BLASTX nr result

ID: Chrysanthemum21_contig00050174 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00050174
         (510 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVI03570.1| Pentatricopeptide repeat-containing protein [Cyna...    61   1e-07
ref|XP_023772360.1| pentatricopeptide repeat-containing protein ...    59   5e-07
ref|XP_022010152.1| pentatricopeptide repeat-containing protein ...    56   6e-06

>gb|KVI03570.1| Pentatricopeptide repeat-containing protein [Cynara cardunculus
           var. scolymus]
          Length = 481

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/47 (65%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
 Frame = +1

Query: 1   TLAITHRLDLLSCVLDFIISNPCPFSNCIFSCSALHP--SFSLPSIC 135
           TLAITHRLD LS VLDFI+SNPCP S+ IFSCS   P   F++ S C
Sbjct: 117 TLAITHRLDSLSPVLDFIVSNPCPCSDGIFSCSRTEPIFRFAINSFC 163


>ref|XP_023772360.1| pentatricopeptide repeat-containing protein At2g36240 [Lactuca
           sativa]
 gb|PLY78874.1| hypothetical protein LSAT_5X164841 [Lactuca sativa]
          Length = 482

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = +1

Query: 1   TLAITHRLDLLSCVLDFIISNPCPFSNCIFSCSALHPSF 117
           TLAITHRLD LS +LDFI+SNPCP S+ IFSCS   P F
Sbjct: 115 TLAITHRLDSLSPLLDFIVSNPCPCSDGIFSCSRTEPIF 153


>ref|XP_022010152.1| pentatricopeptide repeat-containing protein At2g36240 [Helianthus
           annuus]
 ref|XP_022010156.1| pentatricopeptide repeat-containing protein At2g36240 [Helianthus
           annuus]
 gb|OTG33252.1| putative pentatricopeptide (PPR) repeat-containing protein
           [Helianthus annuus]
          Length = 481

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 26/39 (66%), Positives = 30/39 (76%)
 Frame = +1

Query: 1   TLAITHRLDLLSCVLDFIISNPCPFSNCIFSCSALHPSF 117
           TLAITHRLD L  V+DFI+SNPCP S+ IFSC+   P F
Sbjct: 117 TLAITHRLDPLLSVVDFIVSNPCPCSDGIFSCNRTEPIF 155


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