BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum22_contig00000267
         (4422 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]              1297   0.0  
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]  1247   0.0  
gb|PHT39301.1| hypothetical protein CQW23_22874 [Capsicum baccatum]  1246   0.0  
gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposo...  1210   0.0  
gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]   1181   0.0  
emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]  1165   0.0  
gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...  1130   0.0  
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...  1126   0.0  
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...  1126   0.0  
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc...  1123   0.0  
emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa]                       1122   0.0  
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...  1117   0.0  
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc...  1117   0.0  
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]    1117   0.0  
gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group] ...  1116   0.0  
gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subc...  1115   0.0  
dbj|BAB03249.1| polyprotein [Oryza sativa]                           1115   0.0  
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc...  1114   0.0  
gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subc...  1113   0.0  
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]       1111   0.0  

>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score = 1297 bits (3356), Expect = 0.0
 Identities = 672/1336 (50%), Positives = 904/1336 (67%), Gaps = 11/1336 (0%)
 Frame = +1

Query: 352  KVFCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQ 531
            K+F D+SK+E   G N++RW +++    +   + + L+   P + T A            
Sbjct: 28   KLFPDVSKIEVFTGQNFRRWQERVSTLLDMYGVAHALTTAKPDSTTAAK----------- 76

Query: 532  NEIDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXX 711
             ++D+        N+  R  LL+ +SN LFD++ + K+AK IW++L              
Sbjct: 77   -QVDDWIHA----NKVCRHTLLSVLSNDLFDVYASYKNAKDIWDSLILKYTAEDIVRQRF 131

Query: 712  VVGNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQ 891
            V+  + R++M+  K I  Q++ Y  L+ ++  E +K+ +   + +L+EK P  W DY+ Q
Sbjct: 132  VIAKYYRWEMIKGKDIKIQINEYHKLIEDIKTESIKLPDEFVSELLIEKLPQSWTDYKQQ 191

Query: 892  LKHKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKYVK 1071
            LKH+++ +SL +LI+H+  E+ NR +         S KAN++E     K   K   K+  
Sbjct: 192  LKHRQKQMSLSDLITHIIIEDTNRKECAAAKAKALSAKANVIEDKPAPKRYEK---KF-- 246

Query: 1072 DHQRK---NFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLX 1242
            DH++K    F+     +   K K +C+VCGK GH A QC+ R            P+ANL 
Sbjct: 247  DHKKKPNNKFSRPSGTNPTFKKKGNCFVCGKPGHHAPQCRHRAKND------YPPKANLA 300

Query: 1243 XXXXXXXXXXX-TNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGG-QVYMGNDGTA 1416
                         NLV + S W++DSGA+RH+C NR +F  +  V DG  QVY+G+  T 
Sbjct: 301  EGEDTIVAVVSQVNLVTNVSKWVVDSGATRHICANRNVFTSYTSVGDGEEQVYLGDSRTT 360

Query: 1417 RVIGKGKVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNND 1596
             V+GKGKVLLK TSGKTLALN+VL+VPS+R N+VS +LL + G+KV+ ESDK++IT+NN 
Sbjct: 361  PVLGKGKVLLKLTSGKTLALNDVLHVPSIRVNLVSVALLSKVGVKVSFESDKIVITKNNV 420

Query: 1597 FVGKGYVIDGLFVLNTDPSTNENSASAYIVESVNMWHGRLGHLNIASIKRLKTMNLINVV 1776
            FVGKGY   GLFVLN     NE+++SAYIV+S ++WH RLGH+N + + +L+ + LIN+ 
Sbjct: 421  FVGKGYCDQGLFVLNISEIMNESTSSAYIVDSYDIWHARLGHVNSSYVIKLQRLGLINMH 480

Query: 1777 DSKEFSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDD 1956
            D KE SKC                     ++L LIH+DLAD K TMS+GGK Y++TF+DD
Sbjct: 481  D-KESSKC--------------------DKILGLIHTDLADLKQTMSRGGKNYFVTFIDD 519

Query: 1957 YSRYTKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGI 2136
            +SRYTKVYL++ KDEA +MFL +KAE ENQL+++IKR+RSDRGGEY      D+C K GI
Sbjct: 520  FSRYTKVYLIKHKDEAFDMFLTYKAEVENQLNKKIKRIRSDRGGEYV--LFNDYCVKEGI 577

Query: 2137 IHEFSAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKL 2316
            IHE + PY+P+ NGVAERKNRTLKEMMNAMLISS   DN+WGE++L+AC++ N++PH+K 
Sbjct: 578  IHEVTPPYSPESNGVAERKNRTLKEMMNAMLISSNAPDNLWGESLLTACFLQNRIPHRKT 637

Query: 2317 DKTPYELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMC 2496
             KTPYELWKG+ PNLKYLRVWG LAKV LPD +K  IG KT DC+F+GYA   AAYRF+ 
Sbjct: 638  GKTPYELWKGYQPNLKYLRVWGSLAKVMLPDPKKRKIGSKTSDCMFLGYAEHSAAYRFLV 697

Query: 2497 LDD-----NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQE 2661
            L+      N+I E+++AEFFE  FP K +  S+                    S  +   
Sbjct: 698  LNSDIIERNTIVETKNAEFFEHIFPLKSSGTSE----------------QPIDSVSDTLS 741

Query: 2662 NEFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDAS 2841
             + RRSKR+R E+SFG DF T                   +L+E DP ++ EA ++ DA 
Sbjct: 742  EDVRRSKRQRKETSFGNDFYT-------------------YLVENDPISFVEATSAPDAK 782

Query: 2842 FWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYS 3021
             W +AIK+EL+SI  N+TW LVDLPKG KPI CKWIFK+K  PD +IEK+KARLV  G++
Sbjct: 783  HWDKAIKTELESIKKNNTWTLVDLPKGAKPIGCKWIFKKKYHPDGSIEKYKARLVAKGFT 842

Query: 3022 QKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEG- 3198
            QK  ID+FDT++PVT++++IR L+ALASI++LVIHQMDVKT FLNG+LEEEIYM Q EG 
Sbjct: 843  QKHNIDYFDTFAPVTRISSIRVLLALASIHKLVIHQMDVKTTFLNGELEEEIYMTQPEGC 902

Query: 3199 LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVII 3378
            +    K KVCKL KSLYGLKQAPKQW+ K D+ L+  GF  N +D CVYS+    + VII
Sbjct: 903  VVLGQKEKVCKLLKSLYGLKQAPKQWHEKLDNVLLCEGFSTNDADKCVYSRSENGEYVII 962

Query: 3379 CLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKVRKTENGYSLCQSHYIE 3558
            CLYVDDMLI GT   +V +TK FL S+F+MKD+GE  VILG+K+ +  +   L Q  Y E
Sbjct: 963  CLYVDDMLIFGTCNDIVFKTKLFLGSKFEMKDMGEASVILGVKIIRKGDSILLSQEKYTE 1022

Query: 3559 KVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVS 3738
            K+LK+F Y+D   V TPYD++  LKKN+G  ISQ +YA+IIGS++ LM+++RPDIAYAV 
Sbjct: 1023 KLLKKFGYYDFKSVSTPYDANSKLKKNRGESISQTQYAQIIGSLLHLMSFSRPDIAYAVG 1082

Query: 3739 RLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTS 3918
            RLSR T  P+ +HW+AL RL++YL+GT+++ ++++ FP VLEGY DANW+SD+DE  STS
Sbjct: 1083 RLSRCTQCPSQDHWEALARLMKYLRGTMDYAIEYSGFPAVLEGYSDANWISDSDETKSTS 1142

Query: 3919 GYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPV 4098
            GYVFTLGG A++W+S++QT IARSTME+EF+ALE+AG EAEWLKN LA+IPL  K    V
Sbjct: 1143 GYVFTLGGGAVTWRSARQTIIARSTMESEFVALEMAGSEAEWLKNFLANIPLGMKPTPSV 1202

Query: 4099 SIHCDSQAAIGIAKNSIYNGKKRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGL 4278
            S+HCD Q+AI IAKN  YNGK RHI++RH +VKQLLK+G IS+DYV+SE +LADP TK L
Sbjct: 1203 SMHCDCQSAIAIAKNKSYNGKNRHIQLRHNLVKQLLKSGTISIDYVKSERDLADPLTKPL 1262

Query: 4279 PRKVVLESSRGMGLKP 4326
             RK++LE+SRGMGLKP
Sbjct: 1263 GRKMILETSRGMGLKP 1278


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score = 1247 bits (3226), Expect = 0.0
 Identities = 642/1336 (48%), Positives = 892/1336 (66%), Gaps = 18/1336 (1%)
 Frame = +1

Query: 373  KLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQ-NETTANISVITLIGSSQNEIDEG 549
            K E   G N+KRW +K+L +   L +   L++DAP+  E   +I VI+ I +        
Sbjct: 40   KPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDA-------- 91

Query: 550  TRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGNWL 729
               ++  +   R +++N +++SL++++ +KK+AK +WE+L+             VVG +L
Sbjct: 92   ---WKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFL 148

Query: 730  RFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHKKR 909
             ++MVD K ++ QV   + ++ E+  EGM + E  Q   ++EK P  W D++N LKHK++
Sbjct: 149  DYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYLKHKRK 208

Query: 910  DLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSK---NRNKGKEKYVKDHQ 1080
            ++S+++LI  +R EE NR  +K+ +++ +  KAN VE   +SK   N NKGK        
Sbjct: 209  EMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGS------ 262

Query: 1081 RKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXXX 1260
                 P+    K  K +  C+ CGK GHK+  C+  K  + +   +I             
Sbjct: 263  --KLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNVYDIDLT 320

Query: 1261 XXXXXTNLV-EDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGK 1437
                  NLV  +   W +D+GA+RH+C+++++F  FE + +G +V+MGN  T+ + G+GK
Sbjct: 321  AVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGK 380

Query: 1438 VLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYV 1617
            V+LK TSGK L L NVLYVP +R+N+VSGSLL   G ++   S+KV+++++  +VGKGY+
Sbjct: 381  VILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGKGYM 440

Query: 1618 IDGLFVLNT----DPSTNENSASAYIVESVNMWHGRLGHLNIASIKRLKTMNLINVVDSK 1785
             DG++ LN       + N+ S S Y++ES N+WHGRLGH+N  +++RL  +N I      
Sbjct: 441  SDGMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVNYDTLRRLINLNHIPTFQIN 500

Query: 1786 EFSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSR 1965
               KC  CVEAK  + SF++V  ++T+ L+LIHSD+ D K   ++GG KY+ITFVDD ++
Sbjct: 501  SNHKCETCVEAKLTRSSFQSVE-RNTEPLDLIHSDICDLKFVQTRGGNKYFITFVDDSTK 559

Query: 1966 YTKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHE 2145
            Y  VYLL+SKDEA E F+ +K E ENQL+++IK LRSDRGGEY + F+ D C ++GIIHE
Sbjct: 560  YCYVYLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFV-DICAQHGIIHE 618

