BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00002915
         (2100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023746025.1| RNA polymerase sigma factor sigF, chloroplas...   806   0.0  
ref|XP_022000794.1| RNA polymerase sigma factor sigF, chloroplas...   803   0.0  
gb|PLY64601.1| hypothetical protein LSAT_6X27301 [Lactuca sativa]     797   0.0  
gb|KVH90482.1| RNA polymerase sigma-70 [Cynara cardunculus var. ...   758   0.0  
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   491   e-163
ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplas...   490   e-163
ref|XP_019250683.1| PREDICTED: RNA polymerase sigma factor sigF,...   486   e-161
ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF,...   484   e-161
ref|XP_016487689.1| PREDICTED: RNA polymerase sigma factor sigF,...   484   e-161
ref|XP_020422238.1| RNA polymerase sigma factor sigF, chloroplas...   484   e-160
ref|XP_011094631.1| RNA polymerase sigma factor sigF, chloroplas...   483   e-160
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   484   e-160
dbj|GAV75806.1| Sigma70_r3 domain-containing protein/Sigma70_r2 ...   483   e-160
ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplas...   483   e-160
emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]     480   e-159
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   480   e-159
gb|POO01707.1| RNA polymerase sigma factor [Trema orientalis]         480   e-159
ref|XP_020422239.1| RNA polymerase sigma factor sigF, chloroplas...   479   e-159
ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF,...   478   e-158
ref|XP_021827463.1| RNA polymerase sigma factor sigF, chloroplas...   478   e-158

>ref|XP_023746025.1| RNA polymerase sigma factor sigF, chloroplastic [Lactuca sativa]
          Length = 563

 Score =  806 bits (2081), Expect = 0.0
 Identities = 426/547 (77%), Positives = 465/547 (85%), Gaps = 14/547 (2%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKE 341
            PPRT LKQ P PPSALK  EP+AP HSSMLATTLAQHFPTSVLIQEQRRESKPLLQT+K+
Sbjct: 17   PPRTQLKQSPPPPSALKFCEPSAPAHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTIKD 76

Query: 342  EKSSPETVDND--EVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTREKSLSS-STMQP- 500
            EK+S    D+   EVD  SSD+YLKEFQ QLLQWPGLW  LPS HTREK LS  +T QP 
Sbjct: 77   EKTSQIGADSSTHEVDPTSSDEYLKEFQCQLLQWPGLWYMLPSSHTREKPLSPLTTTQPV 136

Query: 501  -------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELE 659
                   MD E++QV+ LAKKALSAS EAASL DD ES+GVD DNS+ SSL S +  EL+
Sbjct: 137  PNGSKKLMDVEMQQVLDLAKKALSASKEAASLADDGESLGVDLDNSITSSLGSRHQTELQ 196

Query: 660  TKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLA 839
            TKKVKFVKSTR  ERQSKRRKG+KSNV++RE+  STKPE EKKTSYKD+NLHDPLRMFLA
Sbjct: 197  TKKVKFVKSTRHQERQSKRRKGTKSNVVIRETKNSTKPELEKKTSYKDSNLHDPLRMFLA 256

Query: 840  RPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQ 1019
            RPVTR           I +IK GM+LEEARSRFH+QFNREPTLVEWAEAA+LSSHELKSQ
Sbjct: 257  RPVTRELLTSKEELQLIVHIKAGMRLEEARSRFHDQFNREPTLVEWAEAANLSSHELKSQ 316

Query: 1020 LHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFA 1199
            LHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFA
Sbjct: 317  LHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFA 376

Query: 1200 TYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAG 1379
            TYAYWWIRQSIRRAIFQNSKLIRLPEGVY ++YKVSEAKR CIREGNH+P+QKQIA+QAG
Sbjct: 377  TYAYWWIRQSIRRAIFQNSKLIRLPEGVYNLLYKVSEAKRVCIREGNHDPSQKQIAEQAG 436

Query: 1380 MTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLL 1559
            MT+EKLQKLRS+QKITLSLQKP++ ND+               D S SKQ+MRNHI+NLL
Sbjct: 437  MTLEKLQKLRSVQKITLSLQKPIYPNDTTTYEEITPDTTIDSPDTSVSKQVMRNHISNLL 496

Query: 1560 SVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLD 1739
            SVLNPKERKVIRLRYGIG EVRKSLADIGI+LGVSKERIRQ+ESR+LFKLKQYSES GLD
Sbjct: 497  SVLNPKERKVIRLRYGIGGEVRKSLADIGIILGVSKERIRQLESRSLFKLKQYSESQGLD 556

Query: 1740 AYKELLI 1760
            AYK+LLI
Sbjct: 557  AYKDLLI 563


>ref|XP_022000794.1| RNA polymerase sigma factor sigF, chloroplastic [Helianthus annuus]
 gb|OTG01248.1| putative RNApolymerase sigma-subunit F [Helianthus annuus]
          Length = 566

 Score =  803 bits (2074), Expect = 0.0
 Identities = 430/551 (78%), Positives = 463/551 (84%), Gaps = 18/551 (3%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKE 341
            PPRT LKQ PHPPSALKLYEP AP HSSMLAT+LAQHFPTSVLIQEQR ES+PLLQT+K+
Sbjct: 16   PPRTQLKQSPHPPSALKLYEPTAPAHSSMLATSLAQHFPTSVLIQEQRPESRPLLQTIKD 75

Query: 342  EKSSPETVDND-----EVDAISSDQYLKEFQSQLLQWPGLWLPS-HTREKSLSSSTMQPM 503
            +K+S   +D+      EVDAISSD+YLKEFQSQLLQWPGLWLPS   RE +LSSS  QP+
Sbjct: 76   DKTSQAIIDSRQLGACEVDAISSDRYLKEFQSQLLQWPGLWLPSSEKRENTLSSSVTQPV 135

Query: 504  --------DAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASS---LVSTNPG 650
                    + E+++VIALAK+ALSAS EAASLVD+ ES  VD DNS  +S   L ST+  
Sbjct: 136  PNGTETNINIEMEKVIALAKQALSASKEAASLVDNDESFKVDVDNSKVNSTLSLGSTSSA 195

Query: 651  ELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPE-PEKKTSYKDANLHDPLR 827
            EL+TKKVKFVKSTRLLERQSKRRKGSKSNVIVRES +STK + PEKKTSYKDANLHDPLR
Sbjct: 196  ELQTKKVKFVKSTRLLERQSKRRKGSKSNVIVRESTSSTKTDLPEKKTSYKDANLHDPLR 255

