BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00040755
         (981 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo...   428   e-145
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   431   e-138
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...   400   e-133
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...   372   e-124
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   363   e-114
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            362   e-110
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   362   e-110
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   359   e-109
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   359   e-109
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   357   e-109
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     353   e-109
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   335   e-108
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   350   e-108
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   337   e-108
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]                        346   e-108
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     348   e-107
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]       339   e-107
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   348   e-106
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   348   e-106
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        348   e-106

>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 507

 Score =  428 bits (1100), Expect = e-145
 Identities = 211/343 (61%), Positives = 258/343 (75%), Gaps = 16/343 (4%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQ R+ F KA H TK+TLDY+H+DCWGPS+VPSLGG RYFLSIIDD+SRMTW+F+ KHK
Sbjct: 85   GKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHK 144

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
            ++AF+ FK WKIL+E QT +++KRLRTDNGLEFCS+EF  +C+ EGIAR YTVR TPQQN
Sbjct: 145  NQAFKCFKEWKILMEKQTSKRVKRLRTDNGLEFCSKEFNDYCKAEGIARQYTVRNTPQQN 204

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRTLLE+ RCLL NAGL RSFWAEA++TTCYL+NRSP+T IDCKTPIEVW+ K 
Sbjct: 205  GVAERMNRTLLERARCLLSNAGLSRSFWAEAVSTTCYLINRSPSTIIDCKTPIEVWSNKP 264

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A+YS LRVFGC AYYHV++GKL PR+ KG+FMGYGDGVKGYRIWSP+ER+VILSRDV FD
Sbjct: 265  ANYSLLRVFGCNAYYHVNEGKLEPRSKKGLFMGYGDGVKGYRIWSPAERKVILSRDVIFD 324

Query: 721  EDHLFRLKQDSVESKLEEGASEKVEHVAKQVD--------VEHEVPEDTDHDVTP----L 864
            E HLF          LE   S K + + KQV+        ++ E  ED + +       +
Sbjct: 325  ESHLF-------YPSLEFTVSGKNQKILKQVEDGKTSGSILDEEKSEDFNEESQQQQFRV 377

Query: 865  DD----PPNSAHLEHEQYRSIALDRPRRDAKAPSRFGFQDYAA 981
            DD     P  + L+  QY + A  +P+R +  P R+GF+D  A
Sbjct: 378  DDSDPSSPQGSSLQ-TQYDTEAYQKPKRISNPPVRYGFEDMMA 419


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  431 bits (1109), Expect = e-138
 Identities = 205/325 (63%), Positives = 251/325 (77%), Gaps = 1/325 (0%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK  R  F KAIH+TK TLDY+H+DCWGP RV SLGG R+F+SIIDD+SRMTWV+MMKHK
Sbjct: 452  GKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHK 511

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
            SEAF+KFK WKIL+ENQTG+KIKRLRTDNGLEFC  EF+ FC+DEGIARH TVR TPQQN
Sbjct: 512  SEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQN 571

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMN+TLLE+ RC+L NAGLDR FWAEA++T CYL+NR P T I CKTP+E+W+GK 
Sbjct: 572  GVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKA 631

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            ADYS L+ FGC AYYHVS+GKL PRA KG+F+GYGDGVKG+RIWSP+E+RVI+SR+V FD
Sbjct: 632  ADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFD 691

Query: 721  EDHLFRLKQDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLEHE 900
            E  L R       +       ++VE    Q + + + PE+ D +     D P S  +  +
Sbjct: 692  ESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPES--MPSD 749

Query: 901  QYRSIALDRPRR-DAKAPSRFGFQD 972
             ++SIA DRPRR   + P+R+GF+D
Sbjct: 750  IHQSIAQDRPRRVGVRPPTRYGFED 774


