VIF E  FP+      QS
Sbjct: 61   RPYTQHKLCYRSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPF------QS 114

Query: 1957 SNIPATPD-HNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXX 1781
            S+ P++P  H PS   T  +  S +L                 + P              
Sbjct: 115  SSPPSSPSPHLPSS--TPALINSPSLSAPSSPAVSSPIITSDSIPP-------------- 158

Query: 1780 XXXXXXXXXXIFVTNPTSIFRPAAN-------NQHPMVTRAQTNSLKPKSFNTTLSSTVE 1622
                        +  P +   PAA        N HPMVTRA++   K +SF   +  T E
Sbjct: 159  -----------LIPVPFATSSPAAPSPPPLPLNTHPMVTRAKSGIHKKRSF--IVQHTTE 205

Query: 1621 PRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDR 1442
            PR +SQA K+  W  AM +EY AL++NNTWSLV  P++ +IVGC+WIY++K R DGSIDR
Sbjct: 206  PRTYSQAFKNDSWVQAMNSEYQALLRNNTWSLVPPPSSAHIVGCRWIYKLKYRPDGSIDR 265

Query: 1441 HKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLS 1262
            HKARLVAQGF+Q  G+DYFDTFSPV+KP TIRL+L++A+S  W +RQLD+ N FLNGDL 
Sbjct: 266  HKARLVAQGFTQTPGIDYFDTFSPVVKPCTIRLILALAVSFQWSVRQLDVENGFLNGDLE 325

Query: 1261 EEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLF 1082
            EEV+M QP+GF + T P  VC+L+KALYGLKQAPRAWF KL+  L+  GF++ ++DTSLF
Sbjct: 326  EEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDYGFQSSRADTSLF 385

Query: 1081 VHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKT 902
            +  T    + +LVYVDD+++TG++   +  FI+ L   F+L+DLG LS+FLG+Q  +  +
Sbjct: 386  IFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLSYFLGIQAQQLGS 445

Query: 901  GLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKL-QKAGDPFSNPTLYRQVVGSLQYAT 725
             L L+Q  YI D+LNR+ M  + P  TP      L Q  G   S+P+ YR+ VG+LQY T
Sbjct: 446  VLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSEYRRTVGALQYVT 505

Query: 724  ITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXX 545
            +TRPDI+++VN+ CQ+M  P+++HW AVKRILRYLKGT+H  LHF+P  +     +    
Sbjct: 506  LTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASMEXQGYSDAD 565

Query: 544  XXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLIS 365
                     S  G+ +F G+NLISW+S KQ++V++SS E+EYR L   TAEL+W++ L+ 
Sbjct: 566  WASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGLVSLTAELVWIQSLLQ 625

Query: 364  DLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVD 185
            +LC P T  P+L CDN  A  +  NPV  +RSKHI LD HFIRE+V   +LQIC+V S D
Sbjct: 626  ELCLP-TSPPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREKVLRQELQICYVPSGD 684

Query: 184  QIADIFTKPLAKDRVCFLRSKLQVR-PDLEL 95
            Q+ADIFTK L   + C LRSKL V  P L L
Sbjct: 685  QLADIFTKHLPITQFCNLRSKLTVTYPPLSL 715


>gb|PNX94124.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1240

 Score =  690 bits (1781), Expect = 0.0
 Identities = 359/820 (43%), Positives = 511/820 (62%), Gaps = 28/820 (3%)
 Frame = -1

Query: 2461 DWGGEYRNVSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWE 2282
            D GGE+  + TFL  HGI H  + PHT E N   ERR+R IVE G ALL  ++LP  FW 
Sbjct: 421  DNGGEFIKLKTFLTTHGISHYTTPPHTPELNALAERRHRHIVETGKALLHTANLPASFWS 480

Query: 2281 HAFKTATYLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRS 2102
            HAF+TA YL NR  TP L  +SP+Q L+Q  P+   L  FGCLC+P+LRPY  +K+  RS
Sbjct: 481  HAFRTAVYLINRLPTPTLNMKSPFQILHQTKPNPLHLHSFGCLCFPWLRPYTSNKLQPRS 540

Query: 2101 KPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPY-------------PSLIAEQ 1961
            +PCIF+GY+ +   Y C    T+ IY SRHV F + +FPY             P +  + 
Sbjct: 541  QPCIFVGYADTQYAYHCLDPTTNKIYTSRHVKFYDHIFPYNTYRPSHNPPSNSPIITQQP 600

Query: 1960 SSNIPATP--DHNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEP--------NFEX 1811
               + + P  +H P+I+  +     +                 P++          N E 
Sbjct: 601  LHTLISIPNQEHPPNIIQNNGTPSIETTPLTEHSTSHTPTISSPLITEQSNPCLVSNEES 660

Query: 1810 XXXXXXXXXXXXXXXXXXXXIFVTNPTSIFRPAANNQHPMVTRAQTNSLKPKS-FNTT-- 1640
                                    NP +   P +      VTR+Q N  KPK  F  T  
Sbjct: 661  PLTPNTSSGNDQNISPLVQIHVPINPPAAPIPPSRP----VTRSQNNIFKPKRLFQATKH 716

