BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00044743
         (1000 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        413   e-132
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     412   e-130
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   412   e-130
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   395   e-127
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   397   e-126
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     399   e-126
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            401   e-125
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   401   e-123
emb|CAJ86151.1| H0413E07.4 [Oryza sativa]                             382   e-120
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     374   e-116
dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]            357   e-114
gb|ASR75372.1| retrotransposon protein [Oryza nivara]                 356   e-110
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   358   e-110
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   353   e-109
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   347   e-106
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   345   e-106
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     341   e-104
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   321   2e-96
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   321   2e-96
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   320   3e-96

>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  413 bits (1062), Expect = e-132
 Identities = 201/326 (61%), Positives = 254/326 (77%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967  GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
            G DK    WS++EK R DRKA+S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLT
Sbjct: 39   GFDKRTQDWSNDEKKR-DRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLT 97

Query: 787  SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
            SKMHLKQKLF  K+QD GS+++HLS FKEI+ DLE+MEVKYDE+DL LILLCSLPSSY+N
Sbjct: 98   SKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYAN 157

Query: 607  FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRG----RPTEXXXXX 440
            FRDTILYSRDTLTL+EVY+ALHAKEKMK MV +EGS+S+ E L+VRG    + T      
Sbjct: 158  FRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRD 217

Query: 439  XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                               KYCK++GHDIS+C+KL++K+KR      K  ++++GKAA  
Sbjct: 218  KSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVV 277

Query: 259  AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
             +  S+ ++LV +AGC +T+D+WILD+ACT+HM PN+DWF  YE ++GG+VLMGD++P +
Sbjct: 278  TDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 337

Query: 79   IVGVGSIQIKMFDGVVRTLSDVRHVP 2
            + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 338  VAGIGTVQIKMFDGCIRTLSDVRHIP 363


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  412 bits (1058), Expect = e-130
 Identities = 201/326 (61%), Positives = 254/326 (77%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967  GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
            G DK    WS++EK +KDRKA+S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLT
Sbjct: 74   GFDKRTQDWSNDEK-KKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLT 132

Query: 787  SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
            SKMHLKQKLF  K+QD GS+++HLS FKEI+ DLE++EVKYDEEDLGLILLCSLPSSY+N
Sbjct: 133  SKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYAN 192

Query: 607  FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXX 440
            FRDTILYS DTL L+EVY+ALHAKEKMK MV +EGS+S+ E L+VRGR     T+     
Sbjct: 193  FRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRD 252

Query: 439  XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                               KYCK++GHDISEC+KL++K+KR      K  ++++GKAA  
Sbjct: 253  KSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVV 312

Query: 259  AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
             +  S+ ++LV +AGC +T+D+WILD+A T+HM PN+DWF  YE ++GG+VLMGD++P +
Sbjct: 313  TDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCE 372

Query: 79   IVGVGSIQIKMFDGVVRTLSDVRHVP 2
            + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 373  VAGIGTVQIKMFDGYIRTLSDVRHIP 398


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  412 bits (1058), Expect = e-130
 Identities = 201/326 (61%), Positives = 254/326 (77%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967  GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
            G DK    WS++EK +KDRKA+S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLT
Sbjct: 74   GFDKRTQDWSNDEK-KKDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLT 132

Query: 787  SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
            SKMHLKQKLF  K+QD GS+++HLS FKEI+ DLE++EVKYDEEDLGLILLCSLPSSY+N
Sbjct: 133  SKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYAN 192

Query: 607  FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXX 440
            FRDTILYS DTL L+EVY+ALHAKEKMK MV +EGS+S+ E L+VRGR     T+     
Sbjct: 193  FRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRD 252

Query: 439  XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                               KYCK++GHDISEC+KL++K+KR      K  ++++GKAA  
Sbjct: 253  KSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVV 312

Query: 259  AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
             +  S+ ++LV +AGC +T+D+WILD+A T+HM PN+DWF  YE ++GG+VLMGD++P +
Sbjct: 313  TDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCE 372

Query: 79   IVGVGSIQIKMFDGVVRTLSDVRHVP 2
            + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 373  VAGIGTVQIKMFDGYIRTLSDVRHIP 398


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  395 bits (1016), Expect = e-127
 Identities = 196/324 (60%), Positives = 244/324 (75%), Gaps = 4/324 (1%)
 Frame = -1