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 595

 Score =  400 bits (1027), Expect = e-133
 Identities = 195/337 (57%), Positives = 245/337 (72%), Gaps = 11/337 (3%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQ R+ F K +H TK TLDY+HADCWGPSRV SLGG RYFLSIIDD+SRMTW++++ HK
Sbjct: 88   GKQHRIKFPKVVHTTKGTLDYIHADCWGPSRVLSLGGGRYFLSIIDDYSRMTWIYIISHK 147

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
            ++AF  FK WK L+ENQTG+KIKR RT+NGLEFCS EF  FC+D+GI R  TVR TPQQN
Sbjct: 148  NQAFRYFKEWKALMENQTGKKIKRFRTNNGLEFCSAEFNTFCKDKGIVRQLTVRNTPQQN 207

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMN+TLLE+TRCLL NA    +FW EA+NTTC+L+NR+P+TAI  KTPIE+WTGK 
Sbjct: 208  GVAERMNKTLLERTRCLLSNAE-GVTFWGEAVNTTCFLINRTPSTAISLKTPIEIWTGKP 266

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
             +YS LRVFGC AYYHV++GKL PR+ K +FMGYGDGVKGYRIWSPSE++VILSRDV FD
Sbjct: 267  TNYSNLRVFGCNAYYHVNEGKLLPRSRKCLFMGYGDGVKGYRIWSPSEKKVILSRDVIFD 326

Query: 721  EDHLFRLKQDSVESKL------EEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNS 882
            E HLF  K +   +        + G  E +    +  D+  +  E +  +    +   N 
Sbjct: 327  ESHLFHPKLEVPITATHNSHPPQVGKVESISEKTEDKDLLDKFSEASQEEEQSENSSANE 386

Query: 883  AHLEHEQYRSIALD-----RPRRDAKAPSRFGFQDYA 978
            +H ++ +  SI L+     +P+R  K P R+GF+D A
Sbjct: 387  SH-QNAEPDSIQLNPGISQKPKRVIKPPERYGFEDMA 422


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 448

 Score =  372 bits (955), Expect = e-124
 Identities = 167/223 (74%), Positives = 196/223 (87%)
 Frame = +1

Query: 1   GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
           GKQ R+ F KA H TK+TLDY+H+DCWGPS+VPSLGG RYFLSIIDD+SRMTW+F+ KHK
Sbjct: 226 GKQHRIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHK 285

Query: 181 SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
           ++AF+ FK WKIL+E Q  +++KRLRTDNGLEFCS+EF  FC+ EGIAR YTVR TPQQN
Sbjct: 286 NQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFCKAEGIARQYTVRNTPQQN 345

Query: 361 GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
           GVAERMN+TLLE+ RCLL NAGL RSFWAEA++TTCYL+NRSP+T IDCKTPIEVW+ K 
Sbjct: 346 GVAERMNKTLLERARCLLSNAGLSRSFWAEAISTTCYLINRSPSTVIDCKTPIEVWSNKP 405

Query: 541 ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRI 669
           A+YS LRVFGC AYYHV++GKL PR+ KG+FMGYGDGVKGYRI
Sbjct: 406 ANYSLLRVFGCNAYYHVNEGKLEPRSKKGLFMGYGDGVKGYRI 448


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  363 bits (931), Expect = e-114
 Identities = 180/328 (54%), Positives = 229/328 (69%), Gaps = 8/328 (2%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQKRVSFS A H+TK TLDY+H+D WGPS+VPS GG RY ++IIDDFSR  WV+ ++HK
Sbjct: 163  GKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHK 222

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
            +E F  FK WK L+E QTG+K+K+LRTDNGLEFC  +F  FC + GIARH T+   PQQN
Sbjct: 223  NETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQN 282

Query: 361  GVAERMNRTLLEKTRCLLLNAGL--DRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTG 534
            GVAER+NRT+LE+ RC+L NAGL   R  W EA +T CYL+NRSP ++++ K P E+W+G
Sbjct: 283  GVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSG 342