Query: 828  MFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHE 1007
             FLARPVTR           IA+IK GMKLEE R R H Q+ REPTLVEWAEAASL+  +
Sbjct: 256  TFLARPVTRELLNSKEELELIAHIKCGMKLEEVRCRLHTQYGREPTLVEWAEAASLNCQD 315

Query: 1008 LKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAG 1187
            LKSQ+HLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAG
Sbjct: 316  LKSQVHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAG 375

Query: 1188 CRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIA 1367
            CRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKR  IREGNHEPTQKQIA
Sbjct: 376  CRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRLIIREGNHEPTQKQIA 435

Query: 1368 DQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHI 1547
            DQAGMTVEKLQKL+SIQKITLSLQKP+WANDS               D  ASKQ+MRNHI
Sbjct: 436  DQAGMTVEKLQKLKSIQKITLSLQKPIWANDSTTYEEITPDTTMDSPDDCASKQLMRNHI 495

Query: 1548 TNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSES 1727
             NLL VLN KERKVIRLRYGIGCEVRKSLADIGIM+GV+KERIRQVESRALFKLKQYSES
Sbjct: 496  NNLLGVLNQKERKVIRLRYGIGCEVRKSLADIGIMMGVTKERIRQVESRALFKLKQYSES 555

Query: 1728 HGLDAYKELLI 1760
             GLDAYK+LLI
Sbjct: 556  QGLDAYKDLLI 566


>gb|PLY64601.1| hypothetical protein LSAT_6X27301 [Lactuca sativa]
          Length = 575

 Score =  797 bits (2058), Expect = 0.0
 Identities = 426/559 (76%), Positives = 465/559 (83%), Gaps = 26/559 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPS------------ALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQR 305
            PPRT LKQ P PPS            ALK  EP+AP HSSMLATTLAQHFPTSVLIQEQR
Sbjct: 17   PPRTQLKQSPPPPSGPLPNTIKNAIAALKFCEPSAPAHSSMLATTLAQHFPTSVLIQEQR 76

Query: 306  RESKPLLQTLKEEKSSPETVDND--EVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTRE 470
            RESKPLLQT+K+EK+S    D+   EVD  SSD+YLKEFQ QLLQWPGLW  LPS HTRE
Sbjct: 77   RESKPLLQTIKDEKTSQIGADSSTHEVDPTSSDEYLKEFQCQLLQWPGLWYMLPSSHTRE 136

Query: 471  KSLSS-STMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVA 623
            K LS  +T QP        MD E++QV+ LAKKALSAS EAASL DD ES+GVD DNS+ 
Sbjct: 137  KPLSPLTTTQPVPNGSKKLMDVEMQQVLDLAKKALSASKEAASLADDGESLGVDLDNSIT 196

Query: 624  SSLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKD 803
            SSL S +  EL+TKKVKFVKSTR  ERQSKRRKG+KSNV++RE+  STKPE EKKTSYKD
Sbjct: 197  SSLGSRHQTELQTKKVKFVKSTRHQERQSKRRKGTKSNVVIRETKNSTKPELEKKTSYKD 256

Query: 804  ANLHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAE 983
            +NLHDPLRMFLARPVTR           I +IK GM+LEEARSRFH+QFNREPTLVEWAE
Sbjct: 257  SNLHDPLRMFLARPVTRELLTSKEELQLIVHIKAGMRLEEARSRFHDQFNREPTLVEWAE 316

Query: 984  AASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSV 1163
            AA+LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSV
Sbjct: 317  AANLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSV 376

Query: 1164 QKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNH 1343
            QKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVY ++YKVSEAKR CIREGNH
Sbjct: 377  QKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYNLLYKVSEAKRVCIREGNH 436

Query: 1344 EPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASAS 1523
            +P+QKQIA+QAGMT+EKLQKLRS+QKITLSLQKP++ ND+               D S S
Sbjct: 437  DPSQKQIAEQAGMTLEKLQKLRSVQKITLSLQKPIYPNDTTTYEEITPDTTIDSPDTSVS 496

Query: 1524 KQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALF 1703
            KQ+MRNHI+NLLSVLNPKERKVIRLRYGIG EVRKSLADIGI+LGVSKERIRQ+ESR+LF
Sbjct: 497  KQVMRNHISNLLSVLNPKERKVIRLRYGIGGEVRKSLADIGIILGVSKERIRQLESRSLF 556

Query: 1704 KLKQYSESHGLDAYKELLI 1760
            KLKQYSES GLDAYK+LLI
Sbjct: 557  KLKQYSESQGLDAYKDLLI 575


>gb|KVH90482.1| RNA polymerase sigma-70 [Cynara cardunculus var. scolymus]
          Length = 549

 Score =  758 bits (1956), Expect = 0.0
 Identities = 409/557 (73%), Positives = 447/557 (80%), Gaps = 24/557 (4%)
 Frame = +3

Query: 162  PPRTHLKQL-PHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLK 338
            PPRT LKQ  P PPSALKLYEPAAP HSSMLAT+LAQHFPTSVLIQEQRRESKPLLQT+K
Sbjct: 16   PPRTQLKQFSPPPPSALKLYEPAAPAHSSMLATSLAQHFPTSVLIQEQRRESKPLLQTIK 75

Query: 339  EEKSSPETVDND------EVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTREKSLSSST 491
            ++K+S  TVD +      EVDAISSDQYLKEFQ QLLQWP LW  LPS HTREK+ SS T
Sbjct: 76   DDKTSQATVDGEQKGADHEVDAISSDQYLKEFQCQLLQWPALWYLLPSTHTREKTPSSLT 135

Query: 492  MQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNP 647
            MQP        MD E++ V+ LAKKALSAS EAASL DD E  GV               
Sbjct: 136  MQPAPNGTTKLMDVEMEHVLDLAKKALSASKEAASLADDGEPFGV--------------- 180

Query: 648  GELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLR 827
                    KFVKSTRLLERQSKRRKG+KSNVIVRE++ STKPEPEKKT+Y+D+NLHDPLR
Sbjct: 181  --------KFVKSTRLLERQSKRRKGTKSNVIVRETSTSTKPEPEKKTTYRDSNLHDPLR 232

Query: 828  MFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHE 1007
            MFLARPVTR           IA+IK GM+LEEARSRF +QF+REPTLVEWAEA SLS HE
Sbjct: 233  MFLARPVTRELLSSKEELELIAHIKAGMQLEEARSRFRDQFHREPTLVEWAEATSLSCHE 292

