BLASTX nr result
ID: Chrysanthemum21_contig00047680
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Chrysanthemum21_contig00047680
(859 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX92072.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 58 3e-25
gb|KYP54676.1| Retrovirus-related Pol polyprotein from transposo... 87 3e-24
dbj|GAU35592.1| hypothetical protein TSUD_295280 [Trifolium subt... 60 4e-24
gb|PNX96884.1| transposon Tf2-1 polyprotein [Trifolium pratense] 57 5e-24
dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subt... 59 2e-23
gb|KYP63732.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan] 84 8e-23
gb|PNY00121.1| hypothetical protein L195_g023397 [Trifolium prat... 60 1e-22
gb|PNY16670.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 81 1e-22
dbj|GAU37038.1| hypothetical protein TSUD_207440 [Trifolium subt... 69 1e-22
gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifo... 86 1e-22
ref|XP_006589833.1| PREDICTED: uncharacterized protein LOC102662... 86 1e-22
dbj|GAU29880.1| hypothetical protein TSUD_379700 [Trifolium subt... 55 2e-22
gb|PNX92003.1| retrotransposon-related protein [Trifolium pratense] 59 3e-22
gb|KYP37665.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan] 82 4e-22
gb|PNX87538.1| hypothetical protein L195_g043629 [Trifolium prat... 57 1e-21
gb|KYP71832.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan] 82 1e-21
gb|PNX77624.1| Ty3/gypsy retrotransposon protein [Trifolium prat... 80 1e-21
gb|KYP46337.1| Retrovirus-related Pol polyprotein from transposo... 63 2e-21
dbj|GAU38891.1| hypothetical protein TSUD_67540 [Trifolium subte... 55 3e-21
dbj|GAU46429.1| hypothetical protein TSUD_402070 [Trifolium subt... 56 3e-21
>gb|PNX92072.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 1498
Score = 57.8 bits (138), Expect(3) = 3e-25
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L RD L QL+ L +AQ RM + A+KK + F +G++VFVKL+ +RQH + + N
Sbjct: 1276 ELEDRDEALRQLREQLQKAQDRMAQLANKKRCDRKFEVGEWVFVKLRAHRQHSVVCRINA 1335
Query: 202 KLGMRYF 222
KL RY+
Sbjct: 1336 KLAARYY 1342
Score = 57.4 bits (137), Expect(3) = 3e-25
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = +3
Query: 198 SKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLLSA 377
+K+ + P+ VL + G VAYKL+LPA SR+HP+FHVS LK VG D+ LP L
Sbjct: 1335 AKLAARYYGPYPVLARVGAVAYKLKLPAGSRVHPIFHVSLLKKAVGTYQDEE-ELPELEG 1393
Query: 378 PEG 386
+G
Sbjct: 1394 EQG 1396
Score = 49.7 bits (117), Expect(3) = 3e-25
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 389 LTHPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVCFDG 562
L P +IL R V+V+NE QVL+ W GQ EE TWE LR + LEDK G
Sbjct: 1398 LIEPEDILARRSVQVQNEWVDQVLIHWKGQKLEEATWEDTVMLRSQFPQFCLEDKGVISG 1457
Query: 563 GGML 574
G ++
Sbjct: 1458 GSIV 1461
>gb|KYP54676.1| Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus
cajan]