Query: 1639 -LSSTVEPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKR 1463
             L+  VEP    +A+KH  W+ A+  E+DAL++N TWSLV  P +TNIVGCKW++RIK++
Sbjct: 717  PLAENVEPSSIKEAMKHDHWRKAIYEEFDALVRNGTWSLVPPPKDTNIVGCKWLFRIKRQ 776

Query: 1462 ADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNA 1283
            ADGSIDR+KARLVA+GF+Q  GVD+ +TF+PV++P TI++++++AL + W++ QLD+NNA
Sbjct: 777  ADGSIDRYKARLVAKGFTQRHGVDFHETFAPVVRPQTIKIIITLALGHKWKMHQLDVNNA 836

Query: 1282 FLNGDLSEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKAC 1103
            FL G L E+VYM QP G +D+  P+ VC+L+KA+YGL+QAPRAW + LK + VS GF   
Sbjct: 837  FLQGSLKEQVYMTQPPGLKDSQHPHYVCKLHKAIYGLRQAPRAWHDALKNFTVSYGFLCS 896

Query: 1102 QSDTSLFVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGL 923
            +SD SLF++    +  Y LVYVDDL++TG +D ++H+FI++L+K FSLK++G   +FLG+
Sbjct: 897  KSDPSLFIYAAEGILAYFLVYVDDLLLTGNNDHFMHQFISNLSKKFSLKNMGAPHYFLGI 956

Query: 922  QITRSKTGLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKLQ-KAGDPFSNPTLYRQVV 746
            +I  + +G+ LSQ  +++DIL R +M  A P  TP    + LQ   G P ++ T YR ++
Sbjct: 957  EIIPTTSGILLSQHKHVRDILQRFDMEGAKPSPTPLSATATLQLHDGTPSTDATEYRSIL 1016

Query: 745  GSLQYATITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGL 566
            G+LQY  +TRPD+S+S+N++ Q+MH PT LH Q +KRILRYLK T++H +  +PT +  L
Sbjct: 1017 GALQYLNLTRPDLSFSINKLAQFMHKPTTLHLQHLKRILRYLKTTINHGILLQPTTSHNL 1076

Query: 565  HAFXXXXXXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELM 386
             A+             S   + IF G N ISW S+KQ+ VARSSTEAEYR++A TTAE+M
Sbjct: 1077 IAYSDADWGGNPDDRTSTSAYIIFLGCNPISWLSKKQRTVARSSTEAEYRAVATTTAEVM 1136

Query: 385  WLKLLISDLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQI 206
            WL  L+S+L  P+   P ++CDNVGA ++  NPV+ +R KHI++D+HF+REQV++ +LQ+
Sbjct: 1137 WLSNLLSELQVPMANPPKILCDNVGATYLCANPVLHSRMKHISMDYHFVREQVQAKQLQV 1196

Query: 205  CHVSSVDQIADIFTKPLAKDRVCFLRSKLQVRPDLELARG 86
             HVS+ DQ+ADI TKPL   +   + SK++V     + RG
Sbjct: 1197 SHVSTKDQLADILTKPLGTAKFNDISSKIKVTNGNFILRG 1236


>gb|OTG14868.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1386

 Score =  689 bits (1779), Expect = 0.0
 Identities = 402/993 (40%), Positives = 558/993 (56%), Gaps = 40/993 (4%)
 Frame = -1

Query: 2944 QTILRGDKHHGLYRLPP--HSFRQSPRAFHSSRISLHGWHRRLAHPHEPILRRLVSTFQL 2771
            Q + RG   +GLY L P  H+   S       + S   WH RL H H  ++  L     L
Sbjct: 400  QVLARGRCENGLYILQPGHHALVSSSSR---PKASFEVWHSRLGHVHFDVISILQKLGIL 456

Query: 2770 PVSSN-KFPNVCDSCQLAKSHRLHLPISHVSSSKPFELIYSDVWGPAPVCSINSHRYFVL 2594
             ++S    P  C  CQLAKS RL   +++  +  P +LI+ D+WGP+PV S++++RY+V 
Sbjct: 457  SITSLLPKPVTCRPCQLAKSQRLPFELNNKRALHPLDLIHCDLWGPSPVVSVDNYRYYVA 516

Query: 2593 FIDDCTKFVWIYFMSQKSEVYNLFLNFRTMVKTQFSCDIKSVQSDWGGEY--RNVSTFLK 2420
            F+DD ++F WIY +  KSE Y +   F   V+TQFS  IK  QSD G E+   NV +  +
Sbjct: 517  FVDDHSRFCWIYPLRLKSEFYKVLTIFMKFVQTQFSRKIKVFQSDGGTEFVNHNVRSLFE 576