Query: 2146 FSAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKT 2325
             +APY+PQ NGVAERKNRTLKEMMNAMLISS L  NMWGEA+L+A Y+LNKVP KK +KT
Sbjct: 619  TTAPYSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKT 678

Query: 2326 PYELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD 2505
            PYELWKG  P+  YLR+WGCLAKVA+P  +K  IGPKT DC+FIGYA +  AYRF+  + 
Sbjct: 679  PYELWKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYES 738

Query: 2506 N-------SICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQ-E 2661
            N       +I ESR+A FFE  FP K  +                      S + N + E
Sbjct: 739  NIPDIHKNTIMESRNASFFEDVFPCKSKEEPSSSKRMLE------------SQDQNEEVE 786

Query: 2662 NEFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDAS 2841
             E RRSKR R E SFGPDF+T                   F+LE +P+T+KEA+ S +  
Sbjct: 787  VEPRRSKRVRTEKSFGPDFLT-------------------FMLEGEPQTFKEAVNSTEGL 827

Query: 2842 FWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYS 3021
             WKEAIKSE+DSI+ N TW+LVDLP GCKP+  KWIFKRKM+ D +I+K+KARLV+ GY 
Sbjct: 828  MWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYR 887

Query: 3022 QKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEGL 3201
            Q +G+D+FDTYSPVT++ +IR ++A+A++  L IHQMD+K          EIYMEQ EG 
Sbjct: 888  QTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDMK----------EIYMEQPEGF 937

Query: 3202 AEPNKNK-VCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVII 3378
            + P + K VCKL KSLYGLKQAPKQW+ KFD+ ++S+GF +N  D CVY K      VI+
Sbjct: 938  SAPGQEKKVCKLVKSLYGLKQAPKQWHEKFDNVMLSHGFKINECDKCVYVKDTEHGYVIV 997

Query: 3379 CLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKVRKTENGYSLCQSHYIE 3558
            CLYVDDMLI+G++  ++  TK  L+S+FDMKD+G  DVILGIK+++T N   L QSHY++
Sbjct: 998  CLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQSHYVD 1057

Query: 3559 KVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVS 3738
            K+L +F+  +    +TP D +  L KNKG  +SQ EY++IIGS+M+LM+ TRPDIAYAV 
Sbjct: 1058 KILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIAYAVG 1117

Query: 3739 RLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTS 3918
            +LSRYT NP  +HW  + R+L+YL+ T ++ L + ++P VLEGY DANW+S+  +  S S
Sbjct: 1118 KLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLHYTRYPAVLEGYSDANWISNVKDSKSHS 1177

Query: 3919 GYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPV 4098
            GYVFTLGG A+SWKSSKQT IARSTME+EFIAL+  G+EAEWL++ L DIP W K + P+
Sbjct: 1178 GYVFTLGGAAVSWKSSKQTVIARSTMESEFIALDKCGEEAEWLRHFLEDIPRWSKPVPPI 1237

Query: 4099 SIHCDSQAAIGIAKNSIYNGKKRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGL 4278
             IHCDSQ+AIG A++++YNGK RHIR RH  ++QLL  GVIS+DYV+S++N+ADP TKGL
Sbjct: 1238 CIHCDSQSAIGRAQSNMYNGKSRHIRRRHNTIRQLLSTGVISVDYVKSKDNIADPLTKGL 1297

Query: 4279 PRKVVLESSRGMGLKP 4326
             R++V +SS GM LKP
Sbjct: 1298 NRELVEKSSXGMXLKP 1313


>gb|PHT39301.1| hypothetical protein CQW23_22874 [Capsicum baccatum]
          Length = 2088

 Score = 1246 bits (3224), Expect = 0.0
 Identities = 636/1322 (48%), Positives = 884/1322 (66%), Gaps = 10/1322 (0%)
 Frame = +1

Query: 391  GTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNEIDEGTRKFEKD 570
            G ++KRW +K+  +   L +    S+DAP+             G+S  +       ++  
Sbjct: 518  GIDFKRWQQKMFFYLTTLCLQRFTSKDAPEVPE----------GTSDKDRFVIVEAWKHS 567

Query: 571  NRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGNWLRFQMVDD 750
            +   R ++L+ + + L++++   K++K +WE LE             +V  +L F+M+D 
Sbjct: 568  DFLCRNYILSGLQDDLYNVYSGTKTSKELWEALERKYKTEDAGIKKFLVARFLDFKMIDS 627

Query: 751  KPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHKKRDLSLQEL 930
            K ++ QV   + ++ ++L EG+ + +  Q   ++EK P LW D++N LKHK++++++++L
Sbjct: 628  KSVVSQVQELQVIIHDLLAEGLIVNDAFQVAAIVEKLPPLWKDFKNYLKHKRKEMTVEDL 687

Query: 931  ISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKYVKDHQRKNFTPRQND 1110
            I  +R EE N+  +++   +++   A++VE    +  + K  E +  +H +K F      
Sbjct: 688  IVRLRIEEDNKAAERRSKGNSTMNGAHIVEDGQNNSKKRKNVE-HGSNHPKKKF------ 740

Query: 1111 HKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQ-RLIKPQANLXXXXXXXXXXXXTNLV 1287
                  K  C+ CGK GHK+  C+  K  + ++Q  LI+   +              N+V
Sbjct: 741  ------KGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTEC---NMV 791

Query: 1288 EDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGKVLLKFTSGKT 1467
             +  AW MDSGA+RH+C ++ LF  +        +YM N  TA+V G GKV LK TSGK 
Sbjct: 792  GNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMTSGKV 851

Query: 1468 LALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVIDGLFVLNT- 1644
            L LNNVLYVP LRRN++S SLL + G K    S K+++++   +VGKGY+ +GL+ +N  
Sbjct: 852  LTLNNVLYVPELRRNLISVSLLDKNGFKCVTVSGKIVVSKGEMYVGKGYLEEGLYKMNVM 911

Query: 1645 DPSTNENSASAYIVESVNMWHGRLGHLNIASIKRLKTMNLINVVDSKEFSKCAICVEAKH 1824
            +   N+NS S+Y++ES N+WH RLGH+N  ++++L  + ++   +  + SKC  CVE+K+
Sbjct: 912  NVEMNKNSNSSYLLESYNLWHERLGHVNYKTLRKLINLEVLPNFECNK-SKCQTCVESKY 970

Query: 1825 AKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRYTKVYLLRSKDEA 2004
            AK  +K+V   S  L +LIH+D+ D K+T S+GGKKY+ITF+DD +RY  VYLL SKDEA
Sbjct: 971  AKHPYKSVERNSNPL-DLIHTDICDMKSTPSRGGKKYFITFIDDCTRYCYVYLLNSKDEA 1029

Query: 2005 EEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEFSAPYTPQQNGVA 2184
             + F ++K E ENQLD+RIK +RSDRGGEY + F +  C +NGIIH+ +APY+PQ NG+A
Sbjct: 1030 IDAFRQYKTEVENQLDKRIKMIRSDRGGEYESPFAQ-ICVENGIIHQTTAPYSPQSNGIA 1088

Query: 2185 ERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTPYELWKGFSPNLK 2364
            ERKNRTLKEMMNA+LISSGL  N+WGEA+L+A  ILN+VPH K    PYE WKG  PNLK
Sbjct: 1089 ERKNRTLKEMMNALLISSGLPQNLWGEAILTANRILNRVPHSKTQSIPYEKWKGRKPNLK 1148

Query: 2365 YLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMC-------LDDNSICES 2523
            Y +VWGCLAKV +P  ++  IGPKT DCVFIGYA    A RF+        +++N++ ES
Sbjct: 1149 YFKVWGCLAKVQVPIPKRVKIGPKTVDCVFIGYAKSSKACRFLVHKSEHSDINENTVIES 1208

Query: 2524 RDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQENEFRRSKRKRVESS 2703
             +AEFFE  +P+K       G                 S N++N+EN  RRS R+R  +S
Sbjct: 1209 DNAEFFENIYPYKTRHEQSSGGSKRPRDEP--------SENVHNEENP-RRSTRQRTSTS 1259

Query: 2704 FGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDASFWKEAIKSELDSIM 2883
            FG DF+T                   FLLE +P+T+KEA++S D+SFWKEA+ SE+DSI+
Sbjct: 1260 FGSDFVT-------------------FLLENEPRTFKEAMSSSDSSFWKEAVNSEIDSIL 1300

Query: 2884 VNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYSQKKGIDFFDTYSPV 3063
             N TW+LVDLP G KP+  KWIFKRKM+ D TI+K+KARLVV G++QK+G+D+FDTYSPV
Sbjct: 1301 SNHTWELVDLPPGNKPLGSKWIFKRKMKTDGTIDKYKARLVVKGFNQKEGLDYFDTYSPV 1360

Query: 3064 TKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEGLAEPNK-NKVCKLKK 3240
            T++ +IR LIALA++Y+L IHQMDVKTAFLNG LEEEIYMEQ EG   P K NKVCKL K
Sbjct: 1361 TRITSIRMLIALAAVYDLQIHQMDVKTAFLNGVLEEEIYMEQPEGFVVPGKENKVCKLVK 1420

Query: 3241 SLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVIICLYVDDMLILGTNI 3420
            SLYGLKQAPKQW+ KFD ++++NGF +N  D CVY K      VI+CLYVDDMLI+  +I
Sbjct: 1421 SLYGLKQAPKQWHAKFDQTMLANGFKINECDKCVYIKDTPNHQVIVCLYVDDMLIISRDI 1480

Query: 3421 SVVNETKTFLSSQFDMKDLGEVDVILGIKVRKTENGYSLCQSHYIEKVLKRFNYFDVDPV 3600
              +N TK  L S+FDMKDLG  DVILGI++ +T  G +L QSHYIEKVL +F Y + D  
Sbjct: 1481 CDINATKRMLESKFDMKDLGVADVILGIRIHRTPQGLALSQSHYIEKVLDKFKYMEFDIA 1540

Query: 3601 KTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVSRLSRYTHNPNNEHW 3780
            KTP D++  L+KN+G   SQ EYA+++G +M++MN TRPDIA  +S+LSRYT NPN  HW
Sbjct: 1541 KTPLDANFALRKNEGESDSQLEYARVLGCLMYIMNCTRPDIACTISKLSRYTSNPNKTHW 1600

Query: 3781 DALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTSGYVFTLGGCAISWK 3960
             A+ R+L YLK T ++ L +NK+P VLEGY DANW++ +++V STSGYVFT+GG A+ WK
Sbjct: 1601 MAMKRVLGYLKYTQDYALHYNKYPAVLEGYSDANWITGSNKVKSTSGYVFTIGGGAVFWK 1660

Query: 3961 SSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPVSIHCDSQAAIGIAK 4140
             SKQTCIARSTME+EFIAL+ AG+EA WL+N L DIP W K + PV IHCDSQAAIG A 
Sbjct: 1661 LSKQTCIARSTMESEFIALDKAGEEAVWLQNFLEDIPYWPKPVAPVCIHCDSQAAIGRAG 1720