Query: 961  DKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSK 782
            DK    WS++EK R DRKA+S+IHLHLSNNIL EVLKE TAA LWLKLEQICMTKDLTSK
Sbjct: 41   DKRTQDWSNDEKKR-DRKAMSYIHLHLSNNILHEVLKEETAAGLWLKLEQICMTKDLTSK 99

Query: 781  MHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFR 602
            MHLKQKLF  K+QD  S+++HLS FKEI+TDLE+MEVKYDEEDLGLILLCSLPSSY+NFR
Sbjct: 100  MHLKQKLFLHKLQDDESVMDHLSAFKEIVTDLESMEVKYDEEDLGLILLCSLPSSYANFR 159

Query: 601  DTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXXXX 434
            DTILYSRDTLTL+EVY+ LHAKEKMK MV +EGS+S+ E L+VRGR     T        
Sbjct: 160  DTILYSRDTLTLKEVYDTLHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKS 219

Query: 433  XXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYAAE 254
                             KY K++ HDISEC+KL++K+KR      K  ++ +GKA    +
Sbjct: 220  SSSYRGRSKSRGKYKSYKYYKRDRHDISECWKLQDKDKRTGKYVPKGKKEKEGKAVVVTD 279

Query: 253  NNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYKIV 74
              S+ ++LV +AGC +T+D+WILD+ACT HM PN+DWF  YE ++GG+V MGD++P ++ 
Sbjct: 280  GKSDAELLVAYAGCAQTSDQWILDTACTNHMCPNRDWFATYEALQGGTVFMGDDTPCEVA 339

Query: 73   GVGSIQIKMFDGVVRTLSDVRHVP 2
             +G++QIKMFDG +RTLSDV H+P
Sbjct: 340  DIGTVQIKMFDGCIRTLSDVWHIP 363


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1138

 Score =  397 bits (1021), Expect = e-126
 Identities = 192/305 (62%), Positives = 239/305 (78%), Gaps = 4/305 (1%)
 Frame = -1

Query: 904 LSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKMHLKQKLFSLKMQDGGSLL 725
           +S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLTSKMHLKQKLF  K+QD GS++
Sbjct: 1   MSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVM 60

Query: 724 EHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRDTILYSRDTLTLQEVYEAL 545
           +HLS FKEI+ DLE+MEVKYDEEDLGLILLCSLPSSY+NFRDTILYSRDTLTL+EVY+AL
Sbjct: 61  DHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDAL 120

Query: 544 HAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXXXXXXXXXXXXXXXXXXXXXKY 377
           H KEKMK MV +EGS+S+ E L+VRGR     T+                        KY
Sbjct: 121 HTKEKMKKMVPSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRSKSRGRYKSCKY 180

Query: 376 CKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYAAENNSNGDVLVVFAGCVKTND 197
           CK++GHDISEC+KL++K+KR      K  ++++GKAA   +  S+ ++LV +AGC +T+D
Sbjct: 181 CKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDEKSDAELLVAYAGCAQTSD 240

Query: 196 EWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYKIVGVGSIQIKMFDGVVRTLSD 17
           +WILD+ACT+HM PN+DWF  YE ++GG+VLMGD++P ++ G+G +QIKMFDG +RTLSD
Sbjct: 241 QWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCIRTLSD 300

Query: 16  VRHVP 2
           VRH P
Sbjct: 301 VRHFP 305


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  399 bits (1024), Expect = e-126
 Identities = 198/326 (60%), Positives = 249/326 (76%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967  GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
            G DK    WS++EK R DRK +S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLT
Sbjct: 39   GFDKRTQDWSNDEKKR-DRKTMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLT 97

Query: 787  SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
            SKMHLKQKLF  K+QD GS+++HLS FK+I+ DLE+MEVKYDEEDL LILLCSLPSSY+N
Sbjct: 98   SKMHLKQKLFLHKLQDDGSVMDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYAN 157

Query: 607  FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXX 440
            FRDTILYS DTLTL+EVY+ALHAKEK+K MV +EGS+S+ E L+VRGR     T      
Sbjct: 158  FRDTILYSCDTLTLKEVYDALHAKEKIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRD 217

Query: 439  XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                               KY K++GHDISEC+KL++K+KR      K  ++++GKAA  
Sbjct: 218  KSSSSYRGRSKSRGRYKSCKYYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVV 277