Query: 2419 NHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAFKTATYLHNRTI 2240
             +G  HR+SCP+T +QNG VER++R IVE GLA++  + LP  FW  AF +A Y+ NR  
Sbjct: 577  ENGTFHRLSCPYTPQQNGRVERKHRHIVETGLAMMFNAKLPSKFWVDAFSSAVYIINRLP 636

Query: 2239 TP---------LLTYESPYQHLYQK--------VPDYAFLKV----FGCLCYPYLRPYNP 2123
            TP         +L  E+P  ++++         + DY+  K+      C+   Y   Y  
Sbjct: 637  TPLLNGKSPFEVLFSETPNYNVFRAFGCRVFPYLRDYSEHKLAPRSIPCIFIGYSPTYKG 696

Query: 2122 HK-IDFRSKPCIFIGYSASHKGYLCYHYATSTIYISRHVI--FDEDVFPYPSLIAEQSSN 1952
            ++ +D  S       ++  ++    +H  T     S   +  FDED F  P     +   
Sbjct: 697  YRCLDPTSSRVYITRHARFNENIFPFHGTTDNQPFSTLPLTSFDEDTFFTPHTHCPKP-- 754

Query: 1951 IPATPDHNPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXX 1772
               TP   P+  +T                        P   PN                
Sbjct: 755  ---TPTPTPTPNLTKTPCHLCMDFPPPPQPIPETTPSSPPPSPNNSTTPNSPLSPHTSTS 811

Query: 1771 XXXXXXXIFVTNPTSIFRPAANNQHPMVTRAQTNSLKPKSF-----------NTTLSSTV 1625
                      T P     P     HPM+TRA+    +P+             +  L ++ 
Sbjct: 812  PTTDISSPIPTPPPP--PPPPLPTHPMITRAKAGVFRPRHIADLSHVTRHPLHQALFASN 869

Query: 1624 EPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSID 1445
            +P+ F  A+K   W  AM  E DAL KNNTWSLV  P N ++VG KW++R K  +DGS++
Sbjct: 870  DPKGFKTAIKDAKWSSAMHKELDALYKNNTWSLVPRPVNRHVVGSKWLFRTKYHSDGSVE 929

Query: 1444 RHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDL 1265
            RHKARLVAQGFSQ  G+DY  TFSPV+K +T+R++LS+A+ N WR+ QLD+NNAFL+G L
Sbjct: 930  RHKARLVAQGFSQFPGIDYSHTFSPVVKASTVRIILSLAILNDWRLHQLDVNNAFLHGHL 989

Query: 1264 SEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSL 1085
            +E VYM QP GF +   PN VC+LNKALYGLKQAPRAWF++L T+L+SNGFK  ++D SL
Sbjct: 990  NECVYMEQPPGFINPNFPNHVCKLNKALYGLKQAPRAWFHRLSTFLISNGFKCSRADPSL 1049

Query: 1084 FVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSK 905
            F+    N  +Y+LVYVDDLI+TG  D  L  FI  L+  F++KDLG+L++FLGL++T + 
Sbjct: 1050 FIFKRDNCIMYLLVYVDDLILTGNQDNVLRSFINRLHNEFAIKDLGELNYFLGLEVTYTS 1109

Query: 904  TGLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKLQKAGDPFSNPTLYRQVVGSLQYAT 725
             GL L+Q  Y  DIL R+ M  A P +TP         +G+ FS+PT YR +VG+LQY T
Sbjct: 1110 NGLFLNQSKYASDILVRACMMDAKPATTPLATNVTFSNSGELFSDPTQYRSIVGALQYLT 1169

Query: 724  ITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXX 545
            ITRPDISY+VN+V Q++H+PT  H+Q VKRILRY+KGTL   L F       L  F    
Sbjct: 1170 ITRPDISYAVNQVSQFLHAPTIDHFQGVKRILRYIKGTLSFGLTFSKPSQNTLIGFSDAD 1229

Query: 544  XXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLIS 365
                     S YG++IF G NL+SW+++KQ  V+RSS E+EYR++A T AE++W+  L+ 
Sbjct: 1230 WARCLETRRSTYGYSIFLGGNLVSWSAKKQPTVSRSSCESEYRAMANTAAEIIWITHLLR 1289

Query: 364  DLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVD 185
            +L A     P ++CDN  AIF+T+NPV   R KH+ +D+HFIRE V +GKL    + S  
Sbjct: 1290 ELHALPASRPTILCDNRSAIFLTQNPVSHKRVKHLDIDYHFIRELVSAGKLHTRFIPSKL 1349

Query: 184  QIADIFTKPLAKDRVCFLRSKLQVRPDLELARG 86
            Q+ADIFTK L   +    R  L++ P     RG
Sbjct: 1350 QVADIFTKSLPYPQFDTFRKMLRLGPPPSRLRG 1382


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score =  681 bits (1758), Expect = 0.0
 Identities = 362/789 (45%), Positives = 496/789 (62%), Gaps = 13/789 (1%)
 Frame = -1