Query: 1008 LKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAG 1187
            LKSQLH G SSREKLICANLRMVVYIAKQYRGRGLDLQDL+QEGSMGLMRSV KFKPQAG
Sbjct: 293  LKSQLHRGTSSREKLICANLRMVVYIAKQYRGRGLDLQDLMQEGSMGLMRSVLKFKPQAG 352

Query: 1188 CRFATYAYWWIRQSIRRAIFQNSKLIRLP------EGVYTMMYKVSEAKRSCIREGNHEP 1349
            CRFATYAYWWIRQSIRRAIFQNSKLIRLP      EG+Y ++YKVSEAKR CIREGNHEP
Sbjct: 353  CRFATYAYWWIRQSIRRAIFQNSKLIRLPVCHHFFEGIYNLLYKVSEAKRICIREGNHEP 412

Query: 1350 TQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQ 1529
            TQKQIA QAGM VEK+QKLRS+QKITLSLQ+P+W +DS               D SASKQ
Sbjct: 413  TQKQIAAQAGMPVEKVQKLRSVQKITLSLQQPIWPDDSTTYEEITADTTIDSPDTSASKQ 472

Query: 1530 IMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKL 1709
            +MRNHI+NLL +L+PKERKVIRLRYGIG EVRKSLADIGI+LGVSKERIRQ+ESR+LFKL
Sbjct: 473  LMRNHISNLLGILSPKERKVIRLRYGIGGEVRKSLADIGIILGVSKERIRQLESRSLFKL 532

Query: 1710 KQYSESHGLDAYKELLI 1760
            KQYSES GL AYK+LL+
Sbjct: 533  KQYSESQGLTAYKDLLV 549


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
 ref|XP_016467962.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Nicotiana tabacum]
          Length = 572

 Score =  491 bits (1263), Expect = e-163
 Identities = 270/540 (50%), Positives = 364/540 (67%), Gaps = 21/540 (3%)
 Frame = +3

Query: 201  SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN--- 371
            S L LYE  AP  +S+    L +H P SV+  EQ+ E++  L ++KEEK+S  T+D    
Sbjct: 33   SVLMLYEHVAPALTSVPHAYLVRHVPASVINPEQQFENRLQLHSVKEEKTSLATIDRRLV 92

Query: 372  -------DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQ 497
                   +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    +
Sbjct: 93   EAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKVPLTLDTESLSDKGEK 152

Query: 498  PMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKF 677
             M+ E   V+ALA+KAL AS EAA L +D++ +G + D+S+  +L+STN  + + K  + 
Sbjct: 153  LMNFEPHNVVALARKALLASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTDDKLKDQRI 212

Query: 678  VKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRX 857
             +STRLLER+SK+R    S   V+E+N S +P+  ++ + +  +L+DPLRMFL  P TR 
Sbjct: 213  ARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVN-ESIDLNDPLRMFLWGPETRQ 271

Query: 858  XXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNS 1037
                      I  I+  MKL+E + R   QF+REPTL+EWAEAA L+S EL+SQL  G S
Sbjct: 272  LLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKS 331

Query: 1038 SREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWW 1217
            SR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWW
Sbjct: 332  SRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWW 391

Query: 1218 IRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKL 1397
            IRQ +R+AIFQ+S+ IRLPE VY ++ KV +AK+ CI++GNH PT++ IA  AGM+VE+L
Sbjct: 392  IRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVERL 451

Query: 1398 QKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLLSVLNPK 1577
            Q L S  +  LS+Q+ VW +                 + S SKQ+MR H+ NLL+VL+PK
Sbjct: 452  QSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLSPK 511

Query: 1578 ERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 1757
            ERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+ESRAL++LKQ   SHGLDAY +LL
Sbjct: 512  ERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAYNDLL 571


>ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplastic [Quercus suber]
 gb|POE50311.1| rna polymerase sigma factor sigf, chloroplastic [Quercus suber]
          Length = 570

 Score =  490 bits (1262), Expect = e-163
 Identities = 277/557 (49%), Positives = 372/557 (66%), Gaps = 24/557 (4%)
 Frame = +3

Query: 162  PPRTHLKQL---PHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQT 332
            P R HLK     P   S L L+E AAP  +SM +T +A+  PTSVL+QEQ  E+  LL  
Sbjct: 15   PLRNHLKNCLASPSSASVLMLHEQAAPAVTSMPSTLIARRSPTSVLLQEQHDENGLLLDM 74

Query: 333  LKEEKSSPETVD----------NDEVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTREK 473
             KE+ +    +D          ++E ++ +SDQ +++F+ QLL WPGLW   PS  T + 
Sbjct: 75   FKEDTAPRAMLDKRQMGTGASVHEEKNSGNSDQLVQDFERQLLHWPGLWHLFPSLQTGKN 134

Query: 474  SLSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASS 629
            + SS ++QP        MD E   V+A+AKKALSAS EAA L +D++ IG D D+S +S 
Sbjct: 135  AHSSLSLQPVTTDLEKPMDVEPCNVVAIAKKALSASKEAALLAEDSKLIGADFDDSPSSG 194

Query: 630  LVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDAN 809
              S +   L  ++ K V+STRLLER+SK+R+  KS V++ E+ ++   E ++K   +  +
Sbjct: 195  SGSRSLVNLPLEEEKTVRSTRLLERRSKKRRVPKSEVMIHETYSTRNVEVKRKIR-EGFD 253

Query: 810  LHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAA 989
             +DPLR+FL  P T+           IA ++  +KLEE +SR    F REPTLVEWAE A
Sbjct: 254  PNDPLRLFLWGPETKQLLTVDEESKLIAQVQDLLKLEEVKSRLQSHFGREPTLVEWAEGA 313

Query: 990  SLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQK 1169
             LS   L+S+LH  NSSR+KLI ANLRMVV+IAKQY GRGL  QDLLQEGSMGLM+SV K
Sbjct: 314  GLSYRVLQSKLHSCNSSRQKLIYANLRMVVHIAKQYLGRGLSFQDLLQEGSMGLMKSVVK 373

Query: 1170 FKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEP 1349
            FKPQAGCRF TYAYWWIRQ+IR+AIFQ+S+ IRLPE V+T++ K+ E+KR+ I+EGNH P
Sbjct: 374  FKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVHTLLGKIMESKRALIQEGNHHP 433

Query: 1350 TQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQ 1529
            T++ IA   GMT++KL+KL    ++ LS+Q+PVWA+                 D S +KQ
Sbjct: 434  TKEDIARHVGMTLDKLEKLLYNTRMPLSMQQPVWADQKTTFQEVTADTGIEIPDVSVAKQ 493