Query: 259  AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
             +  S+ ++LV +AGC +T+D+WILD+ACT+HM  N+DWF  YE ++GG+VLMGD++P +
Sbjct: 278  TDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCE 337

Query: 79   IVGVGSIQIKMFDGVVRTLSDVRHVP 2
            + GV ++QIKMFDG +RTLSDVRH+P
Sbjct: 338  VAGVETVQIKMFDGCIRTLSDVRHIP 363


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  401 bits (1030), Expect = e-125
 Identities = 198/326 (60%), Positives = 248/326 (76%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967  GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
            G DK    WS++EK R DRKA+S+IHLHLSNNILQEVLKE  AA LWLKLEQICMTKDLT
Sbjct: 39   GFDKRTHDWSNDEKKR-DRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLT 97

Query: 787  SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
            SKMHLKQ LF  K+QD GS+++HLS FKEII DLE+MEVKYDEEDLGLILLCSLPSSY+N
Sbjct: 98   SKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYAN 157

Query: 607  FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXX 440
            FRDTILYSRDTLTL+EVY+ALH KEKMK MV +EGS+S+ E L+V GR     T+     
Sbjct: 158  FRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRD 217

Query: 439  XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                               KYCK++GHDI EC+KL +K+KR      K  ++++GKAA  
Sbjct: 218  KSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 277

Query: 259  AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
             +  S+ ++LV +AGC +T+D+WIL++AC +HM PN+DWF  YE ++ G+VLMGD++P +
Sbjct: 278  TDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCE 337

Query: 79   IVGVGSIQIKMFDGVVRTLSDVRHVP 2
            + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 338  VAGIGTVQIKMFDGCIRTLSDVRHIP 363


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  401 bits (1030), Expect = e-123
 Identities = 198/326 (60%), Positives = 248/326 (76%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967  GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
            G DK    WS++EK R DRKA+S+IHLHLSNNILQEVLKE  AA LWLKLEQICMTKDLT
Sbjct: 246  GFDKRTHDWSNDEKKR-DRKAMSYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLT 304

Query: 787  SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
            SKMHLKQ LF  K+QD GS+++HLS FKEII DLE+MEVKYDEEDLGLILLCSLPSSY+N
Sbjct: 305  SKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYAN 364

Query: 607  FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXX 440
            FRDTILYSRDTLTL+EVY+ALH KEKMK MV +EGS+S+ E L+V GR     T+     
Sbjct: 365  FRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRD 424

Query: 439  XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                               KYCK++GHDI EC+KL +K+KR      K  ++++GKAA  
Sbjct: 425  KSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVV 484

Query: 259  AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
             +  S+ ++LV +AGC +T+D+WIL++AC +HM PN+DWF  YE ++ G+VLMGD++P +
Sbjct: 485  TDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCE 544

Query: 79   IVGVGSIQIKMFDGVVRTLSDVRHVP 2
            + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 545  VAGIGTVQIKMFDGCIRTLSDVRHIP 570


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
          Length = 1205

 Score =  382 bits (982), Expect = e-120
 Identities = 189/326 (57%), Positives = 243/326 (74%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967 GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
           G DK    WS++EK + DRKA+S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLT
Sbjct: 39  GFDKRTQDWSNDEK-KMDRKAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLT 97

Query: 787 SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
           +                GS+++HLS+FKEI+ DLE+MEVKYDEEDLGLILLCSLPSSY+N
Sbjct: 98  ND---------------GSVMDHLSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYAN 142

Query: 607 FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRG----RPTEXXXXX 440
           FRDTILYSRDTLTL+EVY+ALHAKEKMK MV +EGS+S+ E L+V+G    + T      
Sbjct: 143 FRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRD 202

Query: 439 XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                              KYCK++GHDIS+C+KL++K+KR      K  ++D+GKAA  
Sbjct: 203 KSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVV 262

Query: 259 AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
            +  S+ ++LV +AGC +T+D+WILD+ACT+HM PN+DWF  YE ++GG+VLMGD++P +
Sbjct: 263 TDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCE 322

Query: 79  IVGVGSIQIKMFDGVVRTLSDVRHVP 2
           + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 323 VAGIGTVQIKMFDGCIRTLSDVRHIP 348


