BLASTX nr result

ID: Chrysanthemum21_contig00038003 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00038003
         (556 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PLY88140.1| hypothetical protein LSAT_0X31381 [Lactuca sativa]      58   2e-06
ref|XP_023760329.1| paired amphipathic helix protein Sin3-like 2...    58   2e-06

>gb|PLY88140.1| hypothetical protein LSAT_0X31381 [Lactuca sativa]
          Length = 1276

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +3

Query: 3   YEITVIEDEEAPAKRTVEFEEAISFVNKIK 92
           YEITVIED+EAP KRT+EFEEAISFVNKIK
Sbjct: 127 YEITVIEDDEAPPKRTIEFEEAISFVNKIK 156


>ref|XP_023760329.1| paired amphipathic helix protein Sin3-like 2 [Lactuca sativa]
          Length = 1316

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +3

Query: 3   YEITVIEDEEAPAKRTVEFEEAISFVNKIK 92
           YEITVIED+EAP KRT+EFEEAISFVNKIK
Sbjct: 129 YEITVIEDDEAPPKRTIEFEEAISFVNKIK 158


Top