Query: 535  KTADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIW--SPSERRVILSRD 708
               DYS LR+FGCPAY HV+DGKL PRA K IF+GY    KGYR+W      RR+ILSRD
Sbjct: 343  NPIDYSNLRIFGCPAYAHVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRD 402

Query: 709  VTFDEDHLFRL-KQDSVESKLE---EGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPP 876
            VTF+ED L    KQ SV S      +G SEKVE   K V    +VP  +  + + +DD  
Sbjct: 403  VTFNEDALLSSGKQSSVSSSSTNNLQGTSEKVELELKSVAPNVDVPSSSTTE-SSIDDHG 461

Query: 877  NSAHLEHEQYRSIALDRPRRDAKAPSRF 960
            +   ++ ++  +IA DR RR  K P+R+
Sbjct: 462  DDHPIQQQEEYNIARDRTRRQIKLPARY 489


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  362 bits (929), Expect = e-110
 Identities = 172/324 (53%), Positives = 229/324 (70%), Gaps = 4/324 (1%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ + H T+  LDY+H+D WGP+R  S GG RY ++I+DD+SR  W + +KHK
Sbjct: 474  GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHK 533

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +AF+ FK WK ++E QT RK+K LRTDNG+EFCS+ F+++C+ EGI RHYTV +TPQQN
Sbjct: 534  YQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQN 593

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ K RCLL NAGL + FWAEA++T CYL+NRSP+ AID KTPIEVW+G  
Sbjct: 594  GVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP 653

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A+YS LRVFGC AY HV +GKL PRA K IF+GY  GVKGY++W P  ++V++SR+V F 
Sbjct: 654  ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFH 713

Query: 721  EDHLFRLK-QDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVT---PLDDPPNSAH 888
            E  +   K   +V  + +E AS +VEH+          PE  D  +    P+ +  NS+ 
Sbjct: 714  ESVMLHDKPSTNVPVESQEKASVQVEHLIS----SGHAPEKEDVAINQDEPVIEDSNSSI 769

Query: 889  LEHEQYRSIALDRPRRDAKAPSRF 960
            ++    RSIA DRP+R+ K P R+
Sbjct: 770  VQQSPKRSIAKDRPKRNIKPPQRY 793


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  362 bits (929), Expect = e-110
 Identities = 172/324 (53%), Positives = 229/324 (70%), Gaps = 4/324 (1%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ + H T+  LDY+H+D WGP+R  S GG RY ++I+DD+SR  W + +KHK
Sbjct: 681  GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHK 740

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +AF+ FK WK ++E QT RK+K LRTDNG+EFCS+ F+++C+ EGI RHYTV +TPQQN
Sbjct: 741  YQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQN 800

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ K RCLL NAGL + FWAEA++T CYL+NRSP+ AID KTPIEVW+G  
Sbjct: 801  GVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP 860

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A+YS LRVFGC AY HV +GKL PRA K IF+GY  GVKGY++W P  ++V++SR+V F 
Sbjct: 861  ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFH 920

Query: 721  EDHLFRLK-QDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVT---PLDDPPNSAH 888
            E  +   K   +V  + +E AS +VEH+          PE  D  +    P+ +  NS+ 
Sbjct: 921  ESVMLHDKPSTNVPVESQEKASVQVEHLIS----SGHAPEKEDVAINQDEPVIEDSNSSI 976

Query: 889  LEHEQYRSIALDRPRRDAKAPSRF 960
            ++    RSIA DRP+R+ K P R+
Sbjct: 977  VQQSPKRSIAKDRPKRNIKPPQRY 1000


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  359 bits (921), Expect = e-109
 Identities = 184/328 (56%), Positives = 222/328 (67%), Gaps = 8/328 (2%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQ RV FS  IH+TK T+DY H+D WGPS   S GG RY L+ IDD+SR  WV+ +K K
Sbjct: 981  GKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSK 1040