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  374 bits (959), Expect = e-116
 Identities = 189/326 (57%), Positives = 240/326 (73%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967 GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
           G DK    WS++EK R DRKA+S+IHLHLSNNILQEVLKE TAA LWLKLEQICMTKDLT
Sbjct: 39  GFDKRTQDWSNDEKKR-DRKAISYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLT 97

Query: 787 SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
           SKMHLKQKLF  K+QD  S+++HLS FKEI+ DLE+MEVKYDE+DLGLILLCSLPSSY+N
Sbjct: 98  SKMHLKQKLFLHKLQDDESVMDHLSAFKEIVADLESMEVKYDEDDLGLILLCSLPSSYAN 157

Query: 607 FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----TEXXXXX 440
           FR TILYSRDTLTL+EVY+A HAKEKMK MV++EGS+S+ E L+VRGR     T+     
Sbjct: 158 FRGTILYSRDTLTLKEVYDAFHAKEKMKKMVTSEGSNSQAEGLVVRGRQQKKNTKNQSRD 217

Query: 439 XXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAYA 260
                              KYCK++GHDISEC+KL++K+KR      K  ++++GKAA  
Sbjct: 218 KSSSSYRGRTKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVV 277

Query: 259 AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
            +  S+ ++LV +AGC +T+D+               DWF  YE ++GG+VLMGD++P +
Sbjct: 278 TDEKSDAELLVAYAGCAQTSDQ---------------DWFATYEALQGGTVLMGDDTPCE 322

Query: 79  IVGVGSIQIKMFDGVVRTLSDVRHVP 2
           + G+G++QIKMFDG +RTLSDV+H+P
Sbjct: 323 VAGIGTVQIKMFDGCIRTLSDVQHIP 348


>dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]
          Length = 778

 Score =  357 bits (917), Expect = e-114
 Identities = 182/326 (55%), Positives = 236/326 (72%), Gaps = 4/326 (1%)
 Frame = -1

Query: 967 GRDKMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLT 788
           G DK    WS +EK +KD K +S+IHLHLSNNILQEVLKE TA  LWLKL+QICMTKDLT
Sbjct: 39  GFDKRTQDWSVDEK-KKDHKVMSYIHLHLSNNILQEVLKEETAVGLWLKLKQICMTKDLT 97

Query: 787 SKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSN 608
           SKMHLKQKLF  K+QD  S+++HLS FKEI+ DLE+MEVK+DEEDLGLILLCSLPSSY+N
Sbjct: 98  SKMHLKQKLFLHKLQDDESVMDHLSAFKEIVADLESMEVKHDEEDLGLILLCSLPSSYAN 157

Query: 607 FRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMV---RGRPTEXXXXXX 437
           FRDTILYSRDTLTL+EVY+ALHAKEKMK MV +EGS+S+ ESL+V     R T+      
Sbjct: 158 FRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAESLVVGVGNRRRTQ------ 211

Query: 436 XXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKP-NQDDDGKAAYA 260
                                       +   ++K +     +Q+ +   ++++GKAA  
Sbjct: 212 ----------------------------TTNQEIKAQVATVGDQSPEAGKKEEEGKAAVV 243

Query: 259 AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMGDNSPYK 80
            +  S+ ++LV + GC +T+D+WILD+ACT+HM PN+DWF  YE ++GG+VLMGD++P +
Sbjct: 244 TDEKSDAELLVAYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCE 303

Query: 79  IVGVGSIQIKMFDGVVRTLSDVRHVP 2
           + G+G++QIKMFDG +RTLSDVRH+P
Sbjct: 304 VAGIGTVQIKMFDGCIRTLSDVRHIP 329


>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
          Length = 1170

 Score =  356 bits (913), Expect = e-110
 Identities = 190/327 (58%), Positives = 237/327 (72%), Gaps = 8/327 (2%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K    W+ EEK RKDRKALS I LHLSN+ILQEVL+E TAA LWLKLE ICM+KDLTSKM
Sbjct: 44  KKTTEWTAEEK-RKDRKALSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKM 102

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
           H+K KLFS K+Q+ GS+L H+S+FKEI+ DL +MEV++D+EDLGL+LLCSLPSSY+NFRD
Sbjct: 103 HIKMKLFSHKLQESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRD 162

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVR-----GRPTEXXXXXXX 434
           TIL SRD LTL EVYEAL  +EKMK MV ++ SSSKGE+L VR       PT        
Sbjct: 163 TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVREADLSREPT--TTAMIV 220