Query: 4141 NSIYNGKKRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGLPRKVVLESSRGMGL 4320
            + +YNGK RHIR RH  V++LL +G+I++DYV S++N+ +P TKGL R+ V  +S+GM L
Sbjct: 1721 SMMYNGKSRHIRRRHNTVRELLSSGIITIDYVNSKDNVLNPLTKGLSREGVERTSKGMDL 1780

Query: 4321 KP 4326
            +P
Sbjct: 1781 RP 1782


>gb|KYP64289.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1012

 Score = 1210 bits (3131), Expect = 0.0
 Identities = 603/1026 (58%), Positives = 776/1026 (75%), Gaps = 8/1026 (0%)
 Frame = +1

Query: 1279 NLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGG-QVYMGNDGTARVIGKGKVLLKFT 1455
            N+V + S W++DSGA+RH+C NR  F  +  V DG  QVY+G+  T  V+GKGKVL+K T
Sbjct: 12   NIVTNVSKWVVDSGATRHICANRNAFSSYTAVEDGEEQVYLGDSRTTPVLGKGKVLIKLT 71

Query: 1456 SGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVIDGLFV 1635
            SGKTLALN+VL+VPS+R N+VS +LL + G+KV+ ESDK+++T+NN FVGKGY   GLFV
Sbjct: 72   SGKTLALNDVLHVPSIRVNLVSVALLGKVGVKVSFESDKIVMTKNNVFVGKGYCDQGLFV 131

Query: 1636 LNTDPSTNEN-SASAYIVESVNMWHGRLGHLNIASIKRLKTMNLINVVDSKEFSKCAICV 1812
            LN    T+E+ S+SAY+++S  MWH RLGH+N A + +LK + +IN+ D ++  KC ICV
Sbjct: 132  LNVSEITSESASSSAYMIDSYGMWHARLGHVNSAYVLKLKRLGMINMHD-EQIGKCEICV 190

Query: 1813 EAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRYTKVYLLRS 1992
            E+K  KK+  +V ++ ++ L LIH DLAD K TMS+GGK Y++TF+DD+SRYTKVYL++ 
Sbjct: 191  ESKLIKKTCHSV-FRESEPLSLIHYDLADLKQTMSRGGKNYFVTFIDDFSRYTKVYLIKH 249

Query: 1993 KDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEFSAPYTPQQ 2172
            KDEA +MFL +KAE ENQL++RIKR+RSDRGGEY      D+CEK GIIHE + PY+P+ 
Sbjct: 250  KDEAFDMFLSYKAEVENQLNKRIKRIRSDRGGEYM--LFDDYCEKEGIIHEVTPPYSPES 307

Query: 2173 NGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTPYELWKGFS 2352
            NGVAERKNRTLKEMMNA+L SS   DN+WGEA+L+AC++ N++PH++  KTPYELWKG+ 
Sbjct: 308  NGVAERKNRTLKEMMNALLNSSSAPDNLWGEALLTACFLQNRIPHRRTGKTPYELWKGYV 367

Query: 2353 PNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCL-----DDNSIC 2517
            PNLKYLRVWGCLAKV LPD +K  IGPKT DC+FIGYA   AAYRF+ L     D N+I 
Sbjct: 368  PNLKYLRVWGCLAKVLLPDPKKRKIGPKTSDCMFIGYAERSAAYRFLVLKSSVIDCNTIV 427

Query: 2518 ESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQENEFRRSKRKRVE 2697
            E+++AEFFE  FP K    S I               H           + RRSKR+R E
Sbjct: 428  ETKNAEFFENIFPLK----SSINTSSTQPSPLETSSEH--------MFEDLRRSKRQRKE 475

Query: 2698 SSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDASFWKEAIKSELDS 2877
            +SFG DF T                   +L+E DP ++ EA++S DA FWKEAI+ E+DS
Sbjct: 476  TSFGSDFYT-------------------YLVENDPISFSEAISSSDAIFWKEAIRIEIDS 516

Query: 2878 IMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYSQKKGIDFFDTYS 3057
            I  N+TW LVDLPKG KPI CKWIFKRK  PD +IEK+KARLV  G++QK+ IDFFDT++
Sbjct: 517  IKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIEKYKARLVAKGFTQKQDIDFFDTFA 576

Query: 3058 PVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEGLAEPNK-NKVCKL 3234
            PV ++++IR LIALASI+ LVIHQMDVKTAFLNG+LEEEIYM Q EG   P + NKVC+L
Sbjct: 577  PVARISSIRVLIALASIHRLVIHQMDVKTAFLNGELEEEIYMTQPEGCEVPGQENKVCRL 636

Query: 3235 KKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVIICLYVDDMLILGT 3414
             KSLYGLKQAPKQW+ KFD  L+++GF  +++D CVY+K +  DCVIICLYVDDMLI GT
Sbjct: 637  LKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADKCVYTKSMNDDCVIICLYVDDMLIFGT 696

Query: 3415 NISVVNETKTFLSSQFDMKDLGEVDVILGIKVRKTENGYSLCQSHYIEKVLKRFNYFDVD 3594
               +V +TK+FL+S FDMKD+GE  VILG+KV +  +   L Q HY+E++LK+F+Y+D  
Sbjct: 697  CDDIVFKTKSFLASNFDMKDMGEASVILGVKVVRKGDSILLSQGHYVERLLKKFDYYDCK 756

Query: 3595 PVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVSRLSRYTHNPNNE 3774
             V TPYD +  LK+NKG  ++Q +YA+IIGS++ LMN++RPDIAYAVSRLSRYTH PN +
Sbjct: 757  SVTTPYDVNSQLKQNKGDSLAQSQYAQIIGSLLHLMNFSRPDIAYAVSRLSRYTHCPNQD 816

Query: 3775 HWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTSGYVFTLGGCAIS 3954
            HW+AL RL++YL+GT+++ ++++ FP VLEGY DANW+SD+DE  STSGYVFTLGG AI+
Sbjct: 817  HWEALARLMRYLRGTMDYGIEYSGFPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAIA 876

Query: 3955 WKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPVSIHCDSQAAIGI 4134
            W+S +Q+ IARSTME+EF+ALE+   EAEWL+N LA+IPL  K    VSIHCD+Q+AI I
Sbjct: 877  WRSVRQSIIARSTMESEFVALEMTSTEAEWLRNFLANIPLGMKPTPSVSIHCDNQSAIAI 936

Query: 4135 AKNSIYNGKKRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGLPRKVVLESSRGM 4314
            AKN  YNGK RHI++RH IVKQLLK+G IS++YV+SE NLADP TK L RK++ E+SRGM
Sbjct: 937  AKNKSYNGKNRHIQLRHNIVKQLLKDGTISINYVKSEGNLADPLTKPLGRKMIYETSRGM 996

Query: 4315 GLKPTD 4332
            GLKP +
Sbjct: 997  GLKPIE 1002


>gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1330

 Score = 1181 bits (3055), Expect = 0.0
 Identities = 633/1367 (46%), Positives = 854/1367 (62%), Gaps = 38/1367 (2%)
 Frame = +1

Query: 343  SLNKVFCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIG 522
            S+  +    +KLE  +G +++RW KK+      L++ YVL+   P+ +   N+  I    
Sbjct: 5    SMKDMIIKENKLEKFEGVDFRRWQKKMHFLLSSLKVVYVLTTPIPEIQEEGNLEQI---- 60

Query: 523  SSQNEIDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXX 702
                       K+E DN    GH+LN MS+ LFD++ N ++AK++W+TLE          
Sbjct: 61   -------RKRSKWENDNYICLGHILNGMSDPLFDVYQNVETAKLLWDTLEAKYMAEDSSS 113

Query: 703  XXXVVGNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDY 882
               +V N+  ++MVD++P+MEQ H    ++ +     MKM E +  + +++K P  W D 
Sbjct: 114  KKFLVSNFNNYKMVDERPVMEQYHELLRILGQFAQHDMKMDESISVSSIIDKLPPSWRDV 173

Query: 883  RNQLKHKKRDLSLQELISHMRTEEANRLKDKQISNS----TSSVKANLVESAGTSKNRNK 1050
            ++ LKH+K +L+L EL SH R EE  R ++  + N       S   N+VE+  +SK  +K
Sbjct: 174  KHNLKHQKGELTLVELGSHFRIEEGLRAQENVLVNDEKKRAGSSSVNMVETGESSKGNSK 233

Query: 1051 GKEKYVKDHQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQ 1230
             K K       + F    N    +KP   C+ CGK GH    CK  K  +       K +
Sbjct: 234  FKGK-------RKFQGNNNSGSNKKPNYPCWKCGKVGHFKKDCKLMKKNKKSGS---KDK 283

Query: 1231 ANLXXXXXXXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDG 1410
                            NL +D  AW +DSGA+ H+C + R F +F+ + DG  + MGN  
Sbjct: 284  QEAGSSGSKDPGKQGQNL-DDDIAWWVDSGATSHVCKDLRWFKDFQPIEDGSIIKMGNVA 342

Query: 1411 TARVIGKGKVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRN 1590
            T  + G G V L FTSGKTL LNNVLY P +R+N++SG +L   G K  LESDK I++R+
Sbjct: 343  TEPIKGIGTVNLVFTSGKTLLLNNVLYAPGIRKNLLSGIVLNNCGYKQVLESDKYILSRH 402

Query: 1591 NDFVGKGYVIDGLFVLNTD-------------------PST-NEN---SASAYIVESVNM 1701
              FVG GY+ +G+F+LN D                   PST N N   S S + +    +
Sbjct: 403  GTFVGFGYLCNGMFMLNVDVSFMNESVCVASTSNVNDVPSTSNANCIASTSRHNLTESEL 462

Query: 1702 WHGRLGHLNIASIKRLKTMNLINVVDSKEFSKCAICVEAKHAKKSFKNVAYKSTQLLELI 1881
            WH RLGH++   +K +  M+LI  ++     KC +C   K  KK F    ++ T++L+LI
Sbjct: 463  WHARLGHVHYKRVKEMSKMSLIPPININN-DKCHVCKLNKITKKPFMQHVHRETKVLDLI 521

Query: 1882 HSDLADFKNTMSKGGKKYYITFVDDYSRYTKVYLLRSKDEAEEMFLKFKAEAENQLDRRI 2061
            HSDL DF  T S G KKY +TF+DD +R+  VYLL +KDEA E F  +K E E      I
Sbjct: 522  HSDLCDFHATPSLGNKKYVVTFIDDSTRFCYVYLLHAKDEALEKFKIYKQEVELHRSGLI 581

Query: 2062 KRLRSDRGGEYSTNFLKDFCEKNGIIHEFSAPYTPQQNGVAERKNRTLKEMMNAMLISSG 2241
            K L +DRGGEY   F   + +  GIIH  +APYTP+QNGVAERKNRTLKEM+N ML  SG
Sbjct: 582  KTLHTDRGGEY---FDPVYFQSTGIIHHTTAPYTPEQNGVAERKNRTLKEMVNTMLSYSG 638