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             E    FK +K LIENQTG+KIKR RTDNGLEFCS EF  FC++EGI RH TVR TPQQN
Sbjct: 1041 YEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQN 1100

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRTLLE+ RC+  NAGL   FWAEA+NT CYLVNRSP+TAI+ KTP EVW+G  
Sbjct: 1101 GVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSP 1160

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPS--ERRVILSRDVT 714
            ADYS LRVFGCPAY HV++GKL PRA K IF+GYG GVKGYR+W P     + I+SRDVT
Sbjct: 1161 ADYSGLRVFGCPAYAHVNEGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVT 1220

Query: 715  FDEDHLFRLKQDSVESKLEEGASEKVEH-VAKQVDVEHEVPEDTD-----HDVTPLDDPP 876
            FDE  + R    +  S+ +E +    +H V KQV+ + + P  T+      D   + D  
Sbjct: 1221 FDESSMLR---STTNSREKEESDRMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSD 1277

Query: 877  NSAHLEHEQYRSIALDRPRRDAKAPSRF 960
                 + + Y SIA  R +R  K   R+
Sbjct: 1278 EDESPQEKPY-SIATGRTKRQIKPNPRY 1304


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  359 bits (921), Expect = e-109
 Identities = 184/328 (56%), Positives = 222/328 (67%), Gaps = 8/328 (2%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQ RV FS  IH+TK T+DY H+D WGPS   S GG RY L+ IDD+SR  WV+ +K K
Sbjct: 960  GKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSK 1019

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             E    FK +K LIENQTG+KIKR RTDNGLEFCS EF  FC++EGI RH TVR TPQQN
Sbjct: 1020 YEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFNEFCKNEGIVRHRTVRRTPQQN 1079

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRTLLE+ RC+  NAGL   FWAEA+NT CYLVNRSP+TAI+ KTP EVW+G  
Sbjct: 1080 GVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSP 1139

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPS--ERRVILSRDVT 714
            ADYS LRVFGCPAY HV++GKL PRA K IF+GYG GVKGYR+W P     + I+SRDVT
Sbjct: 1140 ADYSGLRVFGCPAYAHVNEGKLKPRAKKCIFLGYGQGVKGYRLWCPDPVSSKFIISRDVT 1199

Query: 715  FDEDHLFRLKQDSVESKLEEGASEKVEH-VAKQVDVEHEVPEDTD-----HDVTPLDDPP 876
            FDE  + R    +  S+ +E +    +H V KQV+ + + P  T+      D   + D  
Sbjct: 1200 FDESSMLR---STTNSREKEESDRMGDHGVEKQVECQVDAPIPTEGTSVQDDQVEVQDSD 1256

Query: 877  NSAHLEHEQYRSIALDRPRRDAKAPSRF 960
                 + + Y SIA  R +R  K   R+
Sbjct: 1257 EDESPQEKPY-SIATGRTKRQIKPNPRY 1283


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  357 bits (917), Expect = e-109
 Identities = 175/326 (53%), Positives = 230/326 (70%), Gaps = 6/326 (1%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQ+RV FS   H T   L+Y+H+D WGPS V S  G RY+++ IDDFSR  WV+ +K K
Sbjct: 786  GKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAK 845

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             E F KFK WK ++E +TG+ +K LRTDNGLEFC+++F+ FCR EGI RH TVR+TPQQN
Sbjct: 846  DEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQN 905

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMN+TL+++ RC+ ++AGL + FWAEA+NT  YLVNRSP+TAID KTP EVW+GK 
Sbjct: 906  GVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKP 965

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSER--RVILSRDVT 714
            ++YS L++FGCPAY HVSDGKL PRA K IF+GY  GVKGYR+W   +R  + I+SRDVT
Sbjct: 966  SNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVT 1025