Query: 2434 STFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIFWEHAFKTATYL 2255
            +T L   GI HR++CPHT  QNG VER++R IVE GL LL+Q+SLP  +W+H+F  A YL
Sbjct: 422  TTLLNTLGIQHRLTCPHTSHQNGTVERKHRQIVEMGLTLLSQASLPLKYWDHSFTQAVYL 481

Query: 2254 HNRTITPLLT-YESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGY 2078
             N+  T  LT ++SP+  L+   PDY+ LK+FGCLC+P+LRPYN HK+ FRS PC+++G 
Sbjct: 482  INKLPTSALTSFKSPHHALFNTQPDYSQLKIFGCLCFPHLRPYNNHKLQFRSNPCVYLGV 541

Query: 2077 SASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLI------AEQSSNIPATPDHNPSIV 1916
            S  HKG+ C   A   IY+S+ VIF E  FPY SL          S N P T DH     
Sbjct: 542  SPQHKGHKCLD-ANGRIYVSKDVIFHETQFPYLSLFPASSTSCSNSENYP-THDHTSDTT 599

Query: 1915 VTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTN 1736
            +  N                       I +P                          + N
Sbjct: 600  LPINSTHPPLTIPQQTSPLTVTQINSIISQPITPSHTTSQHQTSSP-----------IKN 648

Query: 1735 PTSIFRP-AANNQHPMVTRAQTNSLKPKSFNTTLSSTVEPRLFSQAVKHKCWQDAMKAEY 1559
               I  P   +N HPMVTR +T +LKPK     L++++EP     A+    W  AM++EY
Sbjct: 649  QPVIQPPHPISNNHPMVTRGKTGNLKPK----VLTASIEPTSVRAALNDPQWLKAMQSEY 704

Query: 1558 DALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFDT 1379
             ALM NNTWSLV+ P +   +GCKWI+R+K+  DG+++++KARLVA+GF Q  G D+ +T
Sbjct: 705  KALMDNNTWSLVSLPPHKKAIGCKWIFRVKENPDGTVNKYKARLVAKGFLQTPGFDFKET 764

Query: 1378 FSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLVC 1199
            FSPVIKPTTIR++L++A++  W ++Q+D+NNAFLNG L EEVYM QP GFE   + +LVC
Sbjct: 765  FSPVIKPTTIRIILTLAVTYKWAVQQIDVNNAFLNGLLQEEVYMSQPSGFEVADK-SLVC 823

Query: 1198 RLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLIIT 1019
            +L+K+LYGLKQAPRAW+ +L   L+  GF A + D SL +H       YVL+YVDD++IT
Sbjct: 824  KLHKSLYGLKQAPRAWYERLTQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILIT 883

Query: 1018 GTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKT-GLTLSQQAYIKDILNRSNMS 842
            G+    +   I  LN  FSLK LG++ +FLG+++    + GL L+Q  YIKD+L+R+ M 
Sbjct: 884  GSAPHLIQDLIHKLNIQFSLKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKME 943

Query: 841  LASPMSTPADPYSKLQKAG-DPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHSP 665
                + +P     +L K G D  S+P+LYR  VG+LQYAT+TRPDISYSVN+VCQ+M +P
Sbjct: 944  NCKAIGSPMVSSCRLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMANP 1003

Query: 664  TNLHWQAVKRILRYLKGTLHHCLHFKPTKAK---GLHAFXXXXXXXXXXXXXSQYGFAIF 494
               HW+AVKRILRYLKGT +H L   P+ +     L A+             S  G  IF
Sbjct: 1004 LETHWKAVKRILRYLKGTSNHGLLIHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIF 1063

Query: 493  HGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDNV 314
             G+NL+SW S+KQ +VARSSTEAEYRS+A TTA+LMW++ L++++  P   +P L+CDN+
Sbjct: 1064 FGSNLVSWGSKKQPLVARSSTEAEYRSMANTTADLMWIQSLLNEIHVPYH-TPTLLCDNL 1122

Query: 313  GAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVCF 134
             A+ +  NPV+ +R+KHI LD HF+RE+V + KL + HV ++DQ+AD  TKPL+      
Sbjct: 1123 SAVSLAHNPVLHSRTKHIELDIHFVREKVLAKKLHVLHVPAIDQLADPLTKPLSPSNYAT 1182

Query: 133  LRSKLQVRP 107
            +RSKL+V P
Sbjct: 1183 IRSKLKVFP 1191


>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
          Length = 1361

 Score =  681 bits (1757), Expect = 0.0
 Identities = 359/810 (44%), Positives = 493/810 (60%), Gaps = 21/810 (2%)
 Frame = -1

Query: 2461 DWGGEYRN--VSTFLKNHGIIHRVSCPHTQEQNGAVERRNRVIVEKGLALLAQSSLPQIF 2288
            D G E+ N    + L + GI  R++CP+T  QNG VER++R + E GL L+  + +P   
Sbjct: 545  DGGTEFTNNKFRSHLHSCGIDLRLACPYTPSQNGIVERKHRYVTEIGLTLMFHARVPLSL 604