Length = 847
Score = 87.0 bits (214), Expect(2) = 3e-24
Identities = 49/94 (52%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L +RD +L QLK NL +AQ MK ADK+ R+L F IGD+V VKLQPYRQH + L+K QK
Sbjct: 613 LRERDVLLQQLKSNLFKAQQYMKSQADKRRRDLHFEIGDWVLVKLQPYRQHSVVLRKVQK 672
Query: 205 LGMRYFVHFEFFNRL----VKLPTS*SCLLHLVY 294
L MRYF FE ++ KL S S +H V+
Sbjct: 673 LSMRYFGPFEVIAKVGEVAYKLKLSDSARIHPVF 706
Score = 53.9 bits (128), Expect(2) = 3e-24
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWD--GQEEHTWESWHQLRQHYHNIDLEDKVCFD 559
P P +LDSR + ++ QVL+QWD G TWE ++R+ + +LEDKV FD
Sbjct: 734 PSVQPFLVLDSRIIMRNSKSIPQVLIQWDSLGSSAATWEDVKEIRESFPQFNLEDKVAFD 793
Query: 560 GGGML 574
GG ++
Sbjct: 794 GGSIV 798
Score = 70.1 bits (170), Expect = 1e-09
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLL 371
K K+ F PF V+ + G+VAYKL+L ++RIHPVFH+S LK VG P+ QY+PLPL
Sbjct: 669 KVQKLSMRYFGPFEVIAKVGEVAYKLKLSDSARIHPVFHISLLKKFVGSPSQQYLPLPLT 728
Query: 372 SAPEG 386
+ G
Sbjct: 729 TTEFG 733
>dbj|GAU35592.1| hypothetical protein TSUD_295280 [Trifolium subterraneum]
Length = 1358
Score = 60.1 bits (144), Expect(3) = 4e-24
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +3
Query: 219 FCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPL 362
F PF V + G +AYKL+LP+T+RIHPVFH+S LK G TD Y PL
Sbjct: 1186 FGPFPVTAKIGSIAYKLQLPSTARIHPVFHISQLKKFNGSATDPYYPL 1233
Score = 53.9 bits (128), Expect(3) = 4e-24
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = +1
Query: 64 NLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQKLGMRYFVHF 231
NL +AQ MK ADKK + F IGD V VKLQPYRQ + + N K ++YF F
Sbjct: 1134 NLHKAQQAMKFQADKKRLPMEFTIGDMVLVKLQPYRQTVVATRANHKSSLKYFGPF 1189
Score = 46.6 bits (109), Expect(3) = 4e-24
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWDGQEEH--TWESWHQLRQHYHNIDLEDKVCFD 559
PL P IL R + L QVLV+W +E TWE ++ ++Y N +LEDK+ F+
Sbjct: 1242 PLLQPESILKVRTILKGPLLVPQVLVKWQDIDESLATWEDKKEILENYPNFNLEDKIVFN 1301
Query: 560 GGGML 574
GG ++
Sbjct: 1302 GGSIV 1306
>gb|PNX96884.1| transposon Tf2-1 polyprotein [Trifolium pratense]
Length = 924
Score = 57.0 bits (136), Expect(3) = 5e-24
Identities = 26/66 (39%), Positives = 43/66 (65%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L R A++ +L+ NL + Q +MK YAD+K R++ + IG +V+V+L+PYRQ + K
Sbjct: 706 LSNRQALILKLRRNLLKTQEKMKFYADQKRRQVNYEIGQFVYVRLRPYRQSSVTNHSYSK 765
Query: 205 LGMRYF 222
L R++
Sbjct: 766 LSKRFY 771
Score = 55.5 bits (132), Expect(3) = 5e-24
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 383 RPLTHPIEILDSRRVRVKNELEIQVLVQWDG--QEEHTWESWHQLRQHYHNIDLEDKVCF 556
+PL P+ ILD + + VLVQW G ++ TWE+W L+Q YH LEDKV F
Sbjct: 825 KPLVEPLTILDEKMNTATDPPTPMVLVQWSGLPLQDTTWETWDSLQQAYH---LEDKVTF 881
Query: 557 DGGG 568
GGG
Sbjct: 882 PGGG 885
Score = 48.1 bits (113), Expect(3) = 5e-24
Identities = 26/57 (45%), Positives = 34/57 (59%)
Frame = +3