Query: 2242 LSDNMWGEAVLSACYILNKVPHKKLDKTPYELWKGFSPNLKYLRVWGCLAKVALPDFRKP 2421
            LS+  WGEA+L+ACY+LN+VP+K+   TP+ELW    P L  LRVWGC A V L D +  
Sbjct: 639  LSEGFWGEAMLTACYLLNRVPNKRNKTTPHELWYRKPPELHKLRVWGCRAVVRLTDPKIR 698

Query: 2422 NIGPKTFDCVFIGYAIDGAAYRFMCLDDN------SICESRDAEFFETNFPFKKNDISDI 2583
            NIG +  DC+FIGYA    A+RF  ++ N      ++ E+R+AE+ E  F         +
Sbjct: 699  NIGERGIDCIFIGYAEHSFAHRFYVIEPNDYVSVHTVIEARNAEYDENRFSSMPRPRDMV 758

Query: 2584 GXXXXXXXXXXXXCVHGCSSNLNNQENEFRRSKRKRVESSFGPDFITAFLVENDNLDKVN 2763
                              +  + +   E RRS R R   SFG DF   +LVE    D++ 
Sbjct: 759  PSSSNSHV----------ADQVIDTPPELRRSGRARKAKSFGDDF-QLYLVEGSR-DEIK 806

Query: 2764 DNIVSVFLLEEDPKTYKEALTSIDASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCK 2943
                  F +EEDPKTY EA+ S D +FWKEAI  E+DSIM N+TW L DLP GCKP+ CK
Sbjct: 807  IQYQYCFNIEEDPKTYSEAMASRDVAFWKEAINDEMDSIMQNNTWKLSDLPPGCKPLGCK 866

Query: 2944 WIFKRKMRPDNTIEKFKARLVVVGYSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVI 3123
            WIFK+KM+ D +IEKFKARLV+ G+ QK+GID+FDTY+PV +++TIR L+ALA+I+ LVI
Sbjct: 867  WIFKKKMKVDGSIEKFKARLVIQGFRQKEGIDYFDTYAPVARISTIRLLVALAAIHNLVI 926

Query: 3124 HQMDVKTAFLNGDLEEEIYMEQHEGLAEP-NKNKVCKLKKSLYGLKQAPKQWYMKFDHSL 3300
            HQMDVKTAFLNGDL+EEIYM+Q EG   P N++KVCKL KSLYGLKQAPKQW+ KFD  +
Sbjct: 927  HQMDVKTAFLNGDLDEEIYMKQPEGFVMPGNEHKVCKLVKSLYGLKQAPKQWHQKFDEVV 986

Query: 3301 ISNGFVVNASDTCVYSKVIGFDC----VIICLYVDDMLILGTNISVVNETKTFLSSQFDM 3468
            +SNGFV+N +D CVYSK   FD     VIICLYVDDMLI GT+   V++TK FLSS FDM
Sbjct: 987  LSNGFVLNQADKCVYSK---FDDSRKGVIICLYVDDMLIFGTDQDQVDKTKKFLSSCFDM 1043

Query: 3469 KDLGEVDVILGIKVRKTENGYSLCQSHYIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGI 3648
            KDLGE +VILGI++++  NG S+ QSHYIEK+LK+FN+ D  PV TP D +  L  N+G+
Sbjct: 1044 KDLGEAEVILGIRIKRENNGISISQSHYIEKILKKFNFHDSSPVSTPMDPAFKLSPNEGV 1103

Query: 3649 GISQPEYAKIIGSVMFLMNYTRPDIAYAVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNW 3828
             +SQ EY++ IGS+M+ M  TRPDIAYAV +LSRYT NP   HW A+ R+ +YLKGT+ +
Sbjct: 1104 AVSQLEYSRAIGSLMYAMISTRPDIAYAVGKLSRYTSNPGASHWQAMNRVFRYLKGTMKY 1163

Query: 3829 CLQFNKFPGVLEGYCDANWVSDNDEVSSTSGYVFTLGGCAISWKSSKQTCIARSTMEAEF 4008
             L +  FP VLEGY DA+W+ + ++ SSTSG+ F LGG AISW S KQTCI  STME+EF
Sbjct: 1164 GLTYTGFPSVLEGYSDASWIKNKEDHSSTSGWTFLLGGGAISWASKKQTCITDSTMESEF 1223

Query: 4009 IALELAGQEAEWLKNLLADIPLWKKQLVPVSIHCDSQAAIGIAKNSIYNGKKRHIRIRHG 4188
            +AL  AG+EAEWL+NL+ +IPLW K + P+SI CDS A +  A + +YNGK RH+ +RH 
Sbjct: 1224 VALAAAGKEAEWLRNLIYEIPLWPKPISPISIRCDSAATLAKAYSQVYNGKSRHLGVRHS 1283

Query: 4189 IVKQLLKNGVISLDYVRSENNLADPFTKGLPRKVVLESSRGMGLKPT 4329
            ++++L+  GVIS+++VR++ NLAD  TK L R +V +++ GMGLK T
Sbjct: 1284 MIRELITQGVISVEFVRTQQNLADHLTKELCRDLVHKAAVGMGLKST 1330


>emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]
          Length = 1473

 Score = 1165 bits (3013), Expect = 0.0
 Identities = 608/1320 (46%), Positives = 839/1320 (63%), Gaps = 13/1320 (0%)
 Frame = +1

Query: 364  DLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDA-PQNETTANISVITLIGSSQNEI 540
            DL +L+  DG+N+ RW  K+      L+I Y+L     P  E   N            ++
Sbjct: 12   DLVRLDRFDGSNFXRWQDKVRFLLTALKIFYILDPTLXPLPEPKEN---------DTPQV 62

Query: 541  DEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVG 720
                +K E+D    RGH+LN +S+ L+DL+ N  SA+ IWE LE             ++ 
Sbjct: 63   VAARKKREEDELICRGHILNALSDRLYDLYTNTXSAREIWEALENKYKAEEEGTKKFLIS 122

Query: 721  NWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKH 900
             ++ F+  D+KP++ Q+H  + +V ++    +++ E  Q   ++ K PS W  YR ++ H
Sbjct: 123  QYIDFKFFDEKPLLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILH 182

Query: 901  KKRDLSLQELISHMRTEEANRLKDKQISNSTSSV-KANLVESAGTSKNRNKGKEKYVKDH 1077
            K  D SL+E+  H+R EE +R +DK +  S     KAN +  A    N  +GK    K +
Sbjct: 183  KSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKANAISKA----NHPRGKNNNNKKN 238

Query: 1078 QRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXX 1257
                 +P++N  + +  K  C+VCGK GH A +C+ RKDQ+      I  +         
Sbjct: 239  SGNYMSPKKNQEQFKGKKGPCFVCGKPGHYARECRFRKDQKGAVVNAIDEEI-------- 290

Query: 1258 XXXXXXTNLVEDK-SAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                    +V+ K   W  D+ A+ H+  ++ LF  FE+     +V MGN+G ++V+GKG
Sbjct: 291  IATLSDVCVVQGKVQGWWYDTCATVHVTYDKSLFKTFEDAKGDQEVQMGNEGKSKVLGKG 350

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             + + FTSGK + L NVLYVP + +N+VSG LL + G+K   ES K+I+T++ +FVGKGY
Sbjct: 351  TIEVVFTSGKKVTLKNVLYVPDMNKNLVSGDLLGKPGIKAVFESGKLILTKSGNFVGKGY 410

Query: 1615 VIDGLFVLNTDPSTNE-NSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSK 1785
              DG+  L+T+ + N+  S SAY+ +S  + +WH RL H+ +++IKR+    LI   D+K
Sbjct: 411  SCDGMIKLSTNDNINKMTSTSAYMCDSNSLXLWHNRLAHVGLSTIKRIVKCGLI-ACDTK 469

Query: 1786 EFSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSR 1965
            +F KC ICV++K  KK F +V  +S+ LL+L HSDL +    +++GG +Y++TF+DD SR
Sbjct: 470  KFEKCEICVKSKMIKKPFHSVE-RSSNLLDLXHSDLCELNGMLTRGGNRYFLTFIDDCSR 528

Query: 1966 YTKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHE 2145
            +T V+LL++K E    F  +KAE ENQL + IK LRSDRG EY ++    FCE+ GIIHE
Sbjct: 529  FTYVFLLKNKSETFNAFKVYKAEVENQLXKNIKVLRSDRGXEYFSSEFNSFCEEYGIIHE 588

Query: 2146 FSAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKT 2325
             +APYTPQ NG+AERKNRT  EM+N ML+ + L+ N+WGEA+L+AC+ILN++P KK + +
Sbjct: 589  CTAPYTPQHNGIAERKNRTFLEMVNXMLLHAKLNFNLWGEALLTACHILNRIPMKKKEIS 648

Query: 2326 PYELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD 2505
            PYELWKG  PN+ Y +VWGCLA     D  K  +GP+   C F+G A +  AYR + L+ 
Sbjct: 649  PYELWKGRKPNIGYFKVWGCLAYCKKTDPNKTKLGPRAIKCAFVGCASNSNAYRLLDLES 708

Query: 2506 NSICESRDAEFFETNFPFKKNDI-SDIGXXXXXXXXXXXXCVHGCSSNLNNQENEFRRSK 2682
            N I ESR+ EFFE       + + + +G                  S +  Q    R+S+
Sbjct: 709  NVIIESREVEFFENLLSDSNSQVPTSVGESQEETP-----------SKVVEQPIVPRKSQ 757

Query: 2683 RKRVESSFGPDFITA-----FLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDASFW 2847
            R R E   G D I +     +LVE +  D +   I  V  +EEDPKTYKEA+ S D +FW
Sbjct: 758  RARKEKVLGSDEIDSQRISFYLVEGNREDIIR-KIPIVLQIEEDPKTYKEAMASRDVAFW 816

Query: 2848 KEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYSQK 3027
            KEAI  E+DSIM N TW+LVDLP G KPI CKW+F+RK   D  I+ FKARLV  G+ Q+
Sbjct: 817  KEAINDEMDSIMSNQTWELVDLPPGSKPIGCKWVFRRKYHTDGMIQTFKARLVAKGFKQR 876

Query: 3028 KGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEGLAE 3207
            +GID+FDTY+PV +  +IR L ALASI+ L +HQMDVKTAFLNGDL EE+YMEQ EG   
Sbjct: 877  EGIDYFDTYAPVARTTSIRILFALASIHNLFVHQMDVKTAFLNGDLNEEVYMEQPEGFVL 936

Query: 3208 -PNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVIICL 3384
              N+NKVCKL KSLYGLKQAPKQW+ KFDH+++S+GF  N  D C+YSK      VI+CL
Sbjct: 937  LGNENKVCKLVKSLYGLKQAPKQWHEKFDHAILSDGFRHNNVDKCLYSKTCDDYMVIVCL 996

Query: 3385 YVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKVRKTENGYSLCQSHYIEKV 3564
            YVDDMLIL  ++  + ETK FLS  F MKDL EVD ILGIKV++   GY+L Q+HYIEKV
Sbjct: 997  YVDDMLILSDDMXGIIETKRFLSXTFKMKDLXEVDTILGIKVKRNSGGYALNQTHYIEKV 1056