Query: 715  FDEDHLFRLKQD----SVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNS 882
            FDE  +F  +++    +  SK + GA++KVE    +VD   E   D   +  P+ D  +S
Sbjct: 1026 FDESAMFGQRKEFGDLAGTSKTDLGANQKVEF---EVDAPMENGVDDTSEEQPVIDQNDS 1082

Query: 883  AHLEHEQYRSIALDRPRRDAKAPSRF 960
                    +SIA  RPRR+ + P R+
Sbjct: 1083 --------QSIAAXRPRREIRRPMRY 1100


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  353 bits (905), Expect = e-109
 Identities = 165/321 (51%), Positives = 225/321 (70%), Gaps = 1/321 (0%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ + H T+  LDY+H+D WGP+R  S GGARY ++I+DD+SR  W + +KHK
Sbjct: 383  GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHK 442

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +AF+ FK WK ++E QT RK+K LRTDNG+E CS+ F+++C+ EGI RHYTV +TPQQN
Sbjct: 443  YQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQN 502

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ K RC+L NA L + FWAEA++T CYL+NRSP+ AID KTPIEVW+G  
Sbjct: 503  GVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP 562

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A+YS LRVFGC AY HV +GKL PR  K IF+GY  GVKGY++W P  ++V++SR+V F 
Sbjct: 563  ANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFH 622

Query: 721  EDHLFRLK-QDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLEH 897
            E  +   K   +V  + +E  S +VEH+        +     + D   ++D  +S+ ++ 
Sbjct: 623  ESIMLHDKPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIED-SDSSIVQQ 681

Query: 898  EQYRSIALDRPRRDAKAPSRF 960
               RSIA DRP+R+ K P R+
Sbjct: 682  SPKRSIAKDRPKRNTKPPRRY 702


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  335 bits (858), Expect = e-108
 Identities = 161/326 (49%), Positives = 219/326 (67%), Gaps = 2/326 (0%)
 Frame = +1

Query: 1   GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
           GK  R+ FS + H +   LDY+H+D WGPSR  S GGARYFLSI+DDFSR  WV+ +K K
Sbjct: 2   GKASRLKFSTSTHSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQK 61

Query: 181 SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
           +E F++FK WK+L+E Q GR +K+LRTDNGLEFC  +F  FCR+ G+ARH TVR TPQ+N
Sbjct: 62  NEVFDRFKEWKVLVETQIGRNLKKLRTDNGLEFCDEKFSKFCRENGVARHKTVRGTPQKN 121

Query: 361 GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
           G+ ER NRT+LE+ RC+L +AGL +SFWAEA+++  Y +NR P+TA++ KTP EVW+G+ 
Sbjct: 122 GLVERFNRTILERVRCMLNHAGLPKSFWAEAVSSAVYCINRCPSTALEFKTPQEVWSGRK 181

Query: 541 ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIW--SPSERRVILSRDVT 714
            DYS+LRVFGC AY H+   KL PRA K IF+GY +GVKGYR+W   P  ++ ++SRDV 
Sbjct: 182 VDYSELRVFGCIAYAHIKQDKLEPRALKFIFIGYPEGVKGYRLWCLEPGYKKCLISRDVV 241

Query: 715 FDEDHLFRLKQDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLE 894
           F+E  +  L + S + ++ E + ++   +  +  V  E    T      L    +     
Sbjct: 242 FNEIEMANLVKPS-KVEIHEKSQDQTIKIEVEFTVITEAKAATQRQQHILQQELDDEERS 300

Query: 895 HEQYRSIALDRPRRDAKAPSRFGFQD 972
            + Y S+A DR RR  KAP R+G  D
Sbjct: 301 IQSY-SLARDRERRAHKAPQRYGHAD 325


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
 gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  350 bits (899), Expect = e-108
 Identities = 164/321 (51%), Positives = 227/321 (70%), Gaps = 1/321 (0%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ + H T+  LDY+H+D WGP+R  S GGARY ++I+DD+SR  W + +KHK
Sbjct: 435  GKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHK 494

