BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00002679
         (389 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX78425.1| DNA-directed RNA polymerase ii subunit rpb1-like ...   121   4e-33
gb|EEE68064.1| hypothetical protein OsJ_26074 [Oryza sativa Japo...   120   1e-32
gb|PON82669.1| DNA-directed RNA polymerase, subunit beta-prime [...   127   3e-32
gb|PON49951.1| DNA-directed RNA polymerase, subunit gamma [Paras...   127   3e-32
ref|XP_018807320.1| PREDICTED: DNA-directed RNA polymerase II su...   129   6e-32
gb|OMO55766.1| RNA polymerase II, heptapeptide repeat, eukaryoti...   129   6e-32
ref|XP_021275284.1| DNA-directed RNA polymerase II subunit 1-lik...   127   8e-32
ref|XP_021908335.1| DNA-directed RNA polymerase II subunit 1 [Ca...   128   1e-31
gb|PRQ47312.1| putative DNA-directed RNA polymerase [Rosa chinen...   128   1e-31
ref|XP_024183087.1| LOW QUALITY PROTEIN: DNA-directed RNA polyme...   128   1e-31
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...   128   1e-31
ref|XP_007203058.1| DNA-directed RNA polymerase II subunit 1 [Pr...   128   1e-31
emb|CBI18915.3| unnamed protein product, partial [Vitis vinifera]     127   1e-31
gb|PNT36093.1| hypothetical protein POPTR_005G107600v3 [Populus ...   127   1e-31
gb|PNT36094.1| hypothetical protein POPTR_005G107600v3 [Populus ...   127   1e-31
ref|XP_022034547.1| DNA-directed RNA polymerase II subunit 1 [He...   127   1e-31
ref|XP_021819526.1| DNA-directed RNA polymerase II subunit 1 [Pr...   127   1e-31
ref|XP_011022252.1| PREDICTED: DNA-directed RNA polymerase II su...   127   1e-31
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...   127   1e-31
ref|XP_020250011.1| DNA-directed RNA polymerase II subunit 1 [As...   127   1e-31

>gb|PNX78425.1| DNA-directed RNA polymerase ii subunit rpb1-like protein [Trifolium
           pratense]
 gb|PNX83098.1| DNA-directed RNA polymerase ii subunit rpb1-like protein [Trifolium
           pratense]
          Length = 119

 Score =  121 bits (304), Expect = 4e-33
 Identities = 55/69 (79%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT++MA CPG+F +LELAK MFHI F+KTVLSIMRCVCF
Sbjct: 48  KIGGLSDPRLGTIDRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>gb|EEE68064.1| hypothetical protein OsJ_26074 [Oryza sativa Japonica Group]
          Length = 112

 Score =  120 bits (300), Expect = 1e-32
 Identities = 54/69 (78%), Positives = 61/69 (88%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRK+KCETC + MA CPG+F HLELAK MFHI F+KTVLSIMRCVCF
Sbjct: 7   KPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCF 66

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 67  NCSKILADE 75


>gb|PON82669.1| DNA-directed RNA polymerase, subunit beta-prime [Trema orientalis]
          Length = 460

 Score =  127 bits (320), Expect = 3e-32
 Identities = 58/75 (77%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           +M  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI F+KTVLSI
Sbjct: 42  MMGGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSI 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>gb|PON49951.1| DNA-directed RNA polymerase, subunit gamma [Parasponia andersonii]
          Length = 460

 Score =  127 bits (320), Expect = 3e-32
 Identities = 58/75 (77%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           +M  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI F+KTVLSI
Sbjct: 42  MMGGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSI 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>ref|XP_018807320.1| PREDICTED: DNA-directed RNA polymerase II subunit 1, partial
           [Juglans regia]
          Length = 1671

 Score =  129 bits (323), Expect = 6e-32
 Identities = 63/82 (76%), Positives = 68/82 (82%), Gaps = 6/82 (7%)
 Frame = -3

Query: 312 QIMESEAKE------AGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAF 151
           QI  SE  E      AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI F
Sbjct: 35  QIEHSETMERGKPKIAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGF 94

Query: 150 MKTVLSIMRCVCFSCSKLLADE 85
           MKTVLSIMRCVCF+CSK+LADE
Sbjct: 95  MKTVLSIMRCVCFNCSKILADE 116


>gb|OMO55766.1| RNA polymerase II, heptapeptide repeat, eukaryotic [Corchorus
           capsularis]
          Length = 2132