Query: 3565 LKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVSRL 3744
            + +F++  +    TP+DSS  L+KN G  ++Q EYA  IGS+M+    TR DI++AVS+L
Sbjct: 1057 VSKFSHLKIKDANTPFDSSIKLEKNBGRSVAQLEYASAIGSLMYAAQCTRADISFAVSKL 1116

Query: 3745 SRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTSGY 3924
            SR+T NP+ EHW A+ R+L YLK T    LQ++KFP ++EGY DA+W+S   +  ST+G+
Sbjct: 1117 SRFTSNPSVEHWKAIGRVLGYLKNTKELSLQYSKFPAIIEGYSDASWISSVGDNLSTTGW 1176

Query: 3925 VFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPVSI 4104
            VFTLGG A+SW S KQTCI+ STMEAEFIAL   G+EAEWL++L+ DIP     +  VSI
Sbjct: 1177 VFTLGGGAVSWGSKKQTCISHSTMEAEFIALAATGKEAEWLRDLMMDIPFTANNVSTVSI 1236

Query: 4105 HCDSQAAIGIAKNSIYNGKKRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGLPR 4284
            HCDSQA +  A + +YNGK RHI IRH  V+QL++NG+IS+ +VRS  NLADPFTK L R
Sbjct: 1237 HCDSQATLARAYSGVYNGKSRHISIRHEYVRQLIQNGIISISFVRSSGNLADPFTKPLTR 1296


>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score = 1130 bits (2922), Expect = 0.0
 Identities = 605/1340 (45%), Positives = 848/1340 (63%), Gaps = 19/1340 (1%)
 Frame = +1

Query: 364  DLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNEID 543
            D+ K E  DG ++KRW  K  ++   L++ +V++   PQ  +  +         ++    
Sbjct: 23   DVIKPEAFDGASFKRWQIKTRMWLTDLKLFWVVTSAVPQAASDDSDDAAKAAALAEKA-- 80

Query: 544  EGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGN 723
                K+++ N      LLN +SN LFD++    SAK +W  LE                N
Sbjct: 81   ----KWDEANEACLSRLLNVLSNRLFDVYSAFTSAKGLWTDLENEFSEVDNGNESFTTEN 136

Query: 724  WLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHK 903
            +L ++MV+ + +MEQ+   + LV +++  G  + +  Q N +L K P  W D+    +H 
Sbjct: 137  YLNYKMVEGRSVMEQLQEIQLLVRDLVQYGCVLPDSFQVNAILAKLPPSWRDFVTSRRHM 196

Query: 904  KRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKYVKDHQR 1083
            K+ ++L EL + +  EE  R  +K     +  ++A++VE  G  K + K K        +
Sbjct: 197  KKQMTLTELSAAINVEERARSSNKP----SQQLQAHVVEKGGDRKFQKKKKNS-----PQ 247

Query: 1084 KNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXXXX 1263
            KN    ++    +K    CYVCG  GH A +CK RK +    QR    + N+        
Sbjct: 248  KNLNQPKSKKMKKKEDFICYVCGVSGHTARRCKLRKGKGPPPQR---KEGNVVVNSTPGY 304

Query: 1264 XXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGKVL 1443
                  +      W MDSGA+ H+C +R +F  F+   +   V MGN   A V G G+V 
Sbjct: 305  ALQAF-MASPSDDWWMDSGATVHICADRSMFSSFQGF-NSAPVLMGNGVPAAVRGTGQVY 362

Query: 1444 LKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVID 1623
            LK TSGKTL L +VLYVPS+ RN++S SLL R GLK+  ES+KV++++   FVGK Y   
Sbjct: 363  LKLTSGKTLVLKDVLYVPSMSRNLISVSLLCRQGLKLVFESNKVVLSKFGTFVGKSYESG 422

Query: 1624 GLFVLNTDPSTNENSASAYIVESV-------NMWHGRLGHLNIASIKRLKTMNLINVVDS 1782
            GLF L+       N+ S+Y V  V       N+WH RL H+N  +IKRL  M+LI     
Sbjct: 423  GLFRLSV-----LNNHSSYHVNVVCNNDSINNIWHSRLCHVNFEAIKRLSDMSLIPEYKH 477

Query: 1783 KEFSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYS 1962
             +  KC ICV+AK  +K F  V  +ST  LELIHSD+ +    + KGGK+Y++T +DD +
Sbjct: 478  VKGVKCGICVQAKQPRKPFHTVEGRSTTPLELIHSDICEMNGIIIKGGKRYFLTLIDDAT 537

Query: 1963 RYTKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIH 2142
            R+  +YLLR+KDEA E F  +K E ENQLD++IKRLRSDRGGEY +N   ++C++ GIIH
Sbjct: 538  RFCYIYLLRTKDEALEHFKIYKTEVENQLDKKIKRLRSDRGGEYLSNLFDEYCKECGIIH 597

Query: 2143 EFSAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDK 2322
            E +APY+PQ NGVAERKNRT+ ++ NA+L SSG+ D  WGEAVL+ CY+LN+VP +  + 
Sbjct: 598  ETTAPYSPQSNGVAERKNRTVCDLANALLQSSGMPDIWWGEAVLTVCYVLNRVPPRNREA 657

Query: 2323 TPYELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLD 2502
            TPYE +KG  P+L +LR WGCLAKV +P  +K  +GPKT DCVF+GYA + AAYRF+ + 
Sbjct: 658  TPYEGFKGRKPDLSHLRTWGCLAKVNVPLPKKRKLGPKTVDCVFLGYAHNSAAYRFLVVH 717

Query: 2503 D-------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQ- 2658
                    N I ESRD  FFE+ FP +  ++                  +   S++N+Q 
Sbjct: 718  SETSEIAVNVIMESRDVTFFESIFPMRDKEV---------VAPDGPSRTYSLPSSVNDQT 768

Query: 2659 -ENEFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
             + E RRSKR+R E S G D+I                   ++L++E+P++  EA TS D
Sbjct: 769  PDLELRRSKRQRTEKSLGDDYI-------------------IYLVDEEPRSLTEAYTSPD 809

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +W+EA+ SE+DSI+ N TW++ DLP GCKP+ CKWIF+RK RPD TIEK+KARLV  G
Sbjct: 810  AEYWREAVLSEMDSIISNGTWEITDLPAGCKPVGCKWIFRRKRRPDGTIEKYKARLVAKG 869

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            ++QKK  D+FDTYSPV ++ TIR L+ALA+ Y+L++HQMDVKTAFLNG+LEEEIYM+Q E
Sbjct: 870  FTQKKEEDYFDTYSPVARLPTIRVLLALAAAYKLLVHQMDVKTAFLNGELEEEIYMQQPE 929

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + +  ++KVC+L KSLYGLKQAP+QW+ KF+++L + GF VN +D CVY +  G   V
Sbjct: 930  GFVVKGQESKVCRLIKSLYGLKQAPRQWHEKFNNTLTTAGFCVNEADKCVYYRFSGGKGV 989

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKVRKTENGYSLCQSHY 3552
            I+CLYVDD+LI GT++  + ETK FLS  FDMKDLGE DVIL IK+ K E+G +L QSHY
Sbjct: 990  IMCLYVDDILIFGTDLEAIMETKLFLSKNFDMKDLGEADVILNIKLIKGEDGITLSQSHY 1049

Query: 3553 IEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYA 3732
            +EKV+ RF + D  PV TPYD S  L K +G  ++Q  Y++IIGS+M+L + TRPDI+YA
Sbjct: 1050 VEKVMTRFGHMDCKPVTTPYDPSYTLSKYEGEPVNQLLYSQIIGSLMYLSSATRPDISYA 1109

Query: 3733 VSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSS 3912
            V RL+RY+ +P + HW ALYR+L+YLKG +N  +++  FP VLEG+ DANW+SD+D++ S
Sbjct: 1110 VCRLARYSASPGDRHWVALYRVLRYLKGAMNLGIKYTGFPSVLEGFSDANWISDSDQMKS 1169

Query: 3913 TSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLV 4092
            TSGYVFTL G A+SW+SSKQ+   RST EAE +AL+ A  EAEWL++LL+D+P+  K + 
Sbjct: 1170 TSGYVFTLAGGAVSWRSSKQSVSTRSTKEAELVALDSAALEAEWLRDLLSDLPMLAKPIP 1229

Query: 4093 PVSIHCDSQAAIGIAKNSIYNGKK--RHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
             V ++CD+ + + +  NS  + +K  RHIR R    +   + GVI++DY++SE NLADPF
Sbjct: 1230 AVLVYCDNTSVL-LKVNSRKDNQKSSRHIRRRLDSCRHARETGVITVDYIKSERNLADPF 1288

Query: 4267 TKGLPRKVVLESSRGMGLKP 4326
            TKGL +K +  +  GMGL P
Sbjct: 1289 TKGLAQKPIQAACMGMGLVP 1308


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score = 1126 bits (2913), Expect = 0.0
 Identities = 603/1341 (44%), Positives = 835/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 118  FAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 163

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+
Sbjct: 164  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGISDAGSELYVM 221

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 222  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLK 281

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 282  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 341

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 342  KAATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 397

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 398  LPRVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVG 452

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 453  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGY 512

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++   +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 513  DSGGLFRFSLNDMCNNHNVVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 572

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGE VL+AC++LNK+P K  + TP
Sbjct: 693  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVLTACHVLNKIPMKHKEVTP 752

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 753  FEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 812

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 813  VPDMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFTPIEHNDQTPEENPEED 871

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 872  NIVDTRKSKRQRVVKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 912

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 913  ADYWKEAVRSEMDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKG 972

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 973  YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1032

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1033 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1092

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1093 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1152

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1153 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1212

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1213 AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1272

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1273 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVEKPV 1332

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1333 PAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1392

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1393 TKGLPRNVIDSASREMGLIPT 1413


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score = 1126 bits (2913), Expect = 0.0
 Identities = 603/1341 (44%), Positives = 835/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 99   FAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 144

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+
Sbjct: 145  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGISDAGSELYVM 202

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 203  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLK 262

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 263  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 322

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 323  KAATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 378

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 379  LPRVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVG 433

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 434  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGY 493

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++   +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 494  DSGGLFRFSLNDMCNNHNVVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 553

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 554  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 613

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 614  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 673

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGE VL+AC++LNK+P K  + TP
Sbjct: 674  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVLTACHVLNKIPMKHKEVTP 733

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 734  FEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 793

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 794  VPDMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFTPIEHNDQTPEENPEED 852

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 853  NIVDTRKSKRQRVVKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 893

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 894  ADYWKEAVRSEMDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKG 953

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 954  YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1013

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1014 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1073

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1074 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1133

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1134 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1193

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1194 AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1253

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1254 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVEKPV 1313

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1314 PAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1373

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1374 TKGLPRNVIDSASREMGLIPT 1394


>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1448

 Score = 1124 bits (2906), Expect = 0.0
 Identities = 602/1341 (44%), Positives = 838/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 153  FAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 198

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+
Sbjct: 199  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVM 256

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVD++ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 257  EQFYDYKMVDNRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 316

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 317  HKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGCSSANMVQKKNPHASHNNKKVKPDVKP 376