Query: 198 SKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPL 368
SK+ + P+ + ++ G VAY+LELP S+IHPVFH S LK G PLPL
Sbjct: 764 SKLSKRFYGPYRIQEKIGPVAYRLELPPHSKIHPVFHCSLLKLHKG-------PLPL 813
>dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subterraneum]
Length = 1524
Score = 58.5 bits (140), Expect(3) = 2e-23
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L R + L+ L +AQ +MK YADKK REL++ +GD+V+VKL+PYRQ + K
Sbjct: 1281 LTTRQQTITVLQRKLLKAQEKMKFYADKKRRELSYVVGDFVYVKLRPYRQQSLTGSTCSK 1340
Query: 205 LGMRYF 222
L R++
Sbjct: 1341 LSKRFY 1346
Score = 50.4 bits (119), Expect(3) = 2e-23
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 383 RPLTHPIEILDSRRVRVKNELEIQVLVQWDG--QEEHTWESWHQLRQHYHNIDLEDKVCF 556
+P+ P+ ILDS+ + QVLVQW G E+ TWE W L ++H LEDKV F
Sbjct: 1401 QPVIQPLAILDSKMDHSVTPPQRQVLVQWLGLLPEDTTWEDWDTLNSNFH---LEDKVNF 1457
Query: 557 DGGG 568
GG
Sbjct: 1458 PAGG 1461
Score = 49.3 bits (116), Expect(3) = 2e-23
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +3
Query: 198 SKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLP 365
SK+ + P+ +++ G VAYKLELP S+IHPVFH S LK G T LP
Sbjct: 1339 SKLSKRFYGPYKIVECIGPVAYKLELPPQSKIHPVFHCSLLKQHRGSLTAAPDDLP 1394
>gb|KYP63732.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
Length = 1084
Score = 84.3 bits (207), Expect(2) = 8e-23
Identities = 48/94 (51%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L QRD L QLK +L +AQ RMKK+ADKK L F IG+ V VKLQPYRQH + L+K+QK
Sbjct: 840 LLQRDVTLNQLKTHLVKAQQRMKKFADKKRIPLEFDIGELVLVKLQPYRQHSVALRKHQK 899
Query: 205 LGMRYFVHFEFFNRL----VKLPTS*SCLLHLVY 294
LG+RYF F ++ KL S +H V+
Sbjct: 900 LGLRYFGPFPIIKKIGSVAYKLLLPASAKIHSVF 933
Score = 52.0 bits (123), Expect(2) = 8e-23
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWDGQE--EHTWESWHQLRQHYHNIDLEDKVCFD 559
P+ P ILDSR + ++ QVL+QWDG + + TWE + + Y N LEDKV F
Sbjct: 961 PVVQPSRILDSRTIIRGDQHIAQVLIQWDGLDATQATWEDATVIHKDYPNFYLEDKVDFY 1020
Query: 560 GGG 568
GGG
Sbjct: 1021 GGG 1023
Score = 68.6 bits (166), Expect = 3e-09
Identities = 32/61 (52%), Positives = 43/61 (70%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLL 371
K K+G F PF ++++ G VAYKL LPA+++IH VFHVS LK C G+ Y+PLPLL
Sbjct: 896 KHQKLGLRYFGPFPIIKKIGSVAYKLLLPASAKIHSVFHVSLLKKCKGNHQTPYLPLPLL 955
Query: 372 S 374
+
Sbjct: 956 T 956
>gb|PNY00121.1| hypothetical protein L195_g023397 [Trifolium pratense]
Length = 1118
Score = 60.1 bits (144), Expect(3) = 1e-22
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L RD L QL+ L RAQ RMK+ ADKK + +F IG++VFVKL+ +RQ + + N
Sbjct: 897 ELLDRDEALRQLRQQLQRAQDRMKQLADKKRCDRSFEIGEWVFVKLRAHRQQSVVCRINA 956
Query: 202 KLGMRYF 222
KL RY+
Sbjct: 957 KLAARYY 963
Score = 50.1 bits (118), Expect(3) = 1e-22
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +3
Query: 198 SKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGD 338
+K+ + P+ V+ + G VAY+L+LP S++HPVFHVS LK VG+