Query: 1530 IMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKL 1709
            +MR H+ NLLS L+P+ERK+IRLR+GI    +KSLA+IG M G+SKER+RQ+ESRAL++L
Sbjct: 494  LMRQHVRNLLSNLSPRERKIIRLRFGIDNSEQKSLAEIGNMFGLSKERVRQLESRALYRL 553

Query: 1710 KQYSESHGLDAYKELLI 1760
            KQ   S GL AY +LL+
Sbjct: 554  KQCLSSEGLGAYADLLV 570


>ref|XP_019250683.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            attenuata]
 gb|OIT01336.1| rna polymerase sigma factor sigf, chloroplastic [Nicotiana attenuata]
          Length = 571

 Score =  486 bits (1251), Expect = e-161
 Identities = 268/540 (49%), Positives = 363/540 (67%), Gaps = 21/540 (3%)
 Frame = +3

Query: 201  SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN--- 371
            S L LYE  AP  +S+    LA+H P SV+  EQ+ E++  L ++KE+K+S  T+     
Sbjct: 32   SVLMLYELVAPAFTSVPHAYLARHVPASVINPEQQFENRLQLHSVKEDKTSLATIGRRLV 91

Query: 372  -------DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQ 497
                   +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    +
Sbjct: 92   EAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHIKEKGPLTLDTESLSDKGEK 151

Query: 498  PMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKF 677
             M+ E   V+ALA+KAL AS EAA L  D++ +G + D+S+  +L+STN  + + K  + 
Sbjct: 152  LMNFEPHNVVALARKALLASREAALLAKDSKLLGTNFDDSIFPNLLSTNLTDDKLKDQRI 211

Query: 678  VKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRX 857
             +STRLLER+SK+R    S   V+E+N S +P+  ++ + +  +L+DPLRMFL  P TR 
Sbjct: 212  ARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRRVN-ESIDLNDPLRMFLWGPETRQ 270

Query: 858  XXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNS 1037
                      I  I+  MKL+E + R   QF+REPT++EWAEAA L+S EL+SQL  G S
Sbjct: 271  LLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTMIEWAEAAGLTSRELQSQLRSGKS 330

Query: 1038 SREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWW 1217
            SR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWW
Sbjct: 331  SRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWW 390

Query: 1218 IRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKL 1397
            IRQ +R+AIFQ+S+ IRLPE VY ++ KV +AK+ CI++GNH PT++ IA  AGM+VE+L
Sbjct: 391  IRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVERL 450

Query: 1398 QKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLLSVLNPK 1577
            Q L S  +  LS+Q+ VW +                 + S SKQ+MR H+ NLL+VL+PK
Sbjct: 451  QSLLSAARTPLSMQQLVWTDQDTTFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLSPK 510

Query: 1578 ERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 1757
            ERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+ESRAL++LKQ   SHGLDAY +LL
Sbjct: 511  ERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLNSHGLDAYSDLL 570


>ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 544

 Score =  484 bits (1245), Expect = e-161
 Identities = 270/540 (50%), Positives = 361/540 (66%), Gaps = 21/540 (3%)
 Frame = +3

Query: 201  SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN--- 371
            + L LYE  AP  +S+    LA+H P SV+  EQ+ E++  L T+KEEK+S  T+D    
Sbjct: 5    AVLMLYEHVAPGLTSVPHAYLARHVPASVINPEQQFENRLQLHTVKEEKTSLATIDRRLV 64

Query: 372  -------DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQ 497
                   +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    +
Sbjct: 65   EAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKGPLTLDTESLSDKGEK 124

Query: 498  PMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKF 677
             M+ E + V+ALA+KAL AS EAA L +D++ +  + D+S+  +L+STN  + + K  K 
Sbjct: 125  LMNFEPESVVALARKALLASREAALLAEDSKLLETNFDDSIFPNLLSTNLTDDKLKDQKT 184

Query: 678  VKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRX 857
            V+STR LER+SKRR        V+E+N S +P+  ++   +  +L+DPLRMFL  P T+ 
Sbjct: 185  VRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRRRVK-ESIDLNDPLRMFLWGPETKQ 243

Query: 858  XXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNS 1037
                      I  I+  MKL+E + R   QF+REPTL+EWAEAA L+S EL+SQL  G S
Sbjct: 244  LLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKS 303

Query: 1038 SREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWW 1217
            SR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWW
Sbjct: 304  SRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWW 363

Query: 1218 IRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKL 1397
            IRQ +R+ IFQ+S+ IRLPE VY ++ KV +AK+ CI++GN  PT++ IA  AGM+VE+L
Sbjct: 364  IRQGVRKTIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNRHPTREDIASCAGMSVERL 423

Query: 1398 QKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLLSVLNPK 1577
            Q L S  +  LS+Q+ VW +                 + S SKQ+MR HI NLL+VLNPK
Sbjct: 424  QSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEAPELSVSKQLMRRHIRNLLNVLNPK 483

Query: 1578 ERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 1757
            ERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+ESRAL+KLK+   SHGLDAY +LL
Sbjct: 484  ERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQLESRALYKLKKNLSSHGLDAYSDLL 543


>ref|XP_016487689.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Nicotiana tabacum]
          Length = 572

 Score =  484 bits (1247), Expect = e-161
 Identities = 271/540 (50%), Positives = 362/540 (67%), Gaps = 21/540 (3%)
 Frame = +3

Query: 201  SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN--- 371
            S L LYE  AP  +S+    LA+H P SV+  EQ+ E++  L T+K+EK+S  T+D    
Sbjct: 33   SVLMLYEHVAPGLTSVPHAYLARHVPASVINPEQQFENRLQLHTVKKEKTSLATIDRRLV 92

Query: 372  -------DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQ 497
                   +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    +
Sbjct: 93   EAASSAMEENDAVDSEQNINVLQVQLLRSPGLSYLFSSYHLKEKRPLTLDTESLSDKGEK 152

Query: 498  PMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKF 677
             M+ E + V+ALA+KAL AS EAA L +D++ +  + D+S+  +L+STN  + + K  K 
Sbjct: 153  LMNFEPESVVALARKALLASREAALLAEDSKLLETNFDDSIFPNLLSTNLTDDKLKDQKT 212

Query: 678  VKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRX 857
            V+STR LER+SKRR        V+E+N S +P+  ++   +  +L+DPLRMFL  P T+ 
Sbjct: 213  VRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRRRVK-ESIDLNDPLRMFLWGPETKQ 271

Query: 858  XXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNS 1037
                      I  I+  MKL+E + R   QF+REPTL+EWAEAA L+S EL+SQL  G S
Sbjct: 272  LLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKS 331