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 377  KAATNFKKKGKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMVISEGGGTSGYGKI 432

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 433  LPTVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVG 487

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 488  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGY 547

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 548  DSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 607

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 608  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 667

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 668  CYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 727

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 728  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTP 787

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 788  FEEWERKKLNLSYLRTWGCLAKVNVPIAKKWKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 847

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 848  VPDMHAGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEED 906

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S+D
Sbjct: 907  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSLD 947

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 948  ADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKG 1007

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 1008 YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1067

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1068 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1127

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYV+D+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R+ E+G +L QSH
Sbjct: 1128 ILCLYVNDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQREDEDGITLVQSH 1187

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1188 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNQRIARDQLRYSQIIGSLMYLASATRPDISF 1247

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1248 AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1307

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1308 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPV 1367

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  R I+ R   V++   +GVI+LDYV+   NLAD F
Sbjct: 1368 PAILMNCDNQTMIIKVNSSKDNMKSSRQIKRRLKSVRKQKNSGVIALDYVQKARNLADQF 1427

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1428 TKGLPRNVIDSASREMGLIPT 1448


>emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa]
          Length = 1413

 Score = 1122 bits (2901), Expect = 0.0
 Identities = 601/1341 (44%), Positives = 836/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 118  FAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 163

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+
Sbjct: 164  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVM 221

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 222  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 281

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 282  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 341

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 342  KAATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 397

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 398  LPTVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGFSLLMGNGSLAAVHGVG 452

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 453  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGY 512

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 513  DSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 572

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 573  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 632

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 633  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 692

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NG+AERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 693  TPPYSPQSNGMAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTP 752

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 753  FEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 812

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 813  VPNMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEED 871

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 872  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 912

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 913  ADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKG 972

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 973  YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1032

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1033 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1092

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1093 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1152

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  T YD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1153 YVDKVLSRFGYSDCKPAPTSYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1212

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R++++LKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1213 AVSKLSRFVSNPGDDHWQALERVMRHLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1272

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  +L+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1273 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTSLDTATVEAEWLRELLMDLPVVEKPV 1332

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1333 PAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1392

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1393 TKGLPRNVIDSASREMGLIPT 1413


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score = 1117 bits (2888), Expect = 0.0
 Identities = 604/1341 (45%), Positives = 833/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 113  FAAALKPHAFDGSNYKRWKTRALLWLTAMQCFYVSRGKRSEPPLSP-------------- 158

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K + + LE             V+
Sbjct: 159  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVM 216

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 217  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 276

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 277  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 336

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 337  KAATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 392

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 393  LPTVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVG 447

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R   ++  ES+K ++++   FVGKGY
Sbjct: 448  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYGTFVGKGY 507

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 508  DSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 567

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LELIHSDL +    ++KGGKKY++T +DD +R+
Sbjct: 568  GSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 627

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 628  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 687

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 688  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTP 747

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 748  FEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 807

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 808  VPDMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEED 866

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 867  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 907

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA+ SE+DSIM N TW++V+ P GCKPI CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 908  ADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKG 967

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 968  YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1027

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1028 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1087

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1088 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1147

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1148 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1207

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1208 AVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1267

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1268 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPV 1327

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1328 PAILMNCDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1387

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLP  V+  +SR MGL PT
Sbjct: 1388 TKGLPCNVIDSASREMGLIPT 1408


>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1479

 Score = 1117 bits (2888), Expect = 0.0
 Identities = 604/1341 (45%), Positives = 833/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 184  FAAALKPHAFDGSNYKRWKTRALLWLTAMQCFYVSRGKRSEPPLSP-------------- 229

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K + + LE             V+
Sbjct: 230  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVM 287

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 288  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 347

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 348  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 407

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 408  KAATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 463

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 464  LPTVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVG 518

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R   ++  ES+K ++++   FVGKGY
Sbjct: 519  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYGTFVGKGY 578

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 579  DSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 638

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LELIHSDL +    ++KGGKKY++T +DD +R+
Sbjct: 639  GSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 698

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 699  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 758

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 759  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTP 818

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 819  FEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 878

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 879  VPDMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEED 937

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 938  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 978

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA+ SE+DSIM N TW++V+ P GCKPI CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 979  ADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKG 1038

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 1039 YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1098

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1099 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1158

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1159 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1218

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1219 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1278

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1279 AVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1338

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1339 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPV 1398

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1399 PAILMNCDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1458

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLP  V+  +SR MGL PT
Sbjct: 1459 TKGLPCNVIDSASREMGLIPT 1479


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score = 1117 bits (2888), Expect = 0.0
 Identities = 592/1279 (46%), Positives = 815/1279 (63%), Gaps = 17/1279 (1%)
 Frame = +1

Query: 544  EGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGN 723
            E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+  
Sbjct: 19   EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQ 78

Query: 724  WLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHK 903
            +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LKHK
Sbjct: 79   FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHK 138

Query: 904  KRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKDHQ 1080
            +++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK   
Sbjct: 139  RQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 198

Query: 1081 RKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXXX 1260
              NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +            
Sbjct: 199  ATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKILP 254

Query: 1261 XXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGKV 1440
                    V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G V
Sbjct: 255  TVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVGTV 309

Query: 1441 LLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVI 1620
             LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY  
Sbjct: 310  DLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDS 369

Query: 1621 DGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKEFS 1794
             GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      + S
Sbjct: 370  GGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKDS 429

Query: 1795 KCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRYTK 1974
            KC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY+ T +DD +R+  
Sbjct: 430  KCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFTTLIDDCTRFCY 489

Query: 1975 VYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEFSA 2154
            VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE + 
Sbjct: 490  VYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTP 549

Query: 2155 PYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTPYE 2334
            PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP+E
Sbjct: 550  PYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFE 609

Query: 2335 LWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD--- 2505
             W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++    
Sbjct: 610  EWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVP 669

Query: 2506 ----NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN--- 2664
                 +I ESRDA FFE  FP K    S                 H   +   N E    
Sbjct: 670  DMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEEDNI 728

Query: 2665 -EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDAS 2841
             + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S DA 
Sbjct: 729  VDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPDAD 769

Query: 2842 FWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYS 3021
            +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  GY+
Sbjct: 770  YWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYT 829

Query: 3022 QKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEG- 3198
            QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +G 
Sbjct: 830  QKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGY 889

Query: 3199 LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVII 3378
            + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + VI+
Sbjct: 890  VLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVIL 949

Query: 3379 CLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSHYI 3555
            CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSHY+
Sbjct: 950  CLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYV 1009

Query: 3556 EKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAV 3735
            +KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++AV
Sbjct: 1010 DKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAV 1069

Query: 3736 SRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSST 3915
            S+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ +T
Sbjct: 1070 SKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKAT 1129

Query: 3916 SGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVP 4095
            SGYVFTLGG A+SWKS KQT + RSTME E  AL+ A  EAEWL+ LL D+P+ +K +  
Sbjct: 1130 SGYVFTLGGGAVSWKSCKQTILTRSTMETELTALDTATVEAEWLRELLMDLPVVEKPVPA 1189

Query: 4096 VSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTK 4272
            + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD FTK
Sbjct: 1190 ILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVITLDYVQTARNLADQFTK 1249

Query: 4273 GLPRKVVLESSRGMGLKPT 4329
            GLPR V+  +SR MGL PT
Sbjct: 1250 GLPRNVIDSASREMGLIPT 1268


>gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
 gb|ABF96711.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1456

 Score = 1116 bits (2886), Expect = 0.0
 Identities = 608/1383 (43%), Positives = 848/1383 (61%), Gaps = 18/1383 (1%)
 Frame = +1

Query: 235  FYLVFVLFDCSYMCLDTGV*PTILKANLYHFFKMAVSLNKV-FCDLSKLEPLDGTNYKRW 411
            + ++ V F    +C  T + PT+ K +         S + V F    K    DG+NYKRW
Sbjct: 127  YAMIIVSFSWIKICRLTTIFPTLQKPDR--------SFSVVGFAAALKPHAFDGSNYKRW 178

Query: 412  SKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNEIDEGTRKFEKDNRTARGH 591
              + L++   ++  YV      +   +                 E   KFE  +   RG 
Sbjct: 179  KARALLWLTAMQCFYVSRGKRSEPPLSP----------------EEEAKFEASDCLFRGA 222

Query: 592  LLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGNWLRFQMVDDKPIMEQV 771
            L++ +++++ D++++  S K +W++LE             V+  +  ++MVDD+ ++EQ 
Sbjct: 223  LISVLADNIVDVYMHMPSGKDMWDSLEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQA 282

Query: 772  HVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHKKRDLSLQELISHMRTE 951
            H  + L  E+ N   ++ +   A  ++ K P  W+D+   LKHK+++ S+ +LI  +  E
Sbjct: 283  HEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVE 342

Query: 952  EANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKDHQRKNFTPRQNDHKIQKP 1128
            E  R KD +         AN+V+      + N  K K  VK     NF  +       K 
Sbjct: 343  EKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKG----KA 398

Query: 1129 KVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXXXXXXXXTNLVEDKSAWI 1308
            K  C+VCGK GH A  C +RKD+++ N  + +                    V     W 
Sbjct: 399  KGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKILPTVLS----VFHSPDWW 454

Query: 1309 MDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGKVLLKFTSGKTLALNNVL 1488
            +D+GA+ H+C +  LF  ++ V  G  + M N   A V G G V LKFTSGKT+ L NV 
Sbjct: 455  VDTGANIHVCADISLFSSYQ-VGRGSSLLMVNGSLAAVHGVGTVDLKFTSGKTVQLKNVQ 513

Query: 1489 YVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVIDGLFVLNTDPSTNENS 1668
            +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY   GLF  + +   N ++
Sbjct: 514  HVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHN 573

Query: 1669 ASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKEFSKCAICVEAKHAKKSFK 1842
            A  +I E+   N+WH RL H+N   + RL  M+LI      + SKC  CV++K  +K  K
Sbjct: 574  AVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHK 633

Query: 1843 NVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRYTKVYLLRSKDEAEEMFLK 2022
                ++   LEL+HSDL +    ++ GGKKY++T +DD +R+  VYLL++KDEA   F  
Sbjct: 634  ASEARNLAPLELVHSDLCEMNGVLTNGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKI 693

Query: 2023 FKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEFSAPYTPQQNGVAERKNRT 2202
            +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE + PY+PQ NGVAERKNRT
Sbjct: 694  YKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRT 753

Query: 2203 LKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTPYELWKGFSPNLKYLRVWG 2382
            L EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP+E W+    NL YLR WG
Sbjct: 754  LTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWG 813

Query: 2383 CLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD-------NSICESRDAEFF 2541
            CLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++         +I ESRDA FF
Sbjct: 814  CLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFF 873

Query: 2542 ETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN----EFRRSKRKRVESSFG 2709
            E  FP K    S                 H       N E     + R+SKR+RV  SFG
Sbjct: 874  ENEFPMKYTP-STSSKETVMPHEHFAPIEHDDQMPEENPEEDNIVDTRKSKRQRVAKSFG 932