Sbjct: 956 AKLAARYYGPYPVIARVGAVAYQLKLPEGSKVHPVFHVSLLKKAVGN 1002
Score = 45.8 bits (107), Expect(3) = 1e-22
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 389 LTHPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVCFDG 562
L P +L +R V ++NE QVL+ W GQ EE TWE ++ + N LEDK G
Sbjct: 1019 LIEPEAVLANRFVWMQNEKVDQVLIHWKGQKVEEATWEDVLMMKSQFPNFCLEDKTNLSG 1078
Query: 563 GGML 574
G ++
Sbjct: 1079 GSIV 1082
>gb|PNY16670.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 752
Score = 80.9 bits (198), Expect(2) = 1e-22
Identities = 47/95 (49%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L QRD I+ QLK NL RAQ MK A KK +++ F +GD V V+LQPYRQH L+KNQ
Sbjct: 512 QLIQRDVIMDQLKQNLMRAQHVMKHQAGKKRKDVEFKLGDKVLVRLQPYRQHSAALRKNQ 571
Query: 202 KLGMRYFVHFEFFNRL----VKLPTS*SCLLHLVY 294
KL MRYF FE ++ KL S +H V+
Sbjct: 572 KLSMRYFGPFEVIAKIGTVAYKLDLPPSAKIHSVF 606
Score = 55.1 bits (131), Expect(2) = 1e-22
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQW--DGQEEHTWESWHQLRQHYHNIDLEDKVCFD 559
P +P ++LDSR V + Q+L+QW + E WE +++++ +Y ++LEDKV F
Sbjct: 634 PTLYPTQVLDSRMVMQASVANPQILIQWGNEANAEAKWEDYNEIKNNYPELNLEDKVEFK 693
Query: 560 GGGML 574
GGG++
Sbjct: 694 GGGIV 698
Score = 60.8 bits (146), Expect = 1e-06
Identities = 30/65 (46%), Positives = 40/65 (61%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLL 371
K K+ F PF V+ + G VAYKL+LP +++IH VFHV+ LK G D Y+PLPL
Sbjct: 569 KNQKLSMRYFGPFEVIAKIGTVAYKLDLPPSAKIHSVFHVAQLKEFKGSNDDPYLPLPLT 628
Query: 372 SAPEG 386
+ G
Sbjct: 629 TTEVG 633
>dbj|GAU37038.1| hypothetical protein TSUD_207440 [Trifolium subterraneum]
Length = 1575
Score = 69.3 bits (168), Expect(3) = 1e-22
Identities = 33/76 (43%), Positives = 53/76 (69%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L RD L QLK++L +AQ +MK +ADK R++ F +GD+VF+KL+P+RQ + + NQ
Sbjct: 1320 ELSDRDEALNQLKLHLIKAQQQMKMFADKHRRDIQFQVGDWVFLKLRPHRQQSVARRINQ 1379
Query: 202 KLGMRYFVHFEFFNRL 249
KL R++ FE +++
Sbjct: 1380 KLVARFYGPFEIVSKV 1395
Score = 54.7 bits (130), Expect(3) = 1e-22
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +3
Query: 225 PF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGD 338
PF ++ + G+VAYKL+LPA S+IHP+FHVS LK +G+
Sbjct: 1388 PFEIVSKVGEVAYKLKLPAQSKIHPIFHVSLLKKAIGE 1425
Score = 31.6 bits (70), Expect(3) = 1e-22
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 395 HPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVCFDGGG 568
+P +IL SR + Q LVQW + ++ TWE L + + LEDK F G
Sbjct: 1445 YPTKILGSRFIMQNGIATPQSLVQWRHKSVDDVTWEDNSFLTGQFPEVSLEDKARFAEGS 1504
Query: 569 M 571
+
Sbjct: 1505 I 1505
>gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
Length = 1139
Score = 74.7 bits (182), Expect(2) = 1e-22
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLL 371
K K+G F PF VL + G VAY+L+LP ++IHPVFHVS LKPC G+ + Y+PLPLL
Sbjct: 912 KNQKLGLRYFGPFTVLAKVGPVAYRLQLPPGTKIHPVFHVSLLKPCKGEHDNTYLPLPLL 971
Query: 372 SAPEG 386
G