Query: 433 XXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAY--A 260
                            KYCKK+ H I EC+KL+NKEKR +          DGKA+   +
Sbjct: 221 TRARVEAVLKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKS----------DGKASVVTS 270

Query: 259 AENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPY 83
           AEN+ +GD LVVFAGCV ++DEWILD+AC+FH+  N+DWF +Y+ ++ G V+ MGD++P 
Sbjct: 271 AENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPR 330

Query: 82  KIVGVGSIQIKMFDGVVRTLSDVRHVP 2
           +IVG+GS+QIK  DG+ RTL DVRH+P
Sbjct: 331 EIVGIGSVQIKTHDGMTRTLKDVRHIP 357


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1326

 Score =  358 bits (919), Expect = e-110
 Identities = 188/324 (58%), Positives = 237/324 (73%), Gaps = 5/324 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K    W+ EEK RKDRKAL  I LHLSN+ILQEVL+E TAA LWLKLE ICM+KDLTSKM
Sbjct: 44  KKSTEWTAEEK-RKDRKALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKM 102

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
           H+K KLFS K+Q+ GS+L H+S+FKEI+ DL ++EV++D+EDLGL+LLCSLPSSY+NFRD
Sbjct: 103 HIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRD 162

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRPTE--XXXXXXXXXX 425
           TIL SRD LTL EVYEAL  +EKMK MV ++ SSSKGE+L VRGR  +            
Sbjct: 163 TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDKS 222

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAY--AAEN 251
                         KYCKK+ H I EC+KL+NKEKR +          DGKA+   +AEN
Sbjct: 223 QSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKS----------DGKASVVTSAEN 272

Query: 250 NSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKIV 74
           + +GD LVVFAGCV ++DEWILD+AC+FH+  N+DWF +Y+ ++ G V+ MGD++P +IV
Sbjct: 273 SDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIV 332

Query: 73  GVGSIQIKMFDGVVRTLSDVRHVP 2
           G+GS+QIK  DG+ RTL DVRH+P
Sbjct: 333 GIGSVQIKTHDGMTRTLKDVRHIP 356


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  353 bits (907), Expect = e-109
 Identities = 186/324 (57%), Positives = 236/324 (72%), Gaps = 5/324 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K    W+  EK RKDRKALS I LHLSN+ILQEVL+E TAA LWLKLE ICM+KDLTSKM
Sbjct: 44  KKTTEWTTGEK-RKDRKALSLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKM 102

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
           H+K KLFS K+Q+ GS+L H+S+FKEI+ DL +MEV++D+EDLGL+LLCSLPSSY NFRD
Sbjct: 103 HIKMKLFSHKLQESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYENFRD 162

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRPTE--XXXXXXXXXX 425
           TIL SRD LTL EVYEAL  +EKMK MV ++ SSSKGE+L V+GR  +            
Sbjct: 163 TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKS 222

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAY--AAEN 251
                         KYCKK+ H I EC+KL+NKEKR +          DGKA+   +A+N
Sbjct: 223 KSRGRSKSRGKKFCKYCKKKIHFIKECWKLQNKEKRKS----------DGKASVVTSAKN 272

Query: 250 NSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKIV 74
           + +GD LVVFAGCV ++DEWILD+AC+FH+  N+DWF +Y+ ++ G V+ MG+++P +IV
Sbjct: 273 SDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIV 332

Query: 73  GVGSIQIKMFDGVVRTLSDVRHVP 2
           G+GS+QIK  DG+ RTL DVRH+P
Sbjct: 333 GIGSVQIKTHDGITRTLKDVRHIP 356


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
           Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1322

 Score =  347 bits (890), Expect = e-106
 Identities = 185/324 (57%), Positives = 233/324 (71%), Gaps = 5/324 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K    W+ EEK RKDRKALS I LHLSN+ILQEVL++ TAA LWLKLE ICM+KDLTSKM
Sbjct: 44  KKTTEWTAEEK-RKDRKALSLIQLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKM 102

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
           H+K KLFS K+ + GS+L H+S+FKEI+ DL +MEV++D+EDLGL+LLCSLPSSY+NFR 
Sbjct: 103 HIKMKLFSHKLHESGSVLNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRH 162

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRPTE--XXXXXXXXXX 425
           TIL SRD LTL EVYEAL  +EKMK MV +  SSSKGE+L VRGR  +            
Sbjct: 163 TILLSRDELTLAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKS 222

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAY--AAEN 251
                         KYCKK+ H I EC+KL+NKEKR +          DGKA+   +AEN
Sbjct: 223 QSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKS----------DGKASVVTSAEN 272

Query: 250 NSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKIV 74
           + +GD LVVFAG V ++DEWILD+AC+FH+  N+DWF +Y+ ++   V+ MGD++P +IV
Sbjct: 273 SDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIV 332

Query: 73  GVGSIQIKMFDGVVRTLSDVRHVP 2
           G+GS+QIK  DG+ RTL DVRH+P
Sbjct: 333 GIGSVQIKTHDGMTRTLKDVRHIP 356


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group]
 gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group]
 gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
           [Oryza sativa Japonica Group]
          Length = 1229

 Score =  345 bits (885), Expect = e-106
 Identities = 183/324 (56%), Positives = 232/324 (71%), Gaps = 5/324 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K    W+ EEK RKDRKALS I LHLSN+ILQ+VL+E TAA LW KLE ICM+KDLTSKM
Sbjct: 41  KKTTEWTAEEK-RKDRKALSLIQLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKM 99

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
           H+K KLFS K+Q+ GS+L H+S+FKEII DL +MEV++D+EDLGL+LLCSLPS Y+NFRD
Sbjct: 100 HIKMKLFSHKLQESGSVLNHISVFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRD 159

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRPTE--XXXXXXXXXX 425
           TIL SRD LTL EVYEAL  +EKMK MV ++ SSSKG++L VRGR  +            
Sbjct: 160 TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGKALQVRGRSEQRTYNDSNDRDKS 219

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGKAAY--AAEN 251
                         KYCKK+ H I EC+KL+NKEKR +          DGKA+   +AEN
Sbjct: 220 QSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKS----------DGKASVVTSAEN 269

Query: 250 NSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKIV 74
           + + D LV FAGCV ++DEWILD+AC F +  N+DWF +++ ++ G V+ MGDN+P +I+
Sbjct: 270 SDSADCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIM 329

Query: 73  GVGSIQIKMFDGVVRTLSDVRHVP 2
           G+GS+QIK  DG+ RTL DVRH+P
Sbjct: 330 GIGSVQIKTHDGMTRTLKDVRHIP 353


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  341 bits (874), Expect = e-104
 Identities = 163/272 (59%), Positives = 209/272 (76%), Gaps = 4/272 (1%)
 Frame = -1

Query: 805 MTKDLTSKMHLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSL 626
           MTKDLTSKMHLKQKLF  K+QD GS+++HLS FKEI+ DLE+MEVKYDEEDLGLILLCSL
Sbjct: 1   MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 625 PSSYSNFRDTILYSRDTLTLQEVYEALHAKEKMKDMVSTEGSSSKGESLMVRGRP----T 458
           PSSY+NFRDTILYSRDTLTL+EVY+ALHAKEKMK MV +EGS+S+ E L+VRGR     T
Sbjct: 61  PSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNT 120

Query: 457 EXXXXXXXXXXXXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDD 278
                                    KYCK++GHDISEC+KL++K+KR      K  ++++
Sbjct: 121 NNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEE 180

Query: 277 GKAAYAAENNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVLMG 98
           GKAA   +  S+ ++LV +AGC +T+D+WILD+ACT+HM PN+DWF  YE ++GG+VLMG
Sbjct: 181 GKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMG 240

Query: 97  DNSPYKIVGVGSIQIKMFDGVVRTLSDVRHVP 2
           D++P ++ G+G++QIKMFDG +RTL DVRH+P
Sbjct: 241 DDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIP 272


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  321 bits (822), Expect = 2e-96
 Identities = 175/325 (53%), Positives = 228/325 (70%), Gaps = 6/325 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K  A W+ EE  RKD+KAL+ I LHL N+ILQE L E T+A LWLKLE ICM+KDLTSKM
Sbjct: 40  KRRAEWTAEE-IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKM 98

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
            +K KLF+LKM++  S++ H++ FK+I+ DL +MEVKYD+EDLGL+LLCSLP+SY+NFRD
Sbjct: 99  QMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRD 158

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEG-SSSKGESLMVRGR-PTEXXXXXXXXXX 425
           TIL SRD LTL+EVY+AL  KEKMK MV  +G SSSKGE+L VRGR              
Sbjct: 159 TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR 218

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGK---AAYAAE 254
                          YCK + H+I EC K++ KE++    N K     DGK   A+ AA 
Sbjct: 219 GRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK----NKK-----DGKVSVASAAAS 269

Query: 253 NNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKI 77
           ++ +GD LVVFAGCV  +DEWILDSAC+FH+   ++WF +Y+P++ G V+ MGD++P  I
Sbjct: 270 DDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAI 329

Query: 76  VGVGSIQIKMFDGVVRTLSDVRHVP 2
           VG+GS+QIK  DG+ RTL +VR++P
Sbjct: 330 VGIGSVQIKTDDGMTRTLKNVRYIP 354


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1373

 Score =  321 bits (822), Expect = 2e-96
 Identities = 175/325 (53%), Positives = 228/325 (70%), Gaps = 6/325 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K  A W+ EE  RKD+KAL+ I LHL N+ILQE L E T+A LWLKLE ICM+KDLTSKM
Sbjct: 40  KRRAEWTAEE-IRKDQKALALIQLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKM 98

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
            +K KLF+LKM++  S++ H++ FK+I+ DL +MEVKYD+EDLGL+LLCSLP+SY+NFRD
Sbjct: 99  QMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRD 158

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEG-SSSKGESLMVRGR-PTEXXXXXXXXXX 425
           TIL SRD LTL+EVY+AL  KEKMK MV  +G SSSKGE+L VRGR              
Sbjct: 159 TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR 218

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGK---AAYAAE 254
                          YCK + H+I EC K++ KE++    N K     DGK   A+ AA 
Sbjct: 219 GRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK----NKK-----DGKVSVASAAAS 269

Query: 253 NNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKI 77
           ++ +GD LVVFAGCV  +DEWILDSAC+FH+   ++WF +Y+P++ G V+ MGD++P  I
Sbjct: 270 DDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAI 329

Query: 76  VGVGSIQIKMFDGVVRTLSDVRHVP 2
           VG+GS+QIK  DG+ RTL +VR++P
Sbjct: 330 VGIGSVQIKTDDGMTRTLKNVRYIP 354


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  320 bits (820), Expect = 3e-96
 Identities = 175/325 (53%), Positives = 228/325 (70%), Gaps = 6/325 (1%)
 Frame = -1

Query: 958 KMPAAWSDEEKARKDRKALSHIHLHLSNNILQEVLKETTAASLWLKLEQICMTKDLTSKM 779
           K  A W+ EE  RKD+KAL+ I LHL N+ILQE L E T+A LWLKLE ICM+KDLTSKM
Sbjct: 40  KRRAEWTAEE-IRKDQKALALIQLHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKM 98

Query: 778 HLKQKLFSLKMQDGGSLLEHLSMFKEIITDLEAMEVKYDEEDLGLILLCSLPSSYSNFRD 599
            +K KLF+LKM++  S++ H++ FK+I+ DL +MEVKYD+EDLGL+LLCSLP+SY+NFRD
Sbjct: 99  QMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRD 158

Query: 598 TILYSRDTLTLQEVYEALHAKEKMKDMVSTEG-SSSKGESLMVRGR-PTEXXXXXXXXXX 425
           TIL SRD LTL+EVY+AL  KEKMK MV  +G SSSKGE+L VRGR              
Sbjct: 159 TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR 218

Query: 424 XXXXXXXXXXXXXXKYCKKEGHDISECYKLKNKEKRAANQNHKPNQDDDGK---AAYAAE 254
                          YCK + H+I EC K++ KE++    N K     DGK   A+ AA 
Sbjct: 219 GRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERK----NKK-----DGKVSVASAAAS 269

Query: 253 NNSNGDVLVVFAGCVKTNDEWILDSACTFHMTPNKDWFINYEPMEGGSVL-MGDNSPYKI 77
           ++ +GD LVVFAGCV  +DEWILDSAC+FH+   ++WF +Y+P++ G V+ MGD++P  I
Sbjct: 270 DDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAI 329

Query: 76  VGVGSIQIKMFDGVVRTLSDVRHVP 2
           VG+GS+QIK  DG+ RTL +VR++P
Sbjct: 330 VGIGSVQIKTDDGMTRTLKNVRYIP 354