 Score =  129 bits (323), Expect = 6e-32
 Identities = 59/69 (85%), Positives = 64/69 (92%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>ref|XP_021275284.1| DNA-directed RNA polymerase II subunit 1-like [Herrania umbratica]
          Length = 545

 Score =  127 bits (319), Expect = 8e-32
 Identities = 58/69 (84%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>ref|XP_021908335.1| DNA-directed RNA polymerase II subunit 1 [Carica papaya]
          Length = 1366

 Score =  128 bits (321), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 64/69 (92%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K AGLSDPRLGT+DRK+KCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KPAGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>gb|PRQ47312.1| putative DNA-directed RNA polymerase [Rosa chinensis]
          Length = 1740

 Score =  128 bits (321), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           ++  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSI
Sbjct: 42  MLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSI 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>ref|XP_024183087.1| LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit 1 [Rosa
           chinensis]
          Length = 1842

 Score =  128 bits (321), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           ++  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSI
Sbjct: 42  MLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSI 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Fragaria vesca
           subsp. vesca]
 ref|XP_011461993.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Fragaria vesca
           subsp. vesca]
          Length = 1842

 Score =  128 bits (321), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           ++  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSI
Sbjct: 42  MLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSI 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>ref|XP_007203058.1| DNA-directed RNA polymerase II subunit 1 [Prunus persica]
 ref|XP_020423833.1| DNA-directed RNA polymerase II subunit 1 [Prunus persica]
 gb|ONH97196.1| hypothetical protein PRUPE_7G175200 [Prunus persica]
          Length = 1844

 Score =  128 bits (321), Expect = 1e-31
 Identities = 58/75 (77%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           ++  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSI
Sbjct: 42  MLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSI 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>emb|CBI18915.3| unnamed protein product, partial [Vitis vinifera]
          Length = 1565

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>gb|PNT36093.1| hypothetical protein POPTR_005G107600v3 [Populus trichocarpa]
          Length = 1723

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>gb|PNT36094.1| hypothetical protein POPTR_005G107600v3 [Populus trichocarpa]
          Length = 1823

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>ref|XP_022034547.1| DNA-directed RNA polymerase II subunit 1 [Helianthus annuus]
 gb|OTG28102.1| putative RNA polymerase II large subunit [Helianthus annuus]
          Length = 1824

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 64/69 (92%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K AGLSDPRLGT+DRK+KCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KVAGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>ref|XP_021819526.1| DNA-directed RNA polymerase II subunit 1 [Prunus avium]
          Length = 1837

 Score =  127 bits (320), Expect = 1e-31
 Identities = 57/75 (76%), Positives = 66/75 (88%)
 Frame = -3

Query: 309 IMESEAKEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSI 130
           ++  + K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLS+
Sbjct: 42  MLGGKPKTAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSV 101

Query: 129 MRCVCFSCSKLLADE 85
           MRCVCF+CSK+L DE
Sbjct: 102 MRCVCFNCSKILVDE 116


>ref|XP_011022252.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Populus
           euphratica]
          Length = 1837

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
           [Populus trichocarpa]
 gb|PNT36095.1| hypothetical protein POPTR_005G107600v3 [Populus trichocarpa]
          Length = 1837

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 63/69 (91%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K  GLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVLSIMRCVCF
Sbjct: 48  KPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116


>ref|XP_020250011.1| DNA-directed RNA polymerase II subunit 1 [Asparagus officinalis]
 gb|ONK55404.1| uncharacterized protein A4U43_UnF3880 [Asparagus officinalis]
          Length = 1843

 Score =  127 bits (320), Expect = 1e-31
 Identities = 58/69 (84%), Positives = 64/69 (92%)
 Frame = -3

Query: 291 KEAGLSDPRLGTMDRKMKCETCTSNMAHCPGYFRHLELAKLMFHIAFMKTVLSIMRCVCF 112
           K AGLSDPRLGT+DRKMKCETCT+NMA CPG+F HLELAK MFHI FMKTVL+IMRCVCF
Sbjct: 48  KVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCF 107

Query: 111 SCSKLLADE 85
           +CSK+LADE
Sbjct: 108 NCSKILADE 116