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +AF+ FK WK ++E QT RK+K LRTDNG++FCS+ F+++C+ EGI RHYTV +TPQQN
Sbjct: 495  YQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQN 554

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ K RC+L NAGL + FWAEA++T CYL+NRSP+ AID KTPI+VW+G  
Sbjct: 555  GVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSP 614

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A+YS LRVFGC AY HV + KL PRA K IF+GY  GVKGY++W P  ++V++SR+V F 
Sbjct: 615  ANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFH 674

Query: 721  EDHLFRLK-QDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLEH 897
            E  +   K   +V  + +E AS +VEH+        +     + D   ++D  +S+ ++ 
Sbjct: 675  ESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIED-SDSSIVQQ 733

Query: 898  EQYRSIALDRPRRDAKAPSRF 960
                SIA D+P+R+ K P R+
Sbjct: 734  SPKHSIAKDKPKRNIKPPRRY 754


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 634

 Score =  337 bits (864), Expect = e-108
 Identities = 162/326 (49%), Positives = 220/326 (67%), Gaps = 2/326 (0%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK  R+ FS + H +   LDY+H+D WGPSR  S GGARYFLSI+DDFSR  WV+ +K K
Sbjct: 120  GKASRLKFSTSTHSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVYFLKQK 179

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
            +E F++FK WK+L+E QTGR +K+LRTDNGLEFC  +F  FCR+ G+ARH TVR TPQ+N
Sbjct: 180  NEVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDEKFSKFCRENGVARHKTVRGTPQKN 239

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            G+AER NRT+LE+ RC+L +AGL +SFW EA+++  Y +NR P+TA++ KTP EVW+G+ 
Sbjct: 240  GLAERFNRTILERVRCMLNHAGLPKSFWVEAVSSAVYCINRCPSTALEFKTPQEVWSGRK 299

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIW--SPSERRVILSRDVT 714
             DYS+LRVFGC AY H+   KL PRA K IF+GY +GVKGYR+W   P  ++ ++SRDV 
Sbjct: 300  VDYSELRVFGCIAYAHIKQDKLEPRALKFIFIGYPEGVKGYRLWCLEPGYKKCLISRDVV 359

Query: 715  FDEDHLFRLKQDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLE 894
            F+E  +  L + S + ++ E + ++   +  +  V  E    T      L    +     
Sbjct: 360  FNEIEMANLVKPS-KVEIHEKSQDQTIKIEVEFTVITEAKAATQRQQHILQQELDDEERS 418

Query: 895  HEQYRSIALDRPRRDAKAPSRFGFQD 972
             + Y S+A DR RR  KAP R+G  D
Sbjct: 419  IQSY-SLARDRERRAHKAPQRYGHAD 443


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]
          Length = 1009

 Score =  346 bits (888), Expect = e-108
 Identities = 163/321 (50%), Positives = 223/321 (69%), Gaps = 1/321 (0%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK  RV F+ + H T+  LDY+H+D WGP+   S GGARY ++IIDD+SR  W + +KHK
Sbjct: 295  GKHHRVKFNTSTHTTEGILDYVHSDLWGPTCKTSFGGARYMMTIIDDYSRKVWPYFLKHK 354

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +AF+ FK WK ++E QT RK+K LR DNG+EFCS+ F+++C+ EGI RHYTV +TPQQN
Sbjct: 355  YQAFDVFKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQN 414

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ K RC+L NAGL + FWAEA++T CYL+NRSP+ AID KTPIEVW+   
Sbjct: 415  GVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSSSP 474

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A YS LRVF C AY HV +GKL PRA K IF+GY  GVKGY++W P  ++V+++R+V F 
Sbjct: 475  AKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVINRNVVFH 534

Query: 721  EDHLFRLK-QDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLEH 897
            E  +   K   +V  + +E AS +VEH+        +     + D   ++D  +S+ ++ 
Sbjct: 535  ESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIED-SDSSIVQQ 593

