BLASTX nr result

ID: Chrysanthemum21_contig00038452 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00038452
         (390 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023758915.1| SNF2 domain-containing protein CLASSY 4-like...    84   5e-16
ref|XP_021969300.1| SNF2 domain-containing protein CLASSY 4-like...    75   4e-13

>ref|XP_023758915.1| SNF2 domain-containing protein CLASSY 4-like [Lactuca sativa]
 ref|XP_023758916.1| SNF2 domain-containing protein CLASSY 4-like [Lactuca sativa]
 gb|PLY89171.1| hypothetical protein LSAT_3X15721 [Lactuca sativa]
          Length = 1275

 Score = 83.6 bits (205), Expect = 5e-16
 Identities = 56/122 (45%), Positives = 69/122 (56%)
 Frame = +1

Query: 16  SGKCLKRKRGVGGKFVTEVRKSSRGFAAADDSDDDEGVIFLGDDIRFLDDYDPSHSSRVE 195
           +G CLK KR +  KFVT     S G    D+SDD E +  LGDDI  LDD DPSHSSRV 
Sbjct: 278 NGDCLKGKRILEDKFVT-----SHG-CLLDESDDHERIT-LGDDITCLDDTDPSHSSRVG 330

Query: 196 SNEVKASPVELEXXXXXXXXXXXXXXXXLKSSEKKVDDSPNFKSPVENDSDSDWKDLRPS 375
           SNE+K SPVEL+                +++   + DDS   KS  E+  DSDW+D+ P 
Sbjct: 331 SNEIKLSPVELD---------------SIQADVNEGDDSQELKSSEED--DSDWQDMDPP 373

Query: 376 EN 381
           EN
Sbjct: 374 EN 375


>ref|XP_021969300.1| SNF2 domain-containing protein CLASSY 4-like [Helianthus annuus]
 ref|XP_021969301.1| SNF2 domain-containing protein CLASSY 4-like [Helianthus annuus]
 ref|XP_021969302.1| SNF2 domain-containing protein CLASSY 4-like [Helianthus annuus]
 gb|OTG22042.1| putative SNF2-related, N-terminal domain-containing protein
           [Helianthus annuus]
          Length = 1195

 Score = 75.1 bits (183), Expect = 4e-13
 Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 11/122 (9%)
 Frame = +1

Query: 16  SGKCLKRKRGVGGKFVTEVRKSS---RGF--------AAADDSDDDEGVIFLGDDIRFLD 162
           +G CLK K G G +F  + + SS   RGF          +D+ D+ EG++FLGDD   LD
Sbjct: 150 NGDCLKGKGGYGDEFDKDAKDSSLSSRGFRLSSGFQICESDEDDEVEGIMFLGDDPTCLD 209

Query: 163 DYDPSHSSRVESNEVKASPVELEXXXXXXXXXXXXXXXXLKSSEKKVDDSPNFKSPVEND 342
           DYDPSHSSRVESNEVK   ++ +                 KS E++ +D     SP E+ 
Sbjct: 210 DYDPSHSSRVESNEVKVDSIQTDADAKVQGQ---------KSFEEEDNDRQKPVSPEEDG 260

Query: 343 SD 348
           S+
Sbjct: 261 SN 262


Top