Query: 1038 SREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWW 1217
            SR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWW
Sbjct: 332  SRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWW 391

Query: 1218 IRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKL 1397
            IRQ +R+AIFQ+S+ IRLPE VY ++ KV +AK+ CI++GN  PT++ IA  AGM+VE+L
Sbjct: 392  IRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNRHPTREDIASCAGMSVERL 451

Query: 1398 QKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLLSVLNPK 1577
            Q L S  +  LS+Q+ VW +                 + S SKQ+MR HI NLL+VLNPK
Sbjct: 452  QSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEAPELSVSKQLMRRHIRNLLNVLNPK 511

Query: 1578 ERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 1757
            ERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+ESRAL+KLK+   SHGLDAY +LL
Sbjct: 512  ERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQLESRALYKLKKNLSSHGLDAYSDLL 571


>ref|XP_020422238.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
            persica]
 gb|ONI03024.1| hypothetical protein PRUPE_6G234100 [Prunus persica]
          Length = 573

 Score =  484 bits (1246), Expect = e-160
 Identities = 279/561 (49%), Positives = 374/561 (66%), Gaps = 28/561 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL 326
            P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KPLL
Sbjct: 15   PSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL 73

Query: 327  QTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE-- 470
              LKE+K+S   +D  +++   ++  D  + +F       + QLL    L + S  +   
Sbjct: 74   HVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSSLQTGA 133

Query: 471  --------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVAS 626
                    +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S++ 
Sbjct: 134  KPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSL 193

Query: 627  SLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKTSY 797
             L  T+      ++ K V+STR+LER+ KR   RK  KS VI  ESN+ T  +  KK S 
Sbjct: 194  GLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKIS- 252

Query: 798  KDANLHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEW 977
            +  N +DPLR+FL  P TR           IA ++   KLEE +SR   QF REPTL+EW
Sbjct: 253  EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEW 312

Query: 978  AEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMR 1157
            AEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+
Sbjct: 313  AEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMK 372

Query: 1158 SVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREG 1337
            SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+EG
Sbjct: 373  SVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEG 432

Query: 1338 NHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDAS 1517
            NH P ++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                 D S
Sbjct: 433  NHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVS 492

Query: 1518 ASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRA 1697
             +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ESRA
Sbjct: 493  VAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRA 552

Query: 1698 LFKLKQYSESHGLDAYKELLI 1760
              KL+Q   S GL AY  LL+
Sbjct: 553  FLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_011094631.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Sesamum
            indicum]
          Length = 561

 Score =  483 bits (1244), Expect = e-160
 Identities = 275/556 (49%), Positives = 367/556 (66%), Gaps = 23/556 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL----- 326
            PPRTHL+      S L L++   P  +S L+TTLA+H PTSVL Q+Q  ES+ +L     
Sbjct: 15   PPRTHLRNCSSS-SVLLLHDQVTPALTS-LSTTLARHSPTSVLTQDQHNESRSMLCSKED 72

Query: 327  ------QTL--KEEKSSPETVDNDEVDAISSDQYLKEFQSQLLQWPGLWL--PSHTREKS 476
                  QTL  ++   +P +  ND    +  DQY+ EFQ QLL+ P LW   PS   ++ 
Sbjct: 73   SVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLRRPELWYLWPSLQTKEQ 132

Query: 477  LSSSTMQPM--------DAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSL 632
            L S TM+ +        D E  +V+ALA++A SA  EAA++V D E  G   D+S +   
Sbjct: 133  LFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLDDSSSIRS 192

Query: 633  VSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANL 812
            ++  P +      + V+STRL+ERQ KRR+  K  + V+E+N   KPE ++K+  +  + 
Sbjct: 193  LTGVPAQ------RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSD-EGFDP 245

Query: 813  HDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAAS 992
            +DPLR+FL  P TR           I  I+  M+L+E +SR   QF+REPTLVEWA AA 
Sbjct: 246  NDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAG 305

Query: 993  LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKF 1172
            +S   L+SQ+H G+SSR+KLICAN RMVV+IAKQY+GRGL LQDLLQEGSMGLMRSV+KF
Sbjct: 306  ISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKF 365

Query: 1173 KPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPT 1352
            KPQAGCRFATYAYWWIRQSIR+A+FQ+S+ IRLPE VY+++ +V EAK+ CI++GNH PT
Sbjct: 366  KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPT 425

Query: 1353 QKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQI 1532
            ++ IA  AGM+VE L++L    ++ LSLQKPVW +                 D   +KQ+
Sbjct: 426  KEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQL 485

Query: 1533 MRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLK 1712
            MR HI NLLSVL+P+ERK+IRLR+GI    +KSL++IG   G+SKER+RQ+ESRAL+KLK
Sbjct: 486  MRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLK 545

Query: 1713 QYSESHGLDAYKELLI 1760
            Q   SHGL AY  ++I
Sbjct: 546  QCLGSHGLAAYANMII 561


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  484 bits (1245), Expect = e-160
 Identities = 279/561 (49%), Positives = 375/561 (66%), Gaps = 28/561 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL 326
            P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KPLL
Sbjct: 15   PSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL 73

Query: 327  QTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE-- 470
              LKE+K+S  T+D  +++   ++  D  + +F       + QLL    L + S  +   
Sbjct: 74   HVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLLNPDILDVFSSLQTGA 133

Query: 471  --------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVAS 626
                    +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S++ 
Sbjct: 134  KPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSL 193

Query: 627  SLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKTSY 797
             L  T+      ++ K V+STR+LER+ KR   RK  KS +I  ESN+ T  +  KK S 
Sbjct: 194  GLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHESNSFTSSDVPKKIS- 252

Query: 798  KDANLHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEW 977
            +  N +DPLR+FL  P TR           IA ++   KLEE +SR   QF REPTL+EW
Sbjct: 253  EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEW 312

Query: 978  AEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMR 1157
            AEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+
Sbjct: 313  AEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMK 372

Query: 1158 SVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREG 1337
            SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+EG
Sbjct: 373  SVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEG 432

Query: 1338 NHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDAS 1517
            NH P ++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                 D S
Sbjct: 433  NHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVS 492

Query: 1518 ASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRA 1697
             +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ESRA
Sbjct: 493  VAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRA 552

Query: 1698 LFKLKQYSESHGLDAYKELLI 1760
              KL+Q   S GL AY  LL+
Sbjct: 553  FLKLRQSLGSQGLGAYGPLLV 573


>dbj|GAV75806.1| Sigma70_r3 domain-containing protein/Sigma70_r2 domain-containing
            protein/Sigma70_r4 domain-containing protein [Cephalotus
            follicularis]
          Length = 564