Sbjct: 972 QHAHG 976
Score = 60.8 bits (146), Expect(2) = 1e-22
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWDG--QEEHTWESWHQLRQHYHNIDLEDKVCFD 559
PL P+ +L +R V +L Q L+QWDG + E TWE L+++Y +++LEDKV F+
Sbjct: 977 PLLTPLRVLQTRMVPSNGQLIAQALIQWDGLTEAEATWEDCLTLKKNYPSLNLEDKVVFN 1036
Query: 560 GGGMLYY 580
GGG + Y
Sbjct: 1037 GGGNVTY 1043
Score = 85.9 bits (211), Expect = 5e-15
Identities = 44/69 (63%), Positives = 51/69 (73%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L +RD +L QLK NL AQ MKK+ADKK R L F +GD V VKLQPYRQH + L+KNQK
Sbjct: 856 LIERDVVLQQLKSNLLTAQGFMKKFADKKRRILEFQVGDSVLVKLQPYRQHSVVLRKNQK 915
Query: 205 LGMRYFVHF 231
LG+RYF F
Sbjct: 916 LGLRYFGPF 924
>ref|XP_006589833.1| PREDICTED: uncharacterized protein LOC102662523 [Glycine max]
Length = 721
Score = 85.9 bits (211), Expect(2) = 1e-22
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L +RD ++ QLK NL +AQ MKK+AD K R + F IGD V VKLQPYRQH + L+ NQK
Sbjct: 486 LMERDVVIVQLKANLTKAQIFMKKFADSKRRAMDFNIGDMVLVKLQPYRQHSVALRSNQK 545
Query: 205 LGMRYFVHFEFFNRL----VKLPTS*SCLLHLVY 294
LG+RYF F ++ KL S +H V+
Sbjct: 546 LGLRYFGPFPIIEKIGEVVYKLMLPPSAKIHPVF 579
Score = 49.7 bits (117), Expect(2) = 1e-22
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 359 ITFIVRSRRPLTHPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNI 532
+ + PL P IL R + N+ QVLV W+G E TW+ W L Y ++
Sbjct: 598 LPLLTNENGPLLIPKSILQFRILLRNNQHVPQVLVHWEGLPGSEATWKDWVPLHHAYPSL 657
Query: 533 DLEDKVCFDGG 565
+LEDKV F+GG
Sbjct: 658 NLEDKVVFNGG 668
Score = 72.0 bits (175), Expect = 2e-10
Identities = 32/62 (51%), Positives = 44/62 (70%)
Frame = +3
Query: 201 KVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLLSAP 380
K+G F PF ++++ G+V YKL LP +++IHPVFH+S LKPC G QY+PLPLL+
Sbjct: 545 KLGLRYFGPFPIIEKIGEVVYKLMLPPSAKIHPVFHISLLKPCKGVHDTQYMPLPLLTNE 604
Query: 381 EG 386
G
Sbjct: 605 NG 606
>dbj|GAU29880.1| hypothetical protein TSUD_379700 [Trifolium subterraneum]
Length = 1340
Score = 55.1 bits (131), Expect(3) = 2e-22
Identities = 29/67 (43%), Positives = 42/67 (62%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L RD L QL+ L RAQ RMK+ AD+K + F +G++VFVKL+ +RQ + +
Sbjct: 1120 ELLDRDEALRQLRAQLQRAQDRMKQMADRKRCDRNFEVGEWVFVKLRAHRQQSVVCRIYA 1179
Query: 202 KLGMRYF 222
KL RY+
Sbjct: 1180 KLAARYY 1186
Score = 50.1 bits (118), Expect(3) = 2e-22
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 198 SKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLLSA 377
+K+ + P+ ++ + G VAY+L+LP SR+HPVFHVS LK VG ++ LP L
Sbjct: 1179 AKLAARYYGPYPIVARVGAVAYQLKLPEGSRVHPVFHVSLLKKVVGSYHEEE-ALPELEG 1237
Query: 378 PEG 386
G
Sbjct: 1238 ENG 1240
Score = 50.1 bits (118), Expect(3) = 2e-22
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 389 LTHPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVCFDG 562
L P +L S+ V+V+NE Q+LVQW GQ EE TWE +R + LEDK G