Query: 2287 WEHAFKTATYLHNRTITPLLTYESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDF 2108
            W+ AF TA +L NR   P L  ++PY+ L+ K PDY+ L+ FGCLC+PYLR Y+P+K+  
Sbjct: 605  WDEAFSTAVFLINRLPPPSLAGKTPYELLFGKQPDYSMLRTFGCLCFPYLRDYSPNKLSP 664

Query: 2107 RSKPCIFIGYSASHKGYLCYHYATSTIYISRHVIFDEDVFPYPSLIAEQSSNIPATPDH- 1931
            +S PC+F+GYS  HKG+ C    T  +Y+SRHV F E  FPY     +   N+P+  D+ 
Sbjct: 665  KSTPCVFLGYSTLHKGFRCLDRKTHRVYVSRHVQFYEHTFPYNG---DSVQNLPSNIDYI 721

Query: 1930 -----NPSIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXX 1766
                    +  +SNV  S +L                   P+                  
Sbjct: 722  HFSESQECVSSSSNVSTSDSLPSPSFSNSLCLPCNDI---PHLSSTSSPGLQVPLDEDSL 778

Query: 1765 XXXXXIFVTNPTSIFRP--AANNQHPMVTRAQTNSLKPKSFNTTLSSTV----------- 1625
                    T P+ I        + HPM+TR +    KP+ ++    S+            
Sbjct: 779  LDSVATDSTTPSPISSSPRVTTSNHPMITRGKAGIFKPRLYHAMHISSSSQLFQAFLALK 838

Query: 1624 EPRLFSQAVKHKCWQDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSID 1445
            EPR F  A KH  W  AM  E  AL KN+TW LV  P + N+VGC+WI++ K  +DGSI+
Sbjct: 839  EPRGFKSAAKHPEWLSAMDDEIHALKKNDTWVLVPRPQHHNVVGCRWIFKTKLHSDGSIE 898

Query: 1444 RHKARLVAQGFSQEEGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDL 1265
            RHKARLVAQGFSQ  G+D+ DTFSPV++P T+R++LS+A+++GWR+ QLD+ NAFL+G L
Sbjct: 899  RHKARLVAQGFSQVHGLDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNAFLHGFL 958

Query: 1264 SEEVYMRQPKGFEDTTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSL 1085
            +EEVYM QP G+ D   P  VCRL +ALYGLKQAPRAWF++  ++L+ +GF + Q+D+SL
Sbjct: 959  NEEVYMEQPPGYTDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSSQADSSL 1018

Query: 1084 FVHITPNVTIYVLVYVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSK 905
            F + +   T+Y+L+YVDD+IITG+    +H FI  L+  FS+KDLGDL +FLG+++  ++
Sbjct: 1019 FFYHSSLGTVYLLLYVDDMIITGSTPSLVHTFITRLSNEFSMKDLGDLHYFLGVEVQANE 1078

Query: 904  TGLTLSQQAYIKDILNRSNMSLASPMSTPADPYSKLQKAGDPFSNPTLYRQVVGSLQYAT 725
             GL LSQ  Y  D+L R++M  A P+STP      L   G  FS+PTL+R + G+LQY T
Sbjct: 1079 KGLFLSQTKYALDLLQRASMIDAKPISTPFVVGQHLSAEGTLFSDPTLFRSLAGALQYLT 1138

Query: 724  ITRPDISYSVNRVCQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXX 545
            ITRPD+S+SVN + Q+MH+PT  H++A+KRILRY+KGT HH L       + L  +    
Sbjct: 1139 ITRPDLSFSVNSIFQFMHAPTEDHFRALKRILRYVKGTAHHGLQLHKQSTRDLLGYSDAD 1198

Query: 544  XXXXXXXXXSQYGFAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLIS 365
                     S  G+AIF GANLISW+S+KQ  V+RSS EAEYRSLA  TA++ W+  L+ 
Sbjct: 1199 WAGCPDTRRSTTGYAIFFGANLISWSSKKQSTVSRSSAEAEYRSLAVATADIAWIIQLLR 1258

Query: 364  DLCAPLTVSPLLICDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVD 185
            DL   L+V P ++CDN  AIFM  NPV   RSKHIA+D+HF+RE V+ G L+I  V S  
Sbjct: 1259 DLHVTLSVPPKILCDNQSAIFMAVNPVTRPRSKHIAIDYHFVRELVDKGTLKIDFVPSHL 1318

Query: 184  QIADIFTKPLAKDRVCFLRSKLQVRPDLEL 95
            Q+AD  TK + K +    RSKL V P   L
Sbjct: 1319 QLADSLTKGVTKPQFYLFRSKLSVLPSTTL 1348


>gb|PNX97009.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 716

 Score =  602 bits (1552), Expect = 0.0
 Identities = 317/740 (42%), Positives = 454/740 (61%), Gaps = 28/740 (3%)
 Frame = -1