Query: 2710 PDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDASFWKEAIKSELDSIMVN 2889
             D+I                   V+L+++ P+T +EA +S DA +WKEA++SE+DSIM N
Sbjct: 933  DDYI-------------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSN 973

Query: 2890 DTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYSQKKGIDFFDTYSPVTK 3069
             TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  GY+QK+G DFFDTYSPV +
Sbjct: 974  GTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 1033

Query: 3070 VATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEG-LAEPNKNKVCKLKKSL 3246
            + TIR L+ALA+ + L++HQMDVK AFLNG+LEEEIYM+Q +G + E  +  VCKL KSL
Sbjct: 1034 LTTIRVLLALAASHGLLVHQMDVKIAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSL 1093

Query: 3247 YGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVIICLYVDDMLILGTNISV 3426
            YGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + VI+CLYVDD+LI GT+++V
Sbjct: 1094 YGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNV 1153

Query: 3427 VNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSHYIEKVLKRFNYFDVDPVK 3603
            + E K +LS  F+MKDLGE DVIL I + R  E G +L QSHY++KVL RF Y D  P  
Sbjct: 1154 IEEVKDYLSKSFEMKDLGEADVILNINLQRGDEGGITLVQSHYVDKVLSRFGYSDCKPAP 1213

Query: 3604 TPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVSRLSRYTHNPNNEHWD 3783
            TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++AVS+LSR+  NP ++ W 
Sbjct: 1214 TPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDQWQ 1273

Query: 3784 ALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTSGYVFTLGGCAISWKS 3963
            AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ +TSGY FTLGG A+SWKS
Sbjct: 1274 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKS 1333

Query: 3964 SKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPVSIHCDSQAAIGIAKN 4143
             KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +  + ++CD+Q  I    +
Sbjct: 1334 CKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNS 1393

Query: 4144 SIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGLPRKVVLESSRGMGL 4320
            S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD FTKGLPR V+  +SR MGL
Sbjct: 1394 SKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASREMGL 1453

Query: 4321 KPT 4329
             PT
Sbjct: 1454 IPT 1456


>gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1457

 Score = 1115 bits (2885), Expect = 0.0
 Identities = 608/1383 (43%), Positives = 850/1383 (61%), Gaps = 18/1383 (1%)
 Frame = +1

Query: 235  FYLVFVLFDCSYMCLDTGV*PTILKANLYHFFKMAVSLNKV-FCDLSKLEPLDGTNYKRW 411
            + ++ V F    +C    + PTI K +         S + V F    K    DG+NYKRW
Sbjct: 128  YAMIIVSFSWIKICRLMTIFPTIQKPDR--------SFSVVGFAAALKPHAFDGSNYKRW 179

Query: 412  SKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNEIDEGTRKFEKDNRTARGH 591
              + L++   ++  YV      +   +                 +   KFE  +   RG 
Sbjct: 180  KARALLWLTAMQCFYVSRGKRSEPPLS----------------PDEEAKFEASDCLFRGA 223

Query: 592  LLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGNWLRFQMVDDKPIMEQV 771
            L++ +++++ D++++  S K +W+ LE             V+  +  ++MVDD+ ++EQ 
Sbjct: 224  LISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQA 283

Query: 772  HVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHKKRDLSLQELISHMRTE 951
            +  + L  E+ N   ++ +   A  ++ K P  W+D    LKHK+++ S+ +LI  +  E
Sbjct: 284  YEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDLATSLKHKRQEFSVPDLIGSLGVE 343

Query: 952  EANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEK-YVKDHQRKNFTPRQNDHKIQKP 1128
            E  R K  +         AN+V+      + N  K K  VK     NF  +       K 
Sbjct: 344  EKARAKYVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKG----KA 399

Query: 1129 KVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXXXXXXXXTNLVEDKSAWI 1308
            K  C+VCGK GH A  C +RKD+++ N  + +                    V     W 
Sbjct: 400  KGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKILPTVLS----VFHSPDWW 455

Query: 1309 MDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGKVLLKFTSGKTLALNNVL 1488
            +D+GA+ H+C +  LF  + +V  G  + MGN   A V G G V LKFTSGKT+ L NV 
Sbjct: 456  VDTGANIHVCADISLFSSY-QVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQ 514

Query: 1489 YVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVIDGLFVLNTDPSTNENS 1668
            +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY   GLF  + +   N ++
Sbjct: 515  HVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHN 574

Query: 1669 ASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKEFSKCAICVEAKHAKKSFK 1842
            A  +I E+   N+WH RL H+N   + RL  M+LI+     + SKC  CV++K  +K  K
Sbjct: 575  AVNHISENDESNVWHSRLCHVNFGCMTRLANMSLISKFTLVKGSKCHTCVQSKQPRKPHK 634

Query: 1843 NVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRYTKVYLLRSKDEAEEMFLK 2022
                ++   LEL+HSDL +    ++KGGKKY++T +DD +R+  VYLL++KDEA   F  
Sbjct: 635  ASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKI 694

Query: 2023 FKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEFSAPYTPQQNGVAERKNRT 2202
            +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE S PY+PQ NGVAERKNRT
Sbjct: 695  YKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMSPPYSPQSNGVAERKNRT 754

Query: 2203 LKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTPYELWKGFSPNLKYLRVWG 2382
            L EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP+E W+    NL YLR WG
Sbjct: 755  LTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWG 814

Query: 2383 CLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD-------NSICESRDAEFF 2541
            CLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++         +I ESRDA FF
Sbjct: 815  CLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHAGTILESRDATFF 874

Query: 2542 ETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN----EFRRSKRKRVESSFG 2709
            E  FP K    S                 H   +   N E     + R+SKR+RV  SFG
Sbjct: 875  ENEFPMKYTP-STSSKETVMPHEHFAPIEHDDQTPEENPEEDNIVDTRKSKRQRVAKSFG 933

Query: 2710 PDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDASFWKEAIKSELDSIMVN 2889
             D+I                   V+L+++ P+T +EA +S DA +WKEA++SE+DSIM N
Sbjct: 934  DDYI-------------------VYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSN 974

Query: 2890 DTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYSQKKGIDFFDTYSPVTK 3069
             TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  GY+QK+G DFFDTYSPV +
Sbjct: 975  GTWEVVEHPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVAR 1034

Query: 3070 VATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEG-LAEPNKNKVCKLKKSL 3246
            + TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +G + E  +  VCKL KSL
Sbjct: 1035 LTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSL 1094

Query: 3247 YGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVIICLYVDDMLILGTNISV 3426
            YGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + VI+CLYVDD+LI GT+++V
Sbjct: 1095 YGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNV 1154

Query: 3427 VNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSHYIEKVLKRFNYFDVDPVK 3603
            + E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSHY++KVL RF Y D  P  
Sbjct: 1155 IEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGYSDCKPAP 1214

Query: 3604 TPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAVSRLSRYTHNPNNEHWD 3783
            TPYD +  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++AVS+LSR+  NP ++HW 
Sbjct: 1215 TPYDPNVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWQ 1274

Query: 3784 ALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSSTSGYVFTLGGCAISWKS 3963
            AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD +E+ + SGY FTLGG A+SWKS
Sbjct: 1275 ALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDANEIKAISGYAFTLGGGAVSWKS 1334

Query: 3964 SKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVPVSIHCDSQAAIGIAKN 4143
             KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +  + ++CD+Q  I    +
Sbjct: 1335 CKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNS 1394

Query: 4144 SIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTKGLPRKVVLESSRGMGL 4320
            S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD FTKGLPR V+  +SR MGL
Sbjct: 1395 SKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDSASREMGL 1454

Query: 4321 KPT 4329
             PT
Sbjct: 1455 IPT 1457


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score = 1115 bits (2883), Expect = 0.0
 Identities = 591/1279 (46%), Positives = 815/1279 (63%), Gaps = 17/1279 (1%)
 Frame = +1

Query: 544  EGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVVGN 723
            E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+  
Sbjct: 19   EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQ 78

Query: 724  WLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLKHK 903
            +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LKHK
Sbjct: 79   FYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHK 138

Query: 904  KRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKDHQ 1080
            +++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK   
Sbjct: 139  RQEFSVLDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKA 198

Query: 1081 RKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXXXX 1260
              NF  +       K    C+VCGK GH A  C +RKD+++ N  + +            
Sbjct: 199  ATNFKKKSKG----KANGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKILP 254

Query: 1261 XXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKGKV 1440
                    V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G V
Sbjct: 255  TVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAAVHGVGTV 309

Query: 1441 LLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGYVI 1620
             LKFTSGKT+ L NV +VPS+++N+VSGSLL R   ++  ES+K ++++   FVGKGY  
Sbjct: 310  DLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYETFVGKGYDS 369

Query: 1621 DGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKEFS 1794
             GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      + S
Sbjct: 370  GGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGS 429

Query: 1795 KCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRYTK 1974
            KC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+  
Sbjct: 430  KCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCY 489

Query: 1975 VYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEFSA 2154
            VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE + 
Sbjct: 490  VYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTP 549

Query: 2155 PYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTPYE 2334
            PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP+E
Sbjct: 550  PYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFE 609

Query: 2335 LWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD--- 2505
             W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++    
Sbjct: 610  EWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVP 669

Query: 2506 ----NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN--- 2664
                 +I ESRDA FFE  FP K    S                 H   +   N E    
Sbjct: 670  DMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEYFAPIEHNDQTPEENPEEDNI 728

Query: 2665 -EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSIDAS 2841
             + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S DA 
Sbjct: 729  VDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPDAD 769

Query: 2842 FWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVGYS 3021
            +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  GY+
Sbjct: 770  YWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYT 829

Query: 3022 QKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHEG- 3198
            QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +G 
Sbjct: 830  QKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGY 889

Query: 3199 LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCVII 3378
            + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + VI+
Sbjct: 890  VLEGQEGMVCKLLKSLYGLKQAPKQWHKKFDTTLTSAGFVVNEADKCVYYRYGGGEGVIL 949

Query: 3379 CLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSHYI 3555
            CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSHY+
Sbjct: 950  CLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYV 1009

Query: 3556 EKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAYAV 3735
            +KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++AV
Sbjct: 1010 DKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAV 1069

Query: 3736 SRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVSST 3915
            S+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ +T
Sbjct: 1070 SKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKAT 1129

Query: 3916 SGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQLVP 4095
            SGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +  
Sbjct: 1130 SGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPA 1189

Query: 4096 VSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPFTK 4272
            + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD FTK
Sbjct: 1190 ILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTK 1249

Query: 4273 GLPRKVVLESSRGMGLKPT 4329
            GLPR V+  +SR MGL PT
Sbjct: 1250 GLPRNVIDSASREMGLIPT 1268


>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1453

 Score = 1114 bits (2881), Expect = 0.0
 Identities = 598/1341 (44%), Positives = 834/1341 (62%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 158  FAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 203

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             ++
Sbjct: 204  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYIM 261

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 262  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 321

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 322  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 381

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 382  KAATNFKKKGKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 437

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 438  LPTVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VERGSSLLMGNGSLAAVHGVG 492