Sbjct: 1242 LIEPERVLASKVVQVQNEKVDQILVQWKGQGAEEATWEDAVMIRSQFPQFCLEDKTIVSG 1301
Query: 563 GGML 574
G ++
Sbjct: 1302 GSIV 1305
>gb|PNX92003.1| retrotransposon-related protein [Trifolium pratense]
Length = 1571
Score = 58.9 bits (141), Expect(3) = 3e-22
Identities = 32/75 (42%), Positives = 44/75 (58%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L RD L QLK L +AQ RMK ADKK + +F G++VFVKL+ +RQ + + N K
Sbjct: 1344 LADRDEALRQLKSQLLKAQERMKMQADKKRIDRSFVCGEWVFVKLRAHRQQSVVTRINAK 1403
Query: 205 LGMRYFVHFEFFNRL 249
L RY+ + R+
Sbjct: 1404 LAARYYGLYPIIERI 1418
Score = 49.7 bits (117), Expect(3) = 3e-22
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +3
Query: 234 VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGD 338
++++ G VAYKL+LP SR+HPVFHVS LK VG+
Sbjct: 1414 IIERIGAVAYKLKLPEGSRVHPVFHVSLLKKAVGN 1448
Score = 45.8 bits (107), Expect(3) = 3e-22
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 398 PIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVCFDGGGM 571
P +L +R V+ + E QVLV W G+ EE TWE +R + +LEDKV +GGG+
Sbjct: 1468 PESVLAARLVKQQGEDIKQVLVHWKGKTVEEATWEDELVIRSQFPKFNLEDKVTAEGGGV 1527
Query: 572 L 574
+
Sbjct: 1528 V 1528
>gb|KYP37665.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
Length = 976
Score = 82.0 bits (201), Expect(2) = 4e-22
Identities = 42/75 (56%), Positives = 51/75 (68%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L RD + LK NL +AQ MKKYAD+K + F +GD VFVKLQPYRQH + L+KNQK
Sbjct: 735 LLHRDQTILCLKQNLMKAQNLMKKYADQKRVHVEFQVGDLVFVKLQPYRQHSVALRKNQK 794
Query: 205 LGMRYFVHFEFFNRL 249
LG+RYF F R+
Sbjct: 795 LGLRYFGPFPVMQRI 809
Score = 52.0 bits (123), Expect(2) = 4e-22
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +2
Query: 359 ITFIVRSRRPLTHPIEILDSRRVRVKNELEIQVLVQWDGQE--EHTWESWHQLRQHYHNI 532
+ F+ P+ P+++L SR + +N+ QVLVQW+G + + TWE L+ Y N
Sbjct: 847 LPFLTNEFGPVIQPLKVLQSRVILRENQHIPQVLVQWEGLDISQVTWEDALTLQSEYPNF 906
Query: 533 DLEDKVCFDGG 565
+LEDKV GG
Sbjct: 907 NLEDKVVVHGG 917
Score = 77.8 bits (190), Expect = 3e-12
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLL 371
K K+G F PF V+Q+ G VAYKL LP T++IHPVFHVS LKPC G+ QY+PLP L
Sbjct: 791 KNQKLGLRYFGPFPVMQRIGLVAYKLALPPTAKIHPVFHVSLLKPCKGEHQQQYLPLPFL 850
Query: 372 S 374
+
Sbjct: 851 T 851
>gb|PNX87538.1| hypothetical protein L195_g043629 [Trifolium pratense]
Length = 343
Score = 56.6 bits (135), Expect(3) = 1e-21
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +3
Query: 201 KVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPL 368
K+ + P+ + Q G+VA+KL+LP+ S+IHPVFH S LKPC D T + + +P+
Sbjct: 183 KLSKRFYGPYKITQAIGEVAFKLDLPSASKIHPVFHASLLKPCF-DSTAEPLEMPI 237
Score = 52.4 bits (124), Expect(3) = 1e-21
Identities = 30/66 (45%), Positives = 41/66 (62%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L +RD IL LK L +AQ MK+ AD+K F GD VFVKL+PYRQ+ + ++ K
Sbjct: 124 LVERDEILQILKQKLLKAQETMKEIADQKRIPHKFKEGDLVFVKLRPYRQNSVAGRRIHK 183