Query: 2221 ESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGYSASHKGYLCYHY 2042
            +SPYQ L+ +  +   L  FGCLC+P+L+PY  +K+  +S PC+F+GYS S   Y C   
Sbjct: 2    QSPYQTLHHQTHNIHHLHSFGCLCFPWLKPYTNNKLQPKSIPCVFVGYSPSQYAYRCLDP 61

Query: 2041 ATSTIYISRHVIFDEDVFPYPSLIAEQSSNIP---------------------ATPDHNP 1925
             T+ IY SRHV+F ++ FPY SL   +    P                     ATP H P
Sbjct: 62   TTNKIYTSRHVVFHDNHFPYISLTKLKPHTSPYSQPISSSPHTIIPINLPHTNATPPHEP 121

Query: 1924 SIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIF 1745
                TSN    +                  I  P+                         
Sbjct: 122  PSPSTSNAIPQE---APLLSDSTSGNGSTTIPSPS------------------------- 153

Query: 1744 VTNPTSIFRPAANNQH-PMVTRAQTNSLKP--KSFNTTLS---STVEPRLFSQAVKHKCW 1583
            +T+     + A N+ H  +VTR++ N +KP  K F  +L      +EP    QA++H  W
Sbjct: 154  ITSVVRTNQDAGNDDHYHVVTRSKNNIVKPNKKYFQASLHPLPENLEPSNIRQAMQHTHW 213

Query: 1582 QDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQE 1403
            + A+  E++AL++N TWSLV  P N NIV CKW++RIK+  DG+I R+KARLVA+GF+Q 
Sbjct: 214  RQAISEEFNALIRNGTWSLVPQPPNLNIVDCKWLFRIKRNPDGTIARYKARLVAKGFTQS 273

Query: 1402 EGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFED 1223
             GVD+ +TF+PV++P TI+L+L+IAL  GW + QLD+NNAFL G L E+VYM QP G +D
Sbjct: 274  PGVDFKETFAPVVRPQTIKLILTIALGKGWLMHQLDVNNAFLQGSLKEDVYMAQPPGLKD 333

Query: 1222 TTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLV 1043
               PN VC+L+KA+YGL+QAPRAW + LK ++ S+GF   +SD SLF++ + +   Y LV
Sbjct: 334  KQYPNHVCKLHKAIYGLRQAPRAWHDSLKAFITSHGFTTSKSDPSLFIYNSGSTLAYFLV 393

Query: 1042 YVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKTGLTLSQQAYIKDI 863
            YVDDL++TG + ++L  FI S++  FSLK++G   +FLG+++  +  GL LSQ  +I+DI
Sbjct: 394  YVDDLLLTGNNAQFLQDFIQSISNRFSLKNMGTPHYFLGIELIPTNKGLFLSQHKFIRDI 453

Query: 862  LNRSNMSLASPMSTPADPYSKLQ-KAGDPFSNPTLYRQVVGSLQYATITRPDISYSVNRV 686
            L R +M+ A P  TP    + L    G P ++ T YR+++G+LQY  +TRPD+S+++N++
Sbjct: 454  LERFDMAGAKPAPTPLSTTATLTLNDGTPATDSTHYRKIIGALQYLNLTRPDLSFAINKL 513

Query: 685  CQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXXXXXXXXXXXSQYG 506
             Q+MH PT+LH Q +KR+LRYLKGT++  +  + + +  L+AF             S   
Sbjct: 514  SQFMHKPTSLHLQHLKRLLRYLKGTINFGIFLRQSSSLQLYAFTDADWGGNVDDRTSTSA 573

Query: 505  FAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLI 326
            + IF G N ISW SRKQ+ VARSSTEAEYR++A TTAE+MWL  L+ +L   ++  PLL+
Sbjct: 574  YLIFFGGNPISWLSRKQRTVARSSTEAEYRAVATTTAEIMWLTNLLHELHILVSKPPLLL 633

Query: 325  CDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKD 146
            CDNVGA ++  NPV+ ++ KHI++D+HF+REQV  GKLQ+ HVS+ DQ+AD+ TKPLA  
Sbjct: 634  CDNVGATYLCSNPVLHSKMKHISMDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLAHT 693

Query: 145  RVCFLRSKLQVRPDLELARG 86
            R   LRSK+QV     + RG
Sbjct: 694  RFIDLRSKMQVTDGNYILRG 713


>gb|PNY03462.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 716

 Score =  601 bits (1549), Expect = 0.0
 Identities = 317/740 (42%), Positives = 453/740 (61%), Gaps = 28/740 (3%)
 Frame = -1

Query: 2221 ESPYQHLYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGYSASHKGYLCYHY 2042
            +SPYQ L+ +  +   L  FGCLC+P+L+PY  +K+  +S PC+F+GYS S   Y C   
Sbjct: 2    QSPYQTLHHQTHNIHHLHSFGCLCFPWLKPYTNNKLQPKSIPCVFVGYSPSQYAYRCLDP 61