 Score =  483 bits (1243), Expect = e-160
 Identities = 274/556 (49%), Positives = 365/556 (65%), Gaps = 23/556 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKE 341
            P +THLK   +  S+      A+P  +S+  T  A+H PTSVL+QEQR E +PL    KE
Sbjct: 16   PSKTHLKNGLYSSSS------ASPAITSVSTTLTARHLPTSVLLQEQRDELRPLSHLFKE 69

Query: 342  EKSSPETVD----------NDEVDAISSDQYLKEFQSQLLQWPGLW---LPSHTREKSLS 482
            EK+   T+D          N+E  + + DQ +++F+ QLL WPGLW    PS T E   S
Sbjct: 70   EKTPQTTLDGRQMESGALINEEKISGNLDQLVQDFEHQLLHWPGLWNFLSPSQTSEDPSS 129

Query: 483  SSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTES--IGVDHDNSVASSL 632
              T Q         MD E    I+LA++ALSAS  AASL  DT+S  I  D D  +++S 
Sbjct: 130  LLTTQSVVTDSQPLMDVEPSDAISLAERALSASKLAASLAQDTKSGTIEADIDYPLSTSS 189

Query: 633  VSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANL 812
             S +      ++VK V+STR+LER SKRR   K NVIV E + S + + ++K   +  + 
Sbjct: 190  GSNSSSNFPIEEVKIVRSTRVLERWSKRRNIPKPNVIVHEMSISRRADVKRKLK-EGFDP 248

Query: 813  HDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAAS 992
            +DPLR+FL  P T            I  I+  +KLEE +SR   QF REPTL+EWAEA  
Sbjct: 249  NDPLRLFLWGPETTQLLSFKEESELIVQIQNLLKLEEVKSRLQSQFGREPTLIEWAEAVG 308

Query: 993  LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKF 1172
            +S   L+SQLH GN SREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+SV+KF
Sbjct: 309  MSHQVLRSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLMQEGSMGLMKSVKKF 368

Query: 1173 KPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPT 1352
            KPQAGCRFA+YAYWWIRQ +R+AIFQ+SK IRLPE  Y+++ KV EAK+S I+EGNH P+
Sbjct: 369  KPQAGCRFASYAYWWIRQMVRKAIFQHSKTIRLPERFYSLLGKVMEAKKSYIQEGNHHPS 428

Query: 1353 QKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQI 1532
             +++A + G+TV+KLQKL    +  LS+Q+PVWA+                 D S SKQ+
Sbjct: 429  IEELAGRVGITVDKLQKLILSTRNPLSMQQPVWADQKTTLQEITADPEIEVPDLSVSKQL 488

Query: 1533 MRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLK 1712
            MR H+ NLLSVL+ KE+++IRLR+GIG   ++SL++IG + G+SKER+RQ+E+RA++KLK
Sbjct: 489  MRQHVRNLLSVLSQKEKQIIRLRFGIGDGEQRSLSEIGNIFGLSKERVRQLENRAIYKLK 548

Query: 1713 QYSESHGLDAYKELLI 1760
            Q  ++ GLDAY  L+I
Sbjct: 549  QCLDNQGLDAYANLII 564


>ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
            avium]
          Length = 573

 Score =  483 bits (1243), Expect = e-160
 Identities = 278/561 (49%), Positives = 375/561 (66%), Gaps = 28/561 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL 326
            P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KPLL
Sbjct: 15   PSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL 73

Query: 327  QTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE-- 470
              LKE+K+S  T+D  +++   ++  D  + +F       + QLL    L + S  +   
Sbjct: 74   HVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLLNPDILDVFSSLQTGA 133

Query: 471  --------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVAS 626
                    +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S++ 
Sbjct: 134  KPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSL 193

Query: 627  SLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKTSY 797
             L  T+      ++   V+STR+LER+ KR   RK  KS VI  ESN+ T  +  KK S 
Sbjct: 194  GLGYTSLANWIVEEETTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTSSDVRKKIS- 252

Query: 798  KDANLHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEW 977
            +  N +DPLR+FL  P TR           IA ++   KLEE ++R   QF REPTL+EW
Sbjct: 253  EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKTRLQTQFGREPTLIEW 312

Query: 978  AEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMR 1157
            AEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+
Sbjct: 313  AEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMK 372

Query: 1158 SVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREG 1337
            SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+EG
Sbjct: 373  SVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEG 432

Query: 1338 NHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDAS 1517
            NH P+++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                 D S
Sbjct: 433  NHNPSKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVS 492

Query: 1518 ASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRA 1697
             +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ESRA
Sbjct: 493  VAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRA 552

Query: 1698 LFKLKQYSESHGLDAYKELLI 1760
              KL+Q   S GL AY  LL+
Sbjct: 553  FLKLRQSLGSQGLGAYGPLLV 573


>emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score =  480 bits (1236), Expect = e-159
 Identities = 271/554 (48%), Positives = 375/554 (67%), Gaps = 21/554 (3%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKE 341
            PPRTH +      S L L++  AP  +S + TT+A+ FPTSVL+QEQR E +P  Q LK+
Sbjct: 15   PPRTHFRN--SSSSVLMLHDQVAPAVAS-IPTTIARKFPTSVLLQEQRDEYRPFPQALKD 71

Query: 342  EKSSPETVDNDEVDAISS---------DQYLKEFQSQLLQWPGLW--LPS-HTREKS-LS 482
            E++   T++  +++ + S         +QY+  F+ QLL  PGLW  LPS  T EKS  S
Sbjct: 72   ERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFS 131

Query: 483  SSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVS 638
            SS M+         MD +   V+ALAKKALSAS +A SL ++ + +G D ++S + SL +
Sbjct: 132  SSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGA 191

Query: 639  TNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHD 818
             +   L  ++ K V+STRLLER+SK+R+  K  V V E++ S + E ++K + +  +  D
Sbjct: 192  ISSPNLPLEE-KTVRSTRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKIN-EGYDPKD 247

Query: 819  PLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLS 998
            PLR+FL  P TR           I  I+  M+LEE + R      REPT+VEWAEA  LS
Sbjct: 248  PLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLS 307

Query: 999  SHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKP 1178
               L+SQLH GN SR+KLI ANLRMVV+IAKQY+GRGL+LQDLLQEGSMGLM SV+KFKP
Sbjct: 308  CQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKP 367