Query: 205 LGMRYF 222
L R++
Sbjct: 184 LSKRFY 189
Score = 43.5 bits (101), Expect(3) = 1e-21
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWDG--QEEHTWESWHQLRQHYHNIDLEDKVCFD 559
P+ P+ +LD + QVL+QW G E+ TWE + + Y +LEDKVC D
Sbjct: 244 PVIQPLAVLDWKEESSAGTT--QVLIQWKGLFPEDATWEDYEDICTTYPEFNLEDKVCLD 301
Query: 560 GGG 568
G
Sbjct: 302 DPG 304
>gb|KYP71832.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
Length = 511
Score = 82.0 bits (201), Expect(2) = 1e-21
Identities = 42/75 (56%), Positives = 51/75 (68%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L RD + LK NL +AQ MKKYAD+K + F +GD VFVKLQPYRQH + L+KNQK
Sbjct: 278 LLHRDQTILCLKQNLMKAQNLMKKYADQKRVHVEFQVGDLVFVKLQPYRQHSVALRKNQK 337
Query: 205 LGMRYFVHFEFFNRL 249
LG+RYF F R+
Sbjct: 338 LGLRYFGPFPVMQRI 352
Score = 50.1 bits (118), Expect(2) = 1e-21
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 359 ITFIVRSRRPLTHPIEILDSRRVRVKNELEIQVLVQWDGQE--EHTWESWHQLRQHYHNI 532
+ F+ P+ P+++L R + +N+ QVLVQW+G + + TWE L+ Y N
Sbjct: 390 LPFLTNEFGPVIQPLKVLQFRVILRENQHIPQVLVQWEGLDISQATWEDALTLQSEYPNF 449
Query: 533 DLEDKVCFDGG 565
+LEDKV GG
Sbjct: 450 NLEDKVVVHGG 460
Score = 78.2 bits (191), Expect = 2e-12
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLL 371
K K+G F PF V+Q+ G VAYKL LP T++IHPVFHVS LKPC G+ QY+PLP L
Sbjct: 334 KNQKLGLRYFGPFPVMQRIGPVAYKLALPPTAKIHPVFHVSLLKPCKGEHQQQYLPLPFL 393
Query: 372 S 374
+
Sbjct: 394 T 394
>gb|PNX77624.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
gb|PNY16672.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
Length = 367
Score = 80.1 bits (196), Expect(2) = 1e-21
Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L +RD +L QLK NL +AQ MK ADK +++ F +G+ V V+LQPYRQ + L+KNQ
Sbjct: 125 ELKERDKLLQQLKSNLEKAQQYMKHQADKHRKDVKFQVGEMVLVRLQPYRQQSVALRKNQ 184
Query: 202 KLGMRYFVHFEFF----NRLVKLPTS*SCLLHLVY 294
KLGMRYF FE N KL + +H V+
Sbjct: 185 KLGMRYFGPFEILACVGNVAYKLKLPDNAKIHPVF 219
Score = 52.0 bits (123), Expect(2) = 1e-21
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWD--GQEEHTWESWHQLRQHYHNIDLEDKVCFD 559
P+ P+ +L +R +R + Q+LVQW+ ++ TWE H L+ + ++LEDKV F+
Sbjct: 247 PIIQPVAVLQARTIRKGTQKVHQILVQWEQNSKDAATWEDLHDLQFKFPTLNLEDKVVFN 306
Query: 560 GGGML 574
G G++
Sbjct: 307 GEGIV 311
Score = 69.3 bits (168), Expect = 1e-09
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = +3
Query: 192 KESKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPL 368
K K+G F PF +L G VAYKL+LP ++IHPVFHVS LKP G+ T+ Y+PLPL
Sbjct: 182 KNQKLGMRYFGPFEILACVGNVAYKLKLPDNAKIHPVFHVSQLKPFKGNVTEHYLPLPL 240
>gb|KYP46337.1| Retrovirus-related Pol polyprotein from transposon 297 family
[Cajanus cajan]
Length = 630
Score = 63.2 bits (152), Expect(3) = 2e-21
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L RD L QLK++L RAQ MKK DK E +F GD VF+KL+ +RQHP+ + +
Sbjct: 410 ELQDRDEALRQLKVHLVRAQEWMKKQTDKHRIERSFKQGDMVFLKLKQHRQHPVVARISP 469