Query: 2041 ATSTIYISRHVIFDEDVFPYPSLIAEQSSNIP---------------------ATPDHNP 1925
             T+ IY SRHV+F ++ FPY SL   +    P                     ATP H P
Sbjct: 62   TTNKIYTSRHVVFHDNHFPYISLTKLKPHTSPYSQPISSSPHTIIPINLPHTNATPPHEP 121

Query: 1924 SIVVTSNVQQSQNLXXXXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIF 1745
                TSN    +                  I  P+                         
Sbjct: 122  PSPSTSNAIPQE---APLLSDSTSGNGSTTIPSPS------------------------- 153

Query: 1744 VTNPTSIFRPAANNQH-PMVTRAQTNSLKP--KSFNTTLS---STVEPRLFSQAVKHKCW 1583
            +T+     + A N+ H  +VTR++ N +KP  K F  +L      +EP    QA++H  W
Sbjct: 154  ITSVVRTNQDAGNDDHYHVVTRSKNNIVKPNKKYFQASLHPLPENLEPSNIRQAMQHTHW 213

Query: 1582 QDAMKAEYDALMKNNTWSLVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQE 1403
            + A+  E++AL++N TWSLV  P N NIV CKW++RIK+  DG+I R+KARLVA+GF+Q 
Sbjct: 214  RQAISEEFNALIRNGTWSLVPQPPNLNIVDCKWLFRIKRNPDGTIARYKARLVAKGFTQS 273

Query: 1402 EGVDYFDTFSPVIKPTTIRLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFED 1223
             GVD+ +TF+PV++P TI+L+L+IAL  GW + QLD+NNAFL G L E+VYM QP G +D
Sbjct: 274  PGVDFKETFAPVVRPQTIKLILTIALGKGWLMHQLDVNNAFLQGSLKEDVYMAQPPGLKD 333

Query: 1222 TTRPNLVCRLNKALYGLKQAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLV 1043
               PN VC+L+KA+YGL+QAPRAW + LK ++ S+GF   +SD SLF++ + +   Y LV
Sbjct: 334  KQYPNHVCKLHKAIYGLRQAPRAWHDSLKAFITSHGFTTSKSDPSLFIYNSGSTLAYFLV 393

Query: 1042 YVDDLIITGTDDKYLHKFIASLNKTFSLKDLGDLSFFLGLQITRSKTGLTLSQQAYIKDI 863
            YVDDL++TG + ++L  FI S++  FSLK++G   +FLG+++  +  GL LSQ  +I+DI
Sbjct: 394  YVDDLLLTGNNAQFLQDFIQSISNRFSLKNMGTPHYFLGIELIPTNKGLFLSQHKFIRDI 453

Query: 862  LNRSNMSLASPMSTPADPYSKLQ-KAGDPFSNPTLYRQVVGSLQYATITRPDISYSVNRV 686
            L R +M+ A P  TP    + L    G P ++ T YR+++G+LQY  +TRPD+S+++N++
Sbjct: 454  LERFDMAGAKPAPTPLSTTATLTLNDGTPATDSTHYRKIIGALQYLNLTRPDLSFAINKL 513

Query: 685  CQYMHSPTNLHWQAVKRILRYLKGTLHHCLHFKPTKAKGLHAFXXXXXXXXXXXXXSQYG 506
             Q+MH PT+LH Q +KR+LRYLKGT++  +  + + +  L+AF             S   
Sbjct: 514  SQFMHKPTSLHLQHLKRLLRYLKGTINFGIFLRQSSSLQLYAFTDADWGGNVDDRTSTSA 573

Query: 505  FAIFHGANLISWTSRKQKVVARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLI 326
            + IF G N ISW SRKQ+ VARSSTEAEYR +A TTAE+MWL  L+ +L   ++  PLL+
Sbjct: 574  YLIFFGGNPISWLSRKQRTVARSSTEAEYRVVATTTAEIMWLTNLLHELHILVSKPPLLL 633

Query: 325  CDNVGAIFMTKNPVISTRSKHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKD 146
            CDNVGA ++  NPV+ ++ KHI++D+HF+REQV  GKLQ+ HVS+ DQ+AD+ TKPLA  
Sbjct: 634  CDNVGATYLCSNPVLHSKMKHISMDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLAHT 693

Query: 145  RVCFLRSKLQVRPDLELARG 86
            R   LRSK+QV     + RG
Sbjct: 694  RFIDLRSKMQVTDGNYILRG 713


>gb|PNX77541.1| retrofit protein [Trifolium pratense]
          Length = 707

 Score =  587 bits (1512), Expect = 0.0
 Identities = 306/712 (42%), Positives = 433/712 (60%), Gaps = 15/712 (2%)
 Frame = -1

Query: 2203 LYQKVPDYAFLKVFGCLCYPYLRPYNPHKIDFRSKPCIFIGYSASHKGYLCYHYATSTIY 2024
            ++ K PDY  LK FGC CYP L+PYN HK+ F +  C+F+GYS SHKGY C +    T +
Sbjct: 1    MFHKEPDYKLLKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCLNSHGRT-F 59