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 493  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGY 552

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I ++   N+WH RL H+N   + RL  M+LI      +
Sbjct: 553  DSGGLFRFSLNDMCNNHNAVNHISKNDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 612

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 613  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGMLTKGGKKYFMTLIDDCTRF 672

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 673  CYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 732

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNR L EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 733  TPPYSPQSNGVAERKNRILTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTP 792

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDDN 2508
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 793  FEEWERKKLNLSYLRTWGCLAKVNVPIVKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNFG 852

Query: 2509 -------SICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  F  K    S                 H   +   N E  
Sbjct: 853  VPDMHAATIFESRDATFFENEFLMKYTP-STSSKETVMLHEHFAPIEHNDETPEENPEED 911

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 912  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 952

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSI+ N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 953  ADYWKEAVRSEIDSIISNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKG 1012

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 1013 YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1072

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L + GFVVN +D CVY +  G + V
Sbjct: 1073 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTAAGFVVNEADKCVYYRYGGGEGV 1132

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1133 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1192

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1193 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1252

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LS +  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1253 AVSKLSWFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1312

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1313 ATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPV 1372

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1373 PAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1432

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1433 TKGLPRNVIDSASREMGLIPT 1453


>gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1452

 Score = 1113 bits (2879), Expect = 0.0
 Identities = 601/1341 (44%), Positives = 831/1341 (61%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 161  FAAALKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 206

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D++++  S K +W+ LE             V+
Sbjct: 207  --EEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVM 264

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ ++EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 265  EQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 324

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 325  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 384

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 385  KAATNFKKKGKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 440

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H+C +  LF  ++ V  G  + MGN   A V G G
Sbjct: 441  LPTVLS----VFHSPDWWVDTGANIHVCADISLFSSYQ-VGRGSSLLMGNGSLAVVHGVG 495

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 496  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYETFVGKGY 555

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 556  DSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMMRLANMSLIPKFTLVK 615

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 616  GSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 675

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 676  CYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 735

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 736  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTP 795

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  +K  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 796  FEEWERKKLNLSYLRTWGCLAKVNVPIVKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 855

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 856  VPDMHAGTIFESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEED 914

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA  S D
Sbjct: 915  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYLSPD 955

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSIM N TW++V+ P GCKP+ CKW+FK+K+RPD TIEK+KARLV  G
Sbjct: 956  ADYWKEAVRSEMDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKG 1015

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYSPV ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 1016 YTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 1075

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 1076 GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1135

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS      DLGE DVIL IK+ R  E G +L QSH
Sbjct: 1136 ILCLYVDDILIFGTSLNVIEEVKDYLSK----SDLGEADVILNIKLQRGDEGGITLVQSH 1191

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1192 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1251

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1252 AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1311

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGY FTLGG A+SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1312 ATSGYAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPV 1371

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1372 PAILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1431

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1432 TKGLPRNVIDSASREMGLIPT 1452


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 600/1341 (44%), Positives = 828/1341 (61%), Gaps = 17/1341 (1%)
 Frame = +1

Query: 358  FCDLSKLEPLDGTNYKRWSKKLLIFFEQLEIDYVLSQDAPQNETTANISVITLIGSSQNE 537
            F    K    DG+NYKRW  + L++   ++  YV      +   +               
Sbjct: 38   FAATLKPHAFDGSNYKRWKARALLWLTAMQCFYVSRGKRSEPPLSP-------------- 83

Query: 538  IDEGTRKFEKDNRTARGHLLNHMSNSLFDLFVNKKSAKIIWETLEXXXXXXXXXXXXXVV 717
              E   KFE  +   RG L++ +++++ D+++   S K +W+ LE             V+
Sbjct: 84   --EEEAKFEASDCLFRGALISVLADNIVDVYMYMPSGKEMWDALEAKFGVSDAGSELYVM 141

Query: 718  GNWLRFQMVDDKPIMEQVHVYENLVTEVLNEGMKMCEILQANVLLEKFPSLWNDYRNQLK 897
              +  ++MVDD+ I+EQ H  + L  E+ N   ++ +   A  ++ K P  W+D+   LK
Sbjct: 142  EQFYDYKMVDDRSIVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLK 201

Query: 898  HKKRDLSLQELISHMRTEEANRLKDKQISNSTSSVKANLVESAGTSKNRNKGKEKY-VKD 1074
            HK+++ S+ +LI  +  EE  R KD +         AN+V+      + N  K K  VK 
Sbjct: 202  HKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKP 261

Query: 1075 HQRKNFTPRQNDHKIQKPKVSCYVCGKGGHKAYQCKDRKDQQNQNQRLIKPQANLXXXXX 1254
                NF  +       K K  C+VCGK GH A  C +RKD+++ N  + +          
Sbjct: 262  KAATNFKKKSKG----KAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKI 317

Query: 1255 XXXXXXXTNLVEDKSAWIMDSGASRHLCNNRRLFHEFEEVTDGGQVYMGNDGTARVIGKG 1434
                      V     W +D+GA+ H             V  G  + MGN   A V G G
Sbjct: 318  LPTVLS----VFHSPDWWVDTGANIH-------------VGRGSSLLMGNGSLAAVHGVG 360

Query: 1435 KVLLKFTSGKTLALNNVLYVPSLRRNMVSGSLLVRAGLKVTLESDKVIITRNNDFVGKGY 1614
             V LKFTSGKT+ L NV +VPS+++N+VSGSLL R G ++  ES+K ++++   FVGKGY
Sbjct: 361  TVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGY 420

Query: 1615 VIDGLFVLNTDPSTNENSASAYIVES--VNMWHGRLGHLNIASIKRLKTMNLINVVDSKE 1788
               GLF  + +   N ++A  +I E+   N+WH RL H+N   + RL  M+LI      +
Sbjct: 421  DSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVK 480

Query: 1789 FSKCAICVEAKHAKKSFKNVAYKSTQLLELIHSDLADFKNTMSKGGKKYYITFVDDYSRY 1968
             SKC  CV++K  +K  K    ++   LEL+HSDL +    ++KGGKKY++T +DD +R+
Sbjct: 481  GSKCHTCVQSKQPRKPHKASEVRNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRF 540

Query: 1969 TKVYLLRSKDEAEEMFLKFKAEAENQLDRRIKRLRSDRGGEYSTNFLKDFCEKNGIIHEF 2148
              VYLL++KDEA   F  +KAE ENQL+R+IKRLRSDRGGEY +N    FCE+ GIIHE 
Sbjct: 541  CYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEM 600

Query: 2149 SAPYTPQQNGVAERKNRTLKEMMNAMLISSGLSDNMWGEAVLSACYILNKVPHKKLDKTP 2328
            + PY+PQ NGVAERKNRTL EM+NAML ++GLS   WGEAVL+AC++LNK+P K  + TP
Sbjct: 601  TPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEITP 660

Query: 2329 YELWKGFSPNLKYLRVWGCLAKVALPDFRKPNIGPKTFDCVFIGYAIDGAAYRFMCLDD- 2505
            +E W+    NL YLR WGCLAKV +P  ++  +GPKT DCVF+GYAI    YRF+ ++  
Sbjct: 661  FEEWERKKLNLSYLRTWGCLAKVNVPIAKRRKLGPKTVDCVFLGYAIHSVGYRFLIVNSG 720

Query: 2506 ------NSICESRDAEFFETNFPFKKNDISDIGXXXXXXXXXXXXCVHGCSSNLNNQEN- 2664
                   +I ESRDA FFE  FP K    S                 H   +   N E  
Sbjct: 721  VPDMHVGTILESRDATFFENEFPMKYTP-STSSKETVMPHEHFAPIEHNDQTPEENPEKD 779

Query: 2665 ---EFRRSKRKRVESSFGPDFITAFLVENDNLDKVNDNIVSVFLLEEDPKTYKEALTSID 2835
               + R+SKR+RV  SFG D+I                   V+L+++ P+T +EA +S D
Sbjct: 780  NIVDTRKSKRQRVAKSFGDDYI-------------------VYLVDDTPRTIEEAYSSPD 820

Query: 2836 ASFWKEAIKSELDSIMVNDTWDLVDLPKGCKPIKCKWIFKRKMRPDNTIEKFKARLVVVG 3015
            A +WKEA++SE+DSIM NDTW++V+ P GCKP+ CKW+FK+K++PD TIEK+KARLV  G
Sbjct: 821  ADYWKEAVRSEMDSIMSNDTWEVVERPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKG 880

Query: 3016 YSQKKGIDFFDTYSPVTKVATIRSLIALASIYELVIHQMDVKTAFLNGDLEEEIYMEQHE 3195
            Y+QK+G DFFDTYS V ++ TIR L+ALA+ + L++HQMDVKTAFLNG+LEEEIYM+Q +
Sbjct: 881  YTQKEGEDFFDTYSLVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPD 940

Query: 3196 G-LAEPNKNKVCKLKKSLYGLKQAPKQWYMKFDHSLISNGFVVNASDTCVYSKVIGFDCV 3372
            G + E  +  VCKL KSLYGLKQAPKQW+ KFD +L S GFVVN +D CVY +  G + V
Sbjct: 941  GYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGV 1000

Query: 3373 IICLYVDDMLILGTNISVVNETKTFLSSQFDMKDLGEVDVILGIKV-RKTENGYSLCQSH 3549
            I+CLYVDD+LI GT+++V+ E K +LS  F+MKDLGE DVIL IK+ R  E G +L QSH
Sbjct: 1001 ILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSH 1060

Query: 3550 YIEKVLKRFNYFDVDPVKTPYDSSKCLKKNKGIGISQPEYAKIIGSVMFLMNYTRPDIAY 3729
            Y++KVL RF Y D  P  TPYD S  L+KN+ I   Q  Y++IIGS+M+L + TRPDI++
Sbjct: 1061 YVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISF 1120

Query: 3730 AVSRLSRYTHNPNNEHWDALYRLLQYLKGTLNWCLQFNKFPGVLEGYCDANWVSDNDEVS 3909
            AVS+LSR+  NP ++HW AL R+++YLKGT+++ + +  +P VLEGY D+NW+SD DE+ 
Sbjct: 1121 AVSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIK 1180

Query: 3910 STSGYVFTLGGCAISWKSSKQTCIARSTMEAEFIALELAGQEAEWLKNLLADIPLWKKQL 4089
            +TSGYVFTLGG  +SWKS KQT + RSTMEAE  AL+ A  EAEWL+ LL D+P+ +K +
Sbjct: 1181 ATSGYVFTLGGGDVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPV 1240

Query: 4090 VPVSIHCDSQAAIGIAKNSIYNGK-KRHIRIRHGIVKQLLKNGVISLDYVRSENNLADPF 4266
              + ++CD+Q  I    +S  N K  RHI+ R   V++   +GVI+LDYV++  NLAD F
Sbjct: 1241 PAILMNCDNQTMIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQF 1300

Query: 4267 TKGLPRKVVLESSRGMGLKPT 4329
            TKGLPR V+  +SR MGL PT
Sbjct: 1301 TKGLPRNVIDSASREMGLIPT 1321