Query: 1179 QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQK 1358
             AGCRFA+YAYWWIRQ++R+AIFQ+S+ IRLPE +Y+++ KV EAKR  I+EG+H+PT++
Sbjct: 368  NAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKE 427

Query: 1359 QIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMR 1538
            +IA++ G+T+EKLQ+L    ++ LS+Q+PVWA+                 D S +KQ+MR
Sbjct: 428  EIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMR 487

Query: 1539 NHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQY 1718
             H+ NLL VL PKER++IRLR+GIG  + ++L++IG++ G SKER+RQ+E RAL KLKQ 
Sbjct: 488  QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 547

Query: 1719 SESHGLDAYKELLI 1760
              SHGL++Y +LL+
Sbjct: 548  LSSHGLESYTDLLV 561


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 567

 Score =  480 bits (1236), Expect = e-159
 Identities = 271/554 (48%), Positives = 375/554 (67%), Gaps = 21/554 (3%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKE 341
            PPRTH +      S L L++  AP  +S + TT+A+ FPTSVL+QEQR E +P  Q LK+
Sbjct: 21   PPRTHFRN--SSSSVLMLHDQVAPAVAS-IPTTIARKFPTSVLLQEQRDEYRPFPQALKD 77

Query: 342  EKSSPETVDNDEVDAISS---------DQYLKEFQSQLLQWPGLW--LPS-HTREKS-LS 482
            E++   T++  +++ + S         +QY+  F+ QLL  PGLW  LPS  T EKS  S
Sbjct: 78   ERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFS 137

Query: 483  SSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVS 638
            SS M+         MD +   V+ALAKKALSAS +A SL ++ + +G D ++S + SL +
Sbjct: 138  SSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGA 197

Query: 639  TNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHD 818
             +   L  ++ K V+STRLLER+SK+R+  K  V V E++ S + E ++K + +  +  D
Sbjct: 198  ISSPNLPLEE-KTVRSTRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKIN-EGYDPKD 253

Query: 819  PLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLS 998
            PLR+FL  P TR           I  I+  M+LEE + R      REPT+VEWAEA  LS
Sbjct: 254  PLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLS 313

Query: 999  SHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKP 1178
               L+SQLH GN SR+KLI ANLRMVV+IAKQY+GRGL+LQDLLQEGSMGLM SV+KFKP
Sbjct: 314  CQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKP 373

Query: 1179 QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQK 1358
             AGCRFA+YAYWWIRQ++R+AIFQ+S+ IRLPE +Y+++ KV EAKR  I+EG+H+PT++
Sbjct: 374  NAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKE 433

Query: 1359 QIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMR 1538
            +IA++ G+T+EKLQ+L    ++ LS+Q+PVWA+                 D S +KQ+MR
Sbjct: 434  EIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMR 493

Query: 1539 NHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQY 1718
             H+ NLL VL PKER++IRLR+GIG  + ++L++IG++ G SKER+RQ+E RAL KLKQ 
Sbjct: 494  QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 553

Query: 1719 SESHGLDAYKELLI 1760
              SHGL++Y +LL+
Sbjct: 554  LSSHGLESYTDLLV 567


>gb|POO01707.1| RNA polymerase sigma factor [Trema orientalis]
          Length = 566

 Score =  480 bits (1235), Expect = e-159
 Identities = 272/558 (48%), Positives = 369/558 (66%), Gaps = 25/558 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSALKLYEPAAPTH----SSMLATTLAQHFPTSVLIQEQRRESKPLLQ 329
            PPRTHL+      S+      +A T     +S+ AT++AQ F TSVL+QEQR E +PLL+
Sbjct: 15   PPRTHLRNYLSSSSSSSSCSASASTSGATVTSLPATSVAQRFSTSVLLQEQRDELRPLLR 74

Query: 330  TLKEEKSSPETVDNDEVDA----------ISSDQYLKEFQSQLLQWPGLW--LPS-HTRE 470
             +KEEK+S   +D  + D+            + + + EF+   + WPG W   PS  T+ 
Sbjct: 75   VIKEEKTSQGVLDRKQTDSGTLVHEDKTNADTSRLMWEFEHPSIHWPGFWHGFPSLQTKV 134

Query: 471  KSLSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVAS 626
             S +S TM+P        +D  +   IALAKKAL AS EAASLV++++S+  D D+ V+ 
Sbjct: 135  NSSASLTMEPTTAGSKKNVDVGLSDAIALAKKALQASKEAASLVEESKSVEADSDDMVSL 194

Query: 627  SLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDA 806
            SL +  PG++E    K V+STRLLER+SK+RK  KSNV+  E N+S++    +K+  +  
Sbjct: 195  SLANF-PGKVE----KTVRSTRLLERRSKKRKVPKSNVLFYE-NSSSRSADIRKSLGERF 248

Query: 807  NLHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEA 986
            +  DPLR+FLA P TR           I  ++  MKLE+ + R   +F REPTLVEWAEA
Sbjct: 249  DSDDPLRLFLAGPETRQLLNFEEESELIGRVQDVMKLEQVKDRLQSEFGREPTLVEWAEA 308

Query: 987  ASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQ 1166
              LS   L+SQ+  G SSREKLI +NLRMVVYIAKQY+GRG+ LQDL+Q GSMGLM+SV+
Sbjct: 309  VGLSCRILQSQIRSGTSSREKLIYSNLRMVVYIAKQYQGRGIGLQDLMQVGSMGLMKSVE 368

Query: 1167 KFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHE 1346
            KFKPQAGCRFA+YAYWWIRQ+IR+AIFQ+S+ IRLPE +YT++ KV EAKR CI+EGNH 
Sbjct: 369  KFKPQAGCRFASYAYWWIRQTIRKAIFQHSRTIRLPENMYTLLGKVLEAKRLCIQEGNHN 428

Query: 1347 PTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASK 1526
            P+++ +A   G+TVE+L+KL  I +  LS+Q+PVWA+                 D S +K
Sbjct: 429  PSKEDLARCVGITVERLEKLLCITRRPLSMQQPVWADQETTFQEVTADTGIEIPDLSVTK 488

Query: 1527 QIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFK 1706
            Q+MR H+  LL  LN +ER++IRLR+GI    +KSL++IG + G+SKER+RQ+ESRAL+K
Sbjct: 489  QLMRQHVRGLLRNLNVRERQIIRLRFGIEDGTQKSLSEIGNLFGLSKERVRQLESRALYK 548