Query: 202 KLGMRYFVHFEFFNRL 249
RY+ FE R+
Sbjct: 470 NFSARYYGPFELIERI 485
Score = 50.4 bits (119), Expect(3) = 2e-21
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +3
Query: 225 PF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGD 338
PF ++++ G+VAY+L+LP S+IHP+FHVS LK +G+
Sbjct: 478 PFELIERIGEVAYRLKLPPESKIHPLFHVSLLKKAIGN 515
Score = 38.1 bits (87), Expect(3) = 2e-21
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 380 RRPLTHPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVC 553
R L P +L S + + Q LVQW G+ EE TWE +R + + LEDK
Sbjct: 530 RAELMQPELVLASHSLMKGEDKMNQWLVQWKGKTAEEATWEDEIAIRSQFPELSLEDKTV 589
Query: 554 FDGGGM 571
GG+
Sbjct: 590 LQEGGI 595
>dbj|GAU38891.1| hypothetical protein TSUD_67540 [Trifolium subterraneum]
Length = 1384
Score = 55.1 bits (131), Expect(3) = 3e-21
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 25 LHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQK 204
L R ++ +LK L +AQ RMK +AD+K R+++F + +V+VKL+PYRQ K
Sbjct: 1154 LSNRQQLITKLKAILTKAQTRMKYFADQKRRDVSFDVNSWVYVKLRPYRQKTATSSAYTK 1213
Query: 205 LGMRYFVHFEFFNRL 249
L Y+ F+ R+
Sbjct: 1214 LFPHYYGPFKVLARI 1228
Score = 55.1 bits (131), Expect(3) = 3e-21
Identities = 30/55 (54%), Positives = 34/55 (61%)
Frame = +3
Query: 225 PF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLLSAPEGH 389
PF VL + G VAY LELPA+S+IHPVFH S LKP G P D P+L H
Sbjct: 1221 PFKVLARIGHVAYHLELPASSKIHPVFHCSLLKPHQG-PLDTTTNSPILPPASVH 1274
Score = 40.8 bits (94), Expect(3) = 3e-21
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 386 PLTHPIEILDSRRVRVKNELEIQVLVQWDG--QEEHTWESWHQLRQHYHNIDLEDKVCF 556
P+ P+ I+ S+ + VLVQW G E+ +WE+W L + YH LEDKV F
Sbjct: 1277 PIISPLAIISSKWNTSTDPSTRMVLVQWKGLNPEDTSWENWPTLSETYH---LEDKVSF 1332
>dbj|GAU46429.1| hypothetical protein TSUD_402070 [Trifolium subterraneum]
Length = 1026
Score = 55.8 bits (133), Expect(3) = 3e-21
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +1
Query: 22 KLHQRDAILAQLKINLGRAQARMKKYADKK*RELAFAIGDYVFVKLQPYRQHPIKLQKNQ 201
+L RD + QL+ L RAQ RMK+ ADKK E +F IG++VFVKL+ +RQ + +
Sbjct: 808 ELLDRDEAIRQLRQQLLRAQDRMKQQADKKRCERSFNIGEWVFVKLRAHRQQSVVSRIYA 867
Query: 202 KLGMRYF 222
KL RY+
Sbjct: 868 KLSARYY 874
Score = 51.2 bits (121), Expect(3) = 3e-21
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3
Query: 198 SKVGHALFCPF*VLQQTGQVAYKLELPATSRIHPVFHVSFLKPCVGDPTDQYIPLPLLSA 377
+K+ + P+ V+ + G VAY+L+LPA +++HP+FHVS LK +G+ ++ LP LS
Sbjct: 867 AKLSARYYGPYPVVARIGAVAYQLKLPAGAKVHPIFHVSLLKKAIGNYNEE-TELPDLSD 925
Query: 378 PEG 386
G
Sbjct: 926 DSG 928
Score = 43.9 bits (102), Expect(3) = 3e-21
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 389 LTHPIEILDSRRVRVKNELEIQVLVQWDGQ--EEHTWESWHQLRQHYHNIDLEDKVCFDG 562
L P IL R ++V E QVL+QW GQ +E TWE ++ + ++ EDK +G
Sbjct: 930 LVDPESILADRYIQVNGEQVHQVLIQWKGQSADEATWEDSLLIKGQFPDVCFEDKASLNG 989
Query: 563 GGM 571
G +
Sbjct: 990 GSI 992