Query: 2023 ISRHVIFDEDVFPY-----------PSLIAEQSSNIPATPDHNPSIVVTSNVQQSQNLXX 1877
            ISRHV+F+ED FP+            + I   S++ P     N +   +  + + +N   
Sbjct: 60   ISRHVVFNEDHFPFHDGFLNTRSPLKTTINNPSTSFPLCTAGNSTSDASIPITEEENXVE 119

Query: 1876 XXXXXXXXXXXXXPIVEPNFEXXXXXXXXXXXXXXXXXXXXXIFVTNPTSIFRPAANNQH 1697
                           V  + E                           +S+    +N  H
Sbjct: 120  INSEDSQD-------VNSDTEQTDNGSLENDTAHEETLDIAQQQSVGESSLNTNTSNAIH 172

Query: 1696 PMVTRAQTNSLKPK----SFNTTLSSTVEPRLFSQAVKHKCWQDAMKAEYDALMKNNTWS 1529
               TR+++   KPK        T   T+EP    +A+    W++AM+ E++ALM N TW 
Sbjct: 173  ---TRSKSGIHKPKLPYIGLTETYKDTMEPANAKEALTRPLWKEAMQKEFEALMSNKTWI 229

Query: 1528 LVTCPTNTNIVGCKWIYRIKKRADGSIDRHKARLVAQGFSQEEGVDYFDTFSPVIKPTTI 1349
            LV     TN+V  KW+++ K ++DGSI+R KARLVA+GF Q  G+DY +TFSPV+K +T+
Sbjct: 230  LVPYQDQTNVVDSKWVFKTKYKSDGSIERRKARLVAKGFQQTVGIDYEETFSPVVKASTV 289

Query: 1348 RLVLSIALSNGWRIRQLDINNAFLNGDLSEEVYMRQPKGFEDTTRPNLVCRLNKALYGLK 1169
            R++LSIA+   W +RQLDINNAFLNG L E VYM+QP+GF D T+PN +C+L+KA+YGLK
Sbjct: 290  RIILSIAVHLNWEVRQLDINNAFLNGYLKETVYMQQPEGFVDPTKPNHICKLSKAIYGLK 349

Query: 1168 QAPRAWFNKLKTYLVSNGFKACQSDTSLFVHITPNVTIYVLVYVDDLIITGTDDKYLHKF 989
            QAPRAWF+ LKT L++ GF+  +SD+SLF+    +   ++L+YVDD+I+TG ++K+L  F
Sbjct: 350  QAPRAWFDSLKTALLNWGFQNTKSDSSLFLLKGKDHITFLLIYVDDIIVTGNNNKFLQAF 409

Query: 988  IASLNKTFSLKDLGDLSFFLGLQITRSKTGLTLSQQAYIKDILNRSNMSLASPMSTPADP 809
            I  LN  FSLKDLG L +FLG+++ R+ +G+ L Q  YI D+L +  M  AS   TP   
Sbjct: 410  IKQLNDVFSLKDLGQLHYFLGIEVQRNVSGMYLKQSKYIGDLLKKFKMDNASSCPTPMIT 469

Query: 808  YSKLQKAGDPFSNPTLYRQVVGSLQYATITRPDISYSVNRVCQYMHSPTNLHWQAVKRIL 629
              +    G+   +PT++RQ +G LQY T TRPDI++SVN++ QYM SPT  HWQ +KRIL
Sbjct: 470  GRQFTVEGEKLKDPTVFRQAIGGLQYLTHTRPDIAFSVNKLSQYMSSPTIDHWQGIKRIL 529

Query: 628  RYLKGTLHHCLHFKPTKAKGLHAFXXXXXXXXXXXXXSQYGFAIFHGANLISWTSRKQKV 449
            RYL+GT+++CLH KP+    +  F             S  G  +F G  LISW+SRKQKV
Sbjct: 530  RYLQGTINYCLHIKPSTDLDITGFSDADWATSIDDRKSMSGQCVFLGETLISWSSRKQKV 589

Query: 448  VARSSTEAEYRSLAYTTAELMWLKLLISDLCAPLTVSPLLICDNVGAIFMTKNPVISTRS 269
            V+RSSTE+EYR+LA   AE+ W++ L+++L  PL   P+L CDN+ A  +  NPV+  RS
Sbjct: 590  VSRSSTESEYRALADLAAEIAWIRSLLTELELPLPRKPILWCDNLSAKALASNPVLHARS 649

Query: 268  KHIALDFHFIREQVESGKLQICHVSSVDQIADIFTKPLAKDRVCFLRSKLQV 113
            KHI +D H+IR+QV   ++ + +V + DQ+AD  TKPL+  R   +R KL V
Sbjct: 650  KHIEIDVHYIRDQVLQNEVVVAYVPTADQVADCLTKPLSHTRFSQIRDKLGV 701