Query: 1707 LKQYSESHGLDAYKELLI 1760
            LKQ   S  L AY +LL+
Sbjct: 549  LKQCLVSQDLGAYADLLV 566


>ref|XP_020422239.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Prunus
            persica]
 gb|ONI03022.1| hypothetical protein PRUPE_6G234100 [Prunus persica]
          Length = 568

 Score =  479 bits (1234), Expect = e-159
 Identities = 279/561 (49%), Positives = 373/561 (66%), Gaps = 28/561 (4%)
 Frame = +3

Query: 162  PPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL 326
            P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KPLL
Sbjct: 15   PSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLL 73

Query: 327  QTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE-- 470
              LKE+K+S   +D  +++   ++  D  + +F       + QLL    L + S  +   
Sbjct: 74   HVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSSLQTGA 133

Query: 471  --------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVAS 626
                    +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S++ 
Sbjct: 134  KPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESLSL 193

Query: 627  SLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKTSY 797
             L +    E +T     V+STR+LER+ KR   RK  KS VI  ESN+ T  +  KK S 
Sbjct: 194  GLANWIVEEEKT-----VRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKIS- 247

Query: 798  KDANLHDPLRMFLARPVTRXXXXXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEW 977
            +  N +DPLR+FL  P TR           IA ++   KLEE +SR   QF REPTL+EW
Sbjct: 248  EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEW 307

Query: 978  AEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMR 1157
            AEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+
Sbjct: 308  AEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMK 367

Query: 1158 SVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREG 1337
            SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+EG
Sbjct: 368  SVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEG 427

Query: 1338 NHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDAS 1517
            NH P ++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                 D S
Sbjct: 428  NHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVS 487

Query: 1518 ASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRA 1697
             +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ESRA
Sbjct: 488  VAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRA 547

Query: 1698 LFKLKQYSESHGLDAYKELLI 1760
              KL+Q   S GL AY  LL+
Sbjct: 548  FLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nicotiana sylvestris]
 ref|XP_016467963.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Nicotiana tabacum]
          Length = 545

 Score =  478 bits (1230), Expect = e-158
 Identities = 262/533 (49%), Positives = 358/533 (67%), Gaps = 21/533 (3%)
 Frame = +3

Query: 222  PAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN---------- 371
            P   +H + L+ +      +SV+  EQ+ E++  L ++KEEK+S  T+D           
Sbjct: 13   PTTFSHKTQLSRSSPSSISSSVINPEQQFENRLQLHSVKEEKTSLATIDRRLVEAASSAM 72

Query: 372  DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQPMDAEVK 518
            +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    + M+ E  
Sbjct: 73   EENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKVPLTLDTESLSDKGEKLMNFEPH 132

Query: 519  QVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKFVKSTRLL 698
             V+ALA+KAL AS EAA L +D++ +G + D+S+  +L+STN  + + K  +  +STRLL
Sbjct: 133  NVVALARKALLASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTDDKLKDQRIARSTRLL 192

Query: 699  ERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRXXXXXXXX 878
            ER+SK+R    S   V+E+N S +P+  ++ + +  +L+DPLRMFL  P TR        
Sbjct: 193  ERRSKKRGAPTSKHQVQETNRSERPDVRRRVN-ESIDLNDPLRMFLWGPETRQLLTVKEE 251

Query: 879  XXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNSSREKLIC 1058
               I  I+  MKL+E + R   QF+REPTL+EWAEAA L+S EL+SQL  G SSR+KLI 
Sbjct: 252  SELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLIN 311

Query: 1059 ANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWWIRQSIRR 1238
            ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWWIRQ +R+
Sbjct: 312  ANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRK 371

Query: 1239 AIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKLQKLRSIQ 1418
            AIFQ+S+ IRLPE VY ++ KV +AK+ CI++GNH PT++ IA  AGM+VE+LQ L S  
Sbjct: 372  AIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAA 431

Query: 1419 KITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLLSVLNPKERKVIRL 1598
            +  LS+Q+ VW +                 + S SKQ+MR H+ NLL+VL+PKERK+IRL
Sbjct: 432  RTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRL 491

Query: 1599 RYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 1757
            R+GIG   RKSL++IG + G+SKER+RQ+ESRAL++LKQ   SHGLDAY +LL
Sbjct: 492  RFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAYNDLL 544


>ref|XP_021827463.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Prunus
            avium]
          Length = 539

 Score =  478 bits (1229), Expect = e-158
 Identities = 270/539 (50%), Positives = 365/539 (67%), Gaps = 23/539 (4%)
 Frame = +3

Query: 213  LYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDNDEVD--- 383
            L+E A P  +S+  T++A+HFPTSVL+QEQR E KPLL  LKE+K+S  T+D  +++   
Sbjct: 2    LHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEATLDRMQIETGA 61

Query: 384  AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE----------KSLSSSTMQPMDAE 512
            ++  D  + +F       + QLL    L + S  +           +SL++++ + MD E
Sbjct: 62   SVHEDLDIDDFYPLVNGSKPQLLNPDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVE 121

Query: 513  VKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKFVKSTR 692
               V+ALAKKALSAS EAASL +D++S+G D D S++  L  T+      ++   V+STR
Sbjct: 122  PCNVVALAKKALSASREAASLAEDSQSMGADFDESLSLGLGYTSLANWIVEEETTVRSTR 181

Query: 693  LLERQSKR---RKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRXXX 863
            +LER+ KR   RK  KS VI  ESN+ T  +  KK S +  N +DPLR+FL  P TR   
Sbjct: 182  ILERRRKRIKTRKVPKSKVIGHESNSFTSSDVRKKIS-EGFNPNDPLRLFLWGPETRQLL 240

Query: 864  XXXXXXXXIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNSSR 1043
                    IA ++   KLEE ++R   QF REPTL+EWAEA  +S   LKSQL  G SSR
Sbjct: 241  TAKEEAELIARVQDLFKLEEVKTRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSR 300

Query: 1044 EKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWWIR 1223
            EKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+SV+KFKPQAGCRFATYAYWWIR
Sbjct: 301  EKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIR 360

Query: 1224 QSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKLQK 1403
            Q++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+EGNH P+++++A + G+TVEKL+K
Sbjct: 361  QTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPSKEELARRVGITVEKLEK 420

Query: 1404 LRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXXDASASKQIMRNHITNLLSVLNPKER 1583
            L    ++ LS+Q+PVWA+                 D S +KQ+MR H+ +LLS+LN +ER
Sbjct: 421  LLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRER 480

Query: 1584 KVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELLI 1760
            ++IRLRYGI    ++SL++IG M G+SKER+RQ+ESRA  KL+Q   S GL AY  LL+
Sbjct: 481  QIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 539