Query: 898  EQYRSIALDRPRRDAKAPSRF 960
               RSIA DRP+R+ K P ++
Sbjct: 594  SPKRSIAKDRPKRNTKPPRKY 614


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  348 bits (894), Expect = e-107
 Identities = 163/321 (50%), Positives = 222/321 (69%), Gaps = 1/321 (0%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ + H T+  LDY+H+D WGP+   S GGARY ++I+DD+SR  W + +KHK
Sbjct: 446  GKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHK 505

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +AF+ FK WK ++E QT RK+K LRTDNG+EFCS+ F+++C+ EGI  HYT  +TPQQN
Sbjct: 506  YQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQN 565

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
             VAERMNRT++ K RC+L NAGL + FWAEA++T CYL+NRSP  AID KTPIEVW+G  
Sbjct: 566  DVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSP 625

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
             +YS LRVFGC AY HV +GKL PRA K IF+GY  GVKGY++W P  ++V++SR+V F 
Sbjct: 626  TNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFH 685

Query: 721  EDHLFRLK-QDSVESKLEEGASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLEH 897
            E  +   K   +V  + +E AS +VEH+        +     + D   ++D  +S+ +  
Sbjct: 686  ESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIED-SDSSIVHQ 744

Query: 898  EQYRSIALDRPRRDAKAPSRF 960
               RSIA D+P+R+ K P R+
Sbjct: 745  SPKRSIAKDKPKRNIKPPRRY 765


>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 785

 Score =  339 bits (869), Expect = e-107
 Identities = 156/253 (61%), Positives = 193/253 (76%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GKQ+ V FS   H +K  LDY+H+D WGP+ V S    RYF++ IDD+S+  WV+ +K K
Sbjct: 440  GKQRGVKFSSGKHTSKGILDYVHSDLWGPAPVESHSRCRYFVTFIDDYSKKVWVYFLKTK 499

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             E F+ FK WKI+IE  T R+IK LRTDNGLEFC +EF  FC+ EGI RH+TVR TPQQN
Sbjct: 500  DELFDWFKEWKIMIEKHTSRQIKTLRTDNGLEFCGQEFNEFCKKEGILRHHTVRRTPQQN 559

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMN+TLL++ RC+ LNAGL + FWAEA+NTT YLVNRSP+TAID KTP ++W  K 
Sbjct: 560  GVAERMNQTLLQRARCIRLNAGLSKKFWAEAVNTTAYLVNRSPSTAIDLKTPQDLWYDKP 619

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            +DYS LR+FGCPAY HV+DGKL PRA K IF+GYG GVKGYR+W     +VI+SRDVTFD
Sbjct: 620  SDYSGLRIFGCPAYAHVNDGKLEPRAIKCIFLGYGTGVKGYRLWHFDSNKVIISRDVTFD 679

Query: 721  EDHLFRLKQDSVE 759
            E  +F  K++ V+
Sbjct: 680  ESAMFSQKEELVD 692


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  348 bits (894), Expect = e-106
 Identities = 169/328 (51%), Positives = 223/328 (67%), Gaps = 9/328 (2%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ ++H TK TLDY+HAD WGPS+ PSLGGARY L+IIDD+SR  W + +KHK
Sbjct: 466  GKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHK 525

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             + F  FK+WK++IE QT RK+K LRTDNG EFCS  F  +CR EGI RH+T+ +TPQQN
Sbjct: 526  DDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQN 585

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ + RC+L +A +++ FWAEA +T CYL+NRSP+  ++ KTPIEVW+G  
Sbjct: 586  GVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP 645

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            ADYS+L+VFGC AY HV +GKL PRA K +F+GYG GVKGY++W+P   +  +SR V F+
Sbjct: 646  ADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFN 705

Query: 721  EDHLF--RLKQDSVESKLEEGASEKVEHVAKQVDVEHE-VPEDTDHDVTPLDDPPNS--- 882
            E  +F   L  + V  K  +    +VEHV     V+ E V E  DH+    DD  +    
Sbjct: 706  ESVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQ 765

Query: 883  ---AHLEHEQYRSIALDRPRRDAKAPSR 957
                 L+ E+   IA  + +R  K P R
Sbjct: 766  QTPPILQLEEELPIAQRKSKRTTKPPKR 793


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  348 bits (894), Expect = e-106
 Identities = 168/328 (51%), Positives = 223/328 (67%), Gaps = 9/328 (2%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK KRV F+ ++H TK TLDY+HAD WGPS+ PSLGGARY L++IDD+SR  W + +KHK
Sbjct: 466  GKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHK 525

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             + F  FK+WK++IE QT RK+K LRTDNG EFCS  F  +CR EGI RH+T+ +TPQQN
Sbjct: 526  DDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQN 585

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            GVAERMNRT++ + RC+L +A +++ FWAEA +T CYL+NRSP+  ++ KTPIEVW+G  
Sbjct: 586  GVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMP 645

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            ADYS+L+VFGC AY HV +GKL PRA K +F+GYG GVKGY++W+P   +  +SR V F+
Sbjct: 646  ADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFN 705

Query: 721  EDHLF--RLKQDSVESKLEEGASEKVEHVAKQVDVEHE-VPEDTDHDVTPLDDPPNS--- 882
            E  +F   L  + V  K  +    +VEHV     V+ E V E  DH+    DD  +    
Sbjct: 706  ESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQ 765

Query: 883  ---AHLEHEQYRSIALDRPRRDAKAPSR 957
                 L+ E+   IA  + +R  K P R
Sbjct: 766  QTPPILQLEEELPIAQRKSKRTTKPPKR 793


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  348 bits (894), Expect = e-106
 Identities = 171/338 (50%), Positives = 231/338 (68%), Gaps = 11/338 (3%)
 Frame = +1

Query: 1    GKQKRVSFSKAIHQTKATLDYLHADCWGPSRVPSLGGARYFLSIIDDFSRMTWVFMMKHK 180
            GK  R  F+K  H +K  LDY H D WGP++VPSL G RYF+S+IDD+SR  W++++K K
Sbjct: 464  GKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIK 523

Query: 181  SEAFEKFKHWKILIENQTGRKIKRLRTDNGLEFCSREFEAFCRDEGIARHYTVRYTPQQN 360
             +A EKFK WK L+ENQ+  K+K LRTDNGLEFCS+ FE +C+  GI RH TVR+TPQQN
Sbjct: 524  DQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQN 583

Query: 361  GVAERMNRTLLEKTRCLLLNAGLDRSFWAEALNTTCYLVNRSPATAIDCKTPIEVWTGKT 540
            G+AERMNRTL++KTRC+L+N+ L RSFWAEA+NT  YLVNRSP++AI  KTP E+W GK 
Sbjct: 584  GLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKP 643

Query: 541  ADYSKLRVFGCPAYYHVSDGKLNPRANKGIFMGYGDGVKGYRIWSPSERRVILSRDVTFD 720
            A+Y  LRVFGCPAY H++ GKL  RA KG+F+GY DGVKGY+IW   + + I+SRDV F 
Sbjct: 644  ANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFH 703

Query: 721  EDHLFRLKQDSVESKLEE--GASEKVEHVAKQVDVEHEVPEDTDHDVTPLDDPPNSAHLE 894
            E  L +   +  ++ L++   A+++      +V+VE    + ++ +    D+   +   E
Sbjct: 704  ESVLLKESAEH-DAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEE 762

Query: 895  HE---------QYRSIALDRPRRDAKAPSRFGFQDYAA 981
            HE         Q   +A DR RR+ +AP R+G+ D  A
Sbjct: 763  